CmaCh11G016980.1 (mRNA) Cucurbita maxima (Rimu) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CmaCh11G016980.1
Type	mRNA
Organism	Cucurbita maxima (Cucurbita maxima (Rimu))
Description	Protein Ycf2
Location	Cma_Chr11 : 11211689 .. 11212740 (-)
Sequence length	822

Genome Viewer

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSexon

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGGTTCCAATGTACAAGATCTTGTAGCACTTACCAATGAGACCCTATCGATTAGTATTATGCAGAAGAAATCAATTATAGACATTAATATAATTAGATCTGCTCTTCATAGACAAACTTGGGATTTGCGATCCCAGGTAAGATCGGTTCAGGATCATGGGATCCTTTTCTATCAGATAGGAAGGGCTATTGCACAAAATGTACTTCTAAGTAATTGCTCCATAGATCCTATATCTATCTACATGAAGAAGAAATCATGTAACAAAGGGGGTTCTTATTTGTACAAATGGTACTTCGAACTTGGAACGAGCATGAAGAAATTAACGATACTTCTTTATCTTTTGAGTTATTCTGCCGGATCGGTCGTTCAAGACCTTTGGTCTCTATCCGGACCCGATGAAAAAAATGGGATCACTTCTTATGGACTCATTGAGAATGATTCTGATCTAGTTCATGGCCTATTAGAAGTAGAAGACGCTCTGTTGGGATTGGGATCCTCACAAACAGAAAAAGATTGTAGTCGATTTGATATGATCGAGTGACATTGCTTCTTCAACTCAAACCCAGGAATCCCTTAGATATGATACAAAATGGATCTTGTTCTATCGTTGATCAGAGATTTCTCTATGAACAATACGAATCGGAGTTTGAAGAAGGGGAAGGAGGAGTCCTCGACCCGGCATAGATAGAGGAGGATTTATTCAATCACATAGTTTGGGCTCCTAGAATATGGCGCCCTTGGGGCTTTCTATTTGATTGTATCAAAAGGCCCAATGAATTGGGATTTCCCTATTGGGCTAGGTCATTTCGGGGCAAGTGGGTCATTTCTCATGAAGAGAATGATTCGGAGTTCTTGCAGAGTGGAACCGTGCAGTACCAGACACGAGATAGATTTTCCAACGAACAAGACTCTTTTCGTATAAGCCAATTCATTTGGGATCCTGCAGATCCACTCTTTTTCCTATTCAAAGATCAGCCTAAACTGGTGCCTGTTGTTGCACTGGGGACCGTTATACTAGGTGCTAAAGCATTGGTGTTTTGTATCCATTGA

mRNA sequence

ATGGGTTCCAATGTACAAGATCTTGTAGCACTTACCAATGAGACCCTATCGATTAGTATTATGCAGAAGAAATCAATTATAGACATTAATATAATTAGATCTGCTCTTCATAGACAAACTTGGGATTTGCGATCCCAGGTAAGATCGGTTCAGGATCATGGGATCCTTTTCTATCAGATAGGAAGGGCTATTGCACAAAATGTACTTCTAAGTAATTGCTCCATAGATCCTATATCTATCTACATGAAGAAGAAATCATGTAACAAAGGGGGTTCTTATTTGTACAAATGGTACTTCGAACTTGGAACGAGCATGAAGAAATTAACGATACTTCTTTATCTTTTGAGTTATTCTGCCGGATCGGTCGTTCAAGACCTTTGGTCTCTATCCGGACCCGATGAAAAAAATGGGATCACTTCTTATGGACTCATTGAGAATGATTCTGATCTAGTTCATGGCCTATTAGAAGTAGAAGACGCTCTGTTGGGATTGGGATCCTCACAAACAGAAAAAGATTGTAGTCGATTTGATATGATCGAGCCCAATGAATTGGGATTTCCCTATTGGGCTAGGTCATTTCGGGGCAAGTGGGTCATTTCTCATGAAGAGAATGATTCGGAGTTCTTGCAGAGTGGAACCGTGCAGTACCAGACACGAGATAGATTTTCCAACGAACAAGACTCTTTTCGTATAAGCCAATTCATTTGGGATCCTGCAGATCCACTCTTTTTCCTATTCAAAGATCAGCCTAAACTGGTGCCTGTTGTTGCACTGGGGACCGTTATACTAGGTGCTAAAGCATTGGTGTTTTGTATCCATTGA

Coding sequence (CDS)

ATGGGTTCCAATGTACAAGATCTTGTAGCACTTACCAATGAGACCCTATCGATTAGTATTATGCAGAAGAAATCAATTATAGACATTAATATAATTAGATCTGCTCTTCATAGACAAACTTGGGATTTGCGATCCCAGGTAAGATCGGTTCAGGATCATGGGATCCTTTTCTATCAGATAGGAAGGGCTATTGCACAAAATGTACTTCTAAGTAATTGCTCCATAGATCCTATATCTATCTACATGAAGAAGAAATCATGTAACAAAGGGGGTTCTTATTTGTACAAATGGTACTTCGAACTTGGAACGAGCATGAAGAAATTAACGATACTTCTTTATCTTTTGAGTTATTCTGCCGGATCGGTCGTTCAAGACCTTTGGTCTCTATCCGGACCCGATGAAAAAAATGGGATCACTTCTTATGGACTCATTGAGAATGATTCTGATCTAGTTCATGGCCTATTAGAAGTAGAAGACGCTCTGTTGGGATTGGGATCCTCACAAACAGAAAAAGATTGTAGTCGATTTGATATGATCGAGCCCAATGAATTGGGATTTCCCTATTGGGCTAGGTCATTTCGGGGCAAGTGGGTCATTTCTCATGAAGAGAATGATTCGGAGTTCTTGCAGAGTGGAACCGTGCAGTACCAGACACGAGATAGATTTTCCAACGAACAAGACTCTTTTCGTATAAGCCAATTCATTTGGGATCCTGCAGATCCACTCTTTTTCCTATTCAAAGATCAGCCTAAACTGGTGCCTGTTGTTGCACTGGGGACCGTTATACTAGGTGCTAAAGCATTGGTGTTTTGTATCCATTGA

Protein sequence

MGSNVQDLVALTNETLSISIMQKKSIIDINIIRSALHRQTWDLRSQVRSVQDHGILFYQIGRAIAQNVLLSNCSIDPISIYMKKKSCNKGGSYLYKWYFELGTSMKKLTILLYLLSYSAGSVVQDLWSLSGPDEKNGITSYGLIENDSDLVHGLLEVEDALLGLGSSQTEKDCSRFDMIEPNELGFPYWARSFRGKWVISHEENDSEFLQSGTVQYQTRDRFSNEQDSFRISQFIWDPADPLFFLFKDQPKLVPVVALGTVILGAKALVFCIH

Homology

[Close]

BLAST of CmaCh11G016980.1 vs. Swiss-Prot
Match: YCF2_DAUCA (Protein Ycf2 OS=Daucus carota GN=ycf2-A PE=3 SV=1)

HSP 1 Score: 341.7 bits (875), Expect = 7.6e-93
Identity = 199/328 (60.67%), Postives = 213/328 (64.94%), Query Frame = 1


Query: 1    MGSNVQDLVALTNETLSISIMQKKSIIDINIIRSALHRQTWDLRSQVRSVQDHGILFYQI 60
            MGSN +DLVALTNE LSISI QKKSIID N IRSA HRQTWDLRSQVRSVQDHGILFYQI
Sbjct: 1635 MGSNARDLVALTNEALSISITQKKSIIDTNTIRSAFHRQTWDLRSQVRSVQDHGILFYQI 1694

Query: 61   GRAIAQNVLLSNCSIDPISIYMKKKSCNKGGSYLYKWYFELGTSMKKLTILLYLLSYSAG 120
            GRA+AQNVLLSNC IDPISIY+KKKSCN+G SYLYKWYFELGTSMKKLTILLYLLS SAG
Sbjct: 1695 GRAVAQNVLLSNCPIDPISIYIKKKSCNEGDSYLYKWYFELGTSMKKLTILLYLLSCSAG 1754

Query: 121  SVVQDLWSLSGPDEKNGITSY-----------GLI-----------------ENDSDLVH 180
            SV QDLWSL GPDE+NGITSY           GL+                 + D+D V 
Sbjct: 1755 SVAQDLWSLPGPDERNGITSYGLVENDSDLVHGLLQVEGALVGSSRTEKDCSQFDNDRVT 1814

Query: 181  GLL------------------------------EVEDALLGLGSSQTEKDCSR------- 240
             LL                              E E+    L   Q E+D          
Sbjct: 1815 LLLRPEPRNPLDMMQNGSCSILDQRFLYEKNESEFEEGEGALDPQQIEEDLFNHIVWAPR 1874

Query: 241  --------FDMIE-PNELGFPYWARSFRGKWVISHEE-----NDSEFLQSGTVQYQTRDR 250
                    FD IE PNELGFPYW+RSFRGK ++  EE     NDSEFLQSGT+QYQTRDR
Sbjct: 1875 IWHPWGILFDCIERPNELGFPYWSRSFRGKRILYDEEDELQENDSEFLQSGTMQYQTRDR 1934

[Close]

BLAST of CmaCh11G016980.1 vs. Swiss-Prot
Match: YCF2_SPIOL (Protein Ycf2 OS=Spinacia oleracea GN=ycf2-A PE=3 SV=2)

HSP 1 Score: 333.6 bits (854), Expect = 2.1e-90
Identity = 198/327 (60.55%), Postives = 209/327 (63.91%), Query Frame = 1


Query: 1    MGSNVQDLVALTNETLSISIMQKKSIIDINIIRSALHRQTWDLRSQVRSVQDHGILFYQI 60
            MGSNV+DLVA  NE LSISI QKKSIID N IRSALHRQTWDLRSQVRSVQDHGILFYQI
Sbjct: 1677 MGSNVRDLVAFINEALSISITQKKSIIDTNTIRSALHRQTWDLRSQVRSVQDHGILFYQI 1736

Query: 61   GRAIAQNVLLSNCSIDPISIYMKKKSCNKGGSYLYKWYFELGTSMKKLTILLYLLSYSAG 120
            GRA+AQNVLLSNC IDPIS YMKKKSCN+G SYLYKWYFELGTSMKKLTILLYLLS SAG
Sbjct: 1737 GRAVAQNVLLSNCPIDPISTYMKKKSCNEGDSYLYKWYFELGTSMKKLTILLYLLSCSAG 1796

Query: 121  SVVQDLWSLSGPD-----------EKNGITSYGLIE-----------------ND----- 180
            SV QDLWSL GPD           E +    +GL+E                 ND     
Sbjct: 1797 SVAQDLWSLPGPDEKNGITSYGLVENDSYLVHGLLEVEGALVGSSRIEKACSQNDRVTLF 1856

Query: 181  -----------------SDLVHGLL------EVEDALLGLGSSQTEKDCSR--------- 240
                             S L H  L      E+E+    L   Q E+D            
Sbjct: 1857 LRPELRNPLDMMQNGSCSILDHRFLYEKYESELEEGEGALDPQQIEEDLFNHIVWAPRIW 1916

Query: 241  ------FDMIE-PNELGFPYWARSFRGKWVISH-----EENDSEFLQSGTVQYQTRDRFS 251
                  FD IE PNELGFPYWARSFRGK  I       +ENDSEFLQSGT+QYQTRDR S
Sbjct: 1917 NPWGFLFDCIERPNELGFPYWARSFRGKRSIYDKEDELQENDSEFLQSGTMQYQTRDRSS 1976

[Close]

BLAST of CmaCh11G016980.1 vs. Swiss-Prot
Match: YCF2_TOBAC (Protein Ycf2 OS=Nicotiana tabacum GN=ycf2-A PE=3 SV=2)

HSP 1 Score: 311.2 bits (796), Expect = 1.1e-83
Identity = 157/177 (88.70%), Postives = 165/177 (93.22%), Query Frame = 1


Query: 1    MGSNVQDLVALTNETLSISIMQKKSIIDINIIRSALHRQTWDLRSQVRSVQDHGILFYQI 60
            MGSN +DLVALTNE LSISI QKKSIID N IRSALHRQTWDLRSQVRSVQDHGILFYQI
Sbjct: 1841 MGSNARDLVALTNEVLSISITQKKSIIDTNTIRSALHRQTWDLRSQVRSVQDHGILFYQI 1900

Query: 61   GRAIAQNVLLSNCSIDPISIYMKKKSCNKGGSYLYKWYFELGTSMKKLTILLYLLSYSAG 120
            GRA+AQNVLLSNC IDPISIYMKKKSCN+G SYLYKWYFELGTSMK+LTILLYLLS SAG
Sbjct: 1901 GRAVAQNVLLSNCPIDPISIYMKKKSCNEGDSYLYKWYFELGTSMKRLTILLYLLSCSAG 1960

Query: 121  SVVQDLWSLSGPDEKNGITSYGLIENDSDLVHGLLEVEDALLGLGSSQTEKDCSRFD 178
            SV QDLWSLSGPDEKNGITSYGL+ENDSDLVHGLLEVE AL  +GSS+TEKDCS+FD
Sbjct: 1961 SVAQDLWSLSGPDEKNGITSYGLVENDSDLVHGLLEVEGAL--VGSSRTEKDCSQFD 2015

[Close]

BLAST of CmaCh11G016980.1 vs. Swiss-Prot
Match: YCF2_NICSY (Protein Ycf2 OS=Nicotiana sylvestris GN=ycf2-A PE=3 SV=1)

HSP 1 Score: 311.2 bits (796), Expect = 1.1e-83
Identity = 157/177 (88.70%), Postives = 165/177 (93.22%), Query Frame = 1


Query: 1    MGSNVQDLVALTNETLSISIMQKKSIIDINIIRSALHRQTWDLRSQVRSVQDHGILFYQI 60
            MGSN +DLVALTNE LSISI QKKSIID N IRSALHRQTWDLRSQVRSVQDHGILFYQI
Sbjct: 1841 MGSNARDLVALTNEVLSISITQKKSIIDTNTIRSALHRQTWDLRSQVRSVQDHGILFYQI 1900

Query: 61   GRAIAQNVLLSNCSIDPISIYMKKKSCNKGGSYLYKWYFELGTSMKKLTILLYLLSYSAG 120
            GRA+AQNVLLSNC IDPISIYMKKKSCN+G SYLYKWYFELGTSMK+LTILLYLLS SAG
Sbjct: 1901 GRAVAQNVLLSNCPIDPISIYMKKKSCNEGDSYLYKWYFELGTSMKRLTILLYLLSCSAG 1960

Query: 121  SVVQDLWSLSGPDEKNGITSYGLIENDSDLVHGLLEVEDALLGLGSSQTEKDCSRFD 178
            SV QDLWSLSGPDEKNGITSYGL+ENDSDLVHGLLEVE AL  +GSS+TEKDCS+FD
Sbjct: 1961 SVAQDLWSLSGPDEKNGITSYGLVENDSDLVHGLLEVEGAL--VGSSRTEKDCSQFD 2015

[Close]

BLAST of CmaCh11G016980.1 vs. Swiss-Prot
Match: YCF2_NICTO (Protein Ycf2 OS=Nicotiana tomentosiformis GN=ycf2-A PE=3 SV=1)

HSP 1 Score: 311.2 bits (796), Expect = 1.1e-83
Identity = 157/177 (88.70%), Postives = 165/177 (93.22%), Query Frame = 1


Query: 1    MGSNVQDLVALTNETLSISIMQKKSIIDINIIRSALHRQTWDLRSQVRSVQDHGILFYQI 60
            MGSN +DLVALTNE LSISI QKKSIID N IRSALHRQTWDLRSQVRSVQDHGILFYQI
Sbjct: 1841 MGSNARDLVALTNEVLSISITQKKSIIDTNTIRSALHRQTWDLRSQVRSVQDHGILFYQI 1900

Query: 61   GRAIAQNVLLSNCSIDPISIYMKKKSCNKGGSYLYKWYFELGTSMKKLTILLYLLSYSAG 120
            GRA+AQNVLLSNC IDPISIYMKKKSCN+G SYLYKWYFELGTSMK+LTILLYLLS SAG
Sbjct: 1901 GRAVAQNVLLSNCPIDPISIYMKKKSCNEGDSYLYKWYFELGTSMKRLTILLYLLSCSAG 1960

Query: 121  SVVQDLWSLSGPDEKNGITSYGLIENDSDLVHGLLEVEDALLGLGSSQTEKDCSRFD 178
            SV QDLWSLSGPDEKNGITSYGL+ENDSDLVHGLLEVE AL  +GSS+TEKDCS+FD
Sbjct: 1961 SVAQDLWSLSGPDEKNGITSYGLVENDSDLVHGLLEVEGAL--VGSSRTEKDCSQFD 2015

[Close]

BLAST of CmaCh11G016980.1 vs. TrEMBL
Match: A0A0C4FG85_9APIA (Protein Ycf2 OS=Crithmum maritimum GN=ycf2 PE=3 SV=1)

HSP 1 Score: 372.1 bits (954), Expect = 5.9e-100
Identity = 209/319 (65.52%), Postives = 220/319 (68.97%), Query Frame = 1


Query: 1    MGSNVQDLVALTNETLSISIMQKKSIIDINIIRSALHRQTWDLRSQVRSVQDHGILFYQI 60
            MGSN +DLVALTNE LSISI QKKSIID N IRSA HRQTWDLRSQVRSVQDHGILFYQI
Sbjct: 1646 MGSNARDLVALTNEALSISITQKKSIIDTNTIRSAFHRQTWDLRSQVRSVQDHGILFYQI 1705

Query: 61   GRAIAQNVLLSNCSIDPISIYMKKKSCNKGGSYLYKWYFELGTSMKKLTILLYLLSYSAG 120
            GRA+AQNVLLSNC IDPISIY+KKKSCN+G SYLYKWYFELGTSMKKLTILLYLLS SAG
Sbjct: 1706 GRAVAQNVLLSNCPIDPISIYIKKKSCNEGDSYLYKWYFELGTSMKKLTILLYLLSCSAG 1765

Query: 121  SVVQDLWSLSGPDEKNGITSYGLIENDSDLVHG--------------------------- 180
            SV QDLWSL GPDEKNGITSYGL+ENDSDLVHG                           
Sbjct: 1766 SVAQDLWSLPGPDEKNGITSYGLVENDSDLVHGLLQVEGALVGSSRTEKDCSQFDNDRVT 1825

Query: 181  -LLEVE-----------------DALLGLGS---SQTEKDCSR---------------FD 240
             LL  E                    LG G+    Q E+D                  FD
Sbjct: 1826 LLLRPEPRNPLDMMQNGSCSILDQRFLGEGALDPQQIEEDLFNHIVWAPRIWHPWGILFD 1885

Query: 241  MIE-PNELGFPYWARSFRGKWVISHEE-----NDSEFLQSGTVQYQTRDRFSNEQDSFRI 251
             IE PNELGFPYW+RSFRGK ++  EE     NDSEFLQSGT+QYQTRDR S EQ  FRI
Sbjct: 1886 CIERPNELGFPYWSRSFRGKRILYDEEDELQENDSEFLQSGTMQYQTRDRSSKEQGFFRI 1945

[Close]

BLAST of CmaCh11G016980.1 vs. TrEMBL
Match: A0A0C4FFD5_PETCR (Protein Ycf2 OS=Petroselinum crispum GN=ycf2 PE=3 SV=1)

HSP 1 Score: 369.8 bits (948), Expect = 2.9e-99
Identity = 208/319 (65.20%), Postives = 219/319 (68.65%), Query Frame = 1


Query: 1    MGSNVQDLVALTNETLSISIMQKKSIIDINIIRSALHRQTWDLRSQVRSVQDHGILFYQI 60
            MGSN +DLVALTNE LSISI QKKSIID N IRSA HRQTWDLRSQVRSVQDHGILFYQI
Sbjct: 1635 MGSNARDLVALTNEALSISITQKKSIIDTNTIRSAFHRQTWDLRSQVRSVQDHGILFYQI 1694

Query: 61   GRAIAQNVLLSNCSIDPISIYMKKKSCNKGGSYLYKWYFELGTSMKKLTILLYLLSYSAG 120
            GRA+AQNVLLSNC IDPISIY+KKKSCN+G SYLYKWYFELGTSMKKLTILLYLLS SAG
Sbjct: 1695 GRAVAQNVLLSNCPIDPISIYIKKKSCNEGDSYLYKWYFELGTSMKKLTILLYLLSCSAG 1754

Query: 121  SVVQDLWSLSGPDEKNGITSYGLIENDSDLVHG--------------------------- 180
            SV QDLWSL GPDEKNGITSYGL+ENDSDLVHG                           
Sbjct: 1755 SVAQDLWSLPGPDEKNGITSYGLVENDSDLVHGLLQVEGALVGSSRTEKDCSQFDNDRVT 1814

Query: 181  -LLEVE-----------------DALLGLGS---SQTEKDCSR---------------FD 240
             LL  E                    LG G+    Q E+D                  FD
Sbjct: 1815 LLLRPEPRNPLDMMQNGSCSILDQRFLGEGALDPQQIEEDLFNHIVWAPRIWHPWGILFD 1874

Query: 241  MIE-PNELGFPYWARSFRGKWVISHEE-----NDSEFLQSGTVQYQTRDRFSNEQDSFRI 251
             IE PNELGFPYW+RSFRGK ++  EE     NDSEFLQSGT+QYQTRDR   EQ  FRI
Sbjct: 1875 CIERPNELGFPYWSRSFRGKRILYDEEDELQENDSEFLQSGTMQYQTRDRSYKEQGFFRI 1934

[Close]

BLAST of CmaCh11G016980.1 vs. TrEMBL
Match: A0A125S165_FOEVU (Protein Ycf2 OS=Foeniculum vulgare GN=ycf2 PE=3 SV=1)

HSP 1 Score: 360.9 bits (925), Expect = 1.4e-96
Identity = 205/319 (64.26%), Postives = 217/319 (68.03%), Query Frame = 1


Query: 1    MGSNVQDLVALTNETLSISIMQKKSIIDINIIRSALHRQTWDLRSQVRSVQDHGILFYQI 60
            MGSN +DLVALTNE LSISI QKKSIID N IRSA HRQTWDLRSQVRSVQDHGILFYQI
Sbjct: 1673 MGSNARDLVALTNEALSISITQKKSIIDTNTIRSAFHRQTWDLRSQVRSVQDHGILFYQI 1732

Query: 61   GRAIAQNVLLSNCSIDPISIYMKKKSCNKGGSYLYKWYFELGTSMKKLTILLYLLSYSAG 120
            GRA+AQNVLLSNC IDPISIY+KKKSCN+G SYLYKWYFELGTSMKKLTILLYLLS SAG
Sbjct: 1733 GRAVAQNVLLSNCPIDPISIYIKKKSCNEGDSYLYKWYFELGTSMKKLTILLYLLSCSAG 1792

Query: 121  SVVQDLWSLSGPDEKNGITSYGLIEN----------------------------DSDLVH 180
            SV QDLWSL GPDEKNGITSYGL+EN                            D+D V 
Sbjct: 1793 SVAQDLWSLPGPDEKNGITSYGLVENDSDLVHGLLQVEGALVGSSRTEKDCSQFDNDRVT 1852

Query: 181  GLLEVE-----------------DALLGLGS---SQTEKDCSR---------------FD 240
             LL  E                    LG G+    Q E+D                  FD
Sbjct: 1853 LLLRPEPRNPLDMMQNGSCFILDQRFLGEGALDPQQIEEDLFNHIVWAPRIWHPWGILFD 1912

Query: 241  MIE-PNELGFPYWARSFRGKWVISHEE-----NDSEFLQSGTVQYQTRDRFSNEQDSFRI 251
             IE PNELGFPYW+RSFRGK ++  EE     NDSEFLQSGT+QYQTRDR S EQ  FRI
Sbjct: 1913 CIERPNELGFPYWSRSFRGKRILYDEEDELQENDSEFLQSGTMQYQTRDRSSKEQGFFRI 1972

[Close]

BLAST of CmaCh11G016980.1 vs. TrEMBL
Match: A9QAT2_ANEGR (Hypothetical chloroplast RF2 (Fragment) OS=Anethum graveolens GN=ycf2 PE=3 SV=1)

HSP 1 Score: 360.9 bits (925), Expect = 1.4e-96
Identity = 205/319 (64.26%), Postives = 217/319 (68.03%), Query Frame = 1


Query: 1    MGSNVQDLVALTNETLSISIMQKKSIIDINIIRSALHRQTWDLRSQVRSVQDHGILFYQI 60
            MGSN +DLVALTNE LSISI QKKSIID N IRSA HRQTWDLRSQVRSVQDHGILFYQI
Sbjct: 1646 MGSNARDLVALTNEALSISITQKKSIIDTNTIRSAFHRQTWDLRSQVRSVQDHGILFYQI 1705

Query: 61   GRAIAQNVLLSNCSIDPISIYMKKKSCNKGGSYLYKWYFELGTSMKKLTILLYLLSYSAG 120
            GRA+AQNVLLSNC IDPISIY+KKKSCN+G SYLYKWYFELGTSMKKLTILLYLLS SAG
Sbjct: 1706 GRAVAQNVLLSNCPIDPISIYIKKKSCNEGDSYLYKWYFELGTSMKKLTILLYLLSCSAG 1765

Query: 121  SVVQDLWSLSGPDEKNGITSYGLIEN----------------------------DSDLVH 180
            SV QDLWSL GPDEKNGITSYGL+EN                            D+D V 
Sbjct: 1766 SVAQDLWSLPGPDEKNGITSYGLVENDSDLVHGLLQVEGALVGSSRTEKDCSQFDNDRVT 1825

Query: 181  GLLEVE-----------------DALLGLGS---SQTEKDCSR---------------FD 240
             LL  E                    LG G+    Q E+D                  FD
Sbjct: 1826 LLLRPEPRNPLDMMQNGSCFILDQRFLGEGALDPQQIEEDLFNHIVWAPRIWHPWGILFD 1885

Query: 241  MIE-PNELGFPYWARSFRGKWVISHEE-----NDSEFLQSGTVQYQTRDRFSNEQDSFRI 251
             IE PNELGFPYW+RSFRGK ++  EE     NDSEFLQSGT+QYQTRDR S EQ  FRI
Sbjct: 1886 CIERPNELGFPYWSRSFRGKRILYDEEDELQENDSEFLQSGTMQYQTRDRSSKEQGFFRI 1945

[Close]

BLAST of CmaCh11G016980.1 vs. TrEMBL
Match: A0A0H3UNM7_SESMO (Protein Ycf2 OS=Seseli montanum GN=ycf2 PE=3 SV=1)

HSP 1 Score: 357.8 bits (917), Expect = 1.1e-95
Identity = 203/319 (63.64%), Postives = 216/319 (67.71%), Query Frame = 1


Query: 1    MGSNVQDLVALTNETLSISIMQKKSIIDINIIRSALHRQTWDLRSQVRSVQDHGILFYQI 60
            MGSN +DLVALTNE LSISI QKKSIID N IRSA HRQTWDLRSQVRSVQDHGILFYQI
Sbjct: 1647 MGSNARDLVALTNEALSISITQKKSIIDTNTIRSAFHRQTWDLRSQVRSVQDHGILFYQI 1706

Query: 61   GRAIAQNVLLSNCSIDPISIYMKKKSCNKGGSYLYKWYFELGTSMKKLTILLYLLSYSAG 120
            GRA+AQNVLLSNC IDPISIY+KKKSCN+G SYLYKWYFELGTSM KLTILLYLLS SAG
Sbjct: 1707 GRAVAQNVLLSNCPIDPISIYIKKKSCNEGDSYLYKWYFELGTSMNKLTILLYLLSCSAG 1766

Query: 121  SVVQDLWSLSGPDEKNGITSYGLIEN----------------------------DSDLVH 180
            SV QDLWSL GPDEKNGITSYGL+EN                            D+D V 
Sbjct: 1767 SVAQDLWSLPGPDEKNGITSYGLVENDSDLVHGLLQVEGALVGSSRTEKDCNQFDNDRVT 1826

Query: 181  GLLEVE-----------------DALLGLGS---SQTEKDCSR---------------FD 240
             LL  E                    LG G+    Q E+D                  FD
Sbjct: 1827 LLLRPEPRNPLDMMQNGSCSILDQRFLGEGALDPQQIEEDLFNHIVWAPRIWHPWGILFD 1886

Query: 241  MIE-PNELGFPYWARSFRGKWVISHEE-----NDSEFLQSGTVQYQTRDRFSNEQDSFRI 251
             IE PNELGFPYW+RSFRGK ++  EE     NDSEFLQSGT+QYQTRDR S +Q  FRI
Sbjct: 1887 CIERPNELGFPYWSRSFRGKRILYDEEDELQENDSEFLQSGTMQYQTRDRSSKDQGFFRI 1946

[Close]

BLAST of CmaCh11G016980.1 vs. TAIR10
Match: ATCG00860.1 (ATCG00860.1 Chloroplast Ycf2;ATPase, AAA type, core)

HSP 1 Score: 297.0 bits (759), Expect = 1.2e-80
Identity = 150/177 (84.75%), Postives = 160/177 (90.40%), Query Frame = 1


Query: 1    MGSNVQDLVALTNETLSISIMQKKSIIDINIIRSALHRQTWDLRSQVRSVQDHGILFYQI 60
            MGS+ +DLVALTNE LSISI QKKSIID N IRSALHRQTWDLRSQVRSVQDHGILFYQI
Sbjct: 1852 MGSSARDLVALTNEALSISITQKKSIIDTNTIRSALHRQTWDLRSQVRSVQDHGILFYQI 1911

Query: 61   GRAIAQNVLLSNCSIDPISIYMKKKSCNKGGSYLYKWYFELGTSMKKLTILLYLLSYSAG 120
            GRA+AQNVL+SNC IDPISIYMKKKSCN+G SYLYKWYFELGTSMKK TILLYLLS SAG
Sbjct: 1912 GRAVAQNVLISNCPIDPISIYMKKKSCNEGDSYLYKWYFELGTSMKKFTILLYLLSCSAG 1971

Query: 121  SVVQDLWSLSGPDEKNGITSYGLIENDSDLVHGLLEVEDALLGLGSSQTEKDCSRFD 178
            SV QDLWSL  PDEKN ITSYG +ENDSDLVHGLLEV+ AL  +GSS+TEKDCS+FD
Sbjct: 1972 SVAQDLWSLPVPDEKNRITSYGFVENDSDLVHGLLEVQGAL--VGSSRTEKDCSQFD 2026

[Close]

BLAST of CmaCh11G016980.1 vs. TAIR10
Match: ATCG01280.1 (ATCG01280.1 Chloroplast Ycf2;ATPase, AAA type, core)

HSP 1 Score: 297.0 bits (759), Expect = 1.2e-80
Identity = 150/177 (84.75%), Postives = 160/177 (90.40%), Query Frame = 1


Query: 1    MGSNVQDLVALTNETLSISIMQKKSIIDINIIRSALHRQTWDLRSQVRSVQDHGILFYQI 60
            MGS+ +DLVALTNE LSISI QKKSIID N IRSALHRQTWDLRSQVRSVQDHGILFYQI
Sbjct: 1852 MGSSARDLVALTNEALSISITQKKSIIDTNTIRSALHRQTWDLRSQVRSVQDHGILFYQI 1911

Query: 61   GRAIAQNVLLSNCSIDPISIYMKKKSCNKGGSYLYKWYFELGTSMKKLTILLYLLSYSAG 120
            GRA+AQNVL+SNC IDPISIYMKKKSCN+G SYLYKWYFELGTSMKK TILLYLLS SAG
Sbjct: 1912 GRAVAQNVLISNCPIDPISIYMKKKSCNEGDSYLYKWYFELGTSMKKFTILLYLLSCSAG 1971

Query: 121  SVVQDLWSLSGPDEKNGITSYGLIENDSDLVHGLLEVEDALLGLGSSQTEKDCSRFD 178
            SV QDLWSL  PDEKN ITSYG +ENDSDLVHGLLEV+ AL  +GSS+TEKDCS+FD
Sbjct: 1972 SVAQDLWSLPVPDEKNRITSYGFVENDSDLVHGLLEVQGAL--VGSSRTEKDCSQFD 2026

[Close]

BLAST of CmaCh11G016980.1 vs. NCBI nr
Match: gi|302025065|gb|ADK89907.1| (hypothetical chloroplast RF21 (chloroplast) [Crithmum maritimum])

HSP 1 Score: 372.1 bits (954), Expect = 8.4e-100
Identity = 209/319 (65.52%), Postives = 220/319 (68.97%), Query Frame = 1


Query: 1    MGSNVQDLVALTNETLSISIMQKKSIIDINIIRSALHRQTWDLRSQVRSVQDHGILFYQI 60
            MGSN +DLVALTNE LSISI QKKSIID N IRSA HRQTWDLRSQVRSVQDHGILFYQI
Sbjct: 1646 MGSNARDLVALTNEALSISITQKKSIIDTNTIRSAFHRQTWDLRSQVRSVQDHGILFYQI 1705

Query: 61   GRAIAQNVLLSNCSIDPISIYMKKKSCNKGGSYLYKWYFELGTSMKKLTILLYLLSYSAG 120
            GRA+AQNVLLSNC IDPISIY+KKKSCN+G SYLYKWYFELGTSMKKLTILLYLLS SAG
Sbjct: 1706 GRAVAQNVLLSNCPIDPISIYIKKKSCNEGDSYLYKWYFELGTSMKKLTILLYLLSCSAG 1765

Query: 121  SVVQDLWSLSGPDEKNGITSYGLIENDSDLVHG--------------------------- 180
            SV QDLWSL GPDEKNGITSYGL+ENDSDLVHG                           
Sbjct: 1766 SVAQDLWSLPGPDEKNGITSYGLVENDSDLVHGLLQVEGALVGSSRTEKDCSQFDNDRVT 1825

Query: 181  -LLEVE-----------------DALLGLGS---SQTEKDCSR---------------FD 240
             LL  E                    LG G+    Q E+D                  FD
Sbjct: 1826 LLLRPEPRNPLDMMQNGSCSILDQRFLGEGALDPQQIEEDLFNHIVWAPRIWHPWGILFD 1885

Query: 241  MIE-PNELGFPYWARSFRGKWVISHEE-----NDSEFLQSGTVQYQTRDRFSNEQDSFRI 251
             IE PNELGFPYW+RSFRGK ++  EE     NDSEFLQSGT+QYQTRDR S EQ  FRI
Sbjct: 1886 CIERPNELGFPYWSRSFRGKRILYDEEDELQENDSEFLQSGTMQYQTRDRSSKEQGFFRI 1945

[Close]

BLAST of CmaCh11G016980.1 vs. NCBI nr
Match: gi|302025154|gb|ADK89995.1| (hypothetical chloroplast RF21 (chloroplast) [Petroselinum crispum])

HSP 1 Score: 369.8 bits (948), Expect = 4.2e-99
Identity = 208/319 (65.20%), Postives = 219/319 (68.65%), Query Frame = 1


Query: 1    MGSNVQDLVALTNETLSISIMQKKSIIDINIIRSALHRQTWDLRSQVRSVQDHGILFYQI 60
            MGSN +DLVALTNE LSISI QKKSIID N IRSA HRQTWDLRSQVRSVQDHGILFYQI
Sbjct: 1635 MGSNARDLVALTNEALSISITQKKSIIDTNTIRSAFHRQTWDLRSQVRSVQDHGILFYQI 1694

Query: 61   GRAIAQNVLLSNCSIDPISIYMKKKSCNKGGSYLYKWYFELGTSMKKLTILLYLLSYSAG 120
            GRA+AQNVLLSNC IDPISIY+KKKSCN+G SYLYKWYFELGTSMKKLTILLYLLS SAG
Sbjct: 1695 GRAVAQNVLLSNCPIDPISIYIKKKSCNEGDSYLYKWYFELGTSMKKLTILLYLLSCSAG 1754

Query: 121  SVVQDLWSLSGPDEKNGITSYGLIENDSDLVHG--------------------------- 180
            SV QDLWSL GPDEKNGITSYGL+ENDSDLVHG                           
Sbjct: 1755 SVAQDLWSLPGPDEKNGITSYGLVENDSDLVHGLLQVEGALVGSSRTEKDCSQFDNDRVT 1814

Query: 181  -LLEVE-----------------DALLGLGS---SQTEKDCSR---------------FD 240
             LL  E                    LG G+    Q E+D                  FD
Sbjct: 1815 LLLRPEPRNPLDMMQNGSCSILDQRFLGEGALDPQQIEEDLFNHIVWAPRIWHPWGILFD 1874

Query: 241  MIE-PNELGFPYWARSFRGKWVISHEE-----NDSEFLQSGTVQYQTRDRFSNEQDSFRI 251
             IE PNELGFPYW+RSFRGK ++  EE     NDSEFLQSGT+QYQTRDR   EQ  FRI
Sbjct: 1875 CIERPNELGFPYWSRSFRGKRILYDEEDELQENDSEFLQSGTMQYQTRDRSYKEQGFFRI 1934

[Close]

BLAST of CmaCh11G016980.1 vs. NCBI nr
Match: gi|1002165801|ref|YP_009235923.1| (hypothetical chloroplast RF2 (chloroplast) [Foeniculum vulgare])

HSP 1 Score: 360.9 bits (925), Expect = 1.9e-96
Identity = 205/319 (64.26%), Postives = 217/319 (68.03%), Query Frame = 1


Query: 1    MGSNVQDLVALTNETLSISIMQKKSIIDINIIRSALHRQTWDLRSQVRSVQDHGILFYQI 60
            MGSN +DLVALTNE LSISI QKKSIID N IRSA HRQTWDLRSQVRSVQDHGILFYQI
Sbjct: 1673 MGSNARDLVALTNEALSISITQKKSIIDTNTIRSAFHRQTWDLRSQVRSVQDHGILFYQI 1732

Query: 61   GRAIAQNVLLSNCSIDPISIYMKKKSCNKGGSYLYKWYFELGTSMKKLTILLYLLSYSAG 120
            GRA+AQNVLLSNC IDPISIY+KKKSCN+G SYLYKWYFELGTSMKKLTILLYLLS SAG
Sbjct: 1733 GRAVAQNVLLSNCPIDPISIYIKKKSCNEGDSYLYKWYFELGTSMKKLTILLYLLSCSAG 1792

Query: 121  SVVQDLWSLSGPDEKNGITSYGLIEN----------------------------DSDLVH 180
            SV QDLWSL GPDEKNGITSYGL+EN                            D+D V 
Sbjct: 1793 SVAQDLWSLPGPDEKNGITSYGLVENDSDLVHGLLQVEGALVGSSRTEKDCSQFDNDRVT 1852

Query: 181  GLLEVE-----------------DALLGLGS---SQTEKDCSR---------------FD 240
             LL  E                    LG G+    Q E+D                  FD
Sbjct: 1853 LLLRPEPRNPLDMMQNGSCFILDQRFLGEGALDPQQIEEDLFNHIVWAPRIWHPWGILFD 1912

Query: 241  MIE-PNELGFPYWARSFRGKWVISHEE-----NDSEFLQSGTVQYQTRDRFSNEQDSFRI 251
             IE PNELGFPYW+RSFRGK ++  EE     NDSEFLQSGT+QYQTRDR S EQ  FRI
Sbjct: 1913 CIERPNELGFPYWSRSFRGKRILYDEEDELQENDSEFLQSGTMQYQTRDRSSKEQGFFRI 1972

[Close]

BLAST of CmaCh11G016980.1 vs. NCBI nr
Match: gi|1002165887|ref|YP_009236008.1| (hypothetical chloroplast RF2 (chloroplast) [Anethum graveolens])

HSP 1 Score: 360.9 bits (925), Expect = 1.9e-96
Identity = 205/319 (64.26%), Postives = 217/319 (68.03%), Query Frame = 1


Query: 1    MGSNVQDLVALTNETLSISIMQKKSIIDINIIRSALHRQTWDLRSQVRSVQDHGILFYQI 60
            MGSN +DLVALTNE LSISI QKKSIID N IRSA HRQTWDLRSQVRSVQDHGILFYQI
Sbjct: 1646 MGSNARDLVALTNEALSISITQKKSIIDTNTIRSAFHRQTWDLRSQVRSVQDHGILFYQI 1705

Query: 61   GRAIAQNVLLSNCSIDPISIYMKKKSCNKGGSYLYKWYFELGTSMKKLTILLYLLSYSAG 120
            GRA+AQNVLLSNC IDPISIY+KKKSCN+G SYLYKWYFELGTSMKKLTILLYLLS SAG
Sbjct: 1706 GRAVAQNVLLSNCPIDPISIYIKKKSCNEGDSYLYKWYFELGTSMKKLTILLYLLSCSAG 1765

Query: 121  SVVQDLWSLSGPDEKNGITSYGLIEN----------------------------DSDLVH 180
            SV QDLWSL GPDEKNGITSYGL+EN                            D+D V 
Sbjct: 1766 SVAQDLWSLPGPDEKNGITSYGLVENDSDLVHGLLQVEGALVGSSRTEKDCSQFDNDRVT 1825

Query: 181  GLLEVE-----------------DALLGLGS---SQTEKDCSR---------------FD 240
             LL  E                    LG G+    Q E+D                  FD
Sbjct: 1826 LLLRPEPRNPLDMMQNGSCFILDQRFLGEGALDPQQIEEDLFNHIVWAPRIWHPWGILFD 1885

Query: 241  MIE-PNELGFPYWARSFRGKWVISHEE-----NDSEFLQSGTVQYQTRDRFSNEQDSFRI 251
             IE PNELGFPYW+RSFRGK ++  EE     NDSEFLQSGT+QYQTRDR S EQ  FRI
Sbjct: 1886 CIERPNELGFPYWSRSFRGKRILYDEEDELQENDSEFLQSGTMQYQTRDRSSKEQGFFRI 1945

[Close]

BLAST of CmaCh11G016980.1 vs. NCBI nr
Match: gi|1002162714|ref|YP_009232788.1| (Ycf2 (chloroplast) [Angelica acutiloba])

HSP 1 Score: 357.8 bits (917), Expect = 1.6e-95
Identity = 203/322 (63.04%), Postives = 217/322 (67.39%), Query Frame = 1


Query: 1    MGSNVQDLVALTNETLSISIMQKKSIIDINIIRSALHRQTWDLRSQVRSVQDHGILFYQI 60
            MGSN +DLVALTNE LSISI QKKSIID N IRSA HRQTWDLRSQVRSVQDHGILFYQI
Sbjct: 1651 MGSNARDLVALTNEVLSISITQKKSIIDTNTIRSAFHRQTWDLRSQVRSVQDHGILFYQI 1710

Query: 61   GRAIAQNVLLSNCSIDPISIYMKKKSCNKGGSYLYKWYFELGTSMKKLTILLYLLSYSAG 120
            GRA+AQNVLLSNC IDPISIY+KKKSCN+G SYLYKWYFELGTSMKKLTILLYLLS SAG
Sbjct: 1711 GRAVAQNVLLSNCPIDPISIYIKKKSCNEGDSYLYKWYFELGTSMKKLTILLYLLSCSAG 1770

Query: 121  SVVQDLWSLSGPDEKNGITSYGLIEN----------------------------DSDLVH 180
            SV QDLWSL GPDEKNGITSYGL+EN                            D+D V 
Sbjct: 1771 SVAQDLWSLPGPDEKNGITSYGLVENDSDLVHGLLQVEGALVGSSRTEKDCNQFDNDRVT 1830

Query: 181  GLLEVE-----------------DALLGLGS---SQTEKDCSR---------------FD 240
             LL  E                    +G G+    Q E+D                  FD
Sbjct: 1831 LLLRPEPRNPLDMMQNGSCSILDQRFIGEGALDPQQIEEDLFNYIVWAPRIWHPWGILFD 1890

Query: 241  MIE-PNELGFPYWARSFRGKWVISH--------EENDSEFLQSGTVQYQTRDRFSNEQDS 251
             IE PNELGFPYW+RSFRGK ++          +ENDSEFLQSGT+QYQTRDR S EQ  
Sbjct: 1891 CIERPNELGFPYWSRSFRGKRILYDLYDEEDELQENDSEFLQSGTMQYQTRDRSSKEQGF 1950

The following BLAST results are available for this feature:

BLAST of CmaCh11G016980.1 vs. Swiss-Prot


Match Name	E-value	Identity	Description
YCF2_DAUCA	7.6e-93	60.67	Protein Ycf2 OS=Daucus carota GN=ycf2-A PE=3 SV=1	[more]
YCF2_SPIOL	2.1e-90	60.55	Protein Ycf2 OS=Spinacia oleracea GN=ycf2-A PE=3 SV=2	[more]
YCF2_TOBAC	1.1e-83	88.70	Protein Ycf2 OS=Nicotiana tabacum GN=ycf2-A PE=3 SV=2	[more]
YCF2_NICSY	1.1e-83	88.70	Protein Ycf2 OS=Nicotiana sylvestris GN=ycf2-A PE=3 SV=1	[more]
YCF2_NICTO	1.1e-83	88.70	Protein Ycf2 OS=Nicotiana tomentosiformis GN=ycf2-A PE=3 SV=1	[more]

BLAST of CmaCh11G016980.1 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0C4FG85_9APIA	5.9e-100	65.52	Protein Ycf2 OS=Crithmum maritimum GN=ycf2 PE=3 SV=1	[more]
A0A0C4FFD5_PETCR	2.9e-99	65.20	Protein Ycf2 OS=Petroselinum crispum GN=ycf2 PE=3 SV=1	[more]
A0A125S165_FOEVU	1.4e-96	64.26	Protein Ycf2 OS=Foeniculum vulgare GN=ycf2 PE=3 SV=1	[more]
A9QAT2_ANEGR	1.4e-96	64.26	Hypothetical chloroplast RF2 (Fragment) OS=Anethum graveolens GN=ycf2 PE=3 SV=1	[more]
A0A0H3UNM7_SESMO	1.1e-95	63.64	Protein Ycf2 OS=Seseli montanum GN=ycf2 PE=3 SV=1	[more]

BLAST of CmaCh11G016980.1 vs. TAIR10


Match Name	E-value	Identity	Description
ATCG00860.1	1.2e-80	84.75	ATCG00860.1 Chloroplast Ycf2;ATPase, AAA type, core	[more]
ATCG01280.1	1.2e-80	84.75	ATCG01280.1 Chloroplast Ycf2;ATPase, AAA type, core	[more]

BLAST of CmaCh11G016980.1 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|302025065\|gb\|ADK89907.1\|	8.4e-100	65.52	hypothetical chloroplast RF21 (chloroplast) [Crithmum maritimum]	[more]
gi\|302025154\|gb\|ADK89995.1\|	4.2e-99	65.20	hypothetical chloroplast RF21 (chloroplast) [Petroselinum crispum]	[more]
gi\|1002165801\|ref\|YP_009235923.1\|	1.9e-96	64.26	hypothetical chloroplast RF2 (chloroplast) [Foeniculum vulgare]	[more]
gi\|1002165887\|ref\|YP_009236008.1\|	1.9e-96	64.26	hypothetical chloroplast RF2 (chloroplast) [Anethum graveolens]	[more]
gi\|1002162714\|ref\|YP_009232788.1\|	1.6e-95	63.04	Ycf2 (chloroplast) [Angelica acutiloba]	[more]

Annotated Terms

The following terms have been associated with this mRNA:

Vocabulary: **INTERPRO**
Term	Definition

GO Annotation

GO Assignments

This mRNA is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0009570	chloroplast stroma
cellular_component	GO:0005739	mitochondrion
molecular_function	GO:0005524	ATP binding

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
CmaCh11G016980	CmaCh11G016980	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
CmaCh11G016980.1	CmaCh11G016980.1-protein	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
CmaCh11G016980.1.CDS.2	CmaCh11G016980.1.CDS.2	CDS
CmaCh11G016980.1.CDS.1	CmaCh11G016980.1.CDS.1	CDS

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
CmaCh11G016980.1.exon.2	CmaCh11G016980.1.exon.2	exon
CmaCh11G016980.1.exon.1	CmaCh11G016980.1.exon.1	exon

InterPro

Analysis Name: InterPro Annotations of Cucurbita maxima
Date Performed: 2017-05-20


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR33078	FAMILY NOT NAMED	coord: 1..250 score: 1.9E