CmaCh10G003970.1 (mRNA) Cucurbita maxima (Rimu) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CmaCh10G003970.1
Type	mRNA
Organism	Cucurbita maxima (Cucurbita maxima (Rimu))
Description	Coffea canephora DH200=94 genomic scaffold, scaffold_4
Location	Cma_Chr10 : 1842064 .. 1843347 (+)
Sequence length	1197

Genome Viewer

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

CAAACTTGGCATAATTCCAAACACTGTCTTTTCCTTTTTATTTGTATCTTCCTTCCACAGAATGTTCATGGACGACACGAGCGAATCCAAGCCCCTAACCTCACAGCACAGACAAGATCACCACCATGACGAAGACGGACACGAAAACGAAGCAGAGGAAGCTCTCTCCTTCTCCGATCTTCCACTCGACAAACAAAAATCCGACGGCCACACTCCGGAGAGCTTCCGCAAGAATCCACGTAGGTCCTCCTCCGAGCCTCTGGATCTCTTTGAATTCTTCAGTGCTGGATTTATCACCTCTGAGATTTCTCCGGCCGAGGATTTGATCTTCTGCGGCAGGTTGCTTCCTCTCAATGACCTTTCTCAGCTTACTACTAGTACTAATCGTACAGCCGACAAGAGTTTCTGGAAGGATGAGAGTCGAAAACAGACTGTCTTTCGAAAGCGCTCTGAGTCATTGTCTGGATTGCAGAGCTCTGTTTCTCGATCGAACACTGCGAAGATCAATCTCAAGCGGAATAGCCGATCGCTCGATTACCGCAAGCTCTATCGCCAAGCGAATTCGATTTTCTCACCGACGGCTGAAATCGATCGTAATTGTTCGATCAAGGCCGGATTGAAGCCTGATCCACTGAACAAAAAGGCTTCGTCAAAGCCGCGGTGGTACTTGCTAATGTTCGGAATGGTGAAGTTTCCAGCGGAGATGGACCTCAGCGACATTAAGAGCAGACAAGTCCGCCGAAGTTCGTCGGCACTCTTTCCGGCGAGCGAGAGTAAAGGTAAATATCACTGCAATAATCGAAGCTCCGGCGAAGCGACTTGGAGGATCCTTAGGGCGCTTAGCTGCAAGAACTACGCTAGTGTAGATGTAACGGCGTCGTTAACTGCCTAAGGTACGTTTCACGTGGATAGCACGTGACTAGCGGTTACATTCCCGTTTCGTACTATATTGCCCCCCATTGATGCTGTGACATTCCAGGACCACGAGAAGGTCAGTATGGGAAATTGAAATTAAAATGAAAAATATCATACGCTTCACGTCCAAGGGAAGGGTAGTGTACAGTGGCGGAGCGTGGGCGATGATGGTGCGTTCTCTTTGCAATCTTTATTTTTATTTTATGTTTATTTTGAAAAAAAAAAAAAAAAAATGGTTTGAGATGAATGAGATTCACGGGAATCATATTTATATTTATATTTATATTTATTAGAATTCTGTGAAATATTCTTTTAAAATCAATATTTTCCTCATAGAAGTTTGCGTTTTCTTAGTAAATGCACTTCACC

mRNA sequence

CAAACTTGGCATAATTCCAAACACTGTCTTTTCCTTTTTATTTGTATCTTCCTTCCACAGAATGTTCATGGACGACACGAGCGAATCCAAGCCCCTAACCTCACAGCACAGACAAGATCACCACCATGACGAAGACGGACACGAAAACGAAGCAGAGGAAGCTCTCTCCTTCTCCGATCTTCCACTCGACAAACAAAAATCCGACGGCCACACTCCGGAGAGCTTCCGCAAGAATCCACGTAGGTCCTCCTCCGAGCCTCTGGATCTCTTTGAATTCTTCAGTGCTGGATTTATCACCTCTGAGATTTCTCCGGCCGAGGATTTGATCTTCTGCGGCAGGTTGCTTCCTCTCAATGACCTTTCTCAGCTTACTACTAGTACTAATCGTACAGCCGACAAGAGTTTCTGGAAGGATGAGAGTCGAAAACAGACTGTCTTTCGAAAGCGCTCTGAGTCATTGTCTGGATTGCAGAGCTCTGTTTCTCGATCGAACACTGCGAAGATCAATCTCAAGCGGAATAGCCGATCGCTCGATTACCGCAAGCTCTATCGCCAAGCGAATTCGATTTTCTCACCGACGGCTGAAATCGATCGTAATTGTTCGATCAAGGCCGGATTGAAGCCTGATCCACTGAACAAAAAGGCTTCGTCAAAGCCGCGGTGGTACTTGCTAATGTTCGGAATGGTGAAGTTTCCAGCGGAGATGGACCTCAGCGACATTAAGAGCAGACAAGTCCGCCGAAGTTCGTCGGCACTCTTTCCGGCGAGCGAGAGTAAAGGTAAATATCACTGCAATAATCGAAGCTCCGGCGAAGCGACTTGGAGGATCCTTAGGGCGCTTAGCTGCAAGAACTACGCTAGTGTAGATGTAACGGCGTCGTTAACTGCCTAAGACCACGAGAAGGTCAGTATGGGAAATTGAAATTAAAATGAAAAATATCATACGCTTCACGTCCAAGGGAAGGGTAGTGTACAGTGGCGGAGCGTGGGCGATGATGGTGCGTTCTCTTTGCAATCTTTATTTTTATTTTATGTTTATTTTGAAAAAAAAAAAAAAAAAATGGTTTGAGATGAATGAGATTCACGGGAATCATATTTATATTTATATTTATATTTATTAGAATTCTGTGAAATATTCTTTTAAAATCAATATTTTCCTCATAGAAGTTTGCGTTTTCTTAGTAAATGCACTTCACC

Coding sequence (CDS)

ATGTTCATGGACGACACGAGCGAATCCAAGCCCCTAACCTCACAGCACAGACAAGATCACCACCATGACGAAGACGGACACGAAAACGAAGCAGAGGAAGCTCTCTCCTTCTCCGATCTTCCACTCGACAAACAAAAATCCGACGGCCACACTCCGGAGAGCTTCCGCAAGAATCCACGTAGGTCCTCCTCCGAGCCTCTGGATCTCTTTGAATTCTTCAGTGCTGGATTTATCACCTCTGAGATTTCTCCGGCCGAGGATTTGATCTTCTGCGGCAGGTTGCTTCCTCTCAATGACCTTTCTCAGCTTACTACTAGTACTAATCGTACAGCCGACAAGAGTTTCTGGAAGGATGAGAGTCGAAAACAGACTGTCTTTCGAAAGCGCTCTGAGTCATTGTCTGGATTGCAGAGCTCTGTTTCTCGATCGAACACTGCGAAGATCAATCTCAAGCGGAATAGCCGATCGCTCGATTACCGCAAGCTCTATCGCCAAGCGAATTCGATTTTCTCACCGACGGCTGAAATCGATCGTAATTGTTCGATCAAGGCCGGATTGAAGCCTGATCCACTGAACAAAAAGGCTTCGTCAAAGCCGCGGTGGTACTTGCTAATGTTCGGAATGGTGAAGTTTCCAGCGGAGATGGACCTCAGCGACATTAAGAGCAGACAAGTCCGCCGAAGTTCGTCGGCACTCTTTCCGGCGAGCGAGAGTAAAGGTAAATATCACTGCAATAATCGAAGCTCCGGCGAAGCGACTTGGAGGATCCTTAGGGCGCTTAGCTGCAAGAACTACGCTAGTGTAGATGTAACGGCGTCGTTAACTGCCTAA

Protein sequence

MFMDDTSESKPLTSQHRQDHHHDEDGHENEAEEALSFSDLPLDKQKSDGHTPESFRKNPRRSSSEPLDLFEFFSAGFITSEISPAEDLIFCGRLLPLNDLSQLTTSTNRTADKSFWKDESRKQTVFRKRSESLSGLQSSVSRSNTAKINLKRNSRSLDYRKLYRQANSIFSPTAEIDRNCSIKAGLKPDPLNKKASSKPRWYLLMFGMVKFPAEMDLSDIKSRQVRRSSSALFPASESKGKYHCNNRSSGEATWRILRALSCKNYASVDVTASLTA

Homology

[Close]

BLAST of CmaCh10G003970.1 vs. TrEMBL
Match: A0A0A0LU50_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_1G423130 PE=4 SV=1)

HSP 1 Score: 402.5 bits (1033), Expect = 4.1e-109
Identity = 220/276 (79.71%), Postives = 239/276 (86.59%), Query Frame = 1


Query: 3   MDDTSESKPLTSQHRQDHHHDEDGHENEAEEALSFSDLPLDKQKSDGHT-PESFRKNPRR 62
           MDDTSES PLTS+  Q   H++D      +E+LSFSDLP+D++ SD HT P+SFRKN RR
Sbjct: 1   MDDTSESNPLTSKRNQ---HEDDNDFESDDESLSFSDLPMDRENSDAHTHPDSFRKNSRR 60

Query: 63  SSSEPLDLFEFFSAGFITSEISPAEDLIFCGRLLPLNDLSQLTTSTNRTADKSFWKDE-S 122
           SSSEPLDLFEFF+AG ITSEISPAEDLIFCGRLLPLN+      ST  TADKS WK+E S
Sbjct: 61  SSSEPLDLFEFFTAGLITSEISPAEDLIFCGRLLPLNN----DHSTRITADKSSWKEEIS 120

Query: 123 RKQTVFRKRSESLSGLQSSVSRSNTAKINLKRNSRSLDYRKLYRQANSIFSPTAEIDRNC 182
           RKQTVFRKRSESLSGLQSSVSRSN+AK NLKRNSRSLDYR+LYRQ+NSIFSPTAEIDRNC
Sbjct: 121 RKQTVFRKRSESLSGLQSSVSRSNSAKFNLKRNSRSLDYRRLYRQSNSIFSPTAEIDRNC 180

Query: 183 SIKAGLKPDPLNKKASSKPRWYLLMFGMVKFPAEMDLSDIKSRQVRRSSSALFPASESKG 242
           SIK GLKPD LNK+ SSKPRWYLLMFGMVKFPAEM+LSDIKSRQVRRSSS LFP +ESK 
Sbjct: 181 SIKTGLKPDSLNKRTSSKPRWYLLMFGMVKFPAEMELSDIKSRQVRRSSSTLFPTNESKS 240

Query: 243 KYHCNNRSSGEATWRILRALSCKNYASVDVTASLTA 277
           KYHC   SSGEATWRILRALSCKN+ASVDVTASLTA
Sbjct: 241 KYHC-GWSSGEATWRILRALSCKNHASVDVTASLTA 268

[Close]

BLAST of CmaCh10G003970.1 vs. TrEMBL
Match: F6GXG9_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VIT_11s0052g00900 PE=4 SV=1)

HSP 1 Score: 200.7 bits (509), Expect = 2.4e-48
Identity = 128/246 (52.03%), Postives = 165/246 (67.07%), Query Frame = 1


Query: 28  ENEAEEALSFSDLPLDKQKSDGHTPESFRKNPRRSSSEPLDLFEFFSAGFITSEISPAED 87
           E EAEEALS  DLP+   ++ G   + F    RRS+SEP +LFEFFS   ++ E+SPA++
Sbjct: 14  EEEAEEALSLCDLPISASETSG---KDFSPCGRRSTSEPPELFEFFSN--LSYEMSPADE 73

Query: 88  LIFCGRLLPLNDLSQLTTSTNRTADKSFWKDESRKQTVFRKRSESLSGLQSSVSRSNTAK 147
           +IFCG+L+P  D        N+       +   +K +  R+RSESLS LQ+S  RSN+AK
Sbjct: 74  IIFCGKLVPFKDAQTREIQDNK-------QGSVQKASTLRRRSESLSELQTS--RSNSAK 133

Query: 148 INLKRNSRSLDYRKLYRQANSIFSPTAEIDRNCSIKAGLKPDPLNKKASSKPRWYLLMFG 207
             L RNSRSLDYRKLYR ++S  SP  E+DRN S K+  + D ++ +   K RWYLLMFG
Sbjct: 134 SRLVRNSRSLDYRKLYRSSSSQTSPGPEMDRNSSDKSSGRSD-ISVRKVPKSRWYLLMFG 193

Query: 208 MVKFPAEMDLSDIKSRQVRRSSSALFPASESKGKYHCNNRSSGEATWRILRALSCKNYAS 267
           +VKFP EM+L DIKSRQVRRS S LFP+ ++  K     RSSG+ +W ILRALSCK+ AS
Sbjct: 194 LVKFPPEMELRDIKSRQVRRSPSTLFPSLDASVKVPV-KRSSGKCSWGILRALSCKD-AS 242

Query: 268 VDVTAS 274
           V VTAS
Sbjct: 254 VAVTAS 242

[Close]

BLAST of CmaCh10G003970.1 vs. TrEMBL
Match: B9N2Z7_POPTR (Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0006s18380g PE=4 SV=1)

HSP 1 Score: 176.8 bits (447), Expect = 3.7e-41
Identity = 131/270 (48.52%), Postives = 170/270 (62.96%), Query Frame = 1


Query: 13  TSQHR---QDHHHDED-GHENEAEEALSFSDLPLDKQKSDGHTPESFRKNPRRSSSEPLD 72
           T+ HR   Q+H  D D   E E EEALS  D PL  Q  D  +PE    N  R SSEP +
Sbjct: 5   TNLHRDREQEHDRDRDRDQEEEEEEALSLCDFPL--QGRDKESPEIAAHNSARPSSEPAE 64

Query: 73  LFEFFSAGFITSEISPAEDLIFCGRLLPLNDLSQLTTSTNRTADKSFWKDESRKQTVFRK 132
            FEFFS   ++SE+S AED+IF G+L+P   +    T  N++        E +++  FR+
Sbjct: 65  FFEFFSD--VSSEMSSAEDIIFHGKLVPF--IEPYFTPQNQSK-------EDQQRFSFRR 124

Query: 133 RSESLSGLQSSVSRSNTAKIN--LKRNSRSLDYRKLYRQANSI-FSPTAEIDRNCSIKAG 192
           R +SLS LQSS SRSN+ K N  L RNSRSLDYR L R  +S  FSP  +I+R+ S+K+ 
Sbjct: 125 RCDSLSELQSSASRSNSTKNNIALMRNSRSLDYRNLERFPSSKKFSPELDIERSSSLKS- 184

Query: 193 LKPDPLNKKASSKPRWYLLMFGMVKFPAEMDLSDIKSRQVRRSSS-ALFPASESKGKYHC 252
           +      K+ +SKPRWYLLMFG+VK P EMDLSDIKSRQVRR+SS  +FP  ++ GK   
Sbjct: 185 IHARGEVKRTTSKPRWYLLMFGVVKPPTEMDLSDIKSRQVRRNSSMTMFPPVDTDGKKAP 244

Query: 253 NNRSS-GEATWRILRALSCKNYASVDVTAS 274
            ++SS  + + R+LR LSCK+ ASV V  S
Sbjct: 245 VSQSSISKGSCRLLRVLSCKDPASVAVATS 260

[Close]

BLAST of CmaCh10G003970.1 vs. TrEMBL
Match: A0A061GQN7_THECC (Uncharacterized protein OS=Theobroma cacao GN=TCM_039106 PE=4 SV=1)

HSP 1 Score: 176.0 bits (445), Expect = 6.2e-41
Identity = 125/257 (48.64%), Postives = 162/257 (63.04%), Query Frame = 1


Query: 24  EDGHENEAEEALSFSDLPLDKQKSDGHTPESFRKNP---RRSSSEPL-DLFEFFSAGFIT 83
           +D    EAEEALS  DL LD   ++G++     K P   RRSSSE   + FEF S   ++
Sbjct: 58  QDDPAEEAEEALSLCDLALDLD-ANGNSDNDLGKLPAQSRRSSSEAAPEFFEFLSD--VS 117

Query: 84  SEISPAEDLIFCGRLLPLNDLSQLTTSTNRTADKSFWKDESRKQTVFRKRSESLSGLQSS 143
           S++ PA+D+IFCG+L+PL    Q   S  R   K +  DE RK  V RKRSESLS L+SS
Sbjct: 118 SDMCPADDIIFCGKLIPLK---QQPVSFQR--QKGYPSDEKRKNHVLRKRSESLSELRSS 177

Query: 144 -VSRSNTAK-INLKRNSRSLDYRKLYRQANSIFSPTAEIDRNCSIKAGLKPDPLNKKASS 203
            ++RS++ K   L RNSRSLDY+KL+R          E++RN S ++  K     KKA  
Sbjct: 178 SMTRSSSTKNTTLLRNSRSLDYQKLHRY---------EMERNPSTRSAGKTHVSPKKAV- 237

Query: 204 KPRWYLLMFGMVKFPAEMDLSDIKSRQVRRSSSALFPASESKGKYHCNNRSSGE-ATWRI 263
           KPRWY+ MFGMVKFP EM+L DIKSRQ  RS S +FP  E  GK    NR SG+ ++W +
Sbjct: 238 KPRWYVFMFGMVKFPPEMELQDIKSRQFGRSPSVMFPPMEDGGKKFAGNRCSGKGSSWSL 296

Query: 264 LRALSCKNYASVDVTAS 274
           L+ALSC+++ SV VTAS
Sbjct: 298 LKALSCRDHTSVAVTAS 296

[Close]

BLAST of CmaCh10G003970.1 vs. TrEMBL
Match: V4UQM0_9ROSI (Uncharacterized protein OS=Citrus clementina GN=CICLE_v10010819mg PE=4 SV=1)

HSP 1 Score: 175.3 bits (443), Expect = 1.1e-40
Identity = 113/268 (42.16%), Postives = 165/268 (61.57%), Query Frame = 1


Query: 28  ENEAEEALSFSDLPLDKQKSDGH-------TPESFRKNPRRSSSEPLDLFEFFSAGFITS 87
           E EAEEALS  DLPLD++ +  +       T +S R  PR SS+E  D F  F +G  +S
Sbjct: 16  EEEAEEALSLCDLPLDEEDNAANNNSQEIATSQSQRHTPRSSSTEAQDQFFEFLSGDFSS 75

Query: 88  EISPAEDLIFCGRLLPLNDLSQLTTSTNRTADKSFWKDESRKQTVFRKRSESLSGLQS-- 147
           E+ PAED+IFCG+L+        +++           +E++ + +  +RSESLS L S  
Sbjct: 76  EMCPAEDIIFCGKLI--------SSTPQPDPPSRVLSNEAKTKGILHRRSESLSDLDSYA 135

Query: 148 SVSRSNTAKINLK--RNSRSLDYRKLYRQANSIFSPTAEIDRNCSIKAGLKPDPLNKKAS 207
           +  RSN+ K N +  R SRSLDY++L R  +S  S   +I+R+ S+K+  K D  NK+AS
Sbjct: 136 TTPRSNSTKNNYQFLRISRSLDYQRLRRFGSSKTSSDLDIERSASVKSVGKSDN-NKRAS 195

Query: 208 SKPRWYLLMFGMVKFPAEMDLSDIKSRQVRRSSSALFPASESKGKYHCN----------N 267
           SKP+WY  + G+VKFP EMD+ DI+SRQ RRSSS +FP+ +++G +  N          +
Sbjct: 196 SKPKWYFPLLGIVKFPPEMDIRDIRSRQFRRSSSVMFPSLDAEGNFPANRSTGSKSSSSS 255

Query: 268 RSSGEATWRILRALSCKNYASVDVTASL 275
            SS  ++W+ ++ALSC ++ASV VTASL
Sbjct: 256 SSSSSSSWKFIKALSCSDHASVAVTASL 274

[Close]

BLAST of CmaCh10G003970.1 vs. TAIR10
Match: AT4G30230.1 (AT4G30230.1 unknown protein)

HSP 1 Score: 124.0 bits (310), Expect = 1.4e-28
Identity = 93/254 (36.61%), Postives = 133/254 (52.36%), Query Frame = 1


Query: 28  ENEAEEALSFSDLPLDKQKSDGHTPESFRKNPRRSSSEPLDLFEFFSAGFITSEISPAED 87
           E E E+ALS  DLPL K K+   T     K P        +LFEF ++   + +++PAE+
Sbjct: 24  EEEKEDALSLRDLPL-KAKNPNPTTTEDHKEPST------ELFEFLTSS--SYDVAPAEN 83

Query: 88  LIFCGRLLPLNDLSQLTTSTNRTADKSFWKDESRKQTVFRKRSESLSGLQS-SVSRSNTA 147
           +IF G+L+PLN               +F+          R RSESLS +Q   ++R  + 
Sbjct: 84  IIFGGKLIPLN------------YQNAFFSPPEHISRRIRSRSESLSAIQGHKLNRPGSC 143

Query: 148 KINLKRN------SRSLDYRKLYRQANSIFSPTAEIDRNCSIKAGLKPDPLNKKA--SSK 207
            +  + N      SRSLDYRKL R   ++ SP    + + S K   KP+  +  +  S +
Sbjct: 144 TVARRDNAGPMRASRSLDYRKLSRGLTTVHSPP---ENSSSTKNTGKPETTSSGSVKSVR 203

Query: 208 PRWYLLMFGMVKFPAEMDLSDIKSRQVRRSSSALFPASESKGKYHCNNRSSGEATWRILR 267
           PRWY++MFGMVKFP E++L DIKSRQ+RR+   +   S +  +   +   S   +WR L 
Sbjct: 204 PRWYVIMFGMVKFPPEIELKDIKSRQIRRNIPPVMFPSPANRRARGSRSPSPSPSWRFLN 253

Query: 268 ALSCKNYASVDVTA 273
           ALSCK   SV  TA
Sbjct: 264 ALSCKKPTSVAATA 253

[Close]

BLAST of CmaCh10G003970.1 vs. NCBI nr
Match: gi|659107303|ref|XP_008453606.1| (PREDICTED: uncharacterized protein LOC103494265 [Cucumis melo])

HSP 1 Score: 418.3 bits (1074), Expect = 1.0e-113
Identity = 228/276 (82.61%), Postives = 247/276 (89.49%), Query Frame = 1


Query: 3   MDDTSESKPLTSQHRQDHHHDEDGHENEAEEALSFSDLPLDKQKSDGHT-PESFRKNPRR 62
           MDDTSES PLTS+  Q  H D+D  + E++E+LSFSDLP+D++ SD HT P+SFRKNPRR
Sbjct: 1   MDDTSESNPLTSKRNQ--HEDDD--DFESDESLSFSDLPMDRENSDAHTHPDSFRKNPRR 60

Query: 63  SSSEPLDLFEFFSAGFITSEISPAEDLIFCGRLLPLNDLSQLTTSTNRTADKSFWKDE-S 122
           SSSEPLDLFEFFSAGFITSEISPAEDLIFCGRLLPLND      ST  TADKSFWK+E S
Sbjct: 61  SSSEPLDLFEFFSAGFITSEISPAEDLIFCGRLLPLND-----HSTRITADKSFWKEEIS 120

Query: 123 RKQTVFRKRSESLSGLQSSVSRSNTAKINLKRNSRSLDYRKLYRQANSIFSPTAEIDRNC 182
           RKQTVFRKRSESLSGLQSSVSRSN+AK NLKRNSRSLDYR+LYRQANSIFSPTAEIDRNC
Sbjct: 121 RKQTVFRKRSESLSGLQSSVSRSNSAKFNLKRNSRSLDYRRLYRQANSIFSPTAEIDRNC 180

Query: 183 SIKAGLKPDPLNKKASSKPRWYLLMFGMVKFPAEMDLSDIKSRQVRRSSSALFPASESKG 242
           SIK GLKPD LNKK SSKPRWYLLMFGMVKFPAEM+LSDIKSRQVRRSSS LFP++E+K 
Sbjct: 181 SIKTGLKPDSLNKKTSSKPRWYLLMFGMVKFPAEMELSDIKSRQVRRSSSTLFPSNETKS 240

Query: 243 KYHCNNRSSGEATWRILRALSCKNYASVDVTASLTA 277
           K+HC  RSSGEATWRILRALSCKN+ASVDVTASLTA
Sbjct: 241 KFHC-GRSSGEATWRILRALSCKNHASVDVTASLTA 266

[Close]

BLAST of CmaCh10G003970.1 vs. NCBI nr
Match: gi|778660738|ref|XP_011656822.1| (PREDICTED: uncharacterized protein LOC105435774 [Cucumis sativus])

HSP 1 Score: 402.5 bits (1033), Expect = 5.9e-109
Identity = 220/276 (79.71%), Postives = 239/276 (86.59%), Query Frame = 1


Query: 3   MDDTSESKPLTSQHRQDHHHDEDGHENEAEEALSFSDLPLDKQKSDGHT-PESFRKNPRR 62
           MDDTSES PLTS+  Q   H++D      +E+LSFSDLP+D++ SD HT P+SFRKN RR
Sbjct: 1   MDDTSESNPLTSKRNQ---HEDDNDFESDDESLSFSDLPMDRENSDAHTHPDSFRKNSRR 60

Query: 63  SSSEPLDLFEFFSAGFITSEISPAEDLIFCGRLLPLNDLSQLTTSTNRTADKSFWKDE-S 122
           SSSEPLDLFEFF+AG ITSEISPAEDLIFCGRLLPLN+      ST  TADKS WK+E S
Sbjct: 61  SSSEPLDLFEFFTAGLITSEISPAEDLIFCGRLLPLNN----DHSTRITADKSSWKEEIS 120

Query: 123 RKQTVFRKRSESLSGLQSSVSRSNTAKINLKRNSRSLDYRKLYRQANSIFSPTAEIDRNC 182
           RKQTVFRKRSESLSGLQSSVSRSN+AK NLKRNSRSLDYR+LYRQ+NSIFSPTAEIDRNC
Sbjct: 121 RKQTVFRKRSESLSGLQSSVSRSNSAKFNLKRNSRSLDYRRLYRQSNSIFSPTAEIDRNC 180

Query: 183 SIKAGLKPDPLNKKASSKPRWYLLMFGMVKFPAEMDLSDIKSRQVRRSSSALFPASESKG 242
           SIK GLKPD LNK+ SSKPRWYLLMFGMVKFPAEM+LSDIKSRQVRRSSS LFP +ESK 
Sbjct: 181 SIKTGLKPDSLNKRTSSKPRWYLLMFGMVKFPAEMELSDIKSRQVRRSSSTLFPTNESKS 240

Query: 243 KYHCNNRSSGEATWRILRALSCKNYASVDVTASLTA 277
           KYHC   SSGEATWRILRALSCKN+ASVDVTASLTA
Sbjct: 241 KYHC-GWSSGEATWRILRALSCKNHASVDVTASLTA 268

[Close]

BLAST of CmaCh10G003970.1 vs. NCBI nr
Match: gi|731408614|ref|XP_010656920.1| (PREDICTED: uncharacterized protein LOC104880802 [Vitis vinifera])

HSP 1 Score: 200.7 bits (509), Expect = 3.4e-48
Identity = 128/246 (52.03%), Postives = 165/246 (67.07%), Query Frame = 1


Query: 28  ENEAEEALSFSDLPLDKQKSDGHTPESFRKNPRRSSSEPLDLFEFFSAGFITSEISPAED 87
           E EAEEALS  DLP+   ++ G   + F    RRS+SEP +LFEFFS   ++ E+SPA++
Sbjct: 14  EEEAEEALSLCDLPISASETSG---KDFSPCGRRSTSEPPELFEFFSN--LSYEMSPADE 73

Query: 88  LIFCGRLLPLNDLSQLTTSTNRTADKSFWKDESRKQTVFRKRSESLSGLQSSVSRSNTAK 147
           +IFCG+L+P  D        N+       +   +K +  R+RSESLS LQ+S  RSN+AK
Sbjct: 74  IIFCGKLVPFKDAQTREIQDNK-------QGSVQKASTLRRRSESLSELQTS--RSNSAK 133

Query: 148 INLKRNSRSLDYRKLYRQANSIFSPTAEIDRNCSIKAGLKPDPLNKKASSKPRWYLLMFG 207
             L RNSRSLDYRKLYR ++S  SP  E+DRN S K+  + D ++ +   K RWYLLMFG
Sbjct: 134 SRLVRNSRSLDYRKLYRSSSSQTSPGPEMDRNSSDKSSGRSD-ISVRKVPKSRWYLLMFG 193

Query: 208 MVKFPAEMDLSDIKSRQVRRSSSALFPASESKGKYHCNNRSSGEATWRILRALSCKNYAS 267
           +VKFP EM+L DIKSRQVRRS S LFP+ ++  K     RSSG+ +W ILRALSCK+ AS
Sbjct: 194 LVKFPPEMELRDIKSRQVRRSPSTLFPSLDASVKVPV-KRSSGKCSWGILRALSCKD-AS 242

Query: 268 VDVTAS 274
           V VTAS
Sbjct: 254 VAVTAS 242

[Close]

BLAST of CmaCh10G003970.1 vs. NCBI nr
Match: gi|694449901|ref|XP_009350489.1| (PREDICTED: uncharacterized protein LOC103942014 [Pyrus x bretschneideri])

HSP 1 Score: 192.6 bits (488), Expect = 9.2e-46
Identity = 123/255 (48.24%), Postives = 166/255 (65.10%), Query Frame = 1


Query: 21  HHDEDGHENEAEEALSFSDLPLD---KQKSDGHTPESFRKNPRRSSSEPLDLFEFFSAGF 80
           + D+   E +AEEALS SDLPLD   +Q ++ H   S   + RRSS++    FEFFS   
Sbjct: 13  YRDQSEEEEDAEEALSLSDLPLDNIHEQVNEVHNMSSKHLHARRSSAD--QFFEFFSDFS 72

Query: 81  ITSEISPAEDLIFCGRLLPLNDLSQLTTSTNRTADKSFWKDESRKQTVFRKRSESLSGLQ 140
             S +  AED+I CG+L+P  D +     T  T +    KD S     FR+RSESL GLQ
Sbjct: 73  SDSFMCSAEDIIVCGKLIPFKDHANEAPKTTCTNNGYHQKDSS-----FRRRSESLPGLQ 132

Query: 141 SSVSRSNTAKINLK-RNSRSLDYRKLYRQANSIFSPTAEIDRNCSIKAGLKPDPLNKKAS 200
           SSV+RS++ K  +  RNSRSLDY+KL+RQ++ +    AE++RN S K+  K D   KK+ 
Sbjct: 133 SSVARSSSTKNQIMMRNSRSLDYQKLHRQSSMVSPTPAEMERNSSTKSVGKYD---KKSG 192

Query: 201 SKPRWYLLMFGMVKFPAEMDLSDIKSRQVRRSSSALFPASESKGKYHCNNRSSGEATWRI 260
           +KP+WY LMFG+V+FP+EMDLSDIK+RQ+RR+ S     SE+      +NRSSG+ +WR+
Sbjct: 193 NKPKWYFLMFGIVRFPSEMDLSDIKNRQIRRNPSTTLFRSEAS-----DNRSSGKGSWRL 252

Query: 261 LRALSCKNYASVDVT 272
           LRALSCK+ ASV  T
Sbjct: 253 LRALSCKDDASVPAT 252

[Close]

BLAST of CmaCh10G003970.1 vs. NCBI nr
Match: gi|645234191|ref|XP_008223699.1| (PREDICTED: uncharacterized protein LOC103323479 [Prunus mume])

HSP 1 Score: 192.2 bits (487), Expect = 1.2e-45
Identity = 127/259 (49.03%), Postives = 167/259 (64.48%), Query Frame = 1


Query: 19  DHHHDEDGHENE-AEEALSFSDLPLDK---QKSDGHTPESFRKNPRRSSSEPLDLFEFFS 78
           DH H +D  E E AEEALS  DLPLD    Q  + H   S     RRSSS+   LFEFFS
Sbjct: 8   DHPHYQDKSEEEDAEEALSLCDLPLDNTHDQVHEFHDMSSNHLQARRSSSD--QLFEFFS 67

Query: 79  AGFITSEISPAEDLIFCGRLLPLNDLSQLTTSTNRTADKSFWKDESRKQTVFRKRSESLS 138
                S +  AED+I CG+L+P           +   + S       KQ  FR+RSESLS
Sbjct: 68  DISSDSFMCSAEDIIVCGKLIPFKQHMTEVPKAHPNPNDS----HKNKQPTFRRRSESLS 127

Query: 139 GLQSSVSRSNTAKINLK-RNSRSLDYRKLYRQANSIFSPTAEIDRNCSIKAGLKPDPLNK 198
            LQSSV+RS+++K  +  RNSRSLDYRKL RQ++ +     E++RN S+++  K D + K
Sbjct: 128 ELQSSVTRSSSSKNQIMMRNSRSLDYRKLQRQSSMVSPTPGEMERNSSVRSVGKSDKV-K 187

Query: 199 KASSKPRWYLLMFGMVKFPAEMDLSDIKSRQVRRS-SSALFPASESKGKYHCNNRSSGEA 258
              +KPRW+ LMFG+VKFPAEMDLSDIK+RQ+RR+ S+ +FP     GK+  +NRSSG+ 
Sbjct: 188 SGYNKPRWFFLMFGIVKFPAEMDLSDIKNRQIRRNPSTTMFPREVVAGKFP-DNRSSGKG 247

Query: 259 TWRILRALSCKNYASVDVT 272
           +WR+L+ALSCK++ASV VT
Sbjct: 248 SWRLLKALSCKDHASVAVT 258

The following BLAST results are available for this feature:

BLAST of CmaCh10G003970.1 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of CmaCh10G003970.1 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0LU50_CUCSA	4.1e-109	79.71	Uncharacterized protein OS=Cucumis sativus GN=Csa_1G423130 PE=4 SV=1	[more]
F6GXG9_VITVI	2.4e-48	52.03	Putative uncharacterized protein OS=Vitis vinifera GN=VIT_11s0052g00900 PE=4 SV=...	[more]
B9N2Z7_POPTR	3.7e-41	48.52	Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0006s18380g PE=4 SV=1	[more]
A0A061GQN7_THECC	6.2e-41	48.64	Uncharacterized protein OS=Theobroma cacao GN=TCM_039106 PE=4 SV=1	[more]
V4UQM0_9ROSI	1.1e-40	42.16	Uncharacterized protein OS=Citrus clementina GN=CICLE_v10010819mg PE=4 SV=1	[more]

BLAST of CmaCh10G003970.1 vs. TAIR10


Match Name	E-value	Identity	Description
AT4G30230.1	1.4e-28	36.61	unknown protein	[more]

BLAST of CmaCh10G003970.1 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|659107303\|ref\|XP_008453606.1\|	1.0e-113	82.61	PREDICTED: uncharacterized protein LOC103494265 [Cucumis melo]	[more]
gi\|778660738\|ref\|XP_011656822.1\|	5.9e-109	79.71	PREDICTED: uncharacterized protein LOC105435774 [Cucumis sativus]	[more]
gi\|731408614\|ref\|XP_010656920.1\|	3.4e-48	52.03	PREDICTED: uncharacterized protein LOC104880802 [Vitis vinifera]	[more]
gi\|694449901\|ref\|XP_009350489.1\|	9.2e-46	48.24	PREDICTED: uncharacterized protein LOC103942014 [Pyrus x bretschneideri]	[more]
gi\|645234191\|ref\|XP_008223699.1\|	1.2e-45	49.03	PREDICTED: uncharacterized protein LOC103323479 [Prunus mume]	[more]

Annotated Terms

The following terms have been associated with this mRNA:

Vocabulary: **INTERPRO**
Term	Definition

GO Annotation

GO Assignments

This mRNA is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
CmaCh10G003970	CmaCh10G003970	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
CmaCh10G003970.1	CmaCh10G003970.1-protein	polypeptide

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
CmaCh10G003970.1.exon.2	CmaCh10G003970.1.exon.2	exon
CmaCh10G003970.1.exon.1	CmaCh10G003970.1.exon.1	exon

The following five_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
CmaCh10G003970.1.five_prime_UTR.1	CmaCh10G003970.1.five_prime_UTR.1	five_prime_UTR

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
CmaCh10G003970.1.CDS.1	CmaCh10G003970.1.CDS.1	CDS

The following three_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
CmaCh10G003970.1.three_prime_UTR.1	CmaCh10G003970.1.three_prime_UTR.1	three_prime_UTR

InterPro

Analysis Name: InterPro Annotations of Cucurbita maxima
Date Performed: 2017-05-20


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR34130	FAMILY NOT NAMED	coord: 1..273 score: 3.7
None	No IPR available	PANTHER	PTHR34130:SF2	SUBFAMILY NOT NAMED	coord: 1..273 score: 3.7