CmaCh12G003830.1 (mRNA) Cucurbita maxima (Rimu) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CmaCh12G003830.1
Type	mRNA
Organism	Cucurbita maxima (Cucurbita maxima (Rimu))
Description	Cytoplasmic tRNA 2-thiolation protein 1
Location	Cma_Chr12 : 1969297 .. 1975067 (+)
Sequence length	1572

Genome Viewer

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

CTCCCTCCGCCTCCGAAATAATTGGCTTGACACCTTCGTTAACCGTAAAACCCGAGCTTTCATGACCTTTCGGCACCAATAAGCCATCAAACCGACGATGGAAGAAGCCGGCGCCAAACCTAGGAAGGGCGTCTCCTGCCTTTGCTGCATATGCGACAACAGGAAAGCTGCTCTCAAGAGGCCAAAAACCCTGCAACAGGTTTAATTTGCTTCCCGTCTTGTTTTTATTCTGATTTCTTCTTATTTGTTTCTCTGTTAGCTATCGTCATACTTGCGTTAATGATCATCGGAAACCATTGAAGAATCAGGAACCCTGGTTTCCATTCATTTAATTAATTATACAATGTGGTCTAAATGTTATTTTGGTCAGTTTGTTGTATTGTAATTCTAATAGAATGAACAGATTAACTATAGCGTTATGAAAAATCTTGCCATCAAACGAAGGATTTAAGCCGATGAATTTCATATATCAATACTTTTAACTCTCCGCTCATTTGTAGGCTTGAAAATCTGCACGAGGTCGAACTAGTGGTTATCTATATTAATTAGGGAGGAAATAACTCTACAGGGTTTCAAACACACGATCTTCTACTCGCATACCATGTTAAATCTTTATTGAACTGAAAAGCTTAAGTTGATGGGTGAGATTCCCCATCGGTTGGGGAGAAGAACAAACATTCTTCATAAGGGTGCAGAAACTTCTCCCAAGAAGACGCGTTTTAAAAACCTTGAGGGGAAGTTGGAAAGGGAAAGCCCAAAGAGGACAATATCTGCTAGCGGTGGGCTTGGGCTCTTATAATATCTTACATCACCATGTTTATTGCTTTTACAGATATGCAGAGAATGCTTCTATGAGGTCTTTGAAGAGGAGATCCATCAAGTTATTGTGAAGAATCACTTGTTCAGACCAGGGGAACGCATTGCTGTTGGTGCCTCTGGTGGAAAAGGTGGACACAAATTCTACTTAGTTCTAAATCATTCTAAATCTTCAAGATTATGTGAAAGGCCTTGTTCCTGTTATTTATTGTTGCTATGTGTGCTTGTGGGAGTCTCTTTCTTTTTTGATGTGCTGTCACGCTCCCTTCCCTTCTACGGACAAACGGGCGAGTCCTTGACTCTATTCCCGATCGGTTAGGCAAGCGGTTTGGCTTGATAACAAAGTCAACTCCAACAATTTTTTTTTTTTTATATTCTCTCATACAGGGAAGATAATTTTTGTAGATGTCTTTTGTACTATTTTTGGTTTAATAGTACACGTTCCTATTATCTTTACATTTACTATTGCCCATTTATGCAGATTCTACTGTTCTTGCATATGTGTTATCGGAATTGAATCGGCGGCACAATTATGGTTTAGACCTCTTTCTTTTATCAGTTGATGAGGGCATCACTGGATACAGAGATGACTCTCTTGAAACTGTGAAAAGAAATGAAATTCAGGTGAAAGGTCTTTCTTGTCTTGCTTTAGATATATTTTACTGTTTCCTTATTTCTTGATTTCTCTATGATTCTCTCTACGAGCTATAATATTATGACAGAAACAAATAATTTGTATGGGAATCGTCCATTCTCACTTTAATTATTCATTTTTCAGTATGGATTGCCACTACAAATTGTATCATACAAGGATTTATATGGATGGACAATGGATGAGATAGTGAAGATGATTGGCTTAAAGAATAATTGCACCTTTTGTGGAGTTTTCCGTCGGCAGGTGTGAAACAACTACTCCTGCTATGACTTCACAGTATATTTTCTGGCATTGTCTACATTGTGCATAGTTTCTTCCATGGGTATAGCAAATGTCATTTGAGGCTTACTTTTTATTCAACAAAATTACGGTATCCAAGTTAGGATATGATGTTGATACCGCCCCAGGAAAAGAAAATATAAACAAAATGGCCAGGCTATGGTGGTATTATAATTCTGAGCTGTGTGCCTCCTCATGGATCGAGTGCTTTTATAATTTGTGTTACGCTGTTAGTTAATTGCAGGCCACCCTGTCTTGACATAGGTTTTGTGTGTTTCCATTAAGGCTTATGGCCTCCTTTCTCATGTTTGATTTACTTGTGAACTATCACTAGGGGTTTAGGTGGCTTAGTTGTAAACAGAATTGATGGTTCGATTGAATTGTCAGTTTGGTTTAGCAGTTTGATGAGTCATTGTCGAGTCTTTGGGTTGGGTGGTGTAACAGCCCAAGGCCACCTCTAACAGATATTGATCGCTTTGGTCCCTTACGTATCGTCGTCCGCCTCACGGTTTTAAAACGTGTCTGTTAGGGAGAGGTTTCCACACCCTTATAAGGAATGCTTAGTTCCCCTCTCCAACTGATGTTGGATCTCACAAGTAGGGTTGAACCATGAAAATTTGGTAAGGGGACTCATGAAGGGCTCGGCTGCTAGGCTATTGATGTTTTATCATTCAATTGGTCAGTTGACCCTTAAATGAAACTAACCAATTTTCGTCTGCTTTTACAATGTTGTAAACCAAAAGTGACCAACATACACCAAACCAACCTAAGGTCAGCTTTATTGGTATCGTTGTTTTAGTTTGCACCTTTAATTATCATGCAATCATATTCTCATTCTTTTGTGGCAAGCACGGGAAGATACATAGTAATACATAGTACTAAGATGTCGAGACGTAAAACCAGCCATAGAAAATCAATTAGATAGACGTTACTCCTTCGTGTCTGCTAATTTCATGTATAAATGTGATGGGTACTATGAATTAAGATGTGTATTCCGCATTATTTCATTGAAGTAATAGATCTTTTTCGCCTGAAGGCTCTTGATAGAGGTGCTGCACTGTTGAAAGTAGACAAGCTTGCCACCGGACACAATGCAGATGACATGGCTGAAACGGTTCTGTTGAATATATTACGAGGCGACATAGCAAGGTATTCTAATACTACGAGATCACTTTCAATCTCTTTCATTTTGAACTGAGATTAGACTGAACCAATGCTTCGATTTTATAGATTGAGTCGATGTACTGCTATAATAACCGGTGAAGATGGACCGATTCCAAGATGCAAACCTTTCAAGTACACATATGAAAAGGAGATAGTTATATATCCTTTTATTGTAGTCTCATACTTCTTAAGCAAGTGTTTGTTTTTTGTGCTAGTTGTAAAACCTTAACCAGATATTCACGTATGCTTATTTTAAGAAGCTCGACTACTTCTCCACCGAGTGTAAGCGTTTCTCATTTTAGCTGTTCTTTGTTTTCTTATTTTCCTCACATTTCTGTGTCTTCTAAAAATGATAATAAAGTTGATTAGATTCAATTTTGTTGCCATAAACTTGGTGTCCTAATGCGTTTAGTCAACTATGAAATTGAATGGTTGAACAACAAATGATCTATCAAAAATACATTATCAAGCATGAATTCATCGATTTTAGGTTCCAAAACTAGTTTTGTCTAGGATTGACTTCTGTGAGATCCCACATTTGTTAGAGAGGAGAACAAAGCATTCCTATAAGGGTGTGGAAACCTCTCCCTAGTAGACGCGTTTTAAAACCGTGAGGCTGACGGCGATACGTAGCGGGCCAAAACGGACAATATCTACTAGCGATAGGTTTGGGCTGTTACAACTTTTCATTGTTCTAAAACAATCATTTTCTTCCGTGGTGCTATCGTCTGAGGAGACATGTTGACGTTATAATAACTTATGCTCTTTCACTTTATTATCATTTTTAGACTTTAGTTTGTTCATTTCCACATTCCTTTGAATCTTTCTGTTGAAATTGTAGGCATTTATTCTCCTAATGCTTATCGTGGTTTCGCTCGTGAATTTATCAAGGACTTGGAACGAATCAGGTTTCAATTCACCTCGTCATTGCTTGACAAATGTTTATTCTTCTCATTGCTGACAAGGATTGTGTTCCCTATTTTTTGCTCTCACTAGTTATGAACACTGTTGCAGACCTAGGGCCATTCTCGACATCATTAAATCGGGCGAGGATTTCAGGATTTCCACTTCGACAAAAATGCCCGAGCAAGGGACATGTGAACGATGCGGCTACATTTCAAGCCAGGTGTGCTTTGCTCTCATTTTACCTGATAACAAAAAATTGCCAAGATGGACCTAGCAGGGGTTATTCACTTCATAGCTATAATGCATTCCTAATAGATATACTCAACTTGGTTTGAGCCAATATTATCATCTGAATCTGGTCATACAGCTGCACCTCCTCACTTGTCAGCTGTATGTAGATTGTTTACTACTCGCTTGATCTAGAGGTATTTGCGATCTGCTTTCGTTTACGTTTACGTTTTCTGTTCCTCACCATTCCTTTTGAAACTCATTGTAATAGCCCAAACTCATTGTTAGTCGATATTGTCCTCTTTAGGTTTTTTCTTTTGGGCTTCCCTTCAAAGTTTTTAAAACGTGTTGCTAGGGAGAAGTTTTCACACCCTTATAAAGAGTGCTTCGTTCCCCTCTCCAATTGATGTGGGATCTCACAATCTACCCCCTTCGGGGCTAGCGTTCTCGTGGGCACTTGTTCCCCTCTCCAATCGATGTGGGATCTCACAATCTACCTCTCTTCGGGGCTCAACGTCCTTGCTGGCACCCCGCCCAGTGTCCACCCCATTGGCGGCTCTGATACCATTTGTAACAACTCAAACCCACCGCTAGCAGATATTATTATCTTTGGGCTTTCCCTTTTGGACTTCCCCTCAAGGTTTTTAAAACGCGTCTGCTAGGGAGAGGTTTCCACACCTTATAAAGAATACTTCGTTCCCCTTTCCAACCGATGTAGGATCTCACACGCATCAATTGAATTTTGTTTACAAGAAACTGCAGCTACTCTATGTGATATTTGCAAGATCCCACATCGGTTGGAGAGAGGAACAAGACATTCTTTATAAAGATGTGGAAACTTCTATCTAGCAGATGCGTTTTAAAACCTTGAGAGAAAGCCTGAAAGGGAAAGCCCAAAAAGAACAATATTTGCTAGGGTGAGCTTGAACTACTGCAATATATGTCCCCAATCCCCTCATTTTTCTGGTAGATCGAGTTCATTTTACCATATAGTCATGTTGTGTGGGACTAAAGCATTGCTATTGGTGAATTAAAACTGTGTTCAAATAATGAACCATTCCTGTAGATTTCTTCCCCAAAGTAAACCTTTTACCAACTTACTTTCATATAATTGGAGATCTGAGCATCTGTTATCTTTATTTTACATAATGCAGAAATGGTGTAAGGCATGTGTTCTTCTCGAGGGCCTCAACCGAGGTTTGCCGAAGTTGGGTATTGGGCGGAGTCGAGGTCTTGACAACGAGACGGAGAAGAGGGAAATGAAGGGAAGAAGTAGTGATGGACAAACGAGAAGCATTGAGAGCAAACAGTGTGGCACTCTGGACTTCTGAAGCTTTTCTGCATTCTAAGCTGTAGCAATGGTTATCAAATATCAGATGAAAACCGAGGATTTATCGAACAAGAATCGGCATGCGTTAACGACATTCTTCGTTGCTTCGGTTCAATGATCTCAGCTTCTGTTGAAGATAAGAGAGATGCAAATGGAGAAAAAGAAATAGATCGGCAGACCTAATACACACTGAAAGATATTATCATTACCTAGAGCCAAAACTTGCACCATACCTAACTTGTGGATATGGTTCGTTTTAATTTGTTATGTATTCTCATCATTCTCGTGATTATAAATCTATTCAAGAGAAGTTTTCACACCCTTATAAGGAATGCTTCATTTTGGGAGAAGTTTTTACACTTTTAAGGAAAATTTTCAATATTTCTTTCCCCT

mRNA sequence

CTCCCTCCGCCTCCGAAATAATTGGCTTGACACCTTCGTTAACCGTAAAACCCGAGCTTTCATGACCTTTCGGCACCAATAAGCCATCAAACCGACGATGGAAGAAGCCGGCGCCAAACCTAGGAAGGGCGTCTCCTGCCTTTGCTGCATATGCGACAACAGGAAAGCTGCTCTCAAGAGGCCAAAAACCCTGCAACAGATATGCAGAGAATGCTTCTATGAGGTCTTTGAAGAGGAGATCCATCAAGTTATTGTGAAGAATCACTTGTTCAGACCAGGGGAACGCATTGCTGTTGGTGCCTCTGGTGGAAAAGATTCTACTGTTCTTGCATATGTGTTATCGGAATTGAATCGGCGGCACAATTATGGTTTAGACCTCTTTCTTTTATCAGTTGATGAGGGCATCACTGGATACAGAGATGACTCTCTTGAAACTGTGAAAAGAAATGAAATTCAGTATGGATTGCCACTACAAATTGTATCATACAAGGATTTATATGGATGGACAATGGATGAGATAGTGAAGATGATTGGCTTAAAGAATAATTGCACCTTTTGTGGAGTTTTCCGTCGGCAGGCTCTTGATAGAGGTGCTGCACTGTTGAAAGTAGACAAGCTTGCCACCGGACACAATGCAGATGACATGGCTGAAACGGTTCTGTTGAATATATTACGAGGCGACATAGCAAGATTGAGTCGATGTACTGCTATAATAACCGGTGAAGATGGACCGATTCCAAGATGCAAACCTTTCAAGTACACATATGAAAAGGAGATAGTTATGTATGCTTATTTTAAGAAGCTCGACTACTTCTCCACCGAGTGCATTTATTCTCCTAATGCTTATCGTGGTTTCGCTCGTGAATTTATCAAGGACTTGGAACGAATCAGACCTAGGGCCATTCTCGACATCATTAAATCGGGCGAGGATTTCAGGATTTCCACTTCGACAAAAATGCCCGAGCAAGGGACATGTGAACGATGCGGCTACATTTCAAGCCAGAAATGGTGTAAGGCATGTGTTCTTCTCGAGGGCCTCAACCGAGGTTTGCCGAAGTTGGGTATTGGGCGGAGTCGAGGTCTTGACAACGAGACGGAGAAGAGGGAAATGAAGGGAAGAAGTAGTGATGGACAAACGAGAAGCATTGAGAGCAAACAGTGTGGCACTCTGGACTTCTGAAGCTTTTCTGCATTCTAAGCTGTAGCAATGGTTATCAAATATCAGATGAAAACCGAGGATTTATCGAACAAGAATCGGCATGCGTTAACGACATTCTTCGTTGCTTCGGTTCAATGATCTCAGCTTCTGTTGAAGATAAGAGAGATGCAAATGGAGAAAAAGAAATAGATCGGCAGACCTAATACACACTGAAAGATATTATCATTACCTAGAGCCAAAACTTGCACCATACCTAACTTGTGGATATGGTTCGTTTTAATTTGTTATGTATTCTCATCATTCTCGTGATTATAAATCTATTCAAGAGAAGTTTTCACACCCTTATAAGGAATGCTTCATTTTGGGAGAAGTTTTTACACTTTTAAGGAAAATTTTCAATATTTCTTTCCCCT

Coding sequence (CDS)

ATGGAAGAAGCCGGCGCCAAACCTAGGAAGGGCGTCTCCTGCCTTTGCTGCATATGCGACAACAGGAAAGCTGCTCTCAAGAGGCCAAAAACCCTGCAACAGATATGCAGAGAATGCTTCTATGAGGTCTTTGAAGAGGAGATCCATCAAGTTATTGTGAAGAATCACTTGTTCAGACCAGGGGAACGCATTGCTGTTGGTGCCTCTGGTGGAAAAGATTCTACTGTTCTTGCATATGTGTTATCGGAATTGAATCGGCGGCACAATTATGGTTTAGACCTCTTTCTTTTATCAGTTGATGAGGGCATCACTGGATACAGAGATGACTCTCTTGAAACTGTGAAAAGAAATGAAATTCAGTATGGATTGCCACTACAAATTGTATCATACAAGGATTTATATGGATGGACAATGGATGAGATAGTGAAGATGATTGGCTTAAAGAATAATTGCACCTTTTGTGGAGTTTTCCGTCGGCAGGCTCTTGATAGAGGTGCTGCACTGTTGAAAGTAGACAAGCTTGCCACCGGACACAATGCAGATGACATGGCTGAAACGGTTCTGTTGAATATATTACGAGGCGACATAGCAAGATTGAGTCGATGTACTGCTATAATAACCGGTGAAGATGGACCGATTCCAAGATGCAAACCTTTCAAGTACACATATGAAAAGGAGATAGTTATGTATGCTTATTTTAAGAAGCTCGACTACTTCTCCACCGAGTGCATTTATTCTCCTAATGCTTATCGTGGTTTCGCTCGTGAATTTATCAAGGACTTGGAACGAATCAGACCTAGGGCCATTCTCGACATCATTAAATCGGGCGAGGATTTCAGGATTTCCACTTCGACAAAAATGCCCGAGCAAGGGACATGTGAACGATGCGGCTACATTTCAAGCCAGAAATGGTGTAAGGCATGTGTTCTTCTCGAGGGCCTCAACCGAGGTTTGCCGAAGTTGGGTATTGGGCGGAGTCGAGGTCTTGACAACGAGACGGAGAAGAGGGAAATGAAGGGAAGAAGTAGTGATGGACAAACGAGAAGCATTGAGAGCAAACAGTGTGGCACTCTGGACTTCTGA

Protein sequence

MEEAGAKPRKGVSCLCCICDNRKAALKRPKTLQQICRECFYEVFEEEIHQVIVKNHLFRPGERIAVGASGGKDSTVLAYVLSELNRRHNYGLDLFLLSVDEGITGYRDDSLETVKRNEIQYGLPLQIVSYKDLYGWTMDEIVKMIGLKNNCTFCGVFRRQALDRGAALLKVDKLATGHNADDMAETVLLNILRGDIARLSRCTAIITGEDGPIPRCKPFKYTYEKEIVMYAYFKKLDYFSTECIYSPNAYRGFAREFIKDLERIRPRAILDIIKSGEDFRISTSTKMPEQGTCERCGYISSQKWCKACVLLEGLNRGLPKLGIGRSRGLDNETEKREMKGRSSDGQTRSIESKQCGTLDF

Homology

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BLAST of CmaCh12G003830.1 vs. Swiss-Prot
Match: CTU1_ARATH (Cytoplasmic tRNA 2-thiolation protein 1 OS=Arabidopsis thaliana GN=NCS6 PE=2 SV=2)

HSP 1 Score: 635.2 bits (1637), Expect = 4.4e-181
Identity = 309/356 (86.80%), Postives = 331/356 (92.98%), Query Frame = 1


Query: 6   AKPRKGV-SCLCCICDNRKAALKRPKTLQQICRECFYEVFEEEIHQVIVKNHLFRPGERI 65
           AK +K V S LCC+C+ R+  LKRPKTLQQICRECFYEVFEEEIHQVIV+N LF+ GER+
Sbjct: 3   AKNKKAVASRLCCLCNLRRPVLKRPKTLQQICRECFYEVFEEEIHQVIVQNRLFKSGERV 62

Query: 66  AVGASGGKDSTVLAYVLSELNRRHNYGLDLFLLSVDEGITGYRDDSLETVKRNEIQYGLP 125
           A+GASGGKDSTVLAYVLSELNRRHNYGLDLFLLS+DEGITGYRDDSLETVKRNE+QYGLP
Sbjct: 63  AIGASGGKDSTVLAYVLSELNRRHNYGLDLFLLSIDEGITGYRDDSLETVKRNEVQYGLP 122

Query: 126 LQIVSYKDLYGWTMDEIVKMIGLKNNCTFCGVFRRQALDRGAALLKVDKLATGHNADDMA 185
           L+IVSYKDLYGWTMDEIVKMIGLKNNCTFCGVFRRQALDRGAALLKV+KL TGHNADD+A
Sbjct: 123 LKIVSYKDLYGWTMDEIVKMIGLKNNCTFCGVFRRQALDRGAALLKVEKLVTGHNADDIA 182

Query: 186 ETVLLNILRGDIARLSRCTAIITGEDGPIPRCKPFKYTYEKEIVMYAYFKKLDYFSTECI 245
           ETVLLNILRGDIARLSRCT+I TGEDGPIPRCKPFKYTYEKEIVMYAYFKKLDYFSTECI
Sbjct: 183 ETVLLNILRGDIARLSRCTSITTGEDGPIPRCKPFKYTYEKEIVMYAYFKKLDYFSTECI 242

Query: 246 YSPNAYRGFAREFIKDLERIRPRAILDIIKSGEDFRISTSTKMPEQGTCERCGYISSQKW 305
           YSPNAYRGFAREFIKDLERIRPRAILDIIKSGEDFRI+T+TKMPEQGTCERCGYISSQKW
Sbjct: 243 YSPNAYRGFAREFIKDLERIRPRAILDIIKSGEDFRIATTTKMPEQGTCERCGYISSQKW 302

Query: 306 CKACVLLEGLNRGLPKLGIGRSRGLDNETEKREMKGRSSDGQTRSIESKQCGTLDF 361
           CKACVLLEGLNRGLPK+GIGR RG++ +  K   K  S     +SIESKQCG+LDF
Sbjct: 303 CKACVLLEGLNRGLPKMGIGRPRGVNGDHNKETKKPGS---VAKSIESKQCGSLDF 355

[Close]

BLAST of CmaCh12G003830.1 vs. Swiss-Prot
Match: CTU1_ORYSJ (Cytoplasmic tRNA 2-thiolation protein 1 OS=Oryza sativa subsp. japonica GN=NCS6 PE=2 SV=1)

HSP 1 Score: 595.9 bits (1535), Expect = 3.0e-169
Identity = 291/353 (82.44%), Postives = 315/353 (89.24%), Query Frame = 1


Query: 8   PRKGVSCLCCICDNRKAALKRPKTLQQICRECFYEVFEEEIHQVIVKNHLFRPGERIAVG 67
           P +  S LC  C  RKAALKRPKTL+QICRECFY VFE+EIHQ IV N+LF+PG+R+A+G
Sbjct: 12  PARAGSRLCTRCGERKAALKRPKTLEQICRECFYVVFEDEIHQTIVDNNLFKPGDRVAIG 71

Query: 68  ASGGKDSTVLAYVLSELNRRHNYGLDLFLLSVDEGITGYRDDSLETVKRNEIQYGLPLQI 127
           ASGGKDSTVLAYVLSELNRRH Y LDLFLLSVDEGITGYRDDSLETVKRNEIQYGLPL+I
Sbjct: 72  ASGGKDSTVLAYVLSELNRRHKYCLDLFLLSVDEGITGYRDDSLETVKRNEIQYGLPLKI 131

Query: 128 VSYKDLYGWTMDEIVKMIGLKNNCTFCGVFRRQALDRGAALLKVDKLATGHNADDMAETV 187
           VSYKDLYGWTMD+IVK IGLKNNCTFCGVFRRQALDRGAALLKVDK+ TGHNADD+AETV
Sbjct: 132 VSYKDLYGWTMDDIVKAIGLKNNCTFCGVFRRQALDRGAALLKVDKIVTGHNADDIAETV 191

Query: 188 LLNILRGDIARLSRCTAIITGEDGPIPRCKPFKYTYEKEIVMYAYFKKLDYFSTECIYSP 247
           LLNILRGDIARLSRCT I TGEDGPIPRCKPFKYTYEKEIVMYAYFKKLDYFSTECIYSP
Sbjct: 192 LLNILRGDIARLSRCTFITTGEDGPIPRCKPFKYTYEKEIVMYAYFKKLDYFSTECIYSP 251

Query: 248 NAYRGFAREFIKDLERIRPRAILDIIKSGEDFRISTSTKMPEQGTCERCGYISSQKWCKA 307
           NAYRGFAREFIKDLER+RPRAILDIIKSGE+FRIST+T+MPEQGTCERCGYISSQK CKA
Sbjct: 252 NAYRGFAREFIKDLERMRPRAILDIIKSGENFRISTTTRMPEQGTCERCGYISSQKLCKA 311

Query: 308 CVLLEGLNRGLPKLGIGRSRGLDNETEKREMKGRSSDGQTRSIESKQCGTLDF 361
           CVLL+GLNRGLPKLGIGR++G+       E +   S+    S++ K  G  DF
Sbjct: 312 CVLLDGLNRGLPKLGIGRTKGIAGGDGDCEQQATRSERNRSSLQGKH-GNFDF 363

[Close]

BLAST of CmaCh12G003830.1 vs. Swiss-Prot
Match: CTU1_CHLRE (Cytoplasmic tRNA 2-thiolation protein 1 OS=Chlamydomonas reinhardtii GN=NCS6 PE=3 SV=1)

HSP 1 Score: 494.2 bits (1271), Expect = 1.2e-138
Identity = 232/320 (72.50%), Postives = 270/320 (84.38%), Query Frame = 1


Query: 15  LCCICDNRKAALKRPKTLQQICRECFYEVFEEEIHQVIVKNHLFRPGERIAVGASGGKDS 74
           LC  C+  +A L RPKT +Q+CRECF+  FEEE+HQ IV N LF+ GER+AV ASGGKDS
Sbjct: 5   LCVRCNTSRAMLNRPKTQEQVCRECFFTAFEEEVHQTIVDNKLFKHGERLAVAASGGKDS 64

Query: 75  TVLAYVLSELNRRHNYGLDLFLLSVDEGITGYRDDSLETVKRNEIQYGLPLQIVSYKDLY 134
           TVLA+++S LN R+NYGLDLFLLS+DEGITGYRDDSLETVKRNE QYG+PL++VSYK+LY
Sbjct: 65  TVLAHIMSTLNARYNYGLDLFLLSIDEGITGYRDDSLETVKRNEQQYGIPLKVVSYKELY 124

Query: 135 GWTMDEIVKMIGLKNNCTFCGVFRRQALDRGAALLKVDKLATGHNADDMAETVLLNILRG 194
           GWTMDEIV  IG KNNCTFCGVFRRQALDRGA L+  +K+ATGHNADD+AETVLLNILRG
Sbjct: 125 GWTMDEIVSQIGTKNNCTFCGVFRRQALDRGAVLMGANKIATGHNADDVAETVLLNILRG 184

Query: 195 DIARLSRCTAIITGEDGPIPRCKPFKYTYEKEIVMYAYFKKLDYFSTECIYSPNAYRGFA 254
           D+ RL RC  IITGED  +PR KPFKY YEKEIV+YAY+KKLDYFSTECIY+P A RGFA
Sbjct: 185 DVPRLGRCANIITGEDSSLPRVKPFKYAYEKEIVLYAYYKKLDYFSTECIYAPFAARGFA 244

Query: 255 REFIKDLERIRPRAILDIIKSGEDFRISTST--KMPEQGTCERCGYISSQKWCKACVLLE 314
           REFIKDLE  RP AI+D+I+S EDF  + ++  K+P+  TCERCGYISSQ  CKACVLLE
Sbjct: 245 REFIKDLEAARPLAIIDVIRSAEDFVFAAASDEKLPQPRTCERCGYISSQPVCKACVLLE 304

Query: 315 GLNRGLPKLGIGRSRGLDNE 333
           GLNRG+P+LG+ R+RG   E
Sbjct: 305 GLNRGMPRLGVSRTRGRRGE 324

[Close]

BLAST of CmaCh12G003830.1 vs. Swiss-Prot
Match: CTU1_XENTR (Cytoplasmic tRNA 2-thiolation protein 1 OS=Xenopus tropicalis GN=ctu1 PE=2 SV=1)

HSP 1 Score: 489.2 bits (1258), Expect = 3.9e-137
Identity = 228/336 (67.86%), Postives = 272/336 (80.95%), Query Frame = 1


Query: 16  CCICDNRKAALKRPKTLQQICRECFYEVFEEEIHQVIVKNHLFRPGERIAVGASGGKDST 75
           C  C+ R+A L+RPKT   +C++CF+  FEEEIH  IV   LF PGE++ +GASGGKDST
Sbjct: 5   CSSCEERRAVLRRPKTGHSLCKDCFFHAFEEEIHHTIVSAKLFNPGEKVGIGASGGKDST 64

Query: 76  VLAYVLSELNRRHNYGLDLFLLSVDEGITGYRDDSLETVKRNEIQYGLPLQIVSYKDLYG 135
           VLA+VL  LN R+ YGLDL L+SVDEGI+GYRDDSLETVKRN+ QY LPL+IVSY++LYG
Sbjct: 65  VLAHVLKVLNERYAYGLDLILVSVDEGISGYRDDSLETVKRNQQQYELPLKIVSYQELYG 124

Query: 136 WTMDEIVKMIGLKNNCTFCGVFRRQALDRGAALLKVDKLATGHNADDMAETVLLNILRGD 195
           WTMD+IVK +GLKNNCTFCGVFRRQALDRGA +L V+K+ TGHNADD+AETVL+N LRGD
Sbjct: 125 WTMDQIVKQVGLKNNCTFCGVFRRQALDRGAMMLGVNKICTGHNADDIAETVLMNFLRGD 184

Query: 196 IARLSRCTAIITGEDGPIPRCKPFKYTYEKEIVMYAYFKKLDYFSTECIYSPNAYRGFAR 255
           IARL RCT+I TG +G IPRCKP KY YEKEIV+YAYFKKLDYFSTECIYSPNAYRG AR
Sbjct: 185 IARLRRCTSITTGSEGAIPRCKPLKYAYEKEIVLYAYFKKLDYFSTECIYSPNAYRGHAR 244

Query: 256 EFIKDLERIRPRAILDIIKSGEDFRISTSTKMPEQGTCERCGYISSQKWCKACVLLEGLN 315
            F+KDLE IRP +I+DII SGE+  +    +MP QGTC RCGYISSQ  CKACVLLEGLN
Sbjct: 245 AFLKDLEAIRPSSIMDIIHSGENLSVKEDVRMPVQGTCTRCGYISSQSLCKACVLLEGLN 304

Query: 316 RGLPKLGIGRSRGLDNETEKREMKGRSSDGQTRSIE 352
           RGLPKLGIG+   L ++   +E      + + ++++
Sbjct: 305 RGLPKLGIGKHHKLHHKLLSQEPLSEQEERKLKAVD 340

[Close]

BLAST of CmaCh12G003830.1 vs. Swiss-Prot
Match: CTU1_XENLA (Cytoplasmic tRNA 2-thiolation protein 1 OS=Xenopus laevis GN=ctu1 PE=2 SV=1)

HSP 1 Score: 486.5 bits (1251), Expect = 2.5e-136
Identity = 228/335 (68.06%), Postives = 271/335 (80.90%), Query Frame = 1


Query: 16  CCICDNRKAALKRPKTLQQICRECFYEVFEEEIHQVIVKNHLFRPGERIAVGASGGKDST 75
           C  C+  +A L+RPKT   +C++CF+  FEEEIH  IV   LF PGE++ +GASGGKDST
Sbjct: 5   CSSCEEWRAVLRRPKTGHSLCKDCFFYAFEEEIHNTIVSAKLFHPGEKVGIGASGGKDST 64

Query: 76  VLAYVLSELNRRHNYGLDLFLLSVDEGITGYRDDSLETVKRNEIQYGLPLQIVSYKDLYG 135
           VLA+V+  LN R+ YGLDL LLSVDEGI+GYRDDSL+TVKRN+ QY LPL+IVSY +LYG
Sbjct: 65  VLAHVMKVLNERYAYGLDLILLSVDEGISGYRDDSLQTVKRNQQQYELPLKIVSYLELYG 124

Query: 136 WTMDEIVKMIGLKNNCTFCGVFRRQALDRGAALLKVDKLATGHNADDMAETVLLNILRGD 195
           WTMD+IVK +GLKNNCTFCGVFRRQALDRGA +L ++K+ TGHNADD+AETVL+N LRGD
Sbjct: 125 WTMDQIVKQVGLKNNCTFCGVFRRQALDRGAMMLGINKICTGHNADDIAETVLMNFLRGD 184

Query: 196 IARLSRCTAIITGEDGPIPRCKPFKYTYEKEIVMYAYFKKLDYFSTECIYSPNAYRGFAR 255
           IARL RCTAI TG +G IPRCKP KYTYEKEIV+YAYFKKLDYFSTECIYSPNAYRG AR
Sbjct: 185 IARLRRCTAITTGSEGAIPRCKPLKYTYEKEIVLYAYFKKLDYFSTECIYSPNAYRGHAR 244

Query: 256 EFIKDLERIRPRAILDIIKSGEDFRISTSTKMPEQGTCERCGYISSQKWCKACVLLEGLN 315
            F+KDLE IRP +I+DII SGE+  ++   +MP QGTC RCGYISSQ  CKACVLLEGLN
Sbjct: 245 VFLKDLEAIRPSSIIDIIHSGENLSVNEDVRMPVQGTCTRCGYISSQSLCKACVLLEGLN 304

Query: 316 RGLPKLGIGRSRGLDNETEKREMKGRSSDGQTRSI 351
           RGLPKLGIG+   L ++   +E      + + R++
Sbjct: 305 RGLPKLGIGKHHKLHHKLLSQEPLSEQEERKLRAV 339

[Close]

BLAST of CmaCh12G003830.1 vs. TrEMBL
Match: A0A0A0LKF0_CUCSA (Cytoplasmic tRNA 2-thiolation protein 1 OS=Cucumis sativus GN=NCS6 PE=3 SV=1)

HSP 1 Score: 686.0 bits (1769), Expect = 2.4e-194
Identity = 339/360 (94.17%), Postives = 348/360 (96.67%), Query Frame = 1


Query: 1   MEEAGAKPRKGVSCLCCICDNRKAALKRPKTLQQICRECFYEVFEEEIHQVIVKNHLFRP 60
           MEEA  KP++ VS LCC+C+NRKAALKRPKTLQQICRECFYEVFEEEIHQVIVKN LFRP
Sbjct: 1   MEEAAPKPKRAVSSLCCLCNNRKAALKRPKTLQQICRECFYEVFEEEIHQVIVKNQLFRP 60

Query: 61  GERIAVGASGGKDSTVLAYVLSELNRRHNYGLDLFLLSVDEGITGYRDDSLETVKRNEIQ 120
           GERIAVGASGGKDSTVLAYVLSELN+RHNYGLDLFLLSVDEGITGYRDDSLETVKRNEIQ
Sbjct: 61  GERIAVGASGGKDSTVLAYVLSELNQRHNYGLDLFLLSVDEGITGYRDDSLETVKRNEIQ 120

Query: 121 YGLPLQIVSYKDLYGWTMDEIVKMIGLKNNCTFCGVFRRQALDRGAALLKVDKLATGHNA 180
           YGLPLQIVSYKDLYGWTMDEIVKMIGLKNNCTFCGVFRRQALDRGAALLKVDKLATGHNA
Sbjct: 121 YGLPLQIVSYKDLYGWTMDEIVKMIGLKNNCTFCGVFRRQALDRGAALLKVDKLATGHNA 180

Query: 181 DDMAETVLLNILRGDIARLSRCTAIITGEDGPIPRCKPFKYTYEKEIVMYAYFKKLDYFS 240
           DDMAETVLLNILRGDIARLSRCTAIITGEDGPIPRCKPFKYTYEKEIVMYAYFKKLDYFS
Sbjct: 181 DDMAETVLLNILRGDIARLSRCTAIITGEDGPIPRCKPFKYTYEKEIVMYAYFKKLDYFS 240

Query: 241 TECIYSPNAYRGFAREFIKDLERIRPRAILDIIKSGEDFRISTSTKMPEQGTCERCGYIS 300
           TECIYSPNAYRGFAREFIKDLERIRPRAILDIIKSGEDFRISTSTKMPEQGTCERCGYIS
Sbjct: 241 TECIYSPNAYRGFAREFIKDLERIRPRAILDIIKSGEDFRISTSTKMPEQGTCERCGYIS 300

Query: 301 SQKWCKACVLLEGLNRGLPKLGIGRSRGLDNETEKREMKGRSSDGQTRSIESKQCGTLDF 360
           SQKWCKACVLLEGLNRGLPKLGIGRSRGLD+E  KRE  G S++  TRSIESKQCG+LDF
Sbjct: 301 SQKWCKACVLLEGLNRGLPKLGIGRSRGLDSEG-KRETIG-SNNVHTRSIESKQCGSLDF 358

[Close]

BLAST of CmaCh12G003830.1 vs. TrEMBL
Match: A0A061FL46_THECC (Cytoplasmic tRNA 2-thiolation protein 1 OS=Theobroma cacao GN=NCS6 PE=3 SV=1)

HSP 1 Score: 657.9 bits (1696), Expect = 7.0e-186
Identity = 319/358 (89.11%), Postives = 339/358 (94.69%), Query Frame = 1


Query: 3   EAGAKPRKGVSCLCCICDNRKAALKRPKTLQQICRECFYEVFEEEIHQVIVKNHLFRPGE 62
           EA AKP+K    LCCIC+ R+A LKRPKTL+QICRECFYEVFEEEIHQVIV+N LF+PG+
Sbjct: 2   EADAKPKKSGPRLCCICNQRRAVLKRPKTLEQICRECFYEVFEEEIHQVIVENQLFKPGD 61

Query: 63  RIAVGASGGKDSTVLAYVLSELNRRHNYGLDLFLLSVDEGITGYRDDSLETVKRNEIQYG 122
           RIA+GASGGKDSTVLAYVLSELNRRHNYGLDLFLLSVDEGITGYRDDSLETVKRNE+QYG
Sbjct: 62  RIAIGASGGKDSTVLAYVLSELNRRHNYGLDLFLLSVDEGITGYRDDSLETVKRNELQYG 121

Query: 123 LPLQIVSYKDLYGWTMDEIVKMIGLKNNCTFCGVFRRQALDRGAALLKVDKLATGHNADD 182
           LPL+IVSYKDLYGWTMDEIVKMIGLKNNCTFCGVFRRQALDRGAALLKVDK+ATGHNADD
Sbjct: 122 LPLKIVSYKDLYGWTMDEIVKMIGLKNNCTFCGVFRRQALDRGAALLKVDKVATGHNADD 181

Query: 183 MAETVLLNILRGDIARLSRCTAIITGEDGPIPRCKPFKYTYEKEIVMYAYFKKLDYFSTE 242
           +AETVLLNILRGDIARLSRCT+I TGEDGPIPRCKPFKYTYEKEIVMYAYFKKLDYFSTE
Sbjct: 182 IAETVLLNILRGDIARLSRCTSITTGEDGPIPRCKPFKYTYEKEIVMYAYFKKLDYFSTE 241

Query: 243 CIYSPNAYRGFAREFIKDLERIRPRAILDIIKSGEDFRISTSTKMPEQGTCERCGYISSQ 302
           CIYSPNAYRGFAREFIKDLERIRPRAILDII SGE+FRISTSTKMPEQGTCERCGYISSQ
Sbjct: 242 CIYSPNAYRGFAREFIKDLERIRPRAILDIITSGENFRISTSTKMPEQGTCERCGYISSQ 301

Query: 303 KWCKACVLLEGLNRGLPKLGIGRSRGLDNETEKREMKGRSSDGQTRSIESKQCGTLDF 361
           KWCKACVLLEGLNRGLPKLGIGRSRGL+N+ +K   +G    G T+SIESKQCG+LDF
Sbjct: 302 KWCKACVLLEGLNRGLPKLGIGRSRGLNNDIKKDTKQG----GGTKSIESKQCGSLDF 355

[Close]

BLAST of CmaCh12G003830.1 vs. TrEMBL
Match: A0A0D2TMI2_GOSRA (Cytoplasmic tRNA 2-thiolation protein 1 OS=Gossypium raimondii GN=NCS6 PE=3 SV=1)

HSP 1 Score: 652.5 bits (1682), Expect = 3.0e-184
Identity = 314/358 (87.71%), Postives = 340/358 (94.97%), Query Frame = 1


Query: 3   EAGAKPRKGVSCLCCICDNRKAALKRPKTLQQICRECFYEVFEEEIHQVIVKNHLFRPGE 62
           EA +KP+K  + LCC+C+  +AALKRPKTL+QICRECFY VFEEEIHQVI++N LF+PGE
Sbjct: 2   EADSKPKKSGARLCCVCNQNRAALKRPKTLEQICRECFYAVFEEEIHQVILENQLFKPGE 61

Query: 63  RIAVGASGGKDSTVLAYVLSELNRRHNYGLDLFLLSVDEGITGYRDDSLETVKRNEIQYG 122
           RIA+GASGGKDSTVLAYVLSELNRRHNYGLDLFLLSVDEGITGYRDDSLETVKRNE+QYG
Sbjct: 62  RIAIGASGGKDSTVLAYVLSELNRRHNYGLDLFLLSVDEGITGYRDDSLETVKRNELQYG 121

Query: 123 LPLQIVSYKDLYGWTMDEIVKMIGLKNNCTFCGVFRRQALDRGAALLKVDKLATGHNADD 182
           LPL+IVSYKDLYGWTMDEIVKMIGLKNNCTFCGVFRRQALDRGAALLKVDK+ATGHNADD
Sbjct: 122 LPLKIVSYKDLYGWTMDEIVKMIGLKNNCTFCGVFRRQALDRGAALLKVDKVATGHNADD 181

Query: 183 MAETVLLNILRGDIARLSRCTAIITGEDGPIPRCKPFKYTYEKEIVMYAYFKKLDYFSTE 242
           +AETVLLNILRGDIARLSRCT+IITGEDGPIPRCKPFKYTYEKEIVMYAYFKKLDYFSTE
Sbjct: 182 IAETVLLNILRGDIARLSRCTSIITGEDGPIPRCKPFKYTYEKEIVMYAYFKKLDYFSTE 241

Query: 243 CIYSPNAYRGFAREFIKDLERIRPRAILDIIKSGEDFRISTSTKMPEQGTCERCGYISSQ 302
           CIYSPNAYRGFAREFIKDLERIRPRAILDIIKSGEDFRIST+TKMPEQGTCERCGYISSQ
Sbjct: 242 CIYSPNAYRGFAREFIKDLERIRPRAILDIIKSGEDFRISTTTKMPEQGTCERCGYISSQ 301

Query: 303 KWCKACVLLEGLNRGLPKLGIGRSRGLDNETEKREMKGRSSDGQTRSIESKQCGTLDF 361
           KWCKACVLLEGLNRGLPKLGIGR++GL+++ +    K R  D +T SIESKQCG+L+F
Sbjct: 302 KWCKACVLLEGLNRGLPKLGIGRNQGLNSDGK----KDRKRDSRTPSIESKQCGSLEF 355

[Close]

BLAST of CmaCh12G003830.1 vs. TrEMBL
Match: A0A067KKS9_JATCU (Cytoplasmic tRNA 2-thiolation protein 1 OS=Jatropha curcas GN=NCS6 PE=3 SV=1)

HSP 1 Score: 651.0 bits (1678), Expect = 8.6e-184
Identity = 315/360 (87.50%), Postives = 339/360 (94.17%), Query Frame = 1


Query: 1   MEEAGAKPRKGVSCLCCICDNRKAALKRPKTLQQICRECFYEVFEEEIHQVIVKNHLFRP 60
           MEEA  K ++  + LCC+C+ R+AALKRPKTL+QICRECFY+VFEEEIHQVIV N LF+P
Sbjct: 1   MEEADTKAKRTGARLCCLCNQRRAALKRPKTLEQICRECFYDVFEEEIHQVIVDNQLFKP 60

Query: 61  GERIAVGASGGKDSTVLAYVLSELNRRHNYGLDLFLLSVDEGITGYRDDSLETVKRNEIQ 120
           GER+ +GASGGKDSTVLAYVLSELNRRHNYGLDLFLLSVDEGITGYRDDSLETVKRNEIQ
Sbjct: 61  GERVGIGASGGKDSTVLAYVLSELNRRHNYGLDLFLLSVDEGITGYRDDSLETVKRNEIQ 120

Query: 121 YGLPLQIVSYKDLYGWTMDEIVKMIGLKNNCTFCGVFRRQALDRGAALLKVDKLATGHNA 180
           YGLPL+IVSYKDLYGWTMDEIVKMIGLKNNCTFCGVFRRQALDRGAA+LKVDKLATGHNA
Sbjct: 121 YGLPLKIVSYKDLYGWTMDEIVKMIGLKNNCTFCGVFRRQALDRGAAVLKVDKLATGHNA 180

Query: 181 DDMAETVLLNILRGDIARLSRCTAIITGEDGPIPRCKPFKYTYEKEIVMYAYFKKLDYFS 240
           DD+AETVLLNILRGDIARLSRCT+I TGEDGPIPRCKPFKYTYEKEIVMYAYFK+LDYFS
Sbjct: 181 DDIAETVLLNILRGDIARLSRCTSITTGEDGPIPRCKPFKYTYEKEIVMYAYFKRLDYFS 240

Query: 241 TECIYSPNAYRGFAREFIKDLERIRPRAILDIIKSGEDFRISTSTKMPEQGTCERCGYIS 300
           TECIYSPNAYRGFAREFIKDLERIRPRAILDIIKSGE+FRISTSTKMPEQGTCERCGYIS
Sbjct: 241 TECIYSPNAYRGFAREFIKDLERIRPRAILDIIKSGENFRISTSTKMPEQGTCERCGYIS 300

Query: 301 SQKWCKACVLLEGLNRGLPKLGIGRSRGLDNETEKREMKGRSSDGQTRSIESKQCGTLDF 360
           SQKWCKACVLLEGLNRGLPKLGIGRS+G+DN+  K ++K       T++IESKQCGTLDF
Sbjct: 301 SQKWCKACVLLEGLNRGLPKLGIGRSQGIDNDGRK-DVKDNHG---TKNIESKQCGTLDF 356

[Close]

BLAST of CmaCh12G003830.1 vs. TrEMBL
Match: M5XB75_PRUPE (Cytoplasmic tRNA 2-thiolation protein 1 OS=Prunus persica GN=NCS6 PE=3 SV=1)

HSP 1 Score: 649.0 bits (1673), Expect = 3.3e-183
Identity = 317/360 (88.06%), Postives = 337/360 (93.61%), Query Frame = 1


Query: 2   EEAGAKPRKGVSCLCCICDNRKAALKRPKTLQQICRECFYEVFEEEIHQVIVKNHLFRPG 61
           E A  K +K  + LCC+C  +KAALKRPKTL+QICRECFYEVFEEEIHQVIV+N LF+PG
Sbjct: 3   ESADGKAKKAGARLCCLCHQKKAALKRPKTLEQICRECFYEVFEEEIHQVIVENQLFKPG 62

Query: 62  ERIAVGASGGKDSTVLAYVLSELNRRHNYGLDLFLLSVDEGITGYRDDSLETVKRNEIQY 121
           ERIA+GASGGKDSTVLAYVLSELNRRHNYGLDLFLLSVDEGITGYRDDSLETVKRNEIQY
Sbjct: 63  ERIALGASGGKDSTVLAYVLSELNRRHNYGLDLFLLSVDEGITGYRDDSLETVKRNEIQY 122

Query: 122 GLPLQIVSYKDLYGWTMDEIVKMIGLKNNCTFCGVFRRQALDRGAALLKVDKLATGHNAD 181
           GLPL+IVSYKDLYGWTMDEIVKMIGLKNNCTFCGVFRRQALDRGAALLKVDKLATGHNAD
Sbjct: 123 GLPLKIVSYKDLYGWTMDEIVKMIGLKNNCTFCGVFRRQALDRGAALLKVDKLATGHNAD 182

Query: 182 DMAETVLLNILRGDIARLSRCTAIITGEDGPIPRCKPFKYTYEKEIV-MYAYFKKLDYFS 241
           D+AETVLLNILRGDIARLSRCT+I+TGEDGPIPRCKPFKYTYEKEI+  YAYFK+LDYFS
Sbjct: 183 DIAETVLLNILRGDIARLSRCTSIVTGEDGPIPRCKPFKYTYEKEIICTYAYFKRLDYFS 242

Query: 242 TECIYSPNAYRGFAREFIKDLERIRPRAILDIIKSGEDFRISTSTKMPEQGTCERCGYIS 301
           TECIYSPNAYRGFAREFIKDLERIRPRAILDIIKSGE+FRISTSTKMPEQGTCERCGYIS
Sbjct: 243 TECIYSPNAYRGFAREFIKDLERIRPRAILDIIKSGENFRISTSTKMPEQGTCERCGYIS 302

Query: 302 SQKWCKACVLLEGLNRGLPKLGIGRSRGLDNETEKREMKGRSSDGQTRSIESKQCGTLDF 361
           SQKWCKACVLLEGLNRGLPKLGIGR+RGL+N+ +K   K       T+SIESKQCGTLDF
Sbjct: 303 SQKWCKACVLLEGLNRGLPKLGIGRTRGLNNDDKKDTKKTNG----TKSIESKQCGTLDF 358

[Close]

BLAST of CmaCh12G003830.1 vs. TAIR10
Match: AT2G44270.2 (AT2G44270.2 repressor of lrx1)

HSP 1 Score: 597.0 bits (1538), Expect = 7.5e-171
Identity = 298/366 (81.42%), Postives = 321/366 (87.70%), Query Frame = 1


Query: 6   AKPRKGV-SCLCCICDNRKAALKRPKTLQQ----------ICRECFYEVFEEEIHQVIVK 65
           AK +K V S LCC+C+ R+  LKRPKTLQQ            RECFYEVFEEEIHQVIV+
Sbjct: 3   AKNKKAVASRLCCLCNLRRPVLKRPKTLQQQKLGTHFYTVSVRECFYEVFEEEIHQVIVQ 62

Query: 66  NHLFRPGERIAVGASGGKDSTVLAYVLSELNRRHNYGLDLFLLSVDEGITGYRDDSLETV 125
           N LF+ GER+A+GASGGKDSTVLAYVLSELNRRHNYGLDLFLLS+DEGITGYRDDSLETV
Sbjct: 63  NRLFKSGERVAIGASGGKDSTVLAYVLSELNRRHNYGLDLFLLSIDEGITGYRDDSLETV 122

Query: 126 KRNEIQYGLPLQIVSYKDLYGWTMDEIVKMIGLKNNCTFCGVFRRQALDRGAALLKVDKL 185
           KRNE+QYGLPL+IVSYKDLYGWTMDEIVKMIGLKNNCTFCGVFRRQALDRGAALLKV+KL
Sbjct: 123 KRNEVQYGLPLKIVSYKDLYGWTMDEIVKMIGLKNNCTFCGVFRRQALDRGAALLKVEKL 182

Query: 186 ATGHNADDMAETVLLNILRGDIARLSRCTAIITGEDGPIPRCKPFKYTYEKEIVMYAYFK 245
            TGHNADD+AETVLLNILRGDIARLSRCT+I TGEDGPIPRCKPF +TY       AYFK
Sbjct: 183 VTGHNADDIAETVLLNILRGDIARLSRCTSITTGEDGPIPRCKPFNFTY-------AYFK 242

Query: 246 KLDYFSTECIYSPNAYRGFAREFIKDLERIRPRAILDIIKSGEDFRISTSTKMPEQGTCE 305
           KLDYFSTECIYSPNAYRGFAREFIKDLERIRPRAILDIIKSGEDFRI+T+TKMPEQGTCE
Sbjct: 243 KLDYFSTECIYSPNAYRGFAREFIKDLERIRPRAILDIIKSGEDFRIATTTKMPEQGTCE 302

Query: 306 RCGYISSQKWCKACVLLEGLNRGLPKLGIGRSRGLDNETEKREMKGRSSDGQTRSIESKQ 361
           RCGYISSQKWCKACVLLEGLNRGLPK+GIGR RG++ +  K   K  S     +SIESKQ
Sbjct: 303 RCGYISSQKWCKACVLLEGLNRGLPKMGIGRPRGVNGDHNKETKKPGS---VAKSIESKQ 358

[Close]

BLAST of CmaCh12G003830.1 vs. TAIR10
Match: AT1G76170.1 (AT1G76170.1 2-thiocytidine tRNA biosynthesis protein, TtcA)

HSP 1 Score: 583.9 bits (1504), Expect = 6.5e-167
Identity = 283/323 (87.62%), Postives = 305/323 (94.43%), Query Frame = 1


Query: 38  ECFYEVFEEEIHQVIVKNHLFRPGERIAVGASGGKDSTVLAYVLSELNRRHNYGLDLFLL 97
           ECFYEVFEEEIHQVIV N LF+ GER+A+GASGGKDS+VLAYVLSELNRRH+YGLDLFLL
Sbjct: 14  ECFYEVFEEEIHQVIVGNRLFKFGERVAIGASGGKDSSVLAYVLSELNRRHSYGLDLFLL 73

Query: 98  SVDEGITGYRDDSLETVKRNEIQYGLPLQIVSYKDLYGWTMDEIVKMIGLKNNCTFCGVF 157
           S+DEGITGYRDDSLETVKRNE+QYGLPLQIVSYKDLYGWTMDEIVKMIGLKNNCTFCGVF
Sbjct: 74  SIDEGITGYRDDSLETVKRNEVQYGLPLQIVSYKDLYGWTMDEIVKMIGLKNNCTFCGVF 133

Query: 158 RRQALDRGAALLKVDKLATGHNADDMAETVLLNILRGDIARLSRCTAIITGEDGPIPRCK 217
           RRQALDRGAALLKVDKL TGHNADD+AETV+LNILRGDIARLSRCT+I TGEDGPIPRCK
Sbjct: 134 RRQALDRGAALLKVDKLVTGHNADDIAETVVLNILRGDIARLSRCTSITTGEDGPIPRCK 193

Query: 218 PFKYTYEKEIVMYAYFKKLDYFSTECIYSPNAYRGFAREFIKDLERIRPRAILDIIKSGE 277
           PFKYTYEKEIVMYAYFKKLDYFSTECIYSPNAYRGFA EFI DLER+RPRAILDIIKSGE
Sbjct: 194 PFKYTYEKEIVMYAYFKKLDYFSTECIYSPNAYRGFACEFINDLERLRPRAILDIIKSGE 253

Query: 278 DFRISTSTKMPEQGTCERCGYISSQKWCKACVLLEGLNRGLPKLGIGRSRGLDNETEKRE 337
           DFRI+T+TKMPEQGTCERCGYISSQKWCKACVLLEGLNRGLPK+GIGR RG  N  + ++
Sbjct: 254 DFRIATTTKMPEQGTCERCGYISSQKWCKACVLLEGLNRGLPKMGIGRPRGNVN-GDYKD 313

Query: 338 MKGRSSDGQTRSIESKQCGTLDF 361
           +K RS+    ++IESKQCG+LDF
Sbjct: 314 IKARST---AKTIESKQCGSLDF 332

[Close]

BLAST of CmaCh12G003830.1 vs. NCBI nr
Match: gi|778670437|ref|XP_011649473.1| (PREDICTED: cytoplasmic tRNA 2-thiolation protein 1 [Cucumis sativus])

HSP 1 Score: 686.0 bits (1769), Expect = 3.5e-194
Identity = 339/360 (94.17%), Postives = 348/360 (96.67%), Query Frame = 1


Query: 1   MEEAGAKPRKGVSCLCCICDNRKAALKRPKTLQQICRECFYEVFEEEIHQVIVKNHLFRP 60
           MEEA  KP++ VS LCC+C+NRKAALKRPKTLQQICRECFYEVFEEEIHQVIVKN LFRP
Sbjct: 1   MEEAAPKPKRAVSSLCCLCNNRKAALKRPKTLQQICRECFYEVFEEEIHQVIVKNQLFRP 60

Query: 61  GERIAVGASGGKDSTVLAYVLSELNRRHNYGLDLFLLSVDEGITGYRDDSLETVKRNEIQ 120
           GERIAVGASGGKDSTVLAYVLSELN+RHNYGLDLFLLSVDEGITGYRDDSLETVKRNEIQ
Sbjct: 61  GERIAVGASGGKDSTVLAYVLSELNQRHNYGLDLFLLSVDEGITGYRDDSLETVKRNEIQ 120

Query: 121 YGLPLQIVSYKDLYGWTMDEIVKMIGLKNNCTFCGVFRRQALDRGAALLKVDKLATGHNA 180
           YGLPLQIVSYKDLYGWTMDEIVKMIGLKNNCTFCGVFRRQALDRGAALLKVDKLATGHNA
Sbjct: 121 YGLPLQIVSYKDLYGWTMDEIVKMIGLKNNCTFCGVFRRQALDRGAALLKVDKLATGHNA 180

Query: 181 DDMAETVLLNILRGDIARLSRCTAIITGEDGPIPRCKPFKYTYEKEIVMYAYFKKLDYFS 240
           DDMAETVLLNILRGDIARLSRCTAIITGEDGPIPRCKPFKYTYEKEIVMYAYFKKLDYFS
Sbjct: 181 DDMAETVLLNILRGDIARLSRCTAIITGEDGPIPRCKPFKYTYEKEIVMYAYFKKLDYFS 240

Query: 241 TECIYSPNAYRGFAREFIKDLERIRPRAILDIIKSGEDFRISTSTKMPEQGTCERCGYIS 300
           TECIYSPNAYRGFAREFIKDLERIRPRAILDIIKSGEDFRISTSTKMPEQGTCERCGYIS
Sbjct: 241 TECIYSPNAYRGFAREFIKDLERIRPRAILDIIKSGEDFRISTSTKMPEQGTCERCGYIS 300

Query: 301 SQKWCKACVLLEGLNRGLPKLGIGRSRGLDNETEKREMKGRSSDGQTRSIESKQCGTLDF 360
           SQKWCKACVLLEGLNRGLPKLGIGRSRGLD+E  KRE  G S++  TRSIESKQCG+LDF
Sbjct: 301 SQKWCKACVLLEGLNRGLPKLGIGRSRGLDSEG-KRETIG-SNNVHTRSIESKQCGSLDF 358

[Close]

BLAST of CmaCh12G003830.1 vs. NCBI nr
Match: gi|659089053|ref|XP_008445303.1| (PREDICTED: cytoplasmic tRNA 2-thiolation protein 1 [Cucumis melo])

HSP 1 Score: 684.5 bits (1765), Expect = 1.0e-193
Identity = 336/360 (93.33%), Postives = 347/360 (96.39%), Query Frame = 1


Query: 1   MEEAGAKPRKGVSCLCCICDNRKAALKRPKTLQQICRECFYEVFEEEIHQVIVKNHLFRP 60
           MEEAG KP++ VS LCC+C+NRKAALKRPKTLQQICRECFYEVFEEEIHQVIVKN LFRP
Sbjct: 1   MEEAGPKPKRPVSSLCCLCNNRKAALKRPKTLQQICRECFYEVFEEEIHQVIVKNQLFRP 60

Query: 61  GERIAVGASGGKDSTVLAYVLSELNRRHNYGLDLFLLSVDEGITGYRDDSLETVKRNEIQ 120
           GERIAVGASGGKDSTVLAYVLSELN+RHNYGLDLFLLSVDEGITGYRDDSLETVKRNEIQ
Sbjct: 61  GERIAVGASGGKDSTVLAYVLSELNQRHNYGLDLFLLSVDEGITGYRDDSLETVKRNEIQ 120

Query: 121 YGLPLQIVSYKDLYGWTMDEIVKMIGLKNNCTFCGVFRRQALDRGAALLKVDKLATGHNA 180
           YGLPLQIVSYKDLYGWTMDEIVKMIGLKNNCTFCGVFRRQALDRGAA LKVDKLATGHNA
Sbjct: 121 YGLPLQIVSYKDLYGWTMDEIVKMIGLKNNCTFCGVFRRQALDRGAAWLKVDKLATGHNA 180

Query: 181 DDMAETVLLNILRGDIARLSRCTAIITGEDGPIPRCKPFKYTYEKEIVMYAYFKKLDYFS 240
           DDMAETVLLNILRGDIARLSRCTAIITGEDGPIPRCKPFKYTYEKEIVMYAYFKKLDYFS
Sbjct: 181 DDMAETVLLNILRGDIARLSRCTAIITGEDGPIPRCKPFKYTYEKEIVMYAYFKKLDYFS 240

Query: 241 TECIYSPNAYRGFAREFIKDLERIRPRAILDIIKSGEDFRISTSTKMPEQGTCERCGYIS 300
           TECIYSPNAYRGFAREFIKDLERIRPRAILDIIKSGEDFRISTSTKMPEQGTCERCGYIS
Sbjct: 241 TECIYSPNAYRGFAREFIKDLERIRPRAILDIIKSGEDFRISTSTKMPEQGTCERCGYIS 300

Query: 301 SQKWCKACVLLEGLNRGLPKLGIGRSRGLDNETEKREMKGRSSDGQTRSIESKQCGTLDF 360
           SQKWCKACVLLEGLNRGLPKLGIGRSRGLD+E +K  +   S++  TRSIESKQCG+LDF
Sbjct: 301 SQKWCKACVLLEGLNRGLPKLGIGRSRGLDSEGKKETI--GSNNVHTRSIESKQCGSLDF 358

[Close]

BLAST of CmaCh12G003830.1 vs. NCBI nr
Match: gi|590594814|ref|XP_007017959.1| (Repressor of lrx1 [Theobroma cacao])

HSP 1 Score: 657.9 bits (1696), Expect = 1.0e-185
Identity = 319/358 (89.11%), Postives = 339/358 (94.69%), Query Frame = 1


Query: 3   EAGAKPRKGVSCLCCICDNRKAALKRPKTLQQICRECFYEVFEEEIHQVIVKNHLFRPGE 62
           EA AKP+K    LCCIC+ R+A LKRPKTL+QICRECFYEVFEEEIHQVIV+N LF+PG+
Sbjct: 2   EADAKPKKSGPRLCCICNQRRAVLKRPKTLEQICRECFYEVFEEEIHQVIVENQLFKPGD 61

Query: 63  RIAVGASGGKDSTVLAYVLSELNRRHNYGLDLFLLSVDEGITGYRDDSLETVKRNEIQYG 122
           RIA+GASGGKDSTVLAYVLSELNRRHNYGLDLFLLSVDEGITGYRDDSLETVKRNE+QYG
Sbjct: 62  RIAIGASGGKDSTVLAYVLSELNRRHNYGLDLFLLSVDEGITGYRDDSLETVKRNELQYG 121

Query: 123 LPLQIVSYKDLYGWTMDEIVKMIGLKNNCTFCGVFRRQALDRGAALLKVDKLATGHNADD 182
           LPL+IVSYKDLYGWTMDEIVKMIGLKNNCTFCGVFRRQALDRGAALLKVDK+ATGHNADD
Sbjct: 122 LPLKIVSYKDLYGWTMDEIVKMIGLKNNCTFCGVFRRQALDRGAALLKVDKVATGHNADD 181

Query: 183 MAETVLLNILRGDIARLSRCTAIITGEDGPIPRCKPFKYTYEKEIVMYAYFKKLDYFSTE 242
           +AETVLLNILRGDIARLSRCT+I TGEDGPIPRCKPFKYTYEKEIVMYAYFKKLDYFSTE
Sbjct: 182 IAETVLLNILRGDIARLSRCTSITTGEDGPIPRCKPFKYTYEKEIVMYAYFKKLDYFSTE 241

Query: 243 CIYSPNAYRGFAREFIKDLERIRPRAILDIIKSGEDFRISTSTKMPEQGTCERCGYISSQ 302
           CIYSPNAYRGFAREFIKDLERIRPRAILDII SGE+FRISTSTKMPEQGTCERCGYISSQ
Sbjct: 242 CIYSPNAYRGFAREFIKDLERIRPRAILDIITSGENFRISTSTKMPEQGTCERCGYISSQ 301

Query: 303 KWCKACVLLEGLNRGLPKLGIGRSRGLDNETEKREMKGRSSDGQTRSIESKQCGTLDF 361
           KWCKACVLLEGLNRGLPKLGIGRSRGL+N+ +K   +G    G T+SIESKQCG+LDF
Sbjct: 302 KWCKACVLLEGLNRGLPKLGIGRSRGLNNDIKKDTKQG----GGTKSIESKQCGSLDF 355

[Close]

BLAST of CmaCh12G003830.1 vs. NCBI nr
Match: gi|1009151299|ref|XP_015893480.1| (PREDICTED: cytoplasmic tRNA 2-thiolation protein 1 [Ziziphus jujuba])

HSP 1 Score: 656.4 bits (1692), Expect = 2.9e-185
Identity = 319/359 (88.86%), Postives = 336/359 (93.59%), Query Frame = 1


Query: 2   EEAGAKPRKGVSCLCCICDNRKAALKRPKTLQQICRECFYEVFEEEIHQVIVKNHLFRPG 61
           EE  AKP+K     CC+C+ R+AALKRPKTL+QICRECFY VFEEEIHQVIV+N LF+PG
Sbjct: 3   EEGDAKPKKAGPRQCCVCNQRRAALKRPKTLEQICRECFYRVFEEEIHQVIVENQLFKPG 62

Query: 62  ERIAVGASGGKDSTVLAYVLSELNRRHNYGLDLFLLSVDEGITGYRDDSLETVKRNEIQY 121
           ERIA+GASGGKDSTVLAYVLSELNRR+NYGLDLFLLSVDEGITGYRDDSLETVKRNEIQY
Sbjct: 63  ERIAIGASGGKDSTVLAYVLSELNRRNNYGLDLFLLSVDEGITGYRDDSLETVKRNEIQY 122

Query: 122 GLPLQIVSYKDLYGWTMDEIVKMIGLKNNCTFCGVFRRQALDRGAALLKVDKLATGHNAD 181
           GLPL++VSYKDLYGWTMDE+VKMIGLKNNCTFCGVFRRQALDRGAALLKVDKLATGHNAD
Sbjct: 123 GLPLKVVSYKDLYGWTMDEMVKMIGLKNNCTFCGVFRRQALDRGAALLKVDKLATGHNAD 182

Query: 182 DMAETVLLNILRGDIARLSRCTAIITGEDGPIPRCKPFKYTYEKEIVMYAYFKKLDYFST 241
           D+AETVLLNILRGDIARLSRCTAI TGEDGPIPRCKPFKYTYEKEIVMYAYFK+LDYFST
Sbjct: 183 DIAETVLLNILRGDIARLSRCTAITTGEDGPIPRCKPFKYTYEKEIVMYAYFKRLDYFST 242

Query: 242 ECIYSPNAYRGFAREFIKDLERIRPRAILDIIKSGEDFRISTSTKMPEQGTCERCGYISS 301
           ECIYSPNAYRGFAREFIKDLERIRPRAILDIIKSGEDFRISTSTKMPEQGTCERCGYISS
Sbjct: 243 ECIYSPNAYRGFAREFIKDLERIRPRAILDIIKSGEDFRISTSTKMPEQGTCERCGYISS 302

Query: 302 QKWCKACVLLEGLNRGLPKLGIGRSRGLDNETEKREMKGRSSDGQTRSIESKQCGTLDF 361
           QKWCKACVLLEGLNRGLPKLGIGRSRGL+ E  K   KG  +    RSIESKQCG+LDF
Sbjct: 303 QKWCKACVLLEGLNRGLPKLGIGRSRGLNQENSKDVKKGNGA----RSIESKQCGSLDF 357

[Close]

BLAST of CmaCh12G003830.1 vs. NCBI nr
Match: gi|645228821|ref|XP_008221174.1| (PREDICTED: cytoplasmic tRNA 2-thiolation protein 1 [Prunus mume])

HSP 1 Score: 653.7 bits (1685), Expect = 1.9e-184
Identity = 316/359 (88.02%), Postives = 338/359 (94.15%), Query Frame = 1


Query: 2   EEAGAKPRKGVSCLCCICDNRKAALKRPKTLQQICRECFYEVFEEEIHQVIVKNHLFRPG 61
           + A  K +K  + LCC+C  +KAALKRPKTL+QICRECFYEVFEEEIHQVIV+N LF+PG
Sbjct: 3   DSADVKAKKAGARLCCLCHQKKAALKRPKTLEQICRECFYEVFEEEIHQVIVENQLFKPG 62

Query: 62  ERIAVGASGGKDSTVLAYVLSELNRRHNYGLDLFLLSVDEGITGYRDDSLETVKRNEIQY 121
           ERIA+GASGGKDSTVLAYVLSELNRRHNYGLDLFLLSVDEGITGYRDDSLETVKRNEIQY
Sbjct: 63  ERIALGASGGKDSTVLAYVLSELNRRHNYGLDLFLLSVDEGITGYRDDSLETVKRNEIQY 122

Query: 122 GLPLQIVSYKDLYGWTMDEIVKMIGLKNNCTFCGVFRRQALDRGAALLKVDKLATGHNAD 181
           GLPL+IVSYKDLYGWTMDEIVKMIGLKNNCTFCGVFRRQALDRGAALLKVDK+ATGHNAD
Sbjct: 123 GLPLKIVSYKDLYGWTMDEIVKMIGLKNNCTFCGVFRRQALDRGAALLKVDKIATGHNAD 182

Query: 182 DMAETVLLNILRGDIARLSRCTAIITGEDGPIPRCKPFKYTYEKEIVMYAYFKKLDYFST 241
           D+AETVLLNILRGDIARLSRCT+I+TGEDGPIPRCKPFKYT+EKEIVMYAYFK+LDYFST
Sbjct: 183 DIAETVLLNILRGDIARLSRCTSIVTGEDGPIPRCKPFKYTFEKEIVMYAYFKRLDYFST 242

Query: 242 ECIYSPNAYRGFAREFIKDLERIRPRAILDIIKSGEDFRISTSTKMPEQGTCERCGYISS 301
           ECIYSPNAYRGFAREFIKDLERIRPRAILDIIKSGE+FRISTSTKMPEQGTCERCGYISS
Sbjct: 243 ECIYSPNAYRGFAREFIKDLERIRPRAILDIIKSGENFRISTSTKMPEQGTCERCGYISS 302

Query: 302 QKWCKACVLLEGLNRGLPKLGIGRSRGLDNETEKREMKGRSSDGQTRSIESKQCGTLDF 361
           QKWCKACVLLEGLNRGLPKLGIGR+RGL+N+ +K   K       T+SIESKQCGTLDF
Sbjct: 303 QKWCKACVLLEGLNRGLPKLGIGRTRGLNNDDKKDTKKNNG----TKSIESKQCGTLDF 357

The following BLAST results are available for this feature:

BLAST of CmaCh12G003830.1 vs. Swiss-Prot


Match Name	E-value	Identity	Description
CTU1_ARATH	4.4e-181	86.80	Cytoplasmic tRNA 2-thiolation protein 1 OS=Arabidopsis thaliana GN=NCS6 PE=2 SV=...	[more]
CTU1_ORYSJ	3.0e-169	82.44	Cytoplasmic tRNA 2-thiolation protein 1 OS=Oryza sativa subsp. japonica GN=NCS6 ...	[more]
CTU1_CHLRE	1.2e-138	72.50	Cytoplasmic tRNA 2-thiolation protein 1 OS=Chlamydomonas reinhardtii GN=NCS6 PE=...	[more]
CTU1_XENTR	3.9e-137	67.86	Cytoplasmic tRNA 2-thiolation protein 1 OS=Xenopus tropicalis GN=ctu1 PE=2 SV=1	[more]
CTU1_XENLA	2.5e-136	68.06	Cytoplasmic tRNA 2-thiolation protein 1 OS=Xenopus laevis GN=ctu1 PE=2 SV=1	[more]

BLAST of CmaCh12G003830.1 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0LKF0_CUCSA	2.4e-194	94.17	Cytoplasmic tRNA 2-thiolation protein 1 OS=Cucumis sativus GN=NCS6 PE=3 SV=1	[more]
A0A061FL46_THECC	7.0e-186	89.11	Cytoplasmic tRNA 2-thiolation protein 1 OS=Theobroma cacao GN=NCS6 PE=3 SV=1	[more]
A0A0D2TMI2_GOSRA	3.0e-184	87.71	Cytoplasmic tRNA 2-thiolation protein 1 OS=Gossypium raimondii GN=NCS6 PE=3 SV=1	[more]
A0A067KKS9_JATCU	8.6e-184	87.50	Cytoplasmic tRNA 2-thiolation protein 1 OS=Jatropha curcas GN=NCS6 PE=3 SV=1	[more]
M5XB75_PRUPE	3.3e-183	88.06	Cytoplasmic tRNA 2-thiolation protein 1 OS=Prunus persica GN=NCS6 PE=3 SV=1	[more]

BLAST of CmaCh12G003830.1 vs. TAIR10


Match Name	E-value	Identity	Description
AT2G44270.2	7.5e-171	81.42	repressor of lrx1	[more]
AT1G76170.1	6.5e-167	87.62	2-thiocytidine tRNA biosynthesis protein, TtcA	[more]

BLAST of CmaCh12G003830.1 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|778670437\|ref\|XP_011649473.1\|	3.5e-194	94.17	PREDICTED: cytoplasmic tRNA 2-thiolation protein 1 [Cucumis sativus]	[more]
gi\|659089053\|ref\|XP_008445303.1\|	1.0e-193	93.33	PREDICTED: cytoplasmic tRNA 2-thiolation protein 1 [Cucumis melo]	[more]
gi\|590594814\|ref\|XP_007017959.1\|	1.0e-185	89.11	Repressor of lrx1 [Theobroma cacao]	[more]
gi\|1009151299\|ref\|XP_015893480.1\|	2.9e-185	88.86	PREDICTED: cytoplasmic tRNA 2-thiolation protein 1 [Ziziphus jujuba]	[more]
gi\|645228821\|ref\|XP_008221174.1\|	1.9e-184	88.02	PREDICTED: cytoplasmic tRNA 2-thiolation protein 1 [Prunus mume]	[more]

Annotated Terms

The following terms have been associated with this mRNA:

Vocabulary: **INTERPRO**
Term	Definition
IPR000541	Ncs6/Tuc1/Ctu1
IPR011063	TilS/TtcA_N
IPR012089	2-thiocytidine tRNA biosynthesis protein, TtcA
IPR014729	Rossmann-like_a/b/a_fold

Vocabulary: **Molecular Function**
Term	Definition
GO:0000049	tRNA binding

Vocabulary: **Biological Process**
Term	Definition
GO:0002098	tRNA wobble uridine modification
GO:0034227	tRNA thio-modification
GO:0008033	tRNA processing

GO Annotation

GO Assignments

This mRNA is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008033	tRNA processing
biological_process	GO:0034227	tRNA thio-modification
biological_process	GO:0002098	tRNA wobble uridine modification
biological_process	GO:0032447	protein urmylation
cellular_component	GO:0005737	cytoplasm
molecular_function	GO:0000049	tRNA binding
molecular_function	GO:0016779	nucleotidyltransferase activity

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
CmaCh12G003830	CmaCh12G003830	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
CmaCh12G003830.1	CmaCh12G003830.1-protein	polypeptide

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
CmaCh12G003830.1.exon.1	CmaCh12G003830.1.exon.1	exon
CmaCh12G003830.1.exon.2	CmaCh12G003830.1.exon.2	exon
CmaCh12G003830.1.exon.3	CmaCh12G003830.1.exon.3	exon
CmaCh12G003830.1.exon.4	CmaCh12G003830.1.exon.4	exon
CmaCh12G003830.1.exon.5	CmaCh12G003830.1.exon.5	exon
CmaCh12G003830.1.exon.6	CmaCh12G003830.1.exon.6	exon
CmaCh12G003830.1.exon.7	CmaCh12G003830.1.exon.7	exon
CmaCh12G003830.1.exon.8	CmaCh12G003830.1.exon.8	exon
CmaCh12G003830.1.exon.9	CmaCh12G003830.1.exon.9	exon
CmaCh12G003830.1.exon.10	CmaCh12G003830.1.exon.10	exon

The following five_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
CmaCh12G003830.1.five_prime_UTR.1	CmaCh12G003830.1.five_prime_UTR.1	five_prime_UTR

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
CmaCh12G003830.1.CDS.1	CmaCh12G003830.1.CDS.1	CDS
CmaCh12G003830.1.CDS.2	CmaCh12G003830.1.CDS.2	CDS
CmaCh12G003830.1.CDS.3	CmaCh12G003830.1.CDS.3	CDS
CmaCh12G003830.1.CDS.4	CmaCh12G003830.1.CDS.4	CDS
CmaCh12G003830.1.CDS.5	CmaCh12G003830.1.CDS.5	CDS
CmaCh12G003830.1.CDS.6	CmaCh12G003830.1.CDS.6	CDS
CmaCh12G003830.1.CDS.7	CmaCh12G003830.1.CDS.7	CDS
CmaCh12G003830.1.CDS.8	CmaCh12G003830.1.CDS.8	CDS
CmaCh12G003830.1.CDS.9	CmaCh12G003830.1.CDS.9	CDS
CmaCh12G003830.1.CDS.10	CmaCh12G003830.1.CDS.10	CDS

The following three_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
CmaCh12G003830.1.three_prime_UTR.1	CmaCh12G003830.1.three_prime_UTR.1	three_prime_UTR

InterPro

Analysis Name: InterPro Annotations of Cucurbita maxima
Date Performed: 2017-05-20


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR000541	Cytoplasmic tRNA 2-thiolation protein 1	HAMAP	MF_03053	CTU1	coord: 14..326 score: 52
IPR000541	Cytoplasmic tRNA 2-thiolation protein 1	TIGRFAMs	TIGR00269	TIGR00269	coord: 213..313 score: 1.2
IPR011063	tRNA(Ile)-lysidine/2-thiocytidine synthase, N-terminal	PFAM	PF01171	ATP_bind_3	coord: 64..255 score: 2.2
IPR012089	2-thiocytidine tRNA biosynthesis protein, TtcA	PIR	PIRSF004976	ATPase_YdaO	coord: 12..323 score: 3.5E
IPR014729	Rossmann-like alpha/beta/alpha sandwich fold	GENE3D	G3DSA:3.40.50.620		coord: 46..231 score: 4.5
None	No IPR available	PANTHER	PTHR11807	ATPASES OF THE PP SUPERFAMILY-RELATED	coord: 15..355 score: 1.2E
None	No IPR available	PANTHER	PTHR11807:SF12	CYTOPLASMIC TRNA 2-THIOLATION PROTEIN 1	coord: 15..355 score: 1.2E
None	No IPR available	unknown	SSF52402	Adenine nucleotide alpha hydrolases-like	coord: 49..279 score: 1.37