CmaCh11G008070.1 (mRNA) Cucurbita maxima (Rimu) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CmaCh11G008070.1
Type	mRNA
Organism	Cucurbita maxima (Cucurbita maxima (Rimu))
Description	Unknown protein
Location	Cma_Chr11 : 3944065 .. 3944652 (+)
Sequence length	506

Genome Viewer

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

TCCCTTCCACTTCCATGGTAGTGTAGAGAGAGAACGAGAAATACAGAGAGAGAATGACGGACTTGGAATGGAGCGAAGCAAGGAAGAGGATGATCGAAGATCAGGCAAAGGCAGAACTGGAATCTCTCCAACTACTTCATCCCAATCGTTTCGAATACCTAAAGCTCGAACTCAAATCCTTCATCCAACTTCTTCAATCGCAATCGCAATCGGAAGAGCTTTTTCATCAGCCGAACGCAGTCGAAGCCTCGAGACGACGATCGCCTTCCTCTCTCGCTCCTGATTCGCAAGGTCAGTGCCCGCTCTGCCTTCCGCTCCATCTCTTCTTCTTCTTTTTCTTTTCCGATTGTTTACTGATTCATGTGTTTTGTAGCAGAATCGAGTAGTTGTAGGAAGAGGAGGAAGATGGAGGAAGGAGGACAAATGAAAGTGTACGGGGACCGATTACAGAGAGAGATTGCTGAATCGGAAACGGGAGACAAGAACGGGCGGCGGAGGGATAGAGTTGATGTGGTTCTGGAAAGAGCCGTTGTTTGTCTCCGGAAGATTCAACGCTTCAAAACGGCTTTGATTTCCACCGCCTATTGA

mRNA sequence

TCCCTTCCACTTCCATGGTAGTGTAGAGAGAGAACGAGAAATACAGAGAGAGAATGACGGACTTGGAATGGAGCGAAGCAAGGAAGAGGATGATCGAAGATCAGGCAAAGGCAGAACTGGAATCTCTCCAACTACTTCATCCCAATCGTTTCGAATACCTAAAGCTCGAACTCAAATCCTTCATCCAACTTCTTCAATCGCAATCGCAATCGGAAGAGCTTTTTCATCAGCCGAACGCAGTCGAAGCCTCGAGACGACGATCGCCTTCCTCTCTCGCTCCTGATTCGCAAGCAGAATCGAGTAGTTGTAGGAAGAGGAGGAAGATGGAGGAAGGAGGACAAATGAAAGTGTACGGGGACCGATTACAGAGAGAGATTGCTGAATCGGAAACGGGAGACAAGAACGGGCGGCGGAGGGATAGAGTTGATGTGGTTCTGGAAAGAGCCGTTGTTTGTCTCCGGAAGATTCAACGCTTCAAAACGGCTTTGATTTCCACCGCCTATTGA

Coding sequence (CDS)

ATGACGGACTTGGAATGGAGCGAAGCAAGGAAGAGGATGATCGAAGATCAGGCAAAGGCAGAACTGGAATCTCTCCAACTACTTCATCCCAATCGTTTCGAATACCTAAAGCTCGAACTCAAATCCTTCATCCAACTTCTTCAATCGCAATCGCAATCGGAAGAGCTTTTTCATCAGCCGAACGCAGTCGAAGCCTCGAGACGACGATCGCCTTCCTCTCTCGCTCCTGATTCGCAAGCAGAATCGAGTAGTTGTAGGAAGAGGAGGAAGATGGAGGAAGGAGGACAAATGAAAGTGTACGGGGACCGATTACAGAGAGAGATTGCTGAATCGGAAACGGGAGACAAGAACGGGCGGCGGAGGGATAGAGTTGATGTGGTTCTGGAAAGAGCCGTTGTTTGTCTCCGGAAGATTCAACGCTTCAAAACGGCTTTGATTTCCACCGCCTATTGA

Protein sequence

MTDLEWSEARKRMIEDQAKAELESLQLLHPNRFEYLKLELKSFIQLLQSQSQSEELFHQPNAVEASRRRSPSSLAPDSQAESSSCRKRRKMEEGGQMKVYGDRLQREIAESETGDKNGRRRDRVDVVLERAVVCLRKIQRFKTALISTAY

Homology

[Close]

BLAST of CmaCh11G008070.1 vs. TrEMBL
Match: A0A0A0LX97_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_1G600880 PE=4 SV=1)

HSP 1 Score: 147.9 bits (372), Expect = 9.9e-33
Identity = 97/152 (63.82%), Postives = 114/152 (75.00%), Query Frame = 1


Query: 1   MTDLEWSEARKRMIEDQAKAELESLQLLHPNRFEYLKLELKSFIQLLQSQSQSEELFHQP 60
           ++ LEWS+ARK MIE+QA AEL+SLQLL+PNRFEYLKLELKSFI LLQSQ   E  F QP
Sbjct: 18  ISSLEWSKARKTMIEEQANAELQSLQLLYPNRFEYLKLELKSFIHLLQSQP--EHPFPQP 77

Query: 61  NA-VEASRRRSPSSLAPDSQAESSSCRKRRKMEEGGQMKVYGDRLQREIA--ESETGDKN 120
           N  + ++R  SPSS  PD+Q ESSSCRKRRK+ EG      G  LQ+E+A  E E+  K 
Sbjct: 78  NTNLTSNRSPSPSSFGPDTQ-ESSSCRKRRKVAEGRNNGRNG--LQKEVAEYEYESETKM 137

Query: 121 GRRRDRVDVVLERAVVCLRKIQRFKTALISTA 150
           GR +DRVDVVLERA VCL KI+RFK AL S+A
Sbjct: 138 GRGKDRVDVVLERAAVCLCKIRRFKMALFSSA 164

[Close]

BLAST of CmaCh11G008070.1 vs. TrEMBL
Match: M1BI59_SOLTU (Uncharacterized protein OS=Solanum tuberosum GN=PGSC0003DMG400017740 PE=4 SV=1)

HSP 1 Score: 74.7 bits (182), Expect = 1.1e-10
Identity = 59/129 (45.74%), Postives = 78/129 (60.47%), Query Frame = 1


Query: 16  DQAKAELESLQLLHPNRFEYLKLELKSFIQLLQSQSQSEELFHQPNAVEASRRRSPSSLA 75
           ++AK ELE L+  HPN+FEYLKLEL+SFI  L+S        H  + +       PSS  
Sbjct: 2   EEAKKELEILETQHPNKFEYLKLELRSFISFLES--------HYSDTL-------PSSSY 61

Query: 76  PDSQAESSSCRKRRKMEEGGQMKVYGDRLQREIAESETGDKNGRRRDRVDVVLERAVVCL 135
            D+Q ESSS RKR+    G + +    +LQR + +   G    R+R R+DVV+ERA  CL
Sbjct: 62  VDTQ-ESSSNRKRKNGSFGSKEQP-KKKLQR-VGQDTVG---CRKRSRIDVVMERAQACL 109

Query: 136 RKIQRFKTA 145
           RKIQRFKT+
Sbjct: 122 RKIQRFKTS 109

[Close]

BLAST of CmaCh11G008070.1 vs. TrEMBL
Match: K4BA24_SOLLC (Uncharacterized protein OS=Solanum lycopersicum PE=4 SV=1)

HSP 1 Score: 70.5 bits (171), Expect = 2.0e-09
Identity = 57/129 (44.19%), Postives = 76/129 (58.91%), Query Frame = 1


Query: 16  DQAKAELESLQLLHPNRFEYLKLELKSFIQLLQSQSQSEELFHQPNAVEASRRRSPSSLA 75
           ++AK ELE L+  HPN+FEYLKLEL+SFI  L+S        H  + +       PSS  
Sbjct: 2   EEAKKELEILETQHPNKFEYLKLELRSFISFLES--------HYSHTL-------PSSSY 61

Query: 76  PDSQAESSSCRKRRKMEEGGQMKVYGDRLQREIAESETGDKNGRRRDRVDVVLERAVVCL 135
            D+Q ESSS RKR+      + +    +LQR + +   G     +R R+DVV+ERA  CL
Sbjct: 62  VDTQ-ESSSNRKRKNGSFASKEEP-KKKLQR-VGQDTVG---CNKRSRIDVVMERAQACL 109

Query: 136 RKIQRFKTA 145
           RKIQRFKT+
Sbjct: 122 RKIQRFKTS 109

[Close]

BLAST of CmaCh11G008070.1 vs. TrEMBL
Match: W9RPZ6_9ROSA (Uncharacterized protein OS=Morus notabilis GN=L484_007791 PE=4 SV=1)

HSP 1 Score: 70.1 bits (170), Expect = 2.6e-09
Identity = 54/138 (39.13%), Postives = 81/138 (58.70%), Query Frame = 1


Query: 13  MIEDQAKAELESLQLLHPNRFEYLKLELKSFIQLLQSQSQSEELFHQPNAVEASRRRSPS 72
           M+E++AK EL +++  +PN  EYLKLELKSFI LLQS    + L    N+     +  P+
Sbjct: 3   MVEERAKEELRNIEAQYPNSHEYLKLELKSFIFLLQSHHHHDHLNILLNSDHT--QFFPT 62

Query: 73  SLAPDSQAESSSCRKRRKMEEGGQMKVYGDRLQ----REIAESETGDKNGRRRDRVDVVL 132
           S    +  ES+S RKR+K+ E   +    D+ +     +  E     +  +RRDRV++VL
Sbjct: 63  SSPAVATQESTSNRKRKKVSENHCIDNDSDKQELNQINQSPEDIVVKETKKRRDRVELVL 122

Query: 133 ERAVVCLRKIQRFKTALI 147
           ERA  CLRKI+  K++L+
Sbjct: 123 ERARACLRKIRHLKSSLL 138

[Close]

BLAST of CmaCh11G008070.1 vs. TrEMBL
Match: A0A0L9VCH8_PHAAN (Uncharacterized protein OS=Phaseolus angularis GN=LR48_Vigan09g142900 PE=4 SV=1)

HSP 1 Score: 69.7 bits (169), Expect = 3.4e-09
Identity = 58/155 (37.42%), Postives = 82/155 (52.90%), Query Frame = 1


Query: 6   WSEARKRMIEDQAKAELESLQLLHPNRFEYLKLELKSFIQLLQSQSQSEELFHQPNAVEA 65
           W+E +  M+E+ AK ELE L+  +PN+ EYLK ELKSFI  LQ+++   EL  + N    
Sbjct: 4   WNEGKGSMMEELAKEELELLEAQYPNQHEYLKNELKSFIFQLQTKNMDSELLLENNLCN- 63

Query: 66  SRRRSPSSLAPDSQAESSSCRKRRKMEEGGQMKVYGDRLQRE-----IAESETG------ 125
                 + L      ES+S   +RK  +        DR+  E      +E ET       
Sbjct: 64  ------NHLVFLDTEESTSLEGQRKSSDCSFEPASADRVVIEGEMSGSSELETPKSDLIK 123

Query: 126 --DKNGRRRDRVDVVLERAVVCLRKIQRFKTALIS 148
                 +R+DRVD+VLERA VCL+KI+  KT+L+S
Sbjct: 124 HFSSKKKRKDRVDLVLERAQVCLKKIKHLKTSLLS 151

[Close]

BLAST of CmaCh11G008070.1 vs. TAIR10
Match: AT5G36960.1 (AT5G36960.1 unknown protein)

HSP 1 Score: 54.3 bits (129), Expect = 7.5e-08
Identity = 55/150 (36.67%), Postives = 81/150 (54.00%), Query Frame = 1


Query: 7   SEARKRMIEDQAKAELESLQLLHPNRFEYLKLELKSFIQLLQSQSQSEELFHQPNAVEAS 66
           S + +  + + AK ELE LQ  +PNRF YLK +L+SFI  L+         H P      
Sbjct: 4   SSSWEMQLVETAKEELEILQSQYPNRFAYLKSDLQSFISHLRED-------HAPP----- 63

Query: 67  RRRSPSSLAPDSQAESSSCRKRRKMEEGGQMKVYGDRLQREIAESETG------DKNGRR 126
            R SPSS    +Q ESS+C  ++K ++    K   D L  + + S TG      +K G+R
Sbjct: 64  -RLSPSSSVVLTQ-ESSNCNYKQKHKK---RKCVMDNLGDQASSSTTGKIHKNNNKMGQR 123

Query: 127 -----RDRVDVVLERAVVCLRKIQRFKTAL 146
                ++RV++VLERA +CL+KI+  K +L
Sbjct: 124 VVTKKKNRVEMVLERAQLCLQKIRDVKASL 136

[Close]

BLAST of CmaCh11G008070.1 vs. NCBI nr
Match: gi|659100386|ref|XP_008451071.1| (PREDICTED: uncharacterized protein LOC103492458 [Cucumis melo])

HSP 1 Score: 155.6 bits (392), Expect = 6.8e-35
Identity = 99/149 (66.44%), Postives = 115/149 (77.18%), Query Frame = 1


Query: 1   MTDLEWSEARKRMIEDQAKAELESLQLLHPNRFEYLKLELKSFIQLLQSQSQSEELFHQP 60
           ++ LEWS+ARK MIE+QA  EL+SLQLL+PNRFEYLKLELKSFI LL  QSQSE  F QP
Sbjct: 40  ISSLEWSKARKTMIEEQANVELQSLQLLYPNRFEYLKLELKSFIHLL--QSQSEHPFPQP 99

Query: 61  NAVEASRRR-SPSSLAPDSQAESSSCRKRRKMEEGGQMKVYGDRLQREIAESETGDKNGR 120
           N +  S R  SP S  PD+Q ESSSCRKRRK+EEG   +  G  LQRE+AESE+  K GR
Sbjct: 100 NTILTSNRSPSPFSFGPDTQ-ESSSCRKRRKVEEGRNSRRNG--LQREVAESES--KIGR 159

Query: 121 RRDRVDVVLERAVVCLRKIQRFKTALIST 149
           R+DRV+VVLERA VCL KI+RFK AL S+
Sbjct: 160 RKDRVEVVLERAAVCLCKIRRFKMALFSS 181

[Close]

BLAST of CmaCh11G008070.1 vs. NCBI nr
Match: gi|449452807|ref|XP_004144150.1| (PREDICTED: uncharacterized protein LOC101216009 [Cucumis sativus])

HSP 1 Score: 147.9 bits (372), Expect = 1.4e-32
Identity = 97/152 (63.82%), Postives = 114/152 (75.00%), Query Frame = 1


Query: 1   MTDLEWSEARKRMIEDQAKAELESLQLLHPNRFEYLKLELKSFIQLLQSQSQSEELFHQP 60
           ++ LEWS+ARK MIE+QA AEL+SLQLL+PNRFEYLKLELKSFI LLQSQ   E  F QP
Sbjct: 18  ISSLEWSKARKTMIEEQANAELQSLQLLYPNRFEYLKLELKSFIHLLQSQP--EHPFPQP 77

Query: 61  NA-VEASRRRSPSSLAPDSQAESSSCRKRRKMEEGGQMKVYGDRLQREIA--ESETGDKN 120
           N  + ++R  SPSS  PD+Q ESSSCRKRRK+ EG      G  LQ+E+A  E E+  K 
Sbjct: 78  NTNLTSNRSPSPSSFGPDTQ-ESSSCRKRRKVAEGRNNGRNG--LQKEVAEYEYESETKM 137

Query: 121 GRRRDRVDVVLERAVVCLRKIQRFKTALISTA 150
           GR +DRVDVVLERA VCL KI+RFK AL S+A
Sbjct: 138 GRGKDRVDVVLERAAVCLCKIRRFKMALFSSA 164

[Close]

BLAST of CmaCh11G008070.1 vs. NCBI nr
Match: gi|731313342|ref|XP_010679793.1| (PREDICTED: uncharacterized protein LOC104895078 [Beta vulgaris subsp. vulgaris])

HSP 1 Score: 75.5 bits (184), Expect = 8.9e-11
Identity = 63/137 (45.99%), Postives = 76/137 (55.47%), Query Frame = 1


Query: 11  KRMIEDQAKAELESLQLLHPNRFEYLKLELKSFIQLLQSQSQSEELF--HQPNAVEASRR 70
           +RMIE +AK EL+ L+  HPNRF+YLKLELKSFI LLQSQ     LF  H P        
Sbjct: 2   ERMIE-KAKEELQMLETQHPNRFDYLKLELKSFISLLQSQ-----LFIDHLPTT------ 61

Query: 71  RSPSSLAPDSQAESSSCRKRRKMEEGGQMKVYGDRLQREIAESETGDKNGRRRDRVDVVL 130
            S ++ A  S      C KRRK+E            + E  E E   K  R+ DRVDVVL
Sbjct: 62  -SATTQASTSMKRKRVCLKRRKVENETSW-------ENEGCEIEYEKKARRQSDRVDVVL 118

Query: 131 ERAVVCLRKIQRFKTAL 146
           E+A  CLRKI+  K +L
Sbjct: 122 EKAQACLRKIEEVKFSL 118

[Close]

BLAST of CmaCh11G008070.1 vs. NCBI nr
Match: gi|565395156|ref|XP_006363211.1| (PREDICTED: uncharacterized protein LOC102581035 [Solanum tuberosum])

HSP 1 Score: 74.7 bits (182), Expect = 1.5e-10
Identity = 59/129 (45.74%), Postives = 78/129 (60.47%), Query Frame = 1


Query: 16  DQAKAELESLQLLHPNRFEYLKLELKSFIQLLQSQSQSEELFHQPNAVEASRRRSPSSLA 75
           ++AK ELE L+  HPN+FEYLKLEL+SFI  L+S        H  + +       PSS  
Sbjct: 2   EEAKKELEILETQHPNKFEYLKLELRSFISFLES--------HYSDTL-------PSSSY 61

Query: 76  PDSQAESSSCRKRRKMEEGGQMKVYGDRLQREIAESETGDKNGRRRDRVDVVLERAVVCL 135
            D+Q ESSS RKR+    G + +    +LQR + +   G    R+R R+DVV+ERA  CL
Sbjct: 62  VDTQ-ESSSNRKRKNGSFGSKEQP-KKKLQR-VGQDTVG---CRKRSRIDVVMERAQACL 109

Query: 136 RKIQRFKTA 145
           RKIQRFKT+
Sbjct: 122 RKIQRFKTS 109

[Close]

BLAST of CmaCh11G008070.1 vs. NCBI nr
Match: gi|951042837|ref|XP_014518243.1| (PREDICTED: uncharacterized protein LOC106775609 [Vigna radiata var. radiata])

HSP 1 Score: 73.2 bits (178), Expect = 4.4e-10
Identity = 60/155 (38.71%), Postives = 83/155 (53.55%), Query Frame = 1


Query: 6   WSEARKRMIEDQAKAELESLQLLHPNRFEYLKLELKSFIQLLQSQSQSEELFHQPNAVEA 65
           W+E +  M+E+ AK ELE L+  +PN+ EYLK ELKSFI  LQS++   EL  + N    
Sbjct: 4   WNEGKGSMMEELAKEELELLEAQYPNQHEYLKNELKSFIFQLQSKNLDSELLLENNLCN- 63

Query: 66  SRRRSPSSLAPDSQAESSSCRKRRKMEEGGQMKVYGDRLQRE-----IAESETG------ 125
                 + L      ES+S   +RK  + G      DR+  E      +E ET       
Sbjct: 64  ------NHLVFLDTEESTSLEGQRKSSDCGFEPASADRVVMEGETTGSSELETPKSDVIK 123

Query: 126 --DKNGRRRDRVDVVLERAVVCLRKIQRFKTALIS 148
                 +R+DRVD+VLERA VCL+KI+  KT+L+S
Sbjct: 124 HFSSRKKRKDRVDLVLERAQVCLKKIKHLKTSLLS 151

The following BLAST results are available for this feature:

BLAST of CmaCh11G008070.1 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of CmaCh11G008070.1 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0LX97_CUCSA	9.9e-33	63.82	Uncharacterized protein OS=Cucumis sativus GN=Csa_1G600880 PE=4 SV=1	[more]
M1BI59_SOLTU	1.1e-10	45.74	Uncharacterized protein OS=Solanum tuberosum GN=PGSC0003DMG400017740 PE=4 SV=1	[more]
K4BA24_SOLLC	2.0e-09	44.19	Uncharacterized protein OS=Solanum lycopersicum PE=4 SV=1	[more]
W9RPZ6_9ROSA	2.6e-09	39.13	Uncharacterized protein OS=Morus notabilis GN=L484_007791 PE=4 SV=1	[more]
A0A0L9VCH8_PHAAN	3.4e-09	37.42	Uncharacterized protein OS=Phaseolus angularis GN=LR48_Vigan09g142900 PE=4 SV=1	[more]

BLAST of CmaCh11G008070.1 vs. TAIR10


Match Name	E-value	Identity	Description
AT5G36960.1	7.5e-08	36.67	unknown protein	[more]

BLAST of CmaCh11G008070.1 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|659100386\|ref\|XP_008451071.1\|	6.8e-35	66.44	PREDICTED: uncharacterized protein LOC103492458 [Cucumis melo]	[more]
gi\|449452807\|ref\|XP_004144150.1\|	1.4e-32	63.82	PREDICTED: uncharacterized protein LOC101216009 [Cucumis sativus]	[more]
gi\|731313342\|ref\|XP_010679793.1\|	8.9e-11	45.99	PREDICTED: uncharacterized protein LOC104895078 [Beta vulgaris subsp. vulgaris]	[more]
gi\|565395156\|ref\|XP_006363211.1\|	1.5e-10	45.74	PREDICTED: uncharacterized protein LOC102581035 [Solanum tuberosum]	[more]
gi\|951042837\|ref\|XP_014518243.1\|	4.4e-10	38.71	PREDICTED: uncharacterized protein LOC106775609 [Vigna radiata var. radiata]	[more]

GO Annotation

GO Assignments

This mRNA is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
CmaCh11G008070	CmaCh11G008070	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
CmaCh11G008070.1	CmaCh11G008070.1-protein	polypeptide

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
CmaCh11G008070.1.exon.2	CmaCh11G008070.1.exon.2	exon
CmaCh11G008070.1.exon.1	CmaCh11G008070.1.exon.1	exon

The following five_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
CmaCh11G008070.1.five_prime_UTR.1	CmaCh11G008070.1.five_prime_UTR.1	five_prime_UTR

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
CmaCh11G008070.1.CDS.1	CmaCh11G008070.1.CDS.1	CDS
CmaCh11G008070.1.CDS.2	CmaCh11G008070.1.CDS.2	CDS