CmaCh10G011060.1 (mRNA) Cucurbita maxima (Rimu) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CmaCh10G011060.1
Type	mRNA
Organism	Cucurbita maxima (Cucurbita maxima (Rimu))
Description	F-box protein interaction domain protein
Location	Cma_Chr10 : 7414211 .. 7415469 (+)
Sequence length	1161

Genome Viewer

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGTTCATGATCAAGGCAACAAAATTTCCGAACTCGTACCTGATGTCATCGAGCTAATAGTCAGCAAACTCCCTTCCTATTGTTTGCCGAGTTGTAGGCTGGTCTGCAAAACCTGGAACAATGTAATCTTAAGCTCTAAGCATCACCCTTCAATCTCGGCTGCTTCCAACTTCTTCCTTGCACATGTTTATTCAAACAGCCGTGATCGTCCCAATTCTCATTGCTTTCGTAATCTCCAATGCTTGGAATTGGATCCCAACCACGTGGAAGGGGTGAGGAATGTTGCTTCATTCAACTTGAGTCGTAAGTATTTTAAACGTTCCTTTATCTCAACTATCAATTCGTGCAATGGACTCTTAGCTTTCGTGGTCACTAAAAATACAAATAGCTGGCTTAGCCCGAATAGTGTCGTGATATTAAATCCCATGACGAATGAGTACTTCGAACTCCCCAAAGATGAATTCAAAGGGAATTGTTTTACTTGCTTCTATGGATTTGGATTTTGTCCGAAAACGAAGCAATACAAAGTAGTAAGAAGCTATACTGTTCGTGATAGAAACTCCATCGTCCATAACTACAAAACAGAGATTTTTGCCATTGGGACCCAGCCGGAATGGACGAGCATTGAGTCACCAAATTGTTCTTTTAATGGATGTCATGGTGTTTACTCAAACGGAGGGTTGCATTGGATTGGACAAAATAATCTTGGTCCAGATGTCATTTATCGTTTAAATATGGAAGATGAGAAATATGAGCAGATTCCTTTTCCTAATGAAGGCGGTTATTTTCCTTGCATTGGAATATTTAATGGTGCAGTTCATTTAACTCTTTCTATGGAGGAGTGTGAGTATAGGGTGTGGAAGATGAAAGAAGATGGTTCGTGGATTAAAGCATTTAACGTCATCGTAACCGATATCAATAAAAATATACTTTCCTTCTCAAAATCGACAGTGGAACAGATTAAAATATGTAAAGATGGAAAGATCTTGTGTCTTTGGGCTGGAGTTGAATTAGTATTGTATAATCCCACCACCAACAAGATGGAGAAGATAATAGATGATGCAACTGTGAGAGATTTTTCCATTTACCACCTTGACTGTTTTAATTTTAATGCCCTTCCCGATATTTTAACAGGAAAATTAGGTAAATTTTGAGAGTAATTTGTTGTATTACGCATTCAATCTTGAGATTGAGATTTTATTTTAAATATGAGTTGAATTTAATTTTGATTATAAGTTTAGTGTTTAATTTGATATAA

mRNA sequence

ATGGTTCATGATCAAGGCAACAAAATTTCCGAACTCGTACCTGATGTCATCGAGCTAATAGTCAGCAAACTCCCTTCCTATTGTTTGCCGAGTTGTAGGCTGGTCTGCAAAACCTGGAACAATGTAATCTTAAGCTCTAAGCATCACCCTTCAATCTCGGCTGCTTCCAACTTCTTCCTTGCACATGTTTATTCAAACAGCCGTGATCGTCCCAATTCTCATTGCTTTCGTAATCTCCAATGCTTGGAATTGGATCCCAACCACGTGGAAGGGGTGAGGAATGTTGCTTCATTCAACTTGAGTCGTAAGTATTTTAAACGTTCCTTTATCTCAACTATCAATTCGTGCAATGGACTCTTAGCTTTCGTGGTCACTAAAAATACAAATAGCTGGCTTAGCCCGAATAGTGTCGTGATATTAAATCCCATGACGAATGAGTACTTCGAACTCCCCAAAGATGAATTCAAAGGGAATTGTTTTACTTGCTTCTATGGATTTGGATTTTGTCCGAAAACGAAGCAATACAAAGTAGTAAGAAGCTATACTGTTCGTGATAGAAACTCCATCGTCCATAACTACAAAACAGAGATTTTTGCCATTGGGACCCAGCCGGAATGGACGAGCATTGAGTCACCAAATTGTTCTTTTAATGGATGTCATGGTGTTTACTCAAACGGAGGGTTGCATTGGATTGGACAAAATAATCTTGGTCCAGATGTCATTTATCGTTTAAATATGGAAGATGAGAAATATGAGCAGATTCCTTTTCCTAATGAAGGCGGTTATTTTCCTTGCATTGGAATATTTAATGGTGCAGTTCATTTAACTCTTTCTATGGAGGAGTGTGAGTATAGGGTGTGGAAGATGAAAGAAGATGGTTCGTGGATTAAAGCATTTAACGTCATCGTAACCGATATCAATAAAAATATACTTTCCTTCTCAAAATCGACAGTGGAACAGATTAAAATATGTAAAGATGGAAAGATCTTGTGTCTTTGGGCTGGAGTTGAATTAGTATTGTATAATCCCACCACCAACAAGATGGAGAAGATAATAGATGATGCAACTGTGAGAGATTTTTCCATTTACCACCTTGACTGTTTTAATTTTAATGCCCTTCCCGATATTTTAACAGGAAAATTAGTGTTTAATTTGATATAA

Coding sequence (CDS)

ATGGTTCATGATCAAGGCAACAAAATTTCCGAACTCGTACCTGATGTCATCGAGCTAATAGTCAGCAAACTCCCTTCCTATTGTTTGCCGAGTTGTAGGCTGGTCTGCAAAACCTGGAACAATGTAATCTTAAGCTCTAAGCATCACCCTTCAATCTCGGCTGCTTCCAACTTCTTCCTTGCACATGTTTATTCAAACAGCCGTGATCGTCCCAATTCTCATTGCTTTCGTAATCTCCAATGCTTGGAATTGGATCCCAACCACGTGGAAGGGGTGAGGAATGTTGCTTCATTCAACTTGAGTCGTAAGTATTTTAAACGTTCCTTTATCTCAACTATCAATTCGTGCAATGGACTCTTAGCTTTCGTGGTCACTAAAAATACAAATAGCTGGCTTAGCCCGAATAGTGTCGTGATATTAAATCCCATGACGAATGAGTACTTCGAACTCCCCAAAGATGAATTCAAAGGGAATTGTTTTACTTGCTTCTATGGATTTGGATTTTGTCCGAAAACGAAGCAATACAAAGTAGTAAGAAGCTATACTGTTCGTGATAGAAACTCCATCGTCCATAACTACAAAACAGAGATTTTTGCCATTGGGACCCAGCCGGAATGGACGAGCATTGAGTCACCAAATTGTTCTTTTAATGGATGTCATGGTGTTTACTCAAACGGAGGGTTGCATTGGATTGGACAAAATAATCTTGGTCCAGATGTCATTTATCGTTTAAATATGGAAGATGAGAAATATGAGCAGATTCCTTTTCCTAATGAAGGCGGTTATTTTCCTTGCATTGGAATATTTAATGGTGCAGTTCATTTAACTCTTTCTATGGAGGAGTGTGAGTATAGGGTGTGGAAGATGAAAGAAGATGGTTCGTGGATTAAAGCATTTAACGTCATCGTAACCGATATCAATAAAAATATACTTTCCTTCTCAAAATCGACAGTGGAACAGATTAAAATATGTAAAGATGGAAAGATCTTGTGTCTTTGGGCTGGAGTTGAATTAGTATTGTATAATCCCACCACCAACAAGATGGAGAAGATAATAGATGATGCAACTGTGAGAGATTTTTCCATTTACCACCTTGACTGTTTTAATTTTAATGCCCTTCCCGATATTTTAACAGGAAAATTAGTGTTTAATTTGATATAA

Protein sequence

MVHDQGNKISELVPDVIELIVSKLPSYCLPSCRLVCKTWNNVILSSKHHPSISAASNFFLAHVYSNSRDRPNSHCFRNLQCLELDPNHVEGVRNVASFNLSRKYFKRSFISTINSCNGLLAFVVTKNTNSWLSPNSVVILNPMTNEYFELPKDEFKGNCFTCFYGFGFCPKTKQYKVVRSYTVRDRNSIVHNYKTEIFAIGTQPEWTSIESPNCSFNGCHGVYSNGGLHWIGQNNLGPDVIYRLNMEDEKYEQIPFPNEGGYFPCIGIFNGAVHLTLSMEECEYRVWKMKEDGSWIKAFNVIVTDINKNILSFSKSTVEQIKICKDGKILCLWAGVELVLYNPTTNKMEKIIDDATVRDFSIYHLDCFNFNALPDILTGKLVFNLI

Homology

[Close]

BLAST of CmaCh10G011060.1 vs. TrEMBL
Match: A0A0A0M1M5_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_1G572960 PE=4 SV=1)

HSP 1 Score: 289.7 bits (740), Expect = 5.4e-75
Identity = 164/391 (41.94%), Postives = 228/391 (58.31%), Query Frame = 1


Query: 7   NKISELVPDVIELIVSKLPSYCLPSCRLVCKTWNNVILSSKHHPSISAASNFFLAHVYSN 66
           NK SEL PDV++LI SKLP + LP+CRLV  TWNN+I S K  PSIS  S+ F A  YS+
Sbjct: 11  NKRSELPPDVLQLIFSKLPFFNLPTCRLVSTTWNNLISSCKFDPSISI-SHLFFARFYSS 70

Query: 67  SRDRPNSHCFRNLQCLELDPNHVEGVRNVASFNLSRKYFKRSF-ISTINSCNGLLAFVVT 126
                      NL C+E DP H EG+  VASF         S  I+ INSC+GL++ ++ 
Sbjct: 71  RHP--------NLHCVEFDPQHAEGMSTVASFAFHPDLSSGSCRITIINSCSGLISLIIN 130

Query: 127 KNTNSWLSPNSVVILNPMTNEYFELPKDEFKGNCFTCF-YGFGFCPKTKQYKVVRSYTVR 186
           K        + V +LNP+TNEYF+LP    KG+    + YG GF P T QYK+ R++   
Sbjct: 131 KRRRRGHRLDLVCVLNPITNEYFKLPTSRSKGDRVPNYCYGLGFSPTTNQYKLARTHFTH 190

Query: 187 DRNSIVHNYKTEIFAIGTQPEWTSIESPNCSFNGCHGVYSNGGLHWIGQNNLG------- 246
           D       +  +IFA GT  EWT + S     N  HGVY NGGL+W+G   L        
Sbjct: 191 DE------FIVDIFAFGTSCEWTPVGSVPNFLNEYHGVYLNGGLYWVGSQKLPNGGISDY 250

Query: 247 PDVIYRLNMEDEKYEQIPFPNEGGYFPCIGIFNGAVHLTLSMEECEYRVWKMKEDGSWIK 306
            +VIYRL+++DEK+E+I FP +GG  P I ++NG ++LT   E+ +Y  WKM+ED SW K
Sbjct: 251 TEVIYRLDLKDEKFEKISFPLDGGDDPYIAVYNGTLYLTFCCEDFDYHAWKMEEDFSWSK 310

Query: 307 AFNVIVTDINKNILSFSK--STVEQIKICKDGKILCLWAGVELVLYNPTTNKMEKIIDDA 366
            F + + +   + L        ++ IK C+DG ILCL+AG+ L+LY+P+T  +E +    
Sbjct: 311 EFVLALPENVHHSLRHHPIGYYLQLIKFCEDGNILCLYAGILLILYDPSTQTVEIL---- 370

Query: 367 TVRDFSI------YHLDCFNFNALPDILTGK 381
           T +DF I      + ++ F+FN+L +IL GK
Sbjct: 371 TNQDFEIKEAMWVHQIESFSFNSLHNILAGK 382

[Close]

BLAST of CmaCh10G011060.1 vs. TrEMBL
Match: A0A0A0KJY9_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_6G515480 PE=4 SV=1)

HSP 1 Score: 255.8 bits (652), Expect = 8.6e-65
Identity = 157/390 (40.26%), Postives = 227/390 (58.21%), Query Frame = 1


Query: 10  SELVPD-VIELIVSKLPSYCLPSCRLVCKTWNNVILSSKHHPSISAASNFFLAHVYSNSR 69
           SE  PD +I++I+SK+P + L SCRLVCK+WNN+IL+ K  PS+      FL+  Y    
Sbjct: 15  SEFPPDNIIQVILSKVPLFNLTSCRLVCKSWNNLILTCKFDPSL------FLSFAY---- 74

Query: 70  DRPNSHCFRNLQCLELDPNHVEGVRNVASFNLSRKY-FKRSFISTINSCNGLLAFVVTKN 129
           D P+    R L C++ DP + EG+ ++ SF    K+    S IS IN+CNGLL+ +++K 
Sbjct: 75  DCPS----RTLYCVDFDPMYFEGMNSIGSFTFHPKFSTSDSSISIINACNGLLSLLISKR 134

Query: 130 TNSWLSPNSVVILNPMTNEYFELPKDEFKGNCF---TCFYGFGFCPKTKQYKVVRSYTVR 189
               +S   + ILNPMTNEYF+ P ++ K +C       YG GF PKTKQYK+ R+    
Sbjct: 135 KLGSVS-YVLGILNPMTNEYFKFPAEKSKSHCCCGRLYSYGLGFNPKTKQYKIARTSFRP 194

Query: 190 DRNSIVHNYKTEIFAIG-TQPEWTSIESPNCSFNGCHGVYSNGGLHWIGQ----NNLGPD 249
           D ++ +     EIF  G T   WT +          HGVY  GGL+W+      ++    
Sbjct: 195 DESTTL----VEIFTFGSTHQVWTPVGFLPSLVVEDHGVYFKGGLYWVANQPDPHDSSIS 254

Query: 250 VIYRLNMEDEKYEQIPFPNE-GGYFPCIGIFNGAVHLTLSMEECEYRVWKMKEDGSWIKA 309
            IYRL++E+EK E+I  P   GG+F   G+F+G ++LT+S    +Y+VWKMK++ SWIKA
Sbjct: 255 AIYRLDLENEKLEKISCPQYIGGHF-FFGVFDGTLYLTVSKNN-KYQVWKMKDNFSWIKA 314

Query: 310 FNVIVTDINKNIL-------SFSKSTVEQIKICKDGKILCLWAGVELVLYNPTTNKMEKI 369
           F   V    +N+         +  S ++ IK C+DGKILCL AG+ L+LY+P T   E +
Sbjct: 315 F---VISRPRNLCHPDHPHQPWGVSQLDPIKACEDGKILCLLAGLHLILYDPKTKSAEIL 374

Query: 370 IDDA--TVRDFSIYHLDCFNFNALPDILTG 380
            D +    +   ++H+D FNFN+LP IL G
Sbjct: 375 TDQSVKVEKHLHVHHIDAFNFNSLPSILAG 380

[Close]

BLAST of CmaCh10G011060.1 vs. TrEMBL
Match: A0A0A0KSJ2_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_5G643290 PE=4 SV=1)

HSP 1 Score: 157.9 bits (398), Expect = 2.5e-35
Identity = 125/396 (31.57%), Postives = 195/396 (49.24%), Query Frame = 1


Query: 11  ELVPDVIELIVSKLPSYCLPSCRLVCKTWNNVIL----SSKHHPSISAASNF---FLAHV 70
           +L P+V+E+I+ KL    LP+CRLV +TWN++IL    SSK  P++  A+++   +  + 
Sbjct: 15  QLPPNVVEVILPKLTISDLPACRLVSRTWNHLILNYASSSKFIPNLFLAASYEIHYSRNC 74

Query: 71  YSNSRDRPNSHCFRNLQCLELDPNHVEGVRNVASFNLSRKYFKRSFISTINSCNGLLAFV 130
             N   RP   C   + C++++  +      +ASF      +    I  +NSCNGLL   
Sbjct: 75  NCNPHCRPTFKCNPKMYCIDINRTN----NLIASFVFDNNDWPYK-IKILNSCNGLLYIH 134

Query: 131 VTKNTNSWLSPNSVVILNPMTNEYFELP-KDEFKGNCFTCFYGFGFCPKTKQYKVVRSYT 190
              + N         ILNPMTNE+F L  + + K    +CFYGFGF  KTKQYK+ ++  
Sbjct: 135 KVGDENFCNG-----ILNPMTNEFFILSTQPKVKNEDISCFYGFGFNLKTKQYKLFKAIH 194

Query: 191 VRDRNSIVHNYKTEIFAIGTQPE---WTSIESPNCSFNGCHGVYSNGGLHWIGQNNLGPD 250
             + + ++     E+   G   E   W  +      F  C GVY NG ++WIG+      
Sbjct: 195 DEEDSHLM----MEVMRFGKNEETKEWRHLTCLPFVFY-CDGVYLNGVIYWIGRQKENKS 254

Query: 251 VIYRLNMEDEKYEQI------PFPNEGGYFPCIGIFNGAVHLTLSME-EC--EYRVWKMK 310
           VIY LN+E EK E I      P  N   Y   IG +NG ++ T+ +   C  + ++W M+
Sbjct: 255 VIYSLNVETEKIESITVLKVDPSYNTSDYGYYIGKYNGNLYATIWIHGTCCKKVQLWMMQ 314

Query: 311 EDGSWIKAFNVIVTDINKNILSFSKSTVEQIKICKDGKILCLWAGVELVL-YNPTTNKME 370
               W+K F  +V DI      +  + +  +KI +DG+    + G  L+L Y+ T  +++
Sbjct: 315 GKDCWVKEF--VVHDIEDR---YVDAFLVLVKIFEDGE-RWFYVGSRLILCYDKTGTQIK 374

Query: 371 KIIDDATVRD------FSIYHLDCFNFNALPDILTG 380
           K      V +        + H D  NF +LP+IL G
Sbjct: 375 KKCRMKRVSNGRGNLVGQLCHFDSLNFGSLPNILDG 389

[Close]

BLAST of CmaCh10G011060.1 vs. TrEMBL
Match: A0A0A0LSE0_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_1G011590 PE=4 SV=1)

HSP 1 Score: 146.7 bits (369), Expect = 5.7e-32
Identity = 126/397 (31.74%), Postives = 184/397 (46.35%), Query Frame = 1


Query: 9   ISELVPDVIELIVSKLPSYCLPSCRLVCKTWNNVILSSKHHPSISAASNFFL-----AHV 68
           +S L  D+ + I SKL    LP+CR+VCK WN +IL      S    ++F L      H 
Sbjct: 7   VSGLPSDIGKTIFSKLLVSNLPACRVVCKAWNELILDHASSASKFLTNDFILFTCDVLHP 66

Query: 69  Y--SNSRDRPNSHCFR--NLQCLELDPNHVEGVRNVASFNLSRKYFKRSFISTINSCNGL 128
           +   ++   PN HC R  NL  L+LD +    V   +SF     Y        INSCNGL
Sbjct: 67  FPCPDNHTNPNMHCLRFDNLD-LDLDLDLELEVNKSSSFEAGVVY------KLINSCNGL 126

Query: 129 LAFVVTKNTNSWLSPNSVVILNPMTNEYFELPKDEFKGNCFTCFYGFGFCPKTKQYKVVR 188
           L                V I NPMTNE+F++P DE         YGFGF P TKQYK+ R
Sbjct: 127 LLIYKLPLCFPGEFLLRVGIFNPMTNEFFQVPHDEI----VEYHYGFGFIPATKQYKLFR 186

Query: 189 -----SYTVRDRNSIVHNYKTEIFAIG-------TQPEWTSIES-PNCSFNGCHGVYSNG 248
                +    + NS+ H    ++   G        Q +W  + S P    N  HG + NG
Sbjct: 187 VNFPLNVRPEEPNSVSH---LDVLTFGRSEIIDPKQSQWRRLYSLPGGVEN--HGAHVNG 246

Query: 249 GLHWIGQNNLGPD-VIYRLNMEDEKYE-QIPFPNEGGYFPCIGIFNGAVHLTLSMEECEY 308
            ++W+G+     + V+Y L++E EK +           +  I  FNG V+    MEE   
Sbjct: 247 VIYWLGEGKEQNEYVVYTLDVETEKIQLSAVLEVVNPMWMSIQQFNGTVYAVFHMEEAT- 306

Query: 309 RVWKMKEDGSWIKAFNVIVTDINKNILSFSKSTVEQIKICKDGKILCLWAGVELVLYNPT 368
           +VW+M+E  SWI+ F  ++ D N  +          +K  ++G++LC+       LYNP+
Sbjct: 307 QVWRMQEKNSWIRDF--VIDDCNLTL----------VKAYENGEMLCMVKPTVFWLYNPS 366

Query: 369 TNKMEKIIDDATVRD--FSIYHLDCFNFNALPDILTG 380
           T   +K++     +     I HL+  NF +L +IL G
Sbjct: 367 TGS-KKVLSLRNEKKIFLGICHLE-LNFGSLLNILAG 372

[Close]

BLAST of CmaCh10G011060.1 vs. TrEMBL
Match: A0A0A0LPC6_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_1G014420 PE=4 SV=1)

HSP 1 Score: 144.8 bits (364), Expect = 2.2e-31
Identity = 115/404 (28.47%), Postives = 183/404 (45.30%), Query Frame = 1


Query: 12  LVPDVIELIVSKLPSYCLPSCRLVCKTWNNVILSSKHHPSISAASNFFLAHVYSNSRDRP 71
           L P + + I SKL    LPSCR VCKTWN+++L       +   +N FL  + ++ R   
Sbjct: 42  LPPLIAKTIFSKLVISNLPSCRFVCKTWNHLVLHYASSTQLQFLTNAFL--LSTSDRMLN 101

Query: 72  NSHCFRNLQCLELDPNHVEGVRNVASFNLSRKYFKRS----------FISTINSCNGLLA 131
              C   + C+ LD        N   F+L  ++ K             I   + CNGL+ 
Sbjct: 102 YELCNPKMHCINLDNRQSS---NDVDFDLEWEFIKSGSLQFYGDWTFMILLAHPCNGLM- 161

Query: 132 FVVTKNTNSWLSPNSVVILNPMTNEYFELPKDEFKGNCFTCFYGFGFCPKTKQYKVVR-- 191
           F+   +  +W       I NPMTNE+F++ + +   + +   YGFG    +KQYK+ R  
Sbjct: 162 FISKCSDYTWCQG----IFNPMTNEFFQVSEQDTFDDFY--HYGFGLSAISKQYKLFRVS 221

Query: 192 ---SYTVRDRNSIVH-----NYKTEIFAIG--------TQPEWTSIESPNCSFNGCHGVY 251
               Y+ R R  I       +Y  E+   G           +W  + + +C     HGVY
Sbjct: 222 EAIPYSERFRLMITFGRDDTHYTMEVLTFGRSGTNHIPIHNQWRHLHNLSCDL--IHGVY 281

Query: 252 SNGGLHWIGQNNLGPD----VIYRLNMEDEKYEQIPF----PNEGGYFPCIGIFNGAVHL 311
            NG ++W+G+     +    VIY L++E E+ E         ++G   P  G      ++
Sbjct: 282 LNGIIYWLGKEKGKKEKKEYVIYALDVETEQIEMSVILQVQASDGKMHPFNGTIYALFYI 341

Query: 312 TLSMEECEYRVWKMKEDGSWIKAFNVIVTDINKNILSFSKSTVEQIKICKDGKILCLWAG 371
               +    +VW M+E  SWI+ F  ++ DI+K         +E IKI +DG+IL L   
Sbjct: 342 NWEKDSRTIQVWSMQEKCSWIRQF--VIRDISK-----EWGCLELIKIFEDGEILFLIDS 401

Query: 372 VELVLYNPTTNKMEKIIDDATVRDFSIYHLDCFNFNALPDILTG 380
                Y+P T K ++II     ++  +  ++C NF +LP+IL G
Sbjct: 402 DFFCFYHPLTEK-KRIISKNQKKNRFVCQIECLNFGSLPEILEG 423

[Close]

BLAST of CmaCh10G011060.1 vs. NCBI nr
Match: gi|449436028|ref|XP_004135796.1| (PREDICTED: putative F-box protein At1g46984 [Cucumis sativus])

HSP 1 Score: 289.7 bits (740), Expect = 7.8e-75
Identity = 164/391 (41.94%), Postives = 228/391 (58.31%), Query Frame = 1


Query: 7   NKISELVPDVIELIVSKLPSYCLPSCRLVCKTWNNVILSSKHHPSISAASNFFLAHVYSN 66
           NK SEL PDV++LI SKLP + LP+CRLV  TWNN+I S K  PSIS  S+ F A  YS+
Sbjct: 11  NKRSELPPDVLQLIFSKLPFFNLPTCRLVSTTWNNLISSCKFDPSISI-SHLFFARFYSS 70

Query: 67  SRDRPNSHCFRNLQCLELDPNHVEGVRNVASFNLSRKYFKRSF-ISTINSCNGLLAFVVT 126
                      NL C+E DP H EG+  VASF         S  I+ INSC+GL++ ++ 
Sbjct: 71  RHP--------NLHCVEFDPQHAEGMSTVASFAFHPDLSSGSCRITIINSCSGLISLIIN 130

Query: 127 KNTNSWLSPNSVVILNPMTNEYFELPKDEFKGNCFTCF-YGFGFCPKTKQYKVVRSYTVR 186
           K        + V +LNP+TNEYF+LP    KG+    + YG GF P T QYK+ R++   
Sbjct: 131 KRRRRGHRLDLVCVLNPITNEYFKLPTSRSKGDRVPNYCYGLGFSPTTNQYKLARTHFTH 190

Query: 187 DRNSIVHNYKTEIFAIGTQPEWTSIESPNCSFNGCHGVYSNGGLHWIGQNNLG------- 246
           D       +  +IFA GT  EWT + S     N  HGVY NGGL+W+G   L        
Sbjct: 191 DE------FIVDIFAFGTSCEWTPVGSVPNFLNEYHGVYLNGGLYWVGSQKLPNGGISDY 250

Query: 247 PDVIYRLNMEDEKYEQIPFPNEGGYFPCIGIFNGAVHLTLSMEECEYRVWKMKEDGSWIK 306
            +VIYRL+++DEK+E+I FP +GG  P I ++NG ++LT   E+ +Y  WKM+ED SW K
Sbjct: 251 TEVIYRLDLKDEKFEKISFPLDGGDDPYIAVYNGTLYLTFCCEDFDYHAWKMEEDFSWSK 310

Query: 307 AFNVIVTDINKNILSFSK--STVEQIKICKDGKILCLWAGVELVLYNPTTNKMEKIIDDA 366
            F + + +   + L        ++ IK C+DG ILCL+AG+ L+LY+P+T  +E +    
Sbjct: 311 EFVLALPENVHHSLRHHPIGYYLQLIKFCEDGNILCLYAGILLILYDPSTQTVEIL---- 370

Query: 367 TVRDFSI------YHLDCFNFNALPDILTGK 381
           T +DF I      + ++ F+FN+L +IL GK
Sbjct: 371 TNQDFEIKEAMWVHQIESFSFNSLHNILAGK 382

[Close]

BLAST of CmaCh10G011060.1 vs. NCBI nr
Match: gi|659099669|ref|XP_008450717.1| (PREDICTED: putative F-box only protein 9 [Cucumis melo])

HSP 1 Score: 283.9 bits (725), Expect = 4.3e-73
Identity = 166/393 (42.24%), Postives = 233/393 (59.29%), Query Frame = 1


Query: 7   NKISELVPDVIELIVSKLPSYCLPSCRLVCKTWNNVILSSKHHPSISAASNFFLAHVYSN 66
           NK  EL PD+++ I SK+P + LP+CRLV +TWNN+I S K  PS S    FF A  YS+
Sbjct: 10  NKSYELPPDILQQIFSKIPFFNLPTCRLVSRTWNNLISSCKFDPSTSIYHLFF-ARFYSS 69

Query: 67  SRDRPNSHCFRNLQCLELDPNHVEGVRNVASFNLSRKYFKRSF-ISTINSCNGLLAFVVT 126
                     RNL C+E DP HVEG+  VASF     +   S  I+ INSC+GL++ ++T
Sbjct: 70  RH--------RNLHCVEFDPQHVEGMSIVASFAFHPDFCSASSRITIINSCSGLISLLIT 129

Query: 127 KNTNSWLSPNSVVILNPMTNEYFELPKDEFKGNCFTCF-YGFGFCPKTKQYKVVRSYTVR 186
           K        + V +LNP+TNEYF+ P    KG+    + YG GF PKT QYK+ R++   
Sbjct: 130 KRRRRGQRRDVVCVLNPITNEYFKHPNLRLKGDKVPNYCYGLGFSPKTNQYKLARTH--- 189

Query: 187 DRNSIVHN-YKTEIFAIGTQPEWTSIESPNCSFNGCHGVYSNGGLHWIGQNNLGPD---- 246
                 HN +  +IFA GT  EWT I S     N  HGVY NGGL+W+G     P+    
Sbjct: 190 ----FAHNEFIVDIFAFGTSCEWTPIGSVPNFLNEYHGVYFNGGLYWVGSQKQLPNGGLS 249

Query: 247 ----VIYRLNMEDEKYEQIPFPNEGGYFPCIGIFNGAVHLTLSMEECEYRVWKMKEDGSW 306
               V+YRL++ DEK+++I  P  GG  P +G++NG ++LTL  E+ +Y VWKMKED SW
Sbjct: 250 DYTGVVYRLDLNDEKFKKISIP-FGGDEPYVGVYNGTLYLTLCCEDFDYHVWKMKEDFSW 309

Query: 307 IKAFNVIVTDINKNIL-SFSKS-----TVEQIKICKDGKILCLWAGVELVLYNPTTNKME 366
            K F   V  + +NIL S  +       ++ +K C+DG ILCL AG+ L++Y+P T +ME
Sbjct: 310 SKEF---VLALPENILHSLHRHHPIGYYLQLVKFCEDGSILCLCAGILLIVYDPKTQQME 369

Query: 367 KIID-DATVRDFSIYH-LDCFNFNALPDILTGK 381
            + D D  +++   +H ++ F+FN+L + LTGK
Sbjct: 370 ILTDQDFEIKEGMWFHQIESFSFNSLHNTLTGK 382

[Close]

BLAST of CmaCh10G011060.1 vs. NCBI nr
Match: gi|659078870|ref|XP_008439950.1| (PREDICTED: putative F-box protein At3g21120 [Cucumis melo])

HSP 1 Score: 256.1 bits (653), Expect = 9.5e-65
Identity = 158/394 (40.10%), Postives = 230/394 (58.38%), Query Frame = 1


Query: 10  SELVPD-VIELIVSKLPSYCLPSCRLVCKTWNNVILSSKHHPSISAASNFFLAHVYSNSR 69
           SE  PD +I++I+SK+P + L SCRLVCK+WNN++L+ K  PS+      F++  Y    
Sbjct: 15  SEFPPDNIIQVILSKVPLFNLTSCRLVCKSWNNLVLTCKFDPSL------FISLAY---- 74

Query: 70  DRPNSHCFRNLQCLELDPNHVEGVRNVASFNLSRKY-FKRSFISTINSCNGLLAFVVTKN 129
           D P+    R L C++ DP + EG+ +V SF+   K+    S IS IN+CNGLL+ +++K 
Sbjct: 75  DCPS----RTLYCVDFDPMYSEGMNSVGSFSFHPKFSTSSSSISIINACNGLLSLLISKR 134

Query: 130 TNSWLSPNSVV----ILNPMTNEYFELPKDEFKGNCF---TCFYGFGFCPKTKQYKVVRS 189
                 P SV     ILNPMTNEYF+ P ++ K +C       YG GF PK KQYK+ R+
Sbjct: 135 -----KPGSVSYVLGILNPMTNEYFKFPAEKSKSHCCCGRLYSYGLGFNPKKKQYKIART 194

Query: 190 YTVRDRNSIVHNYKTEIFAIGT-QPEWTSIESPNCSFNGCHGVYSNGGLHWIGQ----NN 249
               D ++ +     EIFA G+    WTS+          HGVY NGGL+W+      ++
Sbjct: 195 SFRPDESTTL----VEIFAFGSIYQVWTSVGFLPSLVVEDHGVYFNGGLYWVANQPDPHD 254

Query: 250 LGPDVIYRLNMEDEKYEQIPFPNE-GGYFPCIGIFNGAVHLTLSMEECEYRVWKMKEDGS 309
                IYRL++E+E  E+I  P   GG+F   G+F+G ++LT+S    +Y+VWKMK++ S
Sbjct: 255 SSISTIYRLDIENENLEKISCPQHLGGHF-FFGVFDGTLYLTVSKNN-KYQVWKMKDNFS 314

Query: 310 WIKAFNVIVTDINKNIL-------SFSKSTVEQIKICKDGKILCLWAGVELVLYNPTTNK 369
           WIKAF   V    +N+         +  S ++ IK C+DGKILCL AG+ L+LY+P T  
Sbjct: 315 WIKAF---VISSPRNLCHPDHPHQPWGVSQLDPIKACEDGKILCLLAGLHLILYDPKTKS 374

Query: 370 MEKIIDDA--TVRDFSIYHLDCFNFNALPDILTG 380
            E + D +    +   ++H+D FNFN+LP+IL G
Sbjct: 375 AEILTDQSVKVEKHLHVHHIDSFNFNSLPNILAG 380

[Close]

BLAST of CmaCh10G011060.1 vs. NCBI nr
Match: gi|449433922|ref|XP_004134745.1| (PREDICTED: F-box protein At3g07870-like [Cucumis sativus])

HSP 1 Score: 255.8 bits (652), Expect = 1.2e-64
Identity = 157/390 (40.26%), Postives = 227/390 (58.21%), Query Frame = 1


Query: 10  SELVPD-VIELIVSKLPSYCLPSCRLVCKTWNNVILSSKHHPSISAASNFFLAHVYSNSR 69
           SE  PD +I++I+SK+P + L SCRLVCK+WNN+IL+ K  PS+      FL+  Y    
Sbjct: 15  SEFPPDNIIQVILSKVPLFNLTSCRLVCKSWNNLILTCKFDPSL------FLSFAY---- 74

Query: 70  DRPNSHCFRNLQCLELDPNHVEGVRNVASFNLSRKY-FKRSFISTINSCNGLLAFVVTKN 129
           D P+    R L C++ DP + EG+ ++ SF    K+    S IS IN+CNGLL+ +++K 
Sbjct: 75  DCPS----RTLYCVDFDPMYFEGMNSIGSFTFHPKFSTSDSSISIINACNGLLSLLISKR 134

Query: 130 TNSWLSPNSVVILNPMTNEYFELPKDEFKGNCF---TCFYGFGFCPKTKQYKVVRSYTVR 189
               +S   + ILNPMTNEYF+ P ++ K +C       YG GF PKTKQYK+ R+    
Sbjct: 135 KLGSVS-YVLGILNPMTNEYFKFPAEKSKSHCCCGRLYSYGLGFNPKTKQYKIARTSFRP 194

Query: 190 DRNSIVHNYKTEIFAIG-TQPEWTSIESPNCSFNGCHGVYSNGGLHWIGQ----NNLGPD 249
           D ++ +     EIF  G T   WT +          HGVY  GGL+W+      ++    
Sbjct: 195 DESTTL----VEIFTFGSTHQVWTPVGFLPSLVVEDHGVYFKGGLYWVANQPDPHDSSIS 254

Query: 250 VIYRLNMEDEKYEQIPFPNE-GGYFPCIGIFNGAVHLTLSMEECEYRVWKMKEDGSWIKA 309
            IYRL++E+EK E+I  P   GG+F   G+F+G ++LT+S    +Y+VWKMK++ SWIKA
Sbjct: 255 AIYRLDLENEKLEKISCPQYIGGHF-FFGVFDGTLYLTVSKNN-KYQVWKMKDNFSWIKA 314

Query: 310 FNVIVTDINKNIL-------SFSKSTVEQIKICKDGKILCLWAGVELVLYNPTTNKMEKI 369
           F   V    +N+         +  S ++ IK C+DGKILCL AG+ L+LY+P T   E +
Sbjct: 315 F---VISRPRNLCHPDHPHQPWGVSQLDPIKACEDGKILCLLAGLHLILYDPKTKSAEIL 374

Query: 370 IDDA--TVRDFSIYHLDCFNFNALPDILTG 380
            D +    +   ++H+D FNFN+LP IL G
Sbjct: 375 TDQSVKVEKHLHVHHIDAFNFNSLPSILAG 380

[Close]

BLAST of CmaCh10G011060.1 vs. NCBI nr
Match: gi|659066492|ref|XP_008447090.1| (PREDICTED: putative F-box protein At3g52320 [Cucumis melo])

HSP 1 Score: 185.3 bits (469), Expect = 2.1e-43
Identity = 134/404 (33.17%), Postives = 195/404 (48.27%), Query Frame = 1


Query: 6   GNKI--SELVPDVI-ELIVSKLPSYCLPSCRLVCKTWNNVILSSKHHPSISAASNFFLAH 65
           GN I  SEL  D++ ++++   P   L +CRLV K WN  I S K        SN F+  
Sbjct: 5   GNNIIDSELPSDILLQILLLLQPFSKLFTCRLVSKNWNKCISSFKFD------SNLFITQ 64

Query: 66  VYSNSRDRPNSHCFRNLQCLELDPNHVEGVRNVASFNLSRKYFKRSFISTINSCNGLLAF 125
           +   SR R  S     L C++L+PN  EGV  V SF L   +   S    +N CNGLL  
Sbjct: 65  I---SRCRRRSR--NRLHCVDLNPNRSEGVNLVGSFKLHPSWSSSS-TGIVNICNGLLCI 124

Query: 126 VVTKNTNSWLSPNSVVILNPMTNEYFELP-KDEFKGNCFTCFYGFGFCPKTKQYKVVRSY 185
                    L+   V ILNPMTNEY ELP + E++ +     YG G+ PKTKQYKV R  
Sbjct: 125 ---------LNGKRVAILNPMTNEYMELPSRTEYQSSV----YGLGYSPKTKQYKVARHS 184

Query: 186 TVRDRNSIVHNYKTEIFAIGT------------QPEWTSIESPNCSFN-GCHGVYSNGGL 245
              D   +      EI A  T            Q +W  + S + ++    HG Y NG +
Sbjct: 185 FKNDELFV------EILAFDTSLADQDGNQNEVQSQWRHVVSISTTYKMHRHGTYFNGAI 244

Query: 246 HWIGQNNLGPD------VIYRLNMEDEKYEQIPFPNEGG---YFPCIGIFNGAVHLT-LS 305
           +W+G+            V++RLN+ +EK+E++  P  G    +    G+FNG ++L+   
Sbjct: 245 YWVGEGERSDSSAKNVYVLWRLNVTNEKFEELWLPEIGSIWKHTSYCGVFNGKLYLSHYV 304

Query: 306 MEECEYRVWKMKEDGSWIKAFNVIVTDINKNILSFSKSTVEQIKICKDGKILCLWAGVEL 365
             +  Y V  M   G W   F + +    K       +  + IK  K GKILCL+    L
Sbjct: 305 TADSMYHVLMMNGKGLWETPFFISIPRFYKGSTRLESNHFQLIKPWKKGKILCLFYSFLL 364

Query: 366 VLYNPTTNKMEKI--IDDATVRDFSIYHLDCFNFNALPDILTGK 381
           VL++  + K+EK+  +++   + F I H+D  +F +LP+IL GK
Sbjct: 365 VLFDTKSGKLEKLDYVEEEVKKSFRICHMDSIHFGSLPNILAGK 377

The following BLAST results are available for this feature:

BLAST of CmaCh10G011060.1 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of CmaCh10G011060.1 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0M1M5_CUCSA	5.4e-75	41.94	Uncharacterized protein OS=Cucumis sativus GN=Csa_1G572960 PE=4 SV=1	[more]
A0A0A0KJY9_CUCSA	8.6e-65	40.26	Uncharacterized protein OS=Cucumis sativus GN=Csa_6G515480 PE=4 SV=1	[more]
A0A0A0KSJ2_CUCSA	2.5e-35	31.57	Uncharacterized protein OS=Cucumis sativus GN=Csa_5G643290 PE=4 SV=1	[more]
A0A0A0LSE0_CUCSA	5.7e-32	31.74	Uncharacterized protein OS=Cucumis sativus GN=Csa_1G011590 PE=4 SV=1	[more]
A0A0A0LPC6_CUCSA	2.2e-31	28.47	Uncharacterized protein OS=Cucumis sativus GN=Csa_1G014420 PE=4 SV=1	[more]

BLAST of CmaCh10G011060.1 vs. TAIR10


Match Name	E-value	Identity	Description

BLAST of CmaCh10G011060.1 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|449436028\|ref\|XP_004135796.1\|	7.8e-75	41.94	PREDICTED: putative F-box protein At1g46984 [Cucumis sativus]	[more]
gi\|659099669\|ref\|XP_008450717.1\|	4.3e-73	42.24	PREDICTED: putative F-box only protein 9 [Cucumis melo]	[more]
gi\|659078870\|ref\|XP_008439950.1\|	9.5e-65	40.10	PREDICTED: putative F-box protein At3g21120 [Cucumis melo]	[more]
gi\|449433922\|ref\|XP_004134745.1\|	1.2e-64	40.26	PREDICTED: F-box protein At3g07870-like [Cucumis sativus]	[more]
gi\|659066492\|ref\|XP_008447090.1\|	2.1e-43	33.17	PREDICTED: putative F-box protein At3g52320 [Cucumis melo]	[more]

Annotated Terms

The following terms have been associated with this mRNA:

Vocabulary: **INTERPRO**
Term	Definition
IPR001810	F-box_dom
IPR011043	Gal_Oxase/kelch_b-propeller
IPR017451	F-box-assoc_interact_dom

Vocabulary: **Molecular Function**
Term	Definition
GO:0005515	protein binding

GO Annotation

GO Assignments

This mRNA is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0005515	protein binding

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
CmaCh10G011060	CmaCh10G011060	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
CmaCh10G011060.1	CmaCh10G011060.1-protein	polypeptide

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
CmaCh10G011060.1.exon.1	CmaCh10G011060.1.exon.1	exon
CmaCh10G011060.1.exon.2	CmaCh10G011060.1.exon.2	exon

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
CmaCh10G011060.1.CDS.1	CmaCh10G011060.1.CDS.1	CDS
CmaCh10G011060.1.CDS.2	CmaCh10G011060.1.CDS.2	CDS

InterPro

Analysis Name: InterPro Annotations of Cucurbita maxima
Date Performed: 2017-05-20


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR001810	F-box domain	PFAM	PF00646	F-box	coord: 8..52 score: 4.
IPR001810	F-box domain	SMART	SM00256	fbox_2	coord: 12..52 score: 1.
IPR001810	F-box domain	unknown	SSF81383	F-box domain	coord: 8..48 score: 3.1
IPR011043	Galactose oxidase/kelch, beta-propeller	unknown	SSF50965	Galactose oxidase, central domain	coord: 89..351 score: 4.4
IPR017451	F-box associated interaction domain	TIGRFAMs	TIGR01640	TIGR01640	coord: 114..308 score: 1.2
None	No IPR available	PANTHER	PTHR31790	FAMILY NOT NAMED	coord: 1..352 score: 1.3