CmaCh11G010560.1 (mRNA) Cucurbita maxima (Rimu)

NameCmaCh11G010560.1
TypemRNA
OrganismCucurbita maxima (Cucurbita maxima (Rimu))
DescriptionPolygalacturonase
LocationCma_Chr11 : 5799620 .. 5800035 (-)
Sequence length327
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSexon
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGCAAAAAGCTTCCGGGGTAAATGCTCATACTAATTTTAAAAAGAACTCATAATTTGAGTTAGTTTTAACACGGTAGTGTTTTTTTGTTTGTTTATTTAAAATGAGCCGAATTTGAAGTTCAATTTCATCACATATTCAATAGTGAAGGACATAACTTTATTGGATAGCAAGAATTTTCATATCAATGTTTTGGGCTGCAAGAATCTTACCTTCGATCACCTGACAATTACTGCACCAGACCATAGTCCCAACACCGATGGAATTCACTTGGGTAATTCAGAAGAAATTAGCATTATCAATACCGTAATCGTAACGGGAAATGATTGTATATCTGTAGGATATAGTAACAAAGAAATAACTATCAGTGATGTTACTTGCGGACCGGGACATGACATTAACATAGGCAAGTGGTAG

mRNA sequence

ATGCAAAAAGCTTCCGGGCCGAATTTGAAGTTCAATTTCATCACATATTCAATAGTGAAGGACATAACTTTATTGGATAGCAAGAATTTTCATATCAATGTTTTGGGCTGCAAGAATCTTACCTTCGATCACCTGACAATTACTGCACCAGACCATAGTCCCAACACCGATGGAATTCACTTGGGTAATTCAGAAGAAATTAGCATTATCAATACCGTAATCGTAACGGGAAATGATTGTATATCTGTAGGATATAGTAACAAAGAAATAACTATCAGTGATGTTACTTGCGGACCGGGACATGACATTAACATAGGCAAGTGGTAG

Coding sequence (CDS)

ATGCAAAAAGCTTCCGGGCCGAATTTGAAGTTCAATTTCATCACATATTCAATAGTGAAGGACATAACTTTATTGGATAGCAAGAATTTTCATATCAATGTTTTGGGCTGCAAGAATCTTACCTTCGATCACCTGACAATTACTGCACCAGACCATAGTCCCAACACCGATGGAATTCACTTGGGTAATTCAGAAGAAATTAGCATTATCAATACCGTAATCGTAACGGGAAATGATTGTATATCTGTAGGATATAGTAACAAAGAAATAACTATCAGTGATGTTACTTGCGGACCGGGACATGACATTAACATAGGCAAGTGGTAG

Protein sequence

MQKASGPNLKFNFITYSIVKDITLLDSKNFHINVLGCKNLTFDHLTITAPDHSPNTDGIHLGNSEEISIINTVIVTGNDCISVGYSNKEITISDVTCGPGHDINIGKW
BLAST of CmaCh11G010560.1 vs. Swiss-Prot
Match: PGLR_MEDSA (Polygalacturonase OS=Medicago sativa PE=2 SV=1)

HSP 1 Score: 132.5 bits (332), Expect = 2.8e-30
Identity = 57/99 (57.58%), Postives = 75/99 (75.76%), Query Frame = 1

Query: 8   NLKFNFITYSIVKDITLLDSKNFHINVLGCKNLTFDHLTITAPDHSPNTDGIHLGNSEEI 67
           N  FNF+  SIV+ +T  DSKNFH+ V GCKN+TFD  TITAP  SPNTDGIH+G S ++
Sbjct: 149 NFGFNFVNNSIVRGVTSKDSKNFHVMVFGCKNITFDGFTITAPGDSPNTDGIHMGKSTDV 208

Query: 68  SIINTVIVTGNDCISVGYSNKEITISDVTCGPGHDINIG 107
            I+NT I TG+DC+S+G  +K+IT+  V CGPGH +++G
Sbjct: 209 KILNTNIGTGDDCVSIGDGSKQITVQGVNCGPGHGLSVG 247

BLAST of CmaCh11G010560.1 vs. Swiss-Prot
Match: PGLR_OENOR (Exopolygalacturonase (Fragment) OS=Oenothera organensis PE=2 SV=1)

HSP 1 Score: 130.2 bits (326), Expect = 1.4e-29
Identity = 58/104 (55.77%), Postives = 80/104 (76.92%), Query Frame = 1

Query: 3   KASGPNLKFNFITYSIVKDITLLDSKNFHINVLGCKNLTFDHLTITAPDHSPNTDGIHLG 62
           K    NL+   +T SI++D+T LDSKNFH+NV+GCKNLTF+   I+A + S NTDGIH+G
Sbjct: 104 KTLSMNLRLYAVTNSILRDVTTLDSKNFHVNVIGCKNLTFERFKISAAETSINTDGIHIG 163

Query: 63  NSEEISIINTVIVTGNDCISVGYSNKEITISDVTCGPGHDINIG 107
            S+ ++IINT I TG+DCIS+G  +K I I+++TCGPGH I++G
Sbjct: 164 RSDGVNIINTEIKTGDDCISLGDGSKNINITNITCGPGHGISVG 207

BLAST of CmaCh11G010560.1 vs. Swiss-Prot
Match: PGLR_GOSBA (Polygalacturonase OS=Gossypium barbadense GN=G9 PE=2 SV=1)

HSP 1 Score: 127.9 bits (320), Expect = 6.8e-29
Identity = 56/99 (56.57%), Postives = 76/99 (76.77%), Query Frame = 1

Query: 8   NLKFNFITYSIVKDITLLDSKNFHINVLGCKNLTFDHLTITAPDHSPNTDGIHLGNSEEI 67
           N++F+F+T ++++DIT  DSK FHINV  CKN+T + L I APD SPNTDGIH+G SE +
Sbjct: 151 NIRFDFVTNALIQDITSKDSKLFHINVFACKNITLERLKIEAPDESPNTDGIHMGKSEGV 210

Query: 68  SIINTVIVTGNDCISVGYSNKEITISDVTCGPGHDINIG 107
           +II + I TG+DCIS+G   K + I ++TCGPGH I+IG
Sbjct: 211 NIIASDIKTGDDCISIGDGTKNMVIKEITCGPGHGISIG 249

BLAST of CmaCh11G010560.1 vs. Swiss-Prot
Match: PGLR2_PLAAC (Exopolygalacturonase (Fragment) OS=Platanus acerifolia GN=plaa2 PE=1 SV=1)

HSP 1 Score: 127.9 bits (320), Expect = 6.8e-29
Identity = 57/104 (54.81%), Postives = 82/104 (78.85%), Query Frame = 1

Query: 3   KASGPNLKFNFITYSIVKDITLLDSKNFHINVLGCKNLTFDHLTITAPDHSPNTDGIHLG 62
           K +  NL+F+F+ +++V+DIT L+SK FHINVL C+++TF H+T+TAP  S NTDGIH+G
Sbjct: 125 KHAAMNLRFDFLKHAMVRDITSLNSKMFHINVLECEDITFQHVTVTAPGTSINTDGIHVG 184

Query: 63  NSEEISIINTVIVTGNDCISVGYSNKEITISDVTCGPGHDINIG 107
            S+ ++I NT I TG+DCIS+G  ++ +TI+ V CGPGH I+IG
Sbjct: 185 ISKGVTITNTKIATGDDCISIGPGSQNVTITQVNCGPGHGISIG 228

BLAST of CmaCh11G010560.1 vs. Swiss-Prot
Match: PGLR_GOSHI (Polygalacturonase OS=Gossypium hirsutum GN=G9 PE=2 SV=1)

HSP 1 Score: 127.5 bits (319), Expect = 8.9e-29
Identity = 56/99 (56.57%), Postives = 76/99 (76.77%), Query Frame = 1

Query: 8   NLKFNFITYSIVKDITLLDSKNFHINVLGCKNLTFDHLTITAPDHSPNTDGIHLGNSEEI 67
           N++F+F+T ++++DIT  DSK FHINV  CKN+T + L I APD SPNTDGIH+G SE +
Sbjct: 151 NIRFDFLTNALIQDITSKDSKLFHINVFACKNITLERLKIEAPDESPNTDGIHMGKSEGV 210

Query: 68  SIINTVIVTGNDCISVGYSNKEITISDVTCGPGHDINIG 107
           +II + I TG+DCIS+G   K + I ++TCGPGH I+IG
Sbjct: 211 NIIASDIKTGDDCISIGDGTKNMVIKEITCGPGHGISIG 249

BLAST of CmaCh11G010560.1 vs. TrEMBL
Match: E3VSV7_CUCPE (Polygalacturonase OS=Cucurbita pepo GN=PG1 PE=2 SV=1)

HSP 1 Score: 166.4 bits (420), Expect = 1.9e-38
Identity = 79/99 (79.80%), Postives = 89/99 (89.90%), Query Frame = 1

Query: 8   NLKFNFITYSIVKDITLLDSKNFHINVLGCKNLTFDHLTITAPDHSPNTDGIHLGNSEEI 67
           NLKFNFIT SIVKDIT LDSKNFHINVL  KNLTFDHL ITAP +SPNTDGIHLG+SE++
Sbjct: 157 NLKFNFITNSIVKDITSLDSKNFHINVLAGKNLTFDHLKITAPHNSPNTDGIHLGDSEDV 216

Query: 68  SIINTVIVTGNDCISVGYSNKEITISDVTCGPGHDINIG 107
            I+NT I TG+DCISVGY+N++ITISDVTCGPGH I+IG
Sbjct: 217 YILNTAIATGDDCISVGYTNRKITISDVTCGPGHGISIG 255

BLAST of CmaCh11G010560.1 vs. TrEMBL
Match: A0A0A0LX75_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_1G066500 PE=3 SV=1)

HSP 1 Score: 161.4 bits (407), Expect = 6.2e-37
Identity = 75/98 (76.53%), Postives = 89/98 (90.82%), Query Frame = 1

Query: 9   LKFNFITYSIVKDITLLDSKNFHINVLGCKNLTFDHLTITAPDHSPNTDGIHLGNSEEIS 68
           LK NFIT SIVKDIT LDSKN+HIN+LGCKNLTFDH+TITAP++SPNTDGIH+ +SE+I+
Sbjct: 51  LKLNFITNSIVKDITSLDSKNYHINLLGCKNLTFDHVTITAPENSPNTDGIHVSSSEQIN 110

Query: 69  IINTVIVTGNDCISVGYSNKEITISDVTCGPGHDINIG 107
           I+NT I TG+DCISVG +NK+I ISDVTCGPGH I+IG
Sbjct: 111 ILNTNIATGDDCISVGDTNKQIVISDVTCGPGHGISIG 148

BLAST of CmaCh11G010560.1 vs. TrEMBL
Match: A0A0A0KPH7_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_5G266870 PE=3 SV=1)

HSP 1 Score: 160.6 bits (405), Expect = 1.1e-36
Identity = 73/98 (74.49%), Postives = 89/98 (90.82%), Query Frame = 1

Query: 9   LKFNFITYSIVKDITLLDSKNFHINVLGCKNLTFDHLTITAPDHSPNTDGIHLGNSEEIS 68
           LKFNF+T SIVKDIT LDSKNFHIN+LGCKN+TF+H+TI+AP++SPNTDGIH+ +SE+I 
Sbjct: 44  LKFNFVTNSIVKDITSLDSKNFHINLLGCKNITFEHVTISAPENSPNTDGIHISSSEQIR 103

Query: 69  IINTVIVTGNDCISVGYSNKEITISDVTCGPGHDINIG 107
           I+NT I TG+DC+SVG SNK+ITI DVTCGPGH I+IG
Sbjct: 104 ILNTKISTGDDCVSVGDSNKDITIRDVTCGPGHGISIG 141

BLAST of CmaCh11G010560.1 vs. TrEMBL
Match: A0A0A0KF15_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_6G434410 PE=3 SV=1)

HSP 1 Score: 159.5 bits (402), Expect = 2.4e-36
Identity = 75/99 (75.76%), Postives = 87/99 (87.88%), Query Frame = 1

Query: 8   NLKFNFITYSIVKDITLLDSKNFHINVLGCKNLTFDHLTITAPDHSPNTDGIHLGNSEEI 67
           NLK NFIT SIV  IT LDSKNFHIN+LGCKNLTFDH+TITAP +SPNTDGIH+ +SE+I
Sbjct: 61  NLKLNFITNSIVTGITSLDSKNFHINLLGCKNLTFDHVTITAPGNSPNTDGIHVSSSEQI 120

Query: 68  SIINTVIVTGNDCISVGYSNKEITISDVTCGPGHDINIG 107
           +I+NT I TG+DCISVG SNK++ ISDVTCGPGH I+IG
Sbjct: 121 NILNTNIATGDDCISVGDSNKQVAISDVTCGPGHGISIG 159

BLAST of CmaCh11G010560.1 vs. TrEMBL
Match: A0A0A0K6J6_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_7G037450 PE=3 SV=1)

HSP 1 Score: 155.6 bits (392), Expect = 3.4e-35
Identity = 69/99 (69.70%), Postives = 91/99 (91.92%), Query Frame = 1

Query: 8   NLKFNFITYSIVKDITLLDSKNFHINVLGCKNLTFDHLTITAPDHSPNTDGIHLGNSEEI 67
           NLKF+FIT SIVKDIT LDSKNFHIN+LGCKN+TF H+TI+AP++SPNTDGIH+ +SE+I
Sbjct: 74  NLKFSFITNSIVKDITSLDSKNFHINLLGCKNVTFQHVTISAPENSPNTDGIHISSSEQI 133

Query: 68  SIINTVIVTGNDCISVGYSNKEITISDVTCGPGHDINIG 107
           +I+++ I TG+DC+SVG SNK++TI++VTCGPGH I++G
Sbjct: 134 NILDSKISTGDDCVSVGDSNKQVTITNVTCGPGHGISVG 172

BLAST of CmaCh11G010560.1 vs. TAIR10
Match: AT3G07840.1 (AT3G07840.1 Pectin lyase-like superfamily protein)

HSP 1 Score: 124.4 bits (311), Expect = 4.3e-29
Identity = 53/99 (53.54%), Postives = 77/99 (77.78%), Query Frame = 1

Query: 8   NLKFNFITYSIVKDITLLDSKNFHINVLGCKNLTFDHLTITAPDHSPNTDGIHLGNSEEI 67
           +++F+F+  + ++DI+ +D+KNFHINVLG KN+TFD++ + AP  SPNTDGIHLG SE +
Sbjct: 141 SIRFDFVENAEIRDISSIDAKNFHINVLGAKNMTFDNVKVIAPAESPNTDGIHLGRSEGV 200

Query: 68  SIINTVIVTGNDCISVGYSNKEITISDVTCGPGHDINIG 107
            I+N+ I TG+DCISVG   K + + +V CGPGH I++G
Sbjct: 201 KILNSKIATGDDCISVGDGMKNLHVENVMCGPGHGISVG 239

BLAST of CmaCh11G010560.1 vs. TAIR10
Match: AT3G07820.1 (AT3G07820.1 Pectin lyase-like superfamily protein)

HSP 1 Score: 124.0 bits (310), Expect = 5.6e-29
Identity = 54/99 (54.55%), Postives = 77/99 (77.78%), Query Frame = 1

Query: 8   NLKFNFITYSIVKDITLLDSKNFHINVLGCKNLTFDHLTITAPDHSPNTDGIHLGNSEEI 67
           +++F+FI  S ++DI+ +D+KNFHINVLG KN+T +++ I AP+ SPNTDGIHLG S+ +
Sbjct: 140 SIRFDFILNSEIRDISSIDAKNFHINVLGAKNMTMNNIKIVAPEDSPNTDGIHLGRSDGV 199

Query: 68  SIINTVIVTGNDCISVGYSNKEITISDVTCGPGHDINIG 107
            I+N+ I TG+DCISVG   K + +  VTCGPGH I++G
Sbjct: 200 KILNSFISTGDDCISVGDGMKNLHVEKVTCGPGHGISVG 238

BLAST of CmaCh11G010560.1 vs. TAIR10
Match: AT3G07830.1 (AT3G07830.1 Pectin lyase-like superfamily protein)

HSP 1 Score: 122.5 bits (306), Expect = 1.6e-28
Identity = 53/99 (53.54%), Postives = 77/99 (77.78%), Query Frame = 1

Query: 8   NLKFNFITYSIVKDITLLDSKNFHINVLGCKNLTFDHLTITAPDHSPNTDGIHLGNSEEI 67
           +++F+F+T + ++DI+ +D+KNFHINV+G KN+TFD++ I AP  SPNTDGIHLG S  +
Sbjct: 141 SIRFDFVTNAEIRDISSIDAKNFHINVIGAKNMTFDNVKIMAPAESPNTDGIHLGRSVGV 200

Query: 68  SIINTVIVTGNDCISVGYSNKEITISDVTCGPGHDINIG 107
           SIIN+ I TG+DC+SVG     + + +V CGPGH I++G
Sbjct: 201 SIINSRISTGDDCVSVGDGMVNLLVKNVVCGPGHGISVG 239

BLAST of CmaCh11G010560.1 vs. TAIR10
Match: AT5G48140.1 (AT5G48140.1 Pectin lyase-like superfamily protein)

HSP 1 Score: 120.9 bits (302), Expect = 4.7e-28
Identity = 54/99 (54.55%), Postives = 76/99 (76.77%), Query Frame = 1

Query: 8   NLKFNFITYSIVKDITLLDSKNFHINVLGCKNLTFDHLTITAPDHSPNTDGIHLGNSEEI 67
           +++F+F+T + ++ IT LD+K+FHINV+G KN+TF+ + I AP  SPNTDGIH+G S+ I
Sbjct: 140 SIRFDFVTDAKIRGITSLDAKHFHINVIGAKNVTFEDVKIIAPAESPNTDGIHVGRSDGI 199

Query: 68  SIINTVIVTGNDCISVGYSNKEITISDVTCGPGHDINIG 107
            IIN+ I TG+DC+SVG   K + +  VTCGPGH I+IG
Sbjct: 200 KIINSFISTGDDCVSVGDGMKNLLVERVTCGPGHGISIG 238

BLAST of CmaCh11G010560.1 vs. TAIR10
Match: AT3G07850.1 (AT3G07850.1 Pectin lyase-like superfamily protein)

HSP 1 Score: 103.2 bits (256), Expect = 1.0e-22
Identity = 45/99 (45.45%), Postives = 66/99 (66.67%), Query Frame = 1

Query: 8   NLKFNFITYSIVKDITLLDSKNFHINVLGCKNLTFDHLTITAPDHSPNTDGIHLGNSEEI 67
           N++F  +T S +  IT  +SK FH+N+L CKN+T   + I AP  S NTDGIH+G S  +
Sbjct: 191 NIRFTGLTNSKINSITSTNSKLFHMNILNCKNITLSDIGIDAPPESLNTDGIHIGRSNGV 250

Query: 68  SIINTVIVTGNDCISVGYSNKEITISDVTCGPGHDINIG 107
           ++I   I TG+DC+S+G   + + + +V CGPGH I+IG
Sbjct: 251 NLIGAKIKTGDDCVSIGDGTENLIVENVECGPGHGISIG 289

BLAST of CmaCh11G010560.1 vs. NCBI nr
Match: gi|310753534|gb|ADP09681.1| (polygalacturonase [Cucurbita pepo])

HSP 1 Score: 166.4 bits (420), Expect = 2.8e-38
Identity = 79/99 (79.80%), Postives = 89/99 (89.90%), Query Frame = 1

Query: 8   NLKFNFITYSIVKDITLLDSKNFHINVLGCKNLTFDHLTITAPDHSPNTDGIHLGNSEEI 67
           NLKFNFIT SIVKDIT LDSKNFHINVL  KNLTFDHL ITAP +SPNTDGIHLG+SE++
Sbjct: 157 NLKFNFITNSIVKDITSLDSKNFHINVLAGKNLTFDHLKITAPHNSPNTDGIHLGDSEDV 216

Query: 68  SIINTVIVTGNDCISVGYSNKEITISDVTCGPGHDINIG 107
            I+NT I TG+DCISVGY+N++ITISDVTCGPGH I+IG
Sbjct: 217 YILNTAIATGDDCISVGYTNRKITISDVTCGPGHGISIG 255

BLAST of CmaCh11G010560.1 vs. NCBI nr
Match: gi|659097567|ref|XP_008449696.1| (PREDICTED: LOW QUALITY PROTEIN: exopolygalacturonase-like [Cucumis melo])

HSP 1 Score: 164.9 bits (416), Expect = 8.1e-38
Identity = 76/99 (76.77%), Postives = 89/99 (89.90%), Query Frame = 1

Query: 8   NLKFNFITYSIVKDITLLDSKNFHINVLGCKNLTFDHLTITAPDHSPNTDGIHLGNSEEI 67
           NLKFNF+T SIVKDIT LDSKN+H N+L CKNLTFDH+TITAP +SPNTDGIH+G+SE+I
Sbjct: 146 NLKFNFVTNSIVKDITSLDSKNYHFNLLACKNLTFDHVTITAPGNSPNTDGIHVGDSEQI 205

Query: 68  SIINTVIVTGNDCISVGYSNKEITISDVTCGPGHDINIG 107
           +I+NT I TG+DCISVG SNK+I ISDVTCGPGH I+IG
Sbjct: 206 NILNTNIATGDDCISVGISNKQIVISDVTCGPGHGISIG 244

BLAST of CmaCh11G010560.1 vs. NCBI nr
Match: gi|659097569|ref|XP_008449697.1| (PREDICTED: exopolygalacturonase-like [Cucumis melo])

HSP 1 Score: 164.5 bits (415), Expect = 1.1e-37
Identity = 76/99 (76.77%), Postives = 89/99 (89.90%), Query Frame = 1

Query: 8   NLKFNFITYSIVKDITLLDSKNFHINVLGCKNLTFDHLTITAPDHSPNTDGIHLGNSEEI 67
           NLKFNF+T SIVKDIT LDSKN+H N+L CKNLTFDH+TITAP +SPNTDGIH+G+SE+I
Sbjct: 145 NLKFNFVTNSIVKDITSLDSKNYHFNLLACKNLTFDHVTITAPGNSPNTDGIHVGDSEQI 204

Query: 68  SIINTVIVTGNDCISVGYSNKEITISDVTCGPGHDINIG 107
           +I+NT I TG+DCISVG SNK+I ISDVTCGPGH I+IG
Sbjct: 205 NILNTNIATGDDCISVGSSNKQIVISDVTCGPGHGISIG 243

BLAST of CmaCh11G010560.1 vs. NCBI nr
Match: gi|659067859|ref|XP_008441641.1| (PREDICTED: exopolygalacturonase-like [Cucumis melo])

HSP 1 Score: 162.9 bits (411), Expect = 3.1e-37
Identity = 77/99 (77.78%), Postives = 88/99 (88.89%), Query Frame = 1

Query: 8   NLKFNFITYSIVKDITLLDSKNFHINVLGCKNLTFDHLTITAPDHSPNTDGIHLGNSEEI 67
           NLK NFIT SIVKDIT LDSKN+HIN+LGCKNLTFDH+TITAP  SPNTDGIH+ +SEEI
Sbjct: 146 NLKLNFITNSIVKDITSLDSKNYHINLLGCKNLTFDHVTITAPGDSPNTDGIHVSSSEEI 205

Query: 68  SIINTVIVTGNDCISVGYSNKEITISDVTCGPGHDINIG 107
           +I+NT I TG+DCISVG +NK+I ISDVTCGPGH I+IG
Sbjct: 206 NILNTNIATGDDCISVGDTNKQIVISDVTCGPGHGISIG 244

BLAST of CmaCh11G010560.1 vs. NCBI nr
Match: gi|659134134|ref|XP_008467043.1| (PREDICTED: exopolygalacturonase-like, partial [Cucumis melo])

HSP 1 Score: 161.8 bits (408), Expect = 6.8e-37
Identity = 74/99 (74.75%), Postives = 89/99 (89.90%), Query Frame = 1

Query: 8   NLKFNFITYSIVKDITLLDSKNFHINVLGCKNLTFDHLTITAPDHSPNTDGIHLGNSEEI 67
           NLK NF+T SIVKDIT LDSKN+HIN+LGCKNLTFDH+TITAP +SPNTDGIH+ +SE+I
Sbjct: 107 NLKLNFVTNSIVKDITSLDSKNYHINLLGCKNLTFDHVTITAPGNSPNTDGIHVSSSEQI 166

Query: 68  SIINTVIVTGNDCISVGYSNKEITISDVTCGPGHDINIG 107
           +I+NT I TG+DCISVG +NK++ ISDVTCGPGH I+IG
Sbjct: 167 NILNTNIATGDDCISVGDTNKQVVISDVTCGPGHGISIG 205

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
PGLR_MEDSA2.8e-3057.58Polygalacturonase OS=Medicago sativa PE=2 SV=1[more]
PGLR_OENOR1.4e-2955.77Exopolygalacturonase (Fragment) OS=Oenothera organensis PE=2 SV=1[more]
PGLR_GOSBA6.8e-2956.57Polygalacturonase OS=Gossypium barbadense GN=G9 PE=2 SV=1[more]
PGLR2_PLAAC6.8e-2954.81Exopolygalacturonase (Fragment) OS=Platanus acerifolia GN=plaa2 PE=1 SV=1[more]
PGLR_GOSHI8.9e-2956.57Polygalacturonase OS=Gossypium hirsutum GN=G9 PE=2 SV=1[more]
Match NameE-valueIdentityDescription
E3VSV7_CUCPE1.9e-3879.80Polygalacturonase OS=Cucurbita pepo GN=PG1 PE=2 SV=1[more]
A0A0A0LX75_CUCSA6.2e-3776.53Uncharacterized protein OS=Cucumis sativus GN=Csa_1G066500 PE=3 SV=1[more]
A0A0A0KPH7_CUCSA1.1e-3674.49Uncharacterized protein OS=Cucumis sativus GN=Csa_5G266870 PE=3 SV=1[more]
A0A0A0KF15_CUCSA2.4e-3675.76Uncharacterized protein OS=Cucumis sativus GN=Csa_6G434410 PE=3 SV=1[more]
A0A0A0K6J6_CUCSA3.4e-3569.70Uncharacterized protein OS=Cucumis sativus GN=Csa_7G037450 PE=3 SV=1[more]
Match NameE-valueIdentityDescription
AT3G07840.14.3e-2953.54 Pectin lyase-like superfamily protein[more]
AT3G07820.15.6e-2954.55 Pectin lyase-like superfamily protein[more]
AT3G07830.11.6e-2853.54 Pectin lyase-like superfamily protein[more]
AT5G48140.14.7e-2854.55 Pectin lyase-like superfamily protein[more]
AT3G07850.11.0e-2245.45 Pectin lyase-like superfamily protein[more]
Match NameE-valueIdentityDescription
gi|310753534|gb|ADP09681.1|2.8e-3879.80polygalacturonase [Cucurbita pepo][more]
gi|659097567|ref|XP_008449696.1|8.1e-3876.77PREDICTED: LOW QUALITY PROTEIN: exopolygalacturonase-like [Cucumis melo][more]
gi|659097569|ref|XP_008449697.1|1.1e-3776.77PREDICTED: exopolygalacturonase-like [Cucumis melo][more]
gi|659067859|ref|XP_008441641.1|3.1e-3777.78PREDICTED: exopolygalacturonase-like [Cucumis melo][more]
gi|659134134|ref|XP_008467043.1|6.8e-3774.75PREDICTED: exopolygalacturonase-like, partial [Cucumis melo][more]
The following terms have been associated with this mRNA:
Vocabulary: INTERPRO
TermDefinition
IPR000743Glyco_hydro_28
IPR011050Pectin_lyase_fold/virulence
IPR012334Pectin_lyas_fold
Vocabulary: Molecular Function
TermDefinition
GO:0004650polygalacturonase activity
Vocabulary: Biological Process
TermDefinition
GO:0005975carbohydrate metabolic process
GO Assignments
This mRNA is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0005975 carbohydrate metabolic process
biological_process GO:0071555 cell wall organization
biological_process GO:0009094 L-phenylalanine biosynthetic process
biological_process GO:0005982 starch metabolic process
biological_process GO:0005985 sucrose metabolic process
biological_process GO:0000162 tryptophan biosynthetic process
biological_process GO:0006571 tyrosine biosynthetic process
cellular_component GO:0005576 extracellular region
molecular_function GO:0004650 polygalacturonase activity
molecular_function GO:0004106 chorismate mutase activity

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameType
CmaCh11G010560CmaCh11G010560gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameType
CmaCh11G010560.1CmaCh11G010560.1-proteinpolypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameType
CmaCh11G010560.1.CDS.2CmaCh11G010560.1.CDS.2CDS
CmaCh11G010560.1.CDS.1CmaCh11G010560.1.CDS.1CDS


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameType
CmaCh11G010560.1.exon.2CmaCh11G010560.1.exon.2exon
CmaCh11G010560.1.exon.1CmaCh11G010560.1.exon.1exon


Analysis Name: InterPro Annotations of Cucurbita maxima
Date Performed: 2017-05-20
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR000743Glycoside hydrolase, family 28PFAMPF00295Glyco_hydro_28coord: 8..106
score: 3.7
IPR011050Pectin lyase fold/virulence factorunknownSSF51126Pectin lyase-likecoord: 8..106
score: 3.31
IPR012334Pectin lyase foldGENE3DG3DSA:2.160.20.10coord: 8..106
score: 5.7
NoneNo IPR availablePANTHERPTHR31375FAMILY NOT NAMEDcoord: 8..106
score: 1.2
NoneNo IPR availablePANTHERPTHR31375:SF37PECTIN LYASE-LIKE SUPERFAMILY PROTEIN-RELATEDcoord: 8..106
score: 1.2