CmaCh08G000180.1 (mRNA) Cucurbita maxima (Rimu)
The following sequences are available for this feature:
Legend: exonfive_prime_UTRCDS Hold the cursor over a type above to highlight its positions in the sequence below.CTCCACCCCGCAAGCTTCCAAAGAAACAGAATGAAAGGGAACTGAGATTTGCAACATTCATTCATTCATCCATTCATATAAATTCAATTCACTTCCTTCCTCCTACTTCATCTCCTTTTCCTGCGATGACTCATTTCCAGTCTTCTTCCCATACTCCCAACACTCCCAACCATAACTCTCTTCATGACCCCTCCGCCCCCCCTGATAAGGCTTGGCTCCGCCTTAGCATCGCCCCCACTCATCTCCACCATCCTCAACCACCCGCCTTTGCCTTTGACGCCGCCGGACTCAAAATAAATGAGTCTTTGCCTCACCTTTCCACCCCATTTCAACTCCACCCTGCACTTCACCCTCCTACCTCCAACTCCCACGTCCTCAGGGTCATTGACCCTCCCCGCCGCCCTCAATCCGGGATTTGGTTTTCTCTCCAACCTTTGGAATTAAACCAGTATGAAAACTCAACCTAATTACACCCCATCTTACGTTTTTGTGAATCCCCATTTTTTATTTTATTTCTTGTTTACTTTTTGTAATGTAGAGGGAAACACCCGGCGTTGCCTCAGAGATCCACCACCTACTTGAGAATCAAGTATCATTTCTTGTCCTTTTTTTCTTGTTTTTCTTAAAGTAGGATGTGGGTTTGATTTCAAATCTTCCGTATAATATAGGTTGATTAAGTTTTATGAAGCCTGTAATAATTAAGTTTGAATGGTTGTGAAGGGATGGAAGAATGAGAGTTGGATTAGTAATGAAGTATTTGGTGAAAAAGCTGAGACTGGAAAGCGAAACAGAGGTATTTATTAATAAACACACTTCTTCTTCCCCTTTTTCTTCAACACACATGTTGTTTGAATAAAATTTGTTACCCAGAAATCGAATTTAATATGTTAATCCCTTCTCTACCATCTTGGTTATTTAGGTTTAACCTAGTCTTTCTTTACATTTAAAAAAGAAAAAAAAGAAACACAGAAGTTTGTAGTAGTATTACTTTTAGGAATATGGGTGTGATTGAGATGAAAAGCTTTTGTCTTGTCGATATCTAGGAAATTGGGTCATTTTTTTAATCTTTCTAAAAATTGGGGCTCAACCTTTCTTGTCTGATTCGTTATGGATGCTTGTGTGTTTTTTTTCTTTTTCCTCTCTCTCGAAAAAAAGAGAAAAGAAAAAGAAAAAGACAAGAGTGGTATGAGTAAAGGTTGATGAACAGATTTAATTTTAAAATGATGGGATTATGGGTAAAACAAATCATAAAAACCGACACCAAAACCACGAACAAATGAAAAATATTAACAATAAACTCAAGAAGTTAGAAAAGGGGTTGCTAATTTTTGTATTCATAGCTGTTCCTCAATATAATTGAAACTCAAGAATCGATGTTACTGCAAATAATGAAAGATAATTGAAGGAGATGCATGTGTAGGAGAGGTTATGTTTTAAAATGGTGTTAAAATGGCCATAAATTGATGTTAAAACGAGGTTATGTTTCTTCCTACGCATTATTTATAATTTTTTGTTTCATTATTTTCTACAATTATTGATGTCACCAATACTATATAATTGAAGACTTGATTATCATGTGTAATATATATTTGTGATTATTTAGGACACGCCCAGGCATTCCGTTTGGTGAGCATTAGAACGAGGAGTCAACTCAACTCTAATTATGAAGCCCTTTTGTTGTATTTTATTTTATTTAGTATGATATTGATATTGATATTGATATTGATATTGCATGGAACAGACAGCTATTGCATGCCTTATTGTTGTCTTCGTTGACTCGGAATTAGAAGTCGATGTTTGTGATTATTGTCTATTTGAATTGGATTTGATAATATAATAATAACGGAAAATGGAAATGAAACGCAGGTAGAGATATGGTGCAGAGGGGAAAAGGTGGAAGGTTGGTTGACGATGCAGCAGATTAGAGACAACATATGGACCTCTCAACACTCCTCTTTGACTTTGCTTCCACATTCCTCAACCATTCCTCACATCATGCTTCTTCACTACTCCTACTCCTACTCCTACTCCTACTCCTACTAA CTCCACCCCGCAAGCTTCCAAAGAAACAGAATGAAAGGGAACTGAGATTTGCAACATTCATTCATTCATCCATTCATATAAATTCAATTCACTTCCTTCCTCCTACTTCATCTCCTTTTCCTGCGATGACTCATTTCCAGTCTTCTTCCCATACTCCCAACACTCCCAACCATAACTCTCTTCATGACCCCTCCGCCCCCCCTGATAAGGCTTGGCTCCGCCTTAGCATCGCCCCCACTCATCTCCACCATCCTCAACCACCCGCCTTTGCCTTTGACGCCGCCGGACTCAAAATAAATGAGTCTTTGCCTCACCTTTCCACCCCATTTCAACTCCACCCTGCACTTCACCCTCCTACCTCCAACTCCCACGTCCTCAGGGTCATTGACCCTCCCCGCCGCCCTCAATCCGGGATTTGGTTTTCTCTCCAACCTTTGGAATTAAACCAAGGGAAACACCCGGCGTTGCCTCAGAGATCCACCACCTACTTGAGAATCAAGGATGGAAGAATGAGAGTTGGATTAGTAATGAAGTATTTGGTGAAAAAGCTGAGACTGGAAAGCGAAACAGAGGTAGAGATATGGTGCAGAGGGGAAAAGGTGGAAGGTTGGTTGACGATGCAGCAGATTAGAGACAACATATGGACCTCTCAACACTCCTCTTTGACTTTGCTTCCACATTCCTCAACCATTCCTCACATCATGCTTCTTCACTACTCCTACTCCTACTCCTACTCCTACTCCTACTAA ATGACTCATTTCCAGTCTTCTTCCCATACTCCCAACACTCCCAACCATAACTCTCTTCATGACCCCTCCGCCCCCCCTGATAAGGCTTGGCTCCGCCTTAGCATCGCCCCCACTCATCTCCACCATCCTCAACCACCCGCCTTTGCCTTTGACGCCGCCGGACTCAAAATAAATGAGTCTTTGCCTCACCTTTCCACCCCATTTCAACTCCACCCTGCACTTCACCCTCCTACCTCCAACTCCCACGTCCTCAGGGTCATTGACCCTCCCCGCCGCCCTCAATCCGGGATTTGGTTTTCTCTCCAACCTTTGGAATTAAACCAAGGGAAACACCCGGCGTTGCCTCAGAGATCCACCACCTACTTGAGAATCAAGGATGGAAGAATGAGAGTTGGATTAGTAATGAAGTATTTGGTGAAAAAGCTGAGACTGGAAAGCGAAACAGAGGTAGAGATATGGTGCAGAGGGGAAAAGGTGGAAGGTTGGTTGACGATGCAGCAGATTAGAGACAACATATGGACCTCTCAACACTCCTCTTTGACTTTGCTTCCACATTCCTCAACCATTCCTCACATCATGCTTCTTCACTACTCCTACTCCTACTCCTACTCCTACTCCTACTAA MTHFQSSSHTPNTPNHNSLHDPSAPPDKAWLRLSIAPTHLHHPQPPAFAFDAAGLKINESLPHLSTPFQLHPALHPPTSNSHVLRVIDPPRRPQSGIWFSLQPLELNQGKHPALPQRSTTYLRIKDGRMRVGLVMKYLVKKLRLESETEVEIWCRGEKVEGWLTMQQIRDNIWTSQHSSLTLLPHSSTIPHIMLLHYSYSYSYSYSY
BLAST of CmaCh08G000180.1 vs. Swiss-Prot
Match: DRIP2_ARATH (E3 ubiquitin protein ligase DRIP2 OS=Arabidopsis thaliana GN=DRIP2 PE=1 SV=1) HSP 1 Score: 68.2 bits (165), Expect = 1.2e-10 Identity = 45/110 (40.91%), Postives = 60/110 (54.55%), Query Frame = 1
BLAST of CmaCh08G000180.1 vs. Swiss-Prot
Match: DRIP1_ARATH (E3 ubiquitin protein ligase DRIP1 OS=Arabidopsis thaliana GN=DRIP1 PE=1 SV=2) HSP 1 Score: 65.1 bits (157), Expect = 1.0e-09 Identity = 43/110 (39.09%), Postives = 58/110 (52.73%), Query Frame = 1
BLAST of CmaCh08G000180.1 vs. Swiss-Prot
Match: DRIPH_ARATH (Probable E3 ubiquitin protein ligase DRIPH OS=Arabidopsis thaliana GN=At3g23060 PE=2 SV=1) HSP 1 Score: 59.3 bits (142), Expect = 5.7e-08 Identity = 45/119 (37.82%), Postives = 62/119 (52.10%), Query Frame = 1
BLAST of CmaCh08G000180.1 vs. TrEMBL
Match: A0A0A0KC58_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_6G091920 PE=4 SV=1) HSP 1 Score: 181.4 bits (459), Expect = 1.1e-42 Identity = 96/146 (65.75%), Postives = 114/146 (78.08%), Query Frame = 1
BLAST of CmaCh08G000180.1 vs. TrEMBL
Match: A0A061E508_THECC (RING finger protein, putative OS=Theobroma cacao GN=TCM_008415 PE=4 SV=1) HSP 1 Score: 144.1 bits (362), Expect = 2.0e-31 Identity = 75/138 (54.35%), Postives = 100/138 (72.46%), Query Frame = 1
BLAST of CmaCh08G000180.1 vs. TrEMBL
Match: A0A0D2S229_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_012G125300 PE=4 SV=1) HSP 1 Score: 144.1 bits (362), Expect = 2.0e-31 Identity = 75/139 (53.96%), Postives = 100/139 (71.94%), Query Frame = 1
BLAST of CmaCh08G000180.1 vs. TrEMBL
Match: A0A0S3RRA4_PHAAN (Uncharacterized protein OS=Vigna angularis var. angularis GN=Vigan.04G022600 PE=4 SV=1) HSP 1 Score: 141.7 bits (356), Expect = 9.8e-31 Identity = 83/192 (43.23%), Postives = 114/192 (59.38%), Query Frame = 1
BLAST of CmaCh08G000180.1 vs. TrEMBL
Match: A0A0D2PVX2_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_005G196300 PE=4 SV=1) HSP 1 Score: 141.7 bits (356), Expect = 9.8e-31 Identity = 74/135 (54.81%), Postives = 100/135 (74.07%), Query Frame = 1
BLAST of CmaCh08G000180.1 vs. TAIR10
Match: AT5G13250.1 (AT5G13250.1 RING finger protein) HSP 1 Score: 127.9 bits (320), Expect = 7.4e-30 Identity = 73/129 (56.59%), Postives = 91/129 (70.54%), Query Frame = 1
BLAST of CmaCh08G000180.1 vs. TAIR10
Match: AT1G28080.1 (AT1G28080.1 RING finger protein) HSP 1 Score: 84.0 bits (206), Expect = 1.2e-16 Identity = 42/72 (58.33%), Postives = 54/72 (75.00%), Query Frame = 1
BLAST of CmaCh08G000180.1 vs. TAIR10
Match: AT2G30580.1 (AT2G30580.1 DREB2A-interacting protein 2) HSP 1 Score: 68.2 bits (165), Expect = 6.9e-12 Identity = 45/110 (40.91%), Postives = 60/110 (54.55%), Query Frame = 1
BLAST of CmaCh08G000180.1 vs. TAIR10
Match: AT1G06770.1 (AT1G06770.1 DREB2A-interacting protein 1) HSP 1 Score: 65.1 bits (157), Expect = 5.9e-11 Identity = 43/110 (39.09%), Postives = 58/110 (52.73%), Query Frame = 1
BLAST of CmaCh08G000180.1 vs. TAIR10
Match: AT3G23060.1 (AT3G23060.1 RING/U-box superfamily protein) HSP 1 Score: 59.3 bits (142), Expect = 3.2e-09 Identity = 45/119 (37.82%), Postives = 62/119 (52.10%), Query Frame = 1
BLAST of CmaCh08G000180.1 vs. NCBI nr
Match: gi|449445780|ref|XP_004140650.1| (PREDICTED: uncharacterized protein LOC101204945 [Cucumis sativus]) HSP 1 Score: 181.4 bits (459), Expect = 1.6e-42 Identity = 96/146 (65.75%), Postives = 114/146 (78.08%), Query Frame = 1
BLAST of CmaCh08G000180.1 vs. NCBI nr
Match: gi|659119902|ref|XP_008459904.1| (PREDICTED: uncharacterized protein LOC103498884 [Cucumis melo]) HSP 1 Score: 181.4 bits (459), Expect = 1.6e-42 Identity = 96/145 (66.21%), Postives = 114/145 (78.62%), Query Frame = 1
BLAST of CmaCh08G000180.1 vs. NCBI nr
Match: gi|1000980649|ref|XP_015570440.1| (PREDICTED: putative uncharacterized protein DDB_G0277255 isoform X2 [Ricinus communis]) HSP 1 Score: 148.7 bits (374), Expect = 1.1e-32 Identity = 80/140 (57.14%), Postives = 104/140 (74.29%), Query Frame = 1
BLAST of CmaCh08G000180.1 vs. NCBI nr
Match: gi|694359679|ref|XP_009359897.1| (PREDICTED: uncharacterized protein LOC103950418 [Pyrus x bretschneideri]) HSP 1 Score: 148.3 bits (373), Expect = 1.5e-32 Identity = 85/165 (51.52%), Postives = 108/165 (65.45%), Query Frame = 1
BLAST of CmaCh08G000180.1 vs. NCBI nr
Match: gi|802760020|ref|XP_012089419.1| (PREDICTED: uncharacterized protein LOC105647798 [Jatropha curcas]) HSP 1 Score: 145.6 bits (366), Expect = 9.7e-32 Identity = 78/136 (57.35%), Postives = 99/136 (72.79%), Query Frame = 1
The following BLAST results are available for this feature:
The following terms have been associated with this mRNA:
GO Assignments
This mRNA is annotated with the following GO terms.
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following exon feature(s) are a part of this mRNA:
The following five_prime_UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Analysis Name: InterPro Annotations of Cucurbita maxima
Date Performed: 2017-05-20
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