CmaCh08G000240.1 (mRNA) Cucurbita maxima (Rimu)
The following sequences are available for this feature:
Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.GAGATGATCTGACAAACTGAATCCCAAACGCCGTAACGGACCCTCCCTAAACATCCCCGTTTACGCCTTCCCAAAACCATTCTCCAATCTCCATTAAGTCACGTGCTCTTCTTCTTAACAATATTCTTATCATTTTTCTTTTTCTTTTTCTTTTCCCTCTTTATATTTATATGGCTTTGCAGCAGCTTACCCTTGGCCCAACTCCCGTTCACGCCGTTTCCGACGCCGTCACTAATGCCCTTGACGCCCGCCCCATCTCATCTGACGGCGGAGACAACGGCAGCAAAACCCCCAGGCTCCCCCGTTGGACCCGCCAGGAGATTCTCGTCCTCATACAGGGCAAGAAGGTTGCTGAGACCAGGGTTCGCGGAGGCCGGGCCGCTACTCTCGCCTTTGGTTCCGCCCAGCTCGAGCCCAAGTGGGCCTCTGTCTCCTCCTACTGTAAGAGGCATGGGGTTAATCGGGGTCCGGTTCAGTGCCGCAAGAGATGGAGCAATTTGGCTGGCGACTTCAAGAAGATCAAGGACTGGGAGTCCCAAATTAGGGATGACTCTGAATCCTTTTGGGTCACGAGGAACGATTTGAGGCGCGAGAGGAAATTGCCAGGGTTTTTCGACAGAGAGGTTTATGATATCTTGGAATCCGGCTCGGCTCCTTCGCCGTCGCCGACTCTGGCTCTCGCCCTCGCTCCTGCTCCTGCTCCTGCTCCTCCTCCTCCTCCTCCTCCTCCGGTCCCCACTCTCACGTCAGCCCTAAATTCCGATGACGCCGAGCCGGAGCACGTCTTCGATAGTTTTAAAACTGCGGCAGCGGACGACGGCTTGTTTTCCGATTTCGAGCAGGACGAAACCAGCCAGAGCCCCATCAAGGAGGTCCCGGGGAAGGAGGCTCCGGTCCCGACGCTCGACGAGGAAATTCCTGCTCCGGCACCTTTATCAGGTAATTGGAGAAGAAGGGTCAAATTCAAATCTCTCTCTATTTGTTTAATTCAACCTGCGTGGTCTCCAAATAATGATAACCTGCGTGGTCTCCAAAAGATCCGGTCTCAAAAAATTAAATGACAACTCTTCCTGGTTGTTTCGAGATTCTTGCAGCTTATGTGGCAATTATTCTTTTCTCCTTCCACCCTTCTTAAAAAACCATTTTATATGTTCGGTCGGCTTCGAAGAAGATTTGAAGCTCCATTTTATCTCTAGTTTCAATTTCTTTCCCCTTGATTTACAGAGAAGCTGTACCAACCTGCTAGTCAAGGTTGTCCTGATCAAGGTAAGCTCAAAGTACAATTCGAATACATATTCATTCTGGGATTCTGTTGTAAACCCTTCCTTCAGACACAAATATTTGTTCATAATCATTGTGGTCGTTTGATGGTTCAACCTTTCATTTAGAGGATGAAAGAATATCTCTGGTGCTGTTGCACGCCTACGCCTATGTTCATTAGCTGCAAAGATTAGTTCTTTTTTGTCTTCTCAATTCCGGATGAATAATGAAGTCAATAAAGCACTATCTTCTTATATTGTTGATTTGATATGCTTTATCTTGTGCGCTTCAAATTTTCAGTCAGAATCCCTTTTTTGGTACCCACTAAGCTTTTGTGTCTGTACGTTCGTGAATCCTATTGTTTTTACCCCTCCCCCTCCTTTCCATTACGAGCGTCGCAGTTTCAAAATTCAGCTGGCGCTGCGAATCTGTTTTGTGTGGTCAAAGTTTGAGTGTCCGTTCTGTGAAGGCTCAAAAACTTGGGATCAAAATCTTGTTAGAGGTGTTGTTTAGTTGGGTTTGGGAAGCTTCAGAGTCCAACATTATGAAGACGGATGCCTGTTTTATTTTTTTTTTGTTGGTGTTCTGAATCCCCAAATTGTTGGCAAGAGTGGAGACAATAATAACTTATTGTGAGCCCAATCTGGTGTGCAACAGGCACGTCAAATGAGAGAGAGGCAGCAGCAAATCCGGAGATAGGATCGAGTTTGCAAGAGGGACGGAAGCGGAAGCGCATGGCAAAAGAGGGGGAGGAGGAAAGTATGATGGTGCAGGATGAGTTGATTGGCATCCTGGAAAAGAATGGGAAACTGCTGACTGCCCAACTTGAAGCTCAAAACATGAACTTCCAGCTGGACCGGGAGCAGCGAAGATACCACGCAGATGGGCTAGTGACGGTTCTGAACAAGCTCGCAGATGCTCTAGGCAGGATCGCGGATAAGCTGTAGAACAAGAAGCAGGCAGGGCAGATGAGTAGATGTGTACATAAGCAGCAGCAGCAACGTGTATGTGCCTTTTTATGACGACGGCCAAATTAGTGGAGAGTAGAATTTACGTAGGTTGCCCCATACACAGATAAGAGTTGATATCTGACCACATTTCATTTTCTGCTATATTTGTAAATCTTTATTATTATTTTATTTTCATAAAGACGCATTTGCCTCGTTC GAGATGATCTGACAAACTGAATCCCAAACGCCGTAACGGACCCTCCCTAAACATCCCCGTTTACGCCTTCCCAAAACCATTCTCCAATCTCCATTAAGTCACGTGCTCTTCTTCTTAACAATATTCTTATCATTTTTCTTTTTCTTTTTCTTTTCCCTCTTTATATTTATATGGCTTTGCAGCAGCTTACCCTTGGCCCAACTCCCGTTCACGCCGTTTCCGACGCCGTCACTAATGCCCTTGACGCCCGCCCCATCTCATCTGACGGCGGAGACAACGGCAGCAAAACCCCCAGGCTCCCCCGTTGGACCCGCCAGGAGATTCTCGTCCTCATACAGGGCAAGAAGGTTGCTGAGACCAGGGTTCGCGGAGGCCGGGCCGCTACTCTCGCCTTTGGTTCCGCCCAGCTCGAGCCCAAGTGGGCCTCTGTCTCCTCCTACTGTAAGAGGCATGGGGTTAATCGGGGTCCGGTTCAGTGCCGCAAGAGATGGAGCAATTTGGCTGGCGACTTCAAGAAGATCAAGGACTGGGAGTCCCAAATTAGGGATGACTCTGAATCCTTTTGGGTCACGAGGAACGATTTGAGGCGCGAGAGGAAATTGCCAGGGTTTTTCGACAGAGAGGTTTATGATATCTTGGAATCCGGCTCGGCTCCTTCGCCGTCGCCGACTCTGGCTCTCGCCCTCGCTCCTGCTCCTGCTCCTGCTCCTCCTCCTCCTCCTCCTCCTCCGGTCCCCACTCTCACGTCAGCCCTAAATTCCGATGACGCCGAGCCGGAGCACGTCTTCGATAGTTTTAAAACTGCGGCAGCGGACGACGGCTTGTTTTCCGATTTCGAGCAGGACGAAACCAGCCAGAGCCCCATCAAGGAGGTCCCGGGGAAGGAGGCTCCGGTCCCGACGCTCGACGAGGAAATTCCTGCTCCGGCACCTTTATCAGAGAAGCTGTACCAACCTGCTAGTCAAGGTTGTCCTGATCAAGGCACGTCAAATGAGAGAGAGGCAGCAGCAAATCCGGAGATAGGATCGAGTTTGCAAGAGGGACGGAAGCGGAAGCGCATGGCAAAAGAGGGGGAGGAGGAAAGTATGATGGTGCAGGATGAGTTGATTGGCATCCTGGAAAAGAATGGGAAACTGCTGACTGCCCAACTTGAAGCTCAAAACATGAACTTCCAGCTGGACCGGGAGCAGCGAAGATACCACGCAGATGGGCTAGTGACGGTTCTGAACAAGCTCGCAGATGCTCTAGGCAGGATCGCGGATAAGCTGTAGAACAAGAAGCAGGCAGGGCAGATGAGTAGATGTGTACATAAGCAGCAGCAGCAACGTGTATGTGCCTTTTTATGACGACGGCCAAATTAGTGGAGAGTAGAATTTACGTAGGTTGCCCCATACACAGATAAGAGTTGATATCTGACCACATTTCATTTTCTGCTATATTTGTAAATCTTTATTATTATTTTATTTTCATAAAGACGCATTTGCCTCGTTC ATGGCTTTGCAGCAGCTTACCCTTGGCCCAACTCCCGTTCACGCCGTTTCCGACGCCGTCACTAATGCCCTTGACGCCCGCCCCATCTCATCTGACGGCGGAGACAACGGCAGCAAAACCCCCAGGCTCCCCCGTTGGACCCGCCAGGAGATTCTCGTCCTCATACAGGGCAAGAAGGTTGCTGAGACCAGGGTTCGCGGAGGCCGGGCCGCTACTCTCGCCTTTGGTTCCGCCCAGCTCGAGCCCAAGTGGGCCTCTGTCTCCTCCTACTGTAAGAGGCATGGGGTTAATCGGGGTCCGGTTCAGTGCCGCAAGAGATGGAGCAATTTGGCTGGCGACTTCAAGAAGATCAAGGACTGGGAGTCCCAAATTAGGGATGACTCTGAATCCTTTTGGGTCACGAGGAACGATTTGAGGCGCGAGAGGAAATTGCCAGGGTTTTTCGACAGAGAGGTTTATGATATCTTGGAATCCGGCTCGGCTCCTTCGCCGTCGCCGACTCTGGCTCTCGCCCTCGCTCCTGCTCCTGCTCCTGCTCCTCCTCCTCCTCCTCCTCCTCCGGTCCCCACTCTCACGTCAGCCCTAAATTCCGATGACGCCGAGCCGGAGCACGTCTTCGATAGTTTTAAAACTGCGGCAGCGGACGACGGCTTGTTTTCCGATTTCGAGCAGGACGAAACCAGCCAGAGCCCCATCAAGGAGGTCCCGGGGAAGGAGGCTCCGGTCCCGACGCTCGACGAGGAAATTCCTGCTCCGGCACCTTTATCAGAGAAGCTGTACCAACCTGCTAGTCAAGGTTGTCCTGATCAAGGCACGTCAAATGAGAGAGAGGCAGCAGCAAATCCGGAGATAGGATCGAGTTTGCAAGAGGGACGGAAGCGGAAGCGCATGGCAAAAGAGGGGGAGGAGGAAAGTATGATGGTGCAGGATGAGTTGATTGGCATCCTGGAAAAGAATGGGAAACTGCTGACTGCCCAACTTGAAGCTCAAAACATGAACTTCCAGCTGGACCGGGAGCAGCGAAGATACCACGCAGATGGGCTAGTGACGGTTCTGAACAAGCTCGCAGATGCTCTAGGCAGGATCGCGGATAAGCTGTAG MALQQLTLGPTPVHAVSDAVTNALDARPISSDGGDNGSKTPRLPRWTRQEILVLIQGKKVAETRVRGGRAATLAFGSAQLEPKWASVSSYCKRHGVNRGPVQCRKRWSNLAGDFKKIKDWESQIRDDSESFWVTRNDLRRERKLPGFFDREVYDILESGSAPSPSPTLALALAPAPAPAPPPPPPPPVPTLTSALNSDDAEPEHVFDSFKTAAADDGLFSDFEQDETSQSPIKEVPGKEAPVPTLDEEIPAPAPLSEKLYQPASQGCPDQGTSNEREAAANPEIGSSLQEGRKRKRMAKEGEEESMMVQDELIGILEKNGKLLTAQLEAQNMNFQLDREQRRYHADGLVTVLNKLADALGRIADKL
BLAST of CmaCh08G000240.1 vs. Swiss-Prot
Match: ASR3_ARATH (Trihelix transcription factor ASR3 OS=Arabidopsis thaliana GN=ASR3 PE=1 SV=1) HSP 1 Score: 317.0 bits (811), Expect = 2.7e-85 Identity = 191/374 (51.07%), Postives = 241/374 (64.44%), Query Frame = 1
BLAST of CmaCh08G000240.1 vs. TrEMBL
Match: A0A0A0KDF5_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_6G091850 PE=4 SV=1) HSP 1 Score: 564.7 bits (1454), Expect = 8.3e-158 Identity = 299/371 (80.59%), Postives = 324/371 (87.33%), Query Frame = 1
BLAST of CmaCh08G000240.1 vs. TrEMBL
Match: V4SAN3_9ROSI (Uncharacterized protein OS=Citrus clementina GN=CICLE_v10005329mg PE=4 SV=1) HSP 1 Score: 420.2 bits (1079), Expect = 2.5e-114 Identity = 231/370 (62.43%), Postives = 273/370 (73.78%), Query Frame = 1
BLAST of CmaCh08G000240.1 vs. TrEMBL
Match: A0A067F3Y6_CITSI (Uncharacterized protein OS=Citrus sinensis GN=CISIN_1g019057mg PE=4 SV=1) HSP 1 Score: 420.2 bits (1079), Expect = 2.5e-114 Identity = 231/370 (62.43%), Postives = 273/370 (73.78%), Query Frame = 1
BLAST of CmaCh08G000240.1 vs. TrEMBL
Match: A0A067JH78_JATCU (Uncharacterized protein OS=Jatropha curcas GN=JCGZ_23099 PE=4 SV=1) HSP 1 Score: 417.9 bits (1073), Expect = 1.2e-113 Identity = 231/366 (63.11%), Postives = 269/366 (73.50%), Query Frame = 1
BLAST of CmaCh08G000240.1 vs. TrEMBL
Match: F6HJ64_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VIT_01s0150g00050 PE=4 SV=1) HSP 1 Score: 411.4 bits (1056), Expect = 1.2e-111 Identity = 226/367 (61.58%), Postives = 273/367 (74.39%), Query Frame = 1
BLAST of CmaCh08G000240.1 vs. TAIR10
Match: AT2G33550.1 (AT2G33550.1 Homeodomain-like superfamily protein) HSP 1 Score: 317.0 bits (811), Expect = 1.5e-86 Identity = 191/374 (51.07%), Postives = 241/374 (64.44%), Query Frame = 1
BLAST of CmaCh08G000240.1 vs. TAIR10
Match: AT4G31270.1 (AT4G31270.1 sequence-specific DNA binding transcription factors) HSP 1 Score: 71.6 bits (174), Expect = 1.1e-12 Identity = 40/128 (31.25%), Postives = 61/128 (47.66%), Query Frame = 1
BLAST of CmaCh08G000240.1 vs. TAIR10
Match: AT1G31310.1 (AT1G31310.1 hydroxyproline-rich glycoprotein family protein) HSP 1 Score: 59.7 bits (143), Expect = 4.4e-09 Identity = 47/166 (28.31%), Postives = 72/166 (43.37%), Query Frame = 1
BLAST of CmaCh08G000240.1 vs. TAIR10
Match: AT2G35640.1 (AT2G35640.1 Homeodomain-like superfamily protein) HSP 1 Score: 54.7 bits (130), Expect = 1.4e-07 Identity = 61/215 (28.37%), Postives = 89/215 (41.40%), Query Frame = 1
BLAST of CmaCh08G000240.1 vs. NCBI nr
Match: gi|449445594|ref|XP_004140557.1| (PREDICTED: uncharacterized protein LOC101222632 isoform X1 [Cucumis sativus]) HSP 1 Score: 564.7 bits (1454), Expect = 1.2e-157 Identity = 299/371 (80.59%), Postives = 324/371 (87.33%), Query Frame = 1
BLAST of CmaCh08G000240.1 vs. NCBI nr
Match: gi|659119916|ref|XP_008459912.1| (PREDICTED: uncharacterized protein LOC103498891 isoform X1 [Cucumis melo]) HSP 1 Score: 562.4 bits (1448), Expect = 5.9e-157 Identity = 298/371 (80.32%), Postives = 323/371 (87.06%), Query Frame = 1
BLAST of CmaCh08G000240.1 vs. NCBI nr
Match: gi|778711738|ref|XP_011656788.1| (PREDICTED: uncharacterized protein LOC101222632 isoform X2 [Cucumis sativus]) HSP 1 Score: 532.3 bits (1370), Expect = 6.5e-148 Identity = 280/343 (81.63%), Postives = 303/343 (88.34%), Query Frame = 1
BLAST of CmaCh08G000240.1 vs. NCBI nr
Match: gi|659119918|ref|XP_008459913.1| (PREDICTED: uncharacterized protein LOC103498891 isoform X2 [Cucumis melo]) HSP 1 Score: 530.0 bits (1364), Expect = 3.2e-147 Identity = 279/343 (81.34%), Postives = 302/343 (88.05%), Query Frame = 1
BLAST of CmaCh08G000240.1 vs. NCBI nr
Match: gi|567855303|ref|XP_006420771.1| (hypothetical protein CICLE_v10005329mg [Citrus clementina]) HSP 1 Score: 420.2 bits (1079), Expect = 3.6e-114 Identity = 231/370 (62.43%), Postives = 273/370 (73.78%), Query Frame = 1
The following BLAST results are available for this feature:
The following terms have been associated with this mRNA:
GO Assignments
This mRNA is annotated with the following GO terms.
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following three_prime_UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following five_prime_UTR feature(s) are a part of this mRNA:
The following exon feature(s) are a part of this mRNA:
Analysis Name: InterPro Annotations of Cucurbita maxima
Date Performed: 2017-05-20
|