CmaCh12G005320.1 (mRNA) Cucurbita maxima (Rimu)

NameCmaCh12G005320.1
TypemRNA
OrganismCucurbita maxima (Cucurbita maxima (Rimu))
DescriptionCalcium-binding EF-hand family protein, putative
LocationCma_Chr12 : 2758225 .. 2758752 (-)
Sequence length528
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSexon
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGTCTGTCTCCATACTCCAAGCTTGGGCCGAGAATGAAGCAAATGAATTGATGAAGAAGTATGACAGAAATGGTGATGGTGTTCTCACTAAAGAAGAGCTACAAGTCTTTCAACGTGATGTTCGAGGATCAACTCAACTCAACAATCAAGGATTTTTATCTAATATTCCAAAAACAAACGACAAGGGTGCCAACAAGCTTAGCTCAAATGCTCATACAAACCCAAAAATACAAGTACAAGACAAAGCTACAAAATCTTCGACAAAAGCTCCTAGTGAAAAGGTATCTAATGTGCGACTTAGTAGAGAGCAGATAAAGAAGATTTTCAAATATTATGATAGCGACAAAGACGGTTTTCTCAACATAAGAGAGGTAACGAAAGCATTTAGCTTTCTAGGCTCAATTAATCCATTCTACAAGGCTCAATACGCTATGACTTTTGTTGATGCTAATAACGATAGTCTTATCAATGAAGCTGAGCTTGAGAAACTTATAGATTATGCCTGTAAAATTATCAAAAAGAAATGA

mRNA sequence

ATGTCTGTCTCCATACTCCAAGCTTGGGCCGAGAATGAAGCAAATGAATTGATGAAGAAGTATGACAGAAATGGTGATGGTGTTCTCACTAAAGAAGAGCTACAAGTCTTTCAACGTGATGTTCGAGGATCAACTCAACTCAACAATCAAGGATTTTTATCTAATATTCCAAAAACAAACGACAAGGGTGCCAACAAGCTTAGCTCAAATGCTCATACAAACCCAAAAATACAAGTACAAGACAAAGCTACAAAATCTTCGACAAAAGCTCCTAGTGAAAAGGTATCTAATGTGCGACTTAGTAGAGAGCAGATAAAGAAGATTTTCAAATATTATGATAGCGACAAAGACGGTTTTCTCAACATAAGAGAGGTAACGAAAGCATTTAGCTTTCTAGGCTCAATTAATCCATTCTACAAGGCTCAATACGCTATGACTTTTGTTGATGCTAATAACGATAGTCTTATCAATGAAGCTGAGCTTGAGAAACTTATAGATTATGCCTGTAAAATTATCAAAAAGAAATGA

Coding sequence (CDS)

ATGTCTGTCTCCATACTCCAAGCTTGGGCCGAGAATGAAGCAAATGAATTGATGAAGAAGTATGACAGAAATGGTGATGGTGTTCTCACTAAAGAAGAGCTACAAGTCTTTCAACGTGATGTTCGAGGATCAACTCAACTCAACAATCAAGGATTTTTATCTAATATTCCAAAAACAAACGACAAGGGTGCCAACAAGCTTAGCTCAAATGCTCATACAAACCCAAAAATACAAGTACAAGACAAAGCTACAAAATCTTCGACAAAAGCTCCTAGTGAAAAGGTATCTAATGTGCGACTTAGTAGAGAGCAGATAAAGAAGATTTTCAAATATTATGATAGCGACAAAGACGGTTTTCTCAACATAAGAGAGGTAACGAAAGCATTTAGCTTTCTAGGCTCAATTAATCCATTCTACAAGGCTCAATACGCTATGACTTTTGTTGATGCTAATAACGATAGTCTTATCAATGAAGCTGAGCTTGAGAAACTTATAGATTATGCCTGTAAAATTATCAAAAAGAAATGA

Protein sequence

MSVSILQAWAENEANELMKKYDRNGDGVLTKEELQVFQRDVRGSTQLNNQGFLSNIPKTNDKGANKLSSNAHTNPKIQVQDKATKSSTKAPSEKVSNVRLSREQIKKIFKYYDSDKDGFLNIREVTKAFSFLGSINPFYKAQYAMTFVDANNDSLINEAELEKLIDYACKIIKKK
BLAST of CmaCh12G005320.1 vs. TrEMBL
Match: A0A0A0LRC8_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_2G359950 PE=4 SV=1)

HSP 1 Score: 212.2 bits (539), Expect = 5.0e-52
Identity = 120/177 (67.80%), Postives = 140/177 (79.10%), Query Frame = 1

Query: 1   MSVSILQAWAENEANELMKKYDRNGDGVLTKEELQVFQRDVRGSTQLNNQGFLSN--IPK 60
           MSVS LQAWA+NEANEL+KKYDRNGDGVLTKEELQ F RD RGSTQLNN   +S+  +PK
Sbjct: 1   MSVSHLQAWAKNEANELIKKYDRNGDGVLTKEELQSFLRDARGSTQLNNIRNVSSSTVPK 60

Query: 61  TNDKGANKLSSNAHTNPKIQVQDKATKSSTKAPSEKVSNVRLSREQIKKIFKYYDSDKDG 120
           TN+  A K+SSN    PK Q+ DKA  SS      K SNV LSREQIK+IFKY+DS+KDG
Sbjct: 61  TNENLAQKVSSNTCITPKKQLLDKAQGSS------KQSNVPLSREQIKEIFKYHDSNKDG 120

Query: 121 FLNIREVTKAFSFLGSINPFYKAQYAMTFVDANNDSLINEAELEKLIDYACKIIKKK 176
           FL+IRE+TKAFS +GSI PF KA+YAM + D + D L++EAEL+KLIDYA KIIKKK
Sbjct: 121 FLSIRELTKAFSSMGSIVPFCKARYAMAYADVDEDGLVSEAELDKLIDYAHKIIKKK 171

BLAST of CmaCh12G005320.1 vs. TrEMBL
Match: A0A0A0KMQ1_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_5G067410 PE=4 SV=1)

HSP 1 Score: 156.0 bits (393), Expect = 4.2e-35
Identity = 94/176 (53.41%), Postives = 120/176 (68.18%), Query Frame = 1

Query: 1   MSVSILQA-WAENEANELMKKYDRNGDGVLTKEELQVFQRDVRGSTQLNNQGFLSNIPKT 60
           M +S LQA  A  EA+ L+K+Y++NGD V  K     F  DVR STQ+ N+  +  I K 
Sbjct: 1   MYISKLQASMAMYEASMLIKQYEKNGDAVKVK----AFD-DVRSSTQIGNRESVLKILKP 60

Query: 61  NDKGANKLSSNAHTNPKIQVQDKATKSSTKAPSEKVSNVRLSREQIKKIFKYYDSDKDGF 120
           +D  A+KL S AH  P  +   K  KS T+    K SN+ LSRE+IK+IF+Y+D++ DGF
Sbjct: 61  SDGVAHKLRSEAHIQPTQRTGGKGKKSITRVLDRKSSNMSLSRERIKEIFQYHDNNNDGF 120

Query: 121 LNIREVTKAFSFLGSINPFYKAQYAMTFVDANNDSLINEAELEKLIDYACKIIKKK 176
           LN  E+TKAF+FLGS+ PFYKA Y M + DAN D LI+EAEL+KLIDYA KIIKKK
Sbjct: 121 LNRMELTKAFAFLGSMFPFYKACYGMVYADANEDGLISEAELDKLIDYASKIIKKK 171

BLAST of CmaCh12G005320.1 vs. TrEMBL
Match: A0A0A0KLF3_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_5G067670 PE=4 SV=1)

HSP 1 Score: 155.2 bits (391), Expect = 7.2e-35
Identity = 89/167 (53.29%), Postives = 115/167 (68.86%), Query Frame = 1

Query: 10  AENEANELMKKYDRNGDGVLTKEELQVFQRDVRGSTQLN-NQGFLSNIPKTNDKGANKLS 69
           A+ EA++LMKKY++NG+GV+    L  F  + RGSTQ+N N+   +   K ND  A+KLS
Sbjct: 38  AKYEASKLMKKYEQNGEGVI----LSAFNDNARGSTQINTNREMATKKLKPNDDVAHKLS 97

Query: 70  SNAHTNPKIQVQDKATKSSTKAPSEKVSNVRLSREQIKKIFKYYDSDKDGFLNIREVTKA 129
           SNA      Q++ KA     +    K SN++ SREQIK+IF+YYDSD+DGFLNIREVTKA
Sbjct: 98  SNAQLKSNNQIRGKAQVPIKRVYDTKASNMQFSREQIKEIFQYYDSDRDGFLNIREVTKA 157

Query: 130 FSFLGSINPFYKAQYAMTFVDANNDSLINEAELEKLIDYACKIIKKK 176
           F+ LGSI PF KA + M + D N D LI E EL+KLI+YA K +KKK
Sbjct: 158 FALLGSIFPFNKAYHGMVYADTNKDGLIGEDELDKLINYANKFMKKK 200

BLAST of CmaCh12G005320.1 vs. TrEMBL
Match: A0A0A0KIY4_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_5G068170 PE=4 SV=1)

HSP 1 Score: 134.0 bits (336), Expect = 1.7e-28
Identity = 83/180 (46.11%), Postives = 119/180 (66.11%), Query Frame = 1

Query: 1   MSVSILQ-AWAENEANELMKKYDRNGDGVLTKEELQVFQRDVRGSTQLNNQGFLSN---I 60
           M +S LQ + A+ EA++LMKK++ N +GV     L+ F      ST++NN+  ++    +
Sbjct: 1   MYISNLQVSKAKYEASKLMKKHENNDEGV----PLKAFNGIPPASTKINNKQAMATEIIL 60

Query: 61  PKTNDKGANKLSSNAHTNPKIQV-QDKATKSSTKAPSEKVSNVRLSREQIKKIFKYYDSD 120
             +N   A+ L+SNA+  P  Q+   KA  ++T     K SN++ SREQIK+IF+Y+DSD
Sbjct: 61  KPSNHPVAHYLTSNAYMIPSKQLGAGKAQVTTTSVLDIKASNMQFSREQIKEIFQYHDSD 120

Query: 121 KDGFLNIREVTKAFSFLGSINPFYKAQYAMTFVDANNDSLINEAELEKLIDYACKIIKKK 176
            DGFLN+REVTKAF+FLG+I P YKA + M + DAN D LI++ ELEKL+DYA K   K+
Sbjct: 121 NDGFLNLREVTKAFAFLGTILPLYKAYHGMVYADANKDGLISKDELEKLVDYAYKFFNKR 176

BLAST of CmaCh12G005320.1 vs. TrEMBL
Match: A0A0A0LNG6_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_2G359930 PE=4 SV=1)

HSP 1 Score: 91.3 bits (225), Expect = 1.3e-15
Identity = 56/169 (33.14%), Postives = 87/169 (51.48%), Query Frame = 1

Query: 10  AENEANELMKKYDRNGDGVLTKEELQVFQRDVRGSTQLNNQGFLSNIPKTNDKGANKLSS 69
           +E EA+ L+KKYD+NGD +LTK+EL                                +  
Sbjct: 19  SEQEASNLIKKYDKNGDSILTKDELTAL-----------------------------IIE 78

Query: 70  NAHTNPKIQVQDKATKSSTKAPSEKVS----NVRLSREQIKKIFKYYDSDKDGFLNIREV 129
            A ++   Q++ +  +     P EK S     +RLS++++++IF  +D D DG+L   E+
Sbjct: 79  QAASHHHQQIKPQKVEPKVNIPDEKASCGPYKMRLSKDEMREIFLEHDIDGDGYLTRSEL 138

Query: 130 TKAFSFLGSINPFYKAQYAMTFVDANNDSLINEAELEKLIDYACKIIKK 175
            KAF+  GS N F KA YA+   DAN D  I   EL+K+++YA ++I K
Sbjct: 139 VKAFNMCGSFNSFSKANYALNLADANGDGFICLDELDKVLEYADRVINK 158

BLAST of CmaCh12G005320.1 vs. NCBI nr
Match: gi|449470190|ref|XP_004152801.1| (PREDICTED: probable calcium-binding protein CML11 [Cucumis sativus])

HSP 1 Score: 212.2 bits (539), Expect = 7.1e-52
Identity = 120/177 (67.80%), Postives = 140/177 (79.10%), Query Frame = 1

Query: 1   MSVSILQAWAENEANELMKKYDRNGDGVLTKEELQVFQRDVRGSTQLNNQGFLSN--IPK 60
           MSVS LQAWA+NEANEL+KKYDRNGDGVLTKEELQ F RD RGSTQLNN   +S+  +PK
Sbjct: 1   MSVSHLQAWAKNEANELIKKYDRNGDGVLTKEELQSFLRDARGSTQLNNIRNVSSSTVPK 60

Query: 61  TNDKGANKLSSNAHTNPKIQVQDKATKSSTKAPSEKVSNVRLSREQIKKIFKYYDSDKDG 120
           TN+  A K+SSN    PK Q+ DKA  SS      K SNV LSREQIK+IFKY+DS+KDG
Sbjct: 61  TNENLAQKVSSNTCITPKKQLLDKAQGSS------KQSNVPLSREQIKEIFKYHDSNKDG 120

Query: 121 FLNIREVTKAFSFLGSINPFYKAQYAMTFVDANNDSLINEAELEKLIDYACKIIKKK 176
           FL+IRE+TKAFS +GSI PF KA+YAM + D + D L++EAEL+KLIDYA KIIKKK
Sbjct: 121 FLSIRELTKAFSSMGSIVPFCKARYAMAYADVDEDGLVSEAELDKLIDYAHKIIKKK 171

BLAST of CmaCh12G005320.1 vs. NCBI nr
Match: gi|659089539|ref|XP_008445564.1| (PREDICTED: probable calcium-binding protein CML11 [Cucumis melo])

HSP 1 Score: 185.7 bits (470), Expect = 7.2e-44
Identity = 111/177 (62.71%), Postives = 130/177 (73.45%), Query Frame = 1

Query: 1   MSVSILQAWAENEANELMKKYDRNGDGVLTKEELQVFQRDVRGSTQLNNQGFLSN--IPK 60
           MSVS LQAWA+ EA+EL+KKYDRNGDGVLTKEELQ F  D R    L N  F+S+  IPK
Sbjct: 1   MSVSHLQAWAKIEASELIKKYDRNGDGVLTKEELQSFLHDAR----LKNIRFVSSSTIPK 60

Query: 61  TNDKGANKLSSNAHTNPKIQVQDKATKSSTKAPSEKVSNVRLSREQIKKIFKYYDSDKDG 120
           TN+    K+SSN    PK Q+ DKA  S       + SNV LSREQIK+IFKY+DS+KDG
Sbjct: 61  TNENLDQKVSSNTRIKPKKQLLDKAQDSL------RQSNVPLSREQIKEIFKYHDSNKDG 120

Query: 121 FLNIREVTKAFSFLGSINPFYKAQYAMTFVDANNDSLINEAELEKLIDYACKIIKKK 176
           FL+IRE+TKAF  LGSI PF KA++AM + D + D LI+EAEL KLIDYA KIIKKK
Sbjct: 121 FLSIRELTKAFGSLGSIVPFAKARHAMAYADVDEDGLISEAELHKLIDYAEKIIKKK 167

BLAST of CmaCh12G005320.1 vs. NCBI nr
Match: gi|700194510|gb|KGN49687.1| (hypothetical protein Csa_5G067410 [Cucumis sativus])

HSP 1 Score: 156.0 bits (393), Expect = 6.1e-35
Identity = 94/176 (53.41%), Postives = 120/176 (68.18%), Query Frame = 1

Query: 1   MSVSILQA-WAENEANELMKKYDRNGDGVLTKEELQVFQRDVRGSTQLNNQGFLSNIPKT 60
           M +S LQA  A  EA+ L+K+Y++NGD V  K     F  DVR STQ+ N+  +  I K 
Sbjct: 1   MYISKLQASMAMYEASMLIKQYEKNGDAVKVK----AFD-DVRSSTQIGNRESVLKILKP 60

Query: 61  NDKGANKLSSNAHTNPKIQVQDKATKSSTKAPSEKVSNVRLSREQIKKIFKYYDSDKDGF 120
           +D  A+KL S AH  P  +   K  KS T+    K SN+ LSRE+IK+IF+Y+D++ DGF
Sbjct: 61  SDGVAHKLRSEAHIQPTQRTGGKGKKSITRVLDRKSSNMSLSRERIKEIFQYHDNNNDGF 120

Query: 121 LNIREVTKAFSFLGSINPFYKAQYAMTFVDANNDSLINEAELEKLIDYACKIIKKK 176
           LN  E+TKAF+FLGS+ PFYKA Y M + DAN D LI+EAEL+KLIDYA KIIKKK
Sbjct: 121 LNRMELTKAFAFLGSMFPFYKACYGMVYADANEDGLISEAELDKLIDYASKIIKKK 171

BLAST of CmaCh12G005320.1 vs. NCBI nr
Match: gi|700194512|gb|KGN49689.1| (hypothetical protein Csa_5G067670 [Cucumis sativus])

HSP 1 Score: 155.2 bits (391), Expect = 1.0e-34
Identity = 89/167 (53.29%), Postives = 115/167 (68.86%), Query Frame = 1

Query: 10  AENEANELMKKYDRNGDGVLTKEELQVFQRDVRGSTQLN-NQGFLSNIPKTNDKGANKLS 69
           A+ EA++LMKKY++NG+GV+    L  F  + RGSTQ+N N+   +   K ND  A+KLS
Sbjct: 38  AKYEASKLMKKYEQNGEGVI----LSAFNDNARGSTQINTNREMATKKLKPNDDVAHKLS 97

Query: 70  SNAHTNPKIQVQDKATKSSTKAPSEKVSNVRLSREQIKKIFKYYDSDKDGFLNIREVTKA 129
           SNA      Q++ KA     +    K SN++ SREQIK+IF+YYDSD+DGFLNIREVTKA
Sbjct: 98  SNAQLKSNNQIRGKAQVPIKRVYDTKASNMQFSREQIKEIFQYYDSDRDGFLNIREVTKA 157

Query: 130 FSFLGSINPFYKAQYAMTFVDANNDSLINEAELEKLIDYACKIIKKK 176
           F+ LGSI PF KA + M + D N D LI E EL+KLI+YA K +KKK
Sbjct: 158 FALLGSIFPFNKAYHGMVYADTNKDGLIGEDELDKLINYANKFMKKK 200

BLAST of CmaCh12G005320.1 vs. NCBI nr
Match: gi|700194513|gb|KGN49690.1| (hypothetical protein Csa_5G068170 [Cucumis sativus])

HSP 1 Score: 134.0 bits (336), Expect = 2.5e-28
Identity = 83/180 (46.11%), Postives = 119/180 (66.11%), Query Frame = 1

Query: 1   MSVSILQ-AWAENEANELMKKYDRNGDGVLTKEELQVFQRDVRGSTQLNNQGFLSN---I 60
           M +S LQ + A+ EA++LMKK++ N +GV     L+ F      ST++NN+  ++    +
Sbjct: 1   MYISNLQVSKAKYEASKLMKKHENNDEGV----PLKAFNGIPPASTKINNKQAMATEIIL 60

Query: 61  PKTNDKGANKLSSNAHTNPKIQV-QDKATKSSTKAPSEKVSNVRLSREQIKKIFKYYDSD 120
             +N   A+ L+SNA+  P  Q+   KA  ++T     K SN++ SREQIK+IF+Y+DSD
Sbjct: 61  KPSNHPVAHYLTSNAYMIPSKQLGAGKAQVTTTSVLDIKASNMQFSREQIKEIFQYHDSD 120

Query: 121 KDGFLNIREVTKAFSFLGSINPFYKAQYAMTFVDANNDSLINEAELEKLIDYACKIIKKK 176
            DGFLN+REVTKAF+FLG+I P YKA + M + DAN D LI++ ELEKL+DYA K   K+
Sbjct: 121 NDGFLNLREVTKAFAFLGTILPLYKAYHGMVYADANKDGLISKDELEKLVDYAYKFFNKR 176

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A0A0LRC8_CUCSA5.0e-5267.80Uncharacterized protein OS=Cucumis sativus GN=Csa_2G359950 PE=4 SV=1[more]
A0A0A0KMQ1_CUCSA4.2e-3553.41Uncharacterized protein OS=Cucumis sativus GN=Csa_5G067410 PE=4 SV=1[more]
A0A0A0KLF3_CUCSA7.2e-3553.29Uncharacterized protein OS=Cucumis sativus GN=Csa_5G067670 PE=4 SV=1[more]
A0A0A0KIY4_CUCSA1.7e-2846.11Uncharacterized protein OS=Cucumis sativus GN=Csa_5G068170 PE=4 SV=1[more]
A0A0A0LNG6_CUCSA1.3e-1533.14Uncharacterized protein OS=Cucumis sativus GN=Csa_2G359930 PE=4 SV=1[more]
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
gi|449470190|ref|XP_004152801.1|7.1e-5267.80PREDICTED: probable calcium-binding protein CML11 [Cucumis sativus][more]
gi|659089539|ref|XP_008445564.1|7.2e-4462.71PREDICTED: probable calcium-binding protein CML11 [Cucumis melo][more]
gi|700194510|gb|KGN49687.1|6.1e-3553.41hypothetical protein Csa_5G067410 [Cucumis sativus][more]
gi|700194512|gb|KGN49689.1|1.0e-3453.29hypothetical protein Csa_5G067670 [Cucumis sativus][more]
gi|700194513|gb|KGN49690.1|2.5e-2846.11hypothetical protein Csa_5G068170 [Cucumis sativus][more]
The following terms have been associated with this mRNA:
Vocabulary: INTERPRO
TermDefinition
IPR002048EF_hand_dom
IPR011992EF-hand-dom_pair
IPR018247EF_Hand_1_Ca_BS
Vocabulary: Molecular Function
TermDefinition
GO:0005509calcium ion binding
GO Assignments
This mRNA is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0005509 calcium ion binding

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameType
CmaCh12G005320CmaCh12G005320gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameType
CmaCh12G005320.1CmaCh12G005320.1-proteinpolypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameType
CmaCh12G005320.1.CDS.1CmaCh12G005320.1.CDS.1CDS


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameType
CmaCh12G005320.1.exon.1CmaCh12G005320.1.exon.1exon


Analysis Name: InterPro Annotations of Cucurbita maxima
Date Performed: 2017-05-20
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR002048EF-hand domainPFAMPF13499EF-hand_7coord: 15..129
score: 8.
IPR002048EF-hand domainSMARTSM00054efh_1coord: 104..132
score: 1.6coord: 13..41
score: 0.
IPR002048EF-hand domainPROFILEPS50222EF_HAND_2coord: 140..171
score: 5.336coord: 9..44
score: 11.389coord: 100..135
score: 1
IPR011992EF-hand domain pairGENE3DG3DSA:1.10.238.10coord: 116..165
score: 3.9E-9coord: 19..42
score: 3.2E-9coord: 84..115
score: 3.
IPR011992EF-hand domain pairunknownSSF47473EF-handcoord: 97..165
score: 1.8E-17coord: 13..59
score: 1.8
IPR018247EF-Hand 1, calcium-binding sitePROSITEPS00018EF_HAND_1coord: 22..34
score: -coord: 113..125
scor
NoneNo IPR availablePANTHERPTHR10891EF-HAND CALCIUM-BINDING DOMAIN CONTAINING PROTEINcoord: 96..168
score: 1.6
NoneNo IPR availablePANTHERPTHR10891:SF592CALCIUM-BINDING PROTEIN CML38-RELATEDcoord: 96..168
score: 1.6