CmaCh08G002020.1 (mRNA) Cucurbita maxima (Rimu)
The following sequences are available for this feature:
Legend: exonfive_prime_UTRCDS Hold the cursor over a type above to highlight its positions in the sequence below.GATCGTTTCAGTTCTCTTCTGCGTACTTTTATTCCATTTCTCCTCCCTGACAGCCATTGGAGGAGACCACCACCTCCACCTTTTTTCATCAAATTCATCTCCATTTCTCCACGCTCCGCTCCTCCATTTTTTGTTCTACTGCTACAGGCTCATGCCCCTCGCTCACCGTTGCTCATTTCATTTCTCTTCTTCGGACTAGTAAGATTCACGCTTTAATCTTTGATTTCCTGCTTTACTTTACCGGCTTCTTTGATTTATTCTCCATTGAGAATCTCTCTCCTTGTGATTTCTAAATTCAGTCGCCGCCATCTCGTTATATTGTGTTTATTATTCTTTTTCCCATGTTTTTCTGGGCTTTAAGCACAACAATGAACAGGGTCGAAATGGTCTCTATGAGATGGGTTTTGATTTAGATAGGTGACTTGATTGCACTCTATATGGGCCTCATATTGCTTGCAATTGTGAGAAAAAAACAATGGAGATGGAAAGAAATGATTGATGGGTTATGATTTGTTCTGGAAATAACAGTAGTATCGGTTTAGAGAAGCGCACTTATGTAGAATATTTTGATGTCATTTAGATGCAGTTCACTCACAAGCTTGAGATTATCAGTGTGTGTGTGTGTGTGTGTGTGTGTGTGGCCTTAGCCTGGGCCTAATCCTGGGTGCATATCTTAATTGGGTTGCAGCCAACTTCAAAACTCCAAAATCTTGATCTTGTGAGATGAAATTAGGGACAAAGAAGGATTTGTTTTGCTTTTCTTTCTGTAAAAGATTATACAACCTCTTAGGAGTGTTTGGTTAATCCAGAAAATGGTTGTAACCTTTGAGCATGGGGCCATTCTTCATGTCAAAAGTTTGCTTCTGATGAAGTTTTTCCAACTATTAAATGTAGGTCCGGTAGGTTTGTTGCCGCCTTGGGATTGATCAGTATCTAGCGTAGAGTTTACGGACATAAATTGCTAAGTTACAAATAGTTAACCTATTCACATAAGACATGATTTCAACCTAAAAGACGTGAGCGGTAAAACTGTGAGGCTATTACAAATAGTATTCCTTATAAGGGTGTAGAAACTTCTCCTTAGTAGACGTGTTTTAAAACTGTGAGGCTGATGGCAATACGTAACGGGCTAAAGCGGATAATATCTGTTAGCGGTGGGTTTGGACTGTTACATAAAAGTTGTCGTATCAGTAACCTAAGCACATCTAGTTGGTTAAAAGATCTAATAATTTCCTTGAGGTGAATCAAATTCCAATCATACAGTGTACTCTTTAGTGTTGTTTTTTGATACTGTAATTATCTTAGTTTACAGTAAACAATTATGCTAACTCCTTTAATGGGTATATTAGGTTCTTTATCATCCCAGATGGGATCAGCTACTGATGAACAATATGCTAAGTTTGAGGAAAAGGTAAAACGGACTGTCTATGTTGATAATCTCTCCCCCCAAGTGACTGAGCCTGTCTTGAGAACCGCTTTAGATCAGTTTGGGACTGTTGTCAGTGTCCATTTTATTCCAAATTTCACGGAGCCAATTAATAGCTCGCAATGTGCTTTAGTCGAGATGAAGGACTCGAAGGAGGCAAATTCTGTCATCTCTGTGATATCTCAGTTCCCTTTCATGATGTCTGGAATGCCGAGACCGGTGAGGGCATACCCTGCCGAAGTGGAAATGTTCGATGATCGCCCTATAAAGCCTGGTAGGAAGATTAGCTTTGTCTGGTTGGGAAAGGAAGATCCTGACTTTGAAGTGGCAAAGAAAATGAAGTGTCTTACTCAGAGGCATGTTGCTGAAGCTGCATTCTTGCTGAAGGTATGAGTTTCAAAATCCCATGCCCCCCCCCCCCAAAATACATTGTTCCCATCGGTTTAACGTTTATACCATGAAATCAACCCTTTGGTGTGCCGCTCAGGTGTTAAACTGGTGGAGTCAACGAGACATAAAAGACACAAAACTAAAAATTTAGAGGCAACTTTTAAATTATAAAGATGAAATGGACACGATGTTGAAAGTTCAAGGATCTATTAGAAAACTTTTAAAGTAGGACTAAAAGTTGAGGCACGGAACTTGAAATTTAGCATGGTTAAATAGTTCTTAACAAAGGTTCCTCCCATTCTCTTGCAGCAACAGTTGGTGGAAGAGGAGAAGCTTGCAAAGCAGCAGCAAGATGCACTGAAAGGAAACTACAAGAAATATGAGATCCTTGAAGGTGTAATGACTGATGGAACTGCCCGCAGGTTAGCAAGGCGTTATAATATGCGAGTTGCAGATGATTAA GATCGTTTCAGTTCTCTTCTGCGTACTTTTATTCCATTTCTCCTCCCTGACAGCCATTGGAGGAGACCACCACCTCCACCTTTTTTCATCAAATTCATCTCCATTTCTCCACGCTCCGCTCCTCCATTTTTTGTTCTACTGCTACAGGCTCATGCCCCTCGCTCACCGTTGCTCATTTCATTTCTCTTCTTCGGACTAGTTCTTTATCATCCCAGATGGGATCAGCTACTGATGAACAATATGCTAAGTTTGAGGAAAAGGTAAAACGGACTGTCTATGTTGATAATCTCTCCCCCCAAGTGACTGAGCCTGTCTTGAGAACCGCTTTAGATCAGTTTGGGACTGTTGTCAGTGTCCATTTTATTCCAAATTTCACGGAGCCAATTAATAGCTCGCAATGTGCTTTAGTCGAGATGAAGGACTCGAAGGAGGCAAATTCTGTCATCTCTGTGATATCTCAGTTCCCTTTCATGATGTCTGGAATGCCGAGACCGGTGAGGGCATACCCTGCCGAAGTGGAAATGTTCGATGATCGCCCTATAAAGCCTGGTAGGAAGATTAGCTTTGTCTGGTTGGGAAAGGAAGATCCTGACTTTGAAGTGGCAAAGAAAATGAAGTGTCTTACTCAGAGGCATGTTGCTGAAGCTGCATTCTTGCTGAAGGAGAAGCTTGCAAAGCAGCAGCAAGATGCACTGAAAGGAAACTACAAGAAATATGAGATCCTTGAAGGTGTAATGACTGATGGAACTGCCCGCAGGTTAGCAAGGCGTTATAATATGCGAGTTGCAGATGATTAA ATGGGATCAGCTACTGATGAACAATATGCTAAGTTTGAGGAAAAGGTAAAACGGACTGTCTATGTTGATAATCTCTCCCCCCAAGTGACTGAGCCTGTCTTGAGAACCGCTTTAGATCAGTTTGGGACTGTTGTCAGTGTCCATTTTATTCCAAATTTCACGGAGCCAATTAATAGCTCGCAATGTGCTTTAGTCGAGATGAAGGACTCGAAGGAGGCAAATTCTGTCATCTCTGTGATATCTCAGTTCCCTTTCATGATGTCTGGAATGCCGAGACCGGTGAGGGCATACCCTGCCGAAGTGGAAATGTTCGATGATCGCCCTATAAAGCCTGGTAGGAAGATTAGCTTTGTCTGGTTGGGAAAGGAAGATCCTGACTTTGAAGTGGCAAAGAAAATGAAGTGTCTTACTCAGAGGCATGTTGCTGAAGCTGCATTCTTGCTGAAGGAGAAGCTTGCAAAGCAGCAGCAAGATGCACTGAAAGGAAACTACAAGAAATATGAGATCCTTGAAGGTGTAATGACTGATGGAACTGCCCGCAGGTTAGCAAGGCGTTATAATATGCGAGTTGCAGATGATTAA MGSATDEQYAKFEEKVKRTVYVDNLSPQVTEPVLRTALDQFGTVVSVHFIPNFTEPINSSQCALVEMKDSKEANSVISVISQFPFMMSGMPRPVRAYPAEVEMFDDRPIKPGRKISFVWLGKEDPDFEVAKKMKCLTQRHVAEAAFLLKEKLAKQQQDALKGNYKKYEILEGVMTDGTARRLARRYNMRVADD
BLAST of CmaCh08G002020.1 vs. TrEMBL
Match: A0A0A0KAE7_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_6G013320 PE=4 SV=1) HSP 1 Score: 318.9 bits (816), Expect = 4.2e-84 Identity = 160/199 (80.40%), Postives = 179/199 (89.95%), Query Frame = 1
BLAST of CmaCh08G002020.1 vs. TrEMBL
Match: A0A061EIN5_THECC (RNA-binding family protein isoform 1 OS=Theobroma cacao GN=TCM_020046 PE=4 SV=1) HSP 1 Score: 263.8 bits (673), Expect = 1.6e-67 Identity = 134/199 (67.34%), Postives = 156/199 (78.39%), Query Frame = 1
BLAST of CmaCh08G002020.1 vs. TrEMBL
Match: D7SWK8_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VIT_07s0031g03120 PE=4 SV=1) HSP 1 Score: 260.0 bits (663), Expect = 2.3e-66 Identity = 127/199 (63.82%), Postives = 155/199 (77.89%), Query Frame = 1
BLAST of CmaCh08G002020.1 vs. TrEMBL
Match: V4TX22_9ROSI (Uncharacterized protein OS=Citrus clementina GN=CICLE_v10022331mg PE=4 SV=1) HSP 1 Score: 259.6 bits (662), Expect = 3.0e-66 Identity = 128/199 (64.32%), Postives = 159/199 (79.90%), Query Frame = 1
BLAST of CmaCh08G002020.1 vs. TrEMBL
Match: A0A067E8V7_CITSI (Uncharacterized protein OS=Citrus sinensis GN=CISIN_1g029074mg PE=4 SV=1) HSP 1 Score: 257.7 bits (657), Expect = 1.1e-65 Identity = 127/199 (63.82%), Postives = 157/199 (78.89%), Query Frame = 1
BLAST of CmaCh08G002020.1 vs. TAIR10
Match: AT1G05970.2 (AT1G05970.2 RNA-binding (RRM/RBD/RNP motifs) family protein) HSP 1 Score: 179.1 bits (453), Expect = 2.6e-45 Identity = 90/195 (46.15%), Postives = 132/195 (67.69%), Query Frame = 1
BLAST of CmaCh08G002020.1 vs. NCBI nr
Match: gi|659081732|ref|XP_008441485.1| (PREDICTED: uncharacterized protein LOC103485592 [Cucumis melo]) HSP 1 Score: 322.8 bits (826), Expect = 4.1e-85 Identity = 161/199 (80.90%), Postives = 180/199 (90.45%), Query Frame = 1
BLAST of CmaCh08G002020.1 vs. NCBI nr
Match: gi|449441282|ref|XP_004138411.1| (PREDICTED: uncharacterized protein LOC101221287 [Cucumis sativus]) HSP 1 Score: 318.9 bits (816), Expect = 6.0e-84 Identity = 160/199 (80.40%), Postives = 179/199 (89.95%), Query Frame = 1
BLAST of CmaCh08G002020.1 vs. NCBI nr
Match: gi|590655353|ref|XP_007033963.1| (RNA-binding family protein isoform 1 [Theobroma cacao]) HSP 1 Score: 263.8 bits (673), Expect = 2.3e-67 Identity = 134/199 (67.34%), Postives = 156/199 (78.39%), Query Frame = 1
BLAST of CmaCh08G002020.1 vs. NCBI nr
Match: gi|296082652|emb|CBI21657.3| (unnamed protein product [Vitis vinifera]) HSP 1 Score: 260.0 bits (663), Expect = 3.3e-66 Identity = 127/199 (63.82%), Postives = 155/199 (77.89%), Query Frame = 1
BLAST of CmaCh08G002020.1 vs. NCBI nr
Match: gi|225438281|ref|XP_002269083.1| (PREDICTED: uncharacterized protein LOC100255901 [Vitis vinifera]) HSP 1 Score: 260.0 bits (663), Expect = 3.3e-66 Identity = 127/199 (63.82%), Postives = 155/199 (77.89%), Query Frame = 1
The following BLAST results are available for this feature:
The following terms have been associated with this mRNA:
GO Assignments
This mRNA is annotated with the following GO terms.
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following exon feature(s) are a part of this mRNA:
The following five_prime_UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Analysis Name: InterPro Annotations of Cucurbita maxima
Date Performed: 2017-05-20
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