CmaCh11G010560.1 (mRNA) Cucurbita maxima (Rimu)
The following sequences are available for this feature:
Legend: CDSexon Hold the cursor over a type above to highlight its positions in the sequence below.ATGCAAAAAGCTTCCGGGGTAAATGCTCATACTAATTTTAAAAAGAACTCATAATTTGAGTTAGTTTTAACACGGTAGTGTTTTTTTGTTTGTTTATTTAAAATGAGCCGAATTTGAAGTTCAATTTCATCACATATTCAATAGTGAAGGACATAACTTTATTGGATAGCAAGAATTTTCATATCAATGTTTTGGGCTGCAAGAATCTTACCTTCGATCACCTGACAATTACTGCACCAGACCATAGTCCCAACACCGATGGAATTCACTTGGGTAATTCAGAAGAAATTAGCATTATCAATACCGTAATCGTAACGGGAAATGATTGTATATCTGTAGGATATAGTAACAAAGAAATAACTATCAGTGATGTTACTTGCGGACCGGGACATGACATTAACATAGGCAAGTGGTAG ATGCAAAAAGCTTCCGGGCCGAATTTGAAGTTCAATTTCATCACATATTCAATAGTGAAGGACATAACTTTATTGGATAGCAAGAATTTTCATATCAATGTTTTGGGCTGCAAGAATCTTACCTTCGATCACCTGACAATTACTGCACCAGACCATAGTCCCAACACCGATGGAATTCACTTGGGTAATTCAGAAGAAATTAGCATTATCAATACCGTAATCGTAACGGGAAATGATTGTATATCTGTAGGATATAGTAACAAAGAAATAACTATCAGTGATGTTACTTGCGGACCGGGACATGACATTAACATAGGCAAGTGGTAG ATGCAAAAAGCTTCCGGGCCGAATTTGAAGTTCAATTTCATCACATATTCAATAGTGAAGGACATAACTTTATTGGATAGCAAGAATTTTCATATCAATGTTTTGGGCTGCAAGAATCTTACCTTCGATCACCTGACAATTACTGCACCAGACCATAGTCCCAACACCGATGGAATTCACTTGGGTAATTCAGAAGAAATTAGCATTATCAATACCGTAATCGTAACGGGAAATGATTGTATATCTGTAGGATATAGTAACAAAGAAATAACTATCAGTGATGTTACTTGCGGACCGGGACATGACATTAACATAGGCAAGTGGTAG MQKASGPNLKFNFITYSIVKDITLLDSKNFHINVLGCKNLTFDHLTITAPDHSPNTDGIHLGNSEEISIINTVIVTGNDCISVGYSNKEITISDVTCGPGHDINIGKW
BLAST of CmaCh11G010560.1 vs. Swiss-Prot
Match: PGLR_MEDSA (Polygalacturonase OS=Medicago sativa PE=2 SV=1) HSP 1 Score: 132.5 bits (332), Expect = 2.8e-30 Identity = 57/99 (57.58%), Postives = 75/99 (75.76%), Query Frame = 1
BLAST of CmaCh11G010560.1 vs. Swiss-Prot
Match: PGLR_OENOR (Exopolygalacturonase (Fragment) OS=Oenothera organensis PE=2 SV=1) HSP 1 Score: 130.2 bits (326), Expect = 1.4e-29 Identity = 58/104 (55.77%), Postives = 80/104 (76.92%), Query Frame = 1
BLAST of CmaCh11G010560.1 vs. Swiss-Prot
Match: PGLR_GOSBA (Polygalacturonase OS=Gossypium barbadense GN=G9 PE=2 SV=1) HSP 1 Score: 127.9 bits (320), Expect = 6.8e-29 Identity = 56/99 (56.57%), Postives = 76/99 (76.77%), Query Frame = 1
BLAST of CmaCh11G010560.1 vs. Swiss-Prot
Match: PGLR2_PLAAC (Exopolygalacturonase (Fragment) OS=Platanus acerifolia GN=plaa2 PE=1 SV=1) HSP 1 Score: 127.9 bits (320), Expect = 6.8e-29 Identity = 57/104 (54.81%), Postives = 82/104 (78.85%), Query Frame = 1
BLAST of CmaCh11G010560.1 vs. Swiss-Prot
Match: PGLR_GOSHI (Polygalacturonase OS=Gossypium hirsutum GN=G9 PE=2 SV=1) HSP 1 Score: 127.5 bits (319), Expect = 8.9e-29 Identity = 56/99 (56.57%), Postives = 76/99 (76.77%), Query Frame = 1
BLAST of CmaCh11G010560.1 vs. TrEMBL
Match: E3VSV7_CUCPE (Polygalacturonase OS=Cucurbita pepo GN=PG1 PE=2 SV=1) HSP 1 Score: 166.4 bits (420), Expect = 1.9e-38 Identity = 79/99 (79.80%), Postives = 89/99 (89.90%), Query Frame = 1
BLAST of CmaCh11G010560.1 vs. TrEMBL
Match: A0A0A0LX75_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_1G066500 PE=3 SV=1) HSP 1 Score: 161.4 bits (407), Expect = 6.2e-37 Identity = 75/98 (76.53%), Postives = 89/98 (90.82%), Query Frame = 1
BLAST of CmaCh11G010560.1 vs. TrEMBL
Match: A0A0A0KPH7_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_5G266870 PE=3 SV=1) HSP 1 Score: 160.6 bits (405), Expect = 1.1e-36 Identity = 73/98 (74.49%), Postives = 89/98 (90.82%), Query Frame = 1
BLAST of CmaCh11G010560.1 vs. TrEMBL
Match: A0A0A0KF15_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_6G434410 PE=3 SV=1) HSP 1 Score: 159.5 bits (402), Expect = 2.4e-36 Identity = 75/99 (75.76%), Postives = 87/99 (87.88%), Query Frame = 1
BLAST of CmaCh11G010560.1 vs. TrEMBL
Match: A0A0A0K6J6_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_7G037450 PE=3 SV=1) HSP 1 Score: 155.6 bits (392), Expect = 3.4e-35 Identity = 69/99 (69.70%), Postives = 91/99 (91.92%), Query Frame = 1
BLAST of CmaCh11G010560.1 vs. TAIR10
Match: AT3G07840.1 (AT3G07840.1 Pectin lyase-like superfamily protein) HSP 1 Score: 124.4 bits (311), Expect = 4.3e-29 Identity = 53/99 (53.54%), Postives = 77/99 (77.78%), Query Frame = 1
BLAST of CmaCh11G010560.1 vs. TAIR10
Match: AT3G07820.1 (AT3G07820.1 Pectin lyase-like superfamily protein) HSP 1 Score: 124.0 bits (310), Expect = 5.6e-29 Identity = 54/99 (54.55%), Postives = 77/99 (77.78%), Query Frame = 1
BLAST of CmaCh11G010560.1 vs. TAIR10
Match: AT3G07830.1 (AT3G07830.1 Pectin lyase-like superfamily protein) HSP 1 Score: 122.5 bits (306), Expect = 1.6e-28 Identity = 53/99 (53.54%), Postives = 77/99 (77.78%), Query Frame = 1
BLAST of CmaCh11G010560.1 vs. TAIR10
Match: AT5G48140.1 (AT5G48140.1 Pectin lyase-like superfamily protein) HSP 1 Score: 120.9 bits (302), Expect = 4.7e-28 Identity = 54/99 (54.55%), Postives = 76/99 (76.77%), Query Frame = 1
BLAST of CmaCh11G010560.1 vs. TAIR10
Match: AT3G07850.1 (AT3G07850.1 Pectin lyase-like superfamily protein) HSP 1 Score: 103.2 bits (256), Expect = 1.0e-22 Identity = 45/99 (45.45%), Postives = 66/99 (66.67%), Query Frame = 1
BLAST of CmaCh11G010560.1 vs. NCBI nr
Match: gi|310753534|gb|ADP09681.1| (polygalacturonase [Cucurbita pepo]) HSP 1 Score: 166.4 bits (420), Expect = 2.8e-38 Identity = 79/99 (79.80%), Postives = 89/99 (89.90%), Query Frame = 1
BLAST of CmaCh11G010560.1 vs. NCBI nr
Match: gi|659097567|ref|XP_008449696.1| (PREDICTED: LOW QUALITY PROTEIN: exopolygalacturonase-like [Cucumis melo]) HSP 1 Score: 164.9 bits (416), Expect = 8.1e-38 Identity = 76/99 (76.77%), Postives = 89/99 (89.90%), Query Frame = 1
BLAST of CmaCh11G010560.1 vs. NCBI nr
Match: gi|659097569|ref|XP_008449697.1| (PREDICTED: exopolygalacturonase-like [Cucumis melo]) HSP 1 Score: 164.5 bits (415), Expect = 1.1e-37 Identity = 76/99 (76.77%), Postives = 89/99 (89.90%), Query Frame = 1
BLAST of CmaCh11G010560.1 vs. NCBI nr
Match: gi|659067859|ref|XP_008441641.1| (PREDICTED: exopolygalacturonase-like [Cucumis melo]) HSP 1 Score: 162.9 bits (411), Expect = 3.1e-37 Identity = 77/99 (77.78%), Postives = 88/99 (88.89%), Query Frame = 1
BLAST of CmaCh11G010560.1 vs. NCBI nr
Match: gi|659134134|ref|XP_008467043.1| (PREDICTED: exopolygalacturonase-like, partial [Cucumis melo]) HSP 1 Score: 161.8 bits (408), Expect = 6.8e-37 Identity = 74/99 (74.75%), Postives = 89/99 (89.90%), Query Frame = 1
The following BLAST results are available for this feature:
The following terms have been associated with this mRNA:
GO Assignments
This mRNA is annotated with the following GO terms.
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following exon feature(s) are a part of this mRNA:
Analysis Name: InterPro Annotations of Cucurbita maxima
Date Performed: 2017-05-20
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