CmaCh07G011670.1 (mRNA) Cucurbita maxima (Rimu) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CmaCh07G011670.1
Type	mRNA
Organism	Cucurbita maxima (Cucurbita maxima (Rimu))
Description	H/ACA ribonucleoprotein complex subunit 1-like protein 1
Location	Cma_Chr07 : 6395851 .. 6397763 (-)
Sequence length	891

Genome Viewer

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

GTCACTGTACTTCAGCGCGAAACCACACACATAAAACCCTAAAAACCCTACACGACATATTGCAGCGAGCCTCCGTTCAGTAAAAGCTCCCTCGTTTTAGCACAGCAAGAGCAGAAGAATGCGACCTCCAAGAGGCGGCGGGGGCTTCAGGGGAGGCCGTGACGGTGGTTTTGGTGGTAGAGGAGGTGGTCGAGGCGGCGGTGGCTTCAGGGGAGGTGGTCGCTTTGGTGGTCGCGGCGGTGGAGGGTTCCGTGATGAGGGTCCTCCATCTGAAGTAGTTGGTTCGTATCTCCCATCACTTCTCAAATCTTTCATGGCTCTCTGTTTTCATTCATCTTTGTGCTTCTTCGCTCTCTGGATGTTTACAGAAGAGGTTTCATAAAATAGTTTGTTTCCCCACTTTTTTCGTTACAATGCGATATTCAGATGTCGTGGATATTTTTGCTTGCATTATCGGTATAAACGACGAATTCTGTTTTTGAACTCTCCCTTCCTTTCTAGCAATGAATATACACAAGCTTGGATGCCTATTTTTCTCCAGAAAGTTTTTGGTTTATTTCCTCCTTTTTGTTTCCTGTATTCATCAGTATTAAGATATATATTTTTTTTTTTCTGTTACAGAGGTTTCAACTTTTCTTCACGCATGCGAGGGAGATGCAGTGACAAAGCTTACAAATGAGAAGATTCCTTTTTTTAATGCCCCAATCTATCTTCAAAATAAGACCCAGATAGGCAAAGTCGATGAAATTTTCGGCCCCATCAATGAATCCGTGAGTCCACTGGCCTTCTTGATTTTGTTAGTTGTTTAGTTTTGAAAATAGTTTTGATATACGATAAATCCTTGTTTTTTTAACCTGATTGCAGTACTTCTCGATCAAGATGATGGAAGGAATTGTGGCCACCTCATATGCTTCTGGGGATAAATTTTATATCGATCCAGCTAAACTTTTACCTCTCGCGAGATTCCTCCCACAACCGAAGTACGCACTCCTCCCACAGCTTAACTTTTTACTAGTTTTTTTTGTTCTTCTTTTCTACGTATTAGCTTGTTAGGTTCAGGAGTAATGTTTGGATAGAATTTTGGGTTATATGTTTGATAGCATGTCTGTGGTGATAAATGTAATAAGATCACGGGAAACTGAAAATATGGATGTTATCCTAAATACTGTCTATCTTAATTGCCAATTTGTTTATTGTGTATTTCACAAACCATATAGCTAAGTCTGGTGTCACTATGATGAAAATTTCAAACCTTTTGTGCTTCTAGTTCTTGTTCCTTAAGTAAGCTCATAGTCCTCAGTGTACCCATTGTCTATTTGACACCAACAATTTAGTTTTCTGCAAATTTACCTCTTGTTCTATGAATGGCTATCGTCATGGCTCCTTTTCTCTATTTAGTTTCCAAATACTTGTAGTTGATCATGATTCATATGAATTTTTTTCACACTGATAGAGAAGGTTATAGAAATTATTTTTAAATTCAAAACAAGAACTTCTATGCCATGCTTCCCAACGTTTATGTTTGCTTTTTGTATGAAACTAATTTTGATGTCTGATCTTTGTTTCAGGGGACAGTTTGCCGCTAGAGGTGGTGGCCGTGGTGGGGGCAGAGGTGGTGGCAGAGGAGGCCGTGGGGGTGGTGGCTTTCGTGGAAGGGGTGGCCCAAGAGGTGGCAGAGGCGGCCCTCCAAGAGGTGGTGGCCGTGGTGGGGGCTTTAGGGGTAGAGGAAGATTCTAGATTAGCATTATGTACTATCATAGTTTTTATCAATTTCCATTTGTAATGTCGTTTTGATAAGCCTTAGCTAGTCTTTTTTTTTACTGTATTTTGTTTGGAATTGAACATCTCGAAATTGAATCCACAGTTTAATTTAACTCTGCTCCTATTTAATTTCTTGATAAAAATTGCAACAG

mRNA sequence

GTCACTGTACTTCAGCGCGAAACCACACACATAAAACCCTAAAAACCCTACACGACATATTGCAGCGAGCCTCCGTTCAGTAAAAGCTCCCTCGTTTTAGCACAGCAAGAGCAGAAGAATGCGACCTCCAAGAGGCGGCGGGGGCTTCAGGGGAGGCCGTGACGGTGGTTTTGGTGGTAGAGGAGGTGGTCGAGGCGGCGGTGGCTTCAGGGGAGGTGGTCGCTTTGGTGGTCGCGGCGGTGGAGGGTTCCGTGATGAGGGTCCTCCATCTGAAGTAGTTGAGGTTTCAACTTTTCTTCACGCATGCGAGGGAGATGCAGTGACAAAGCTTACAAATGAGAAGATTCCTTTTTTTAATGCCCCAATCTATCTTCAAAATAAGACCCAGATAGGCAAAGTCGATGAAATTTTCGGCCCCATCAATGAATCCTACTTCTCGATCAAGATGATGGAAGGAATTGTGGCCACCTCATATGCTTCTGGGGATAAATTTTATATCGATCCAGCTAAACTTTTACCTCTCGCGAGATTCCTCCCACAACCGAAGGGACAGTTTGCCGCTAGAGGTGGTGGCCGTGGTGGGGGCAGAGGTGGTGGCAGAGGAGGCCGTGGGGGTGGTGGCTTTCGTGGAAGGGGTGGCCCAAGAGGTGGCAGAGGCGGCCCTCCAAGAGGTGGTGGCCGTGGTGGGGGCTTTAGGGGTAGAGGAAGATTCTAGATTAGCATTATGTACTATCATAGTTTTTATCAATTTCCATTTGTAATGTCGTTTTGATAAGCCTTAGCTAGTCTTTTTTTTTACTGTATTTTGTTTGGAATTGAACATCTCGAAATTGAATCCACAGTTTAATTTAACTCTGCTCCTATTTAATTTCTTGATAAAAATTGCAACAG

Coding sequence (CDS)

ATGCGACCTCCAAGAGGCGGCGGGGGCTTCAGGGGAGGCCGTGACGGTGGTTTTGGTGGTAGAGGAGGTGGTCGAGGCGGCGGTGGCTTCAGGGGAGGTGGTCGCTTTGGTGGTCGCGGCGGTGGAGGGTTCCGTGATGAGGGTCCTCCATCTGAAGTAGTTGAGGTTTCAACTTTTCTTCACGCATGCGAGGGAGATGCAGTGACAAAGCTTACAAATGAGAAGATTCCTTTTTTTAATGCCCCAATCTATCTTCAAAATAAGACCCAGATAGGCAAAGTCGATGAAATTTTCGGCCCCATCAATGAATCCTACTTCTCGATCAAGATGATGGAAGGAATTGTGGCCACCTCATATGCTTCTGGGGATAAATTTTATATCGATCCAGCTAAACTTTTACCTCTCGCGAGATTCCTCCCACAACCGAAGGGACAGTTTGCCGCTAGAGGTGGTGGCCGTGGTGGGGGCAGAGGTGGTGGCAGAGGAGGCCGTGGGGGTGGTGGCTTTCGTGGAAGGGGTGGCCCAAGAGGTGGCAGAGGCGGCCCTCCAAGAGGTGGTGGCCGTGGTGGGGGCTTTAGGGGTAGAGGAAGATTCTAG

Protein sequence

MRPPRGGGGFRGGRDGGFGGRGGGRGGGGFRGGGRFGGRGGGGFRDEGPPSEVVEVSTFLHACEGDAVTKLTNEKIPFFNAPIYLQNKTQIGKVDEIFGPINESYFSIKMMEGIVATSYASGDKFYIDPAKLLPLARFLPQPKGQFAARGGGRGGGRGGGRGGRGGGGFRGRGGPRGGRGGPPRGGGRGGGFRGRGRF

Homology

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BLAST of CmaCh07G011670.1 vs. Swiss-Prot
Match: NLAL1_ARATH (Putative H/ACA ribonucleoprotein complex subunit 1-like protein 1 OS=Arabidopsis thaliana GN=At3g03920 PE=2 SV=1)

HSP 1 Score: 231.9 bits (590), Expect = 6.2e-60
Identity = 161/204 (78.92%), Postives = 167/204 (81.86%), Query Frame = 1


Query: 1   MRPP-RGGGGFRG--GRDGGFGGRGGGRGGGGFRGGGRFGGRGG--GGFRDEGPPSEVVE 60
           MRPP RGGGGFRG  GRDGG GGR GG GG    GGGRFGG GG  GGFRDEGPPSEVVE
Sbjct: 1   MRPPMRGGGGFRGRGGRDGGGGGRFGGGGGRFGGGGGRFGGGGGRFGGFRDEGPPSEVVE 60

Query: 61  VSTFLHACEGDAVTKLTNEKIPFFNAPIYLQNKTQIGKVDEIFGPINESYFSIKMMEGIV 120
           V+TF+HACEGDAVTKL+ EKIP FNAPIYL+NKTQIGKVDEIFGPINES FSIKMMEGIV
Sbjct: 61  VATFVHACEGDAVTKLSQEKIPHFNAPIYLENKTQIGKVDEIFGPINESLFSIKMMEGIV 120

Query: 121 ATSYASGDKFYIDPAKLLPLARFLPQPKGQFAARGGGRGGGRGGGRG-GRGGGGFRGRGG 180
           ATSY+ GDKF+IDP KLLPLARFLPQPKGQ     GG G GRG  RG GRGG   RGRG 
Sbjct: 121 ATSYSPGDKFFIDPYKLLPLARFLPQPKGQSTGGRGGAGRGRGDSRGRGRGGSFSRGRGA 180

Query: 181 PRGGRGGPPRGGGRGGGFRGRGRF 199
           PRGGR  PPRGG R G FRGRGRF
Sbjct: 181 PRGGR-FPPRGGSR-GSFRGRGRF 202

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BLAST of CmaCh07G011670.1 vs. Swiss-Prot
Match: NLAL2_ARATH (H/ACA ribonucleoprotein complex subunit 1-like protein 2 OS=Arabidopsis thaliana GN=At5g18180 PE=2 SV=1)

HSP 1 Score: 202.6 bits (514), Expect = 4.0e-51
Identity = 148/200 (74.00%), Postives = 154/200 (77.00%), Query Frame = 1


Query: 1   MRPPRGGGGF--RGGRDGGFGGRGGGRGGGGFRGGGRFGGRGGGGFRDEGPPSEVVEVST 60
           MRPPRGGG F  RGGRD   GGRG GRG    RG GRF    GGG  DEGPPSEVVEV+T
Sbjct: 1   MRPPRGGGSFRGRGGRDN--GGRGRGRG----RGRGRF----GGGNYDEGPPSEVVEVAT 60

Query: 61  FLHACEGDAVTKLTNEKIPFFNAPIYLQNKTQIGKVDEIFGPINESYFSIKMMEGIVATS 120
           FLHACEGDAV KL+N KIP FNAPIYLQNKTQIG+VDEIFGPINES FSIKM EGIVATS
Sbjct: 61  FLHACEGDAVFKLSNVKIPHFNAPIYLQNKTQIGRVDEIFGPINESLFSIKMREGIVATS 120

Query: 121 YASGDKFYIDPAKLLPLARFLPQPKGQFAARGGGRGGGRGGGRGGRGGGGFRGRGGPRG- 180
           Y+ GDKF+I P KLLPL+RFLPQPKGQ   RG GR   RG G   RG G FRGRG PRG 
Sbjct: 121 YSQGDKFFISPEKLLPLSRFLPQPKGQSGGRGEGRVPPRGRG-PPRGRGNFRGRGAPRGA 180

Query: 181 GRGGPPRGGGRGGGFRGRGR 198
            RG  PRGG R GGFRGRGR
Sbjct: 181 SRGFQPRGGPR-GGFRGRGR 188

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BLAST of CmaCh07G011670.1 vs. Swiss-Prot
Match: GAR1_CHAGB (H/ACA ribonucleoprotein complex subunit 1 OS=Chaetomium globosum (strain ATCC 6205 / CBS 148.51 / DSM 1962 / NBRC 6347 / NRRL 1970) GN=GAR1 PE=3 SV=1)

HSP 1 Score: 162.2 bits (409), Expect = 6.0e-39
Identity = 124/212 (58.49%), Postives = 139/212 (65.57%), Query Frame = 1


Query: 18  FGGRGGGRGGGGFRGGGRFGGRGGGGFRDEGPPSEVVEVSTFLHACEGDAVTKLTNEKIP 77
           F G   GRGGGGF GGGR GGRGG   RD GPP+ V+E+  F+HACEG+ V + TN K+P
Sbjct: 3   FRGAPRGRGGGGF-GGGRGGGRGGFQQRDMGPPATVLEMGKFIHACEGEMVIESTNPKVP 62

Query: 78  FFNAPIYLQNKTQIGKVDEIFGPINESYFSIKMMEGIVATSYASGDKFYIDPAKLLPLAR 137
            FNAPIYL+NKT +GKVDE+ GPIN+ YF+IK  EGI ATS+  GDKFYI   KLLPL R
Sbjct: 63  HFNAPIYLENKTAVGKVDEVLGPINQVYFTIKPSEGIQATSFKYGDKFYIAGEKLLPLER 122

Query: 138 FLPQPK-------------------------GQFAARGGGRGGGRGGGRGGRGGGGFRG- 197
           FLP+PK                         G   +RGGGRGGGRGG  G RGGGGF G 
Sbjct: 123 FLPKPKPPPGTVSKVKKPSRGGAARGGRGGPGGGFSRGGGRGGGRGGFGGSRGGGGFGGG 182

Query: 198 ----RGG-PRGGRGGPPRGGGRGGGFRGRGRF 199
               RGG PRGGRGG  RGGGRGG   GRGRF
Sbjct: 183 FGGGRGGAPRGGRGGFSRGGGRGG---GRGRF 210

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BLAST of CmaCh07G011670.1 vs. Swiss-Prot
Match: GAR1_XENTR (H/ACA ribonucleoprotein complex subunit 1 OS=Xenopus tropicalis GN=gar1 PE=2 SV=1)

HSP 1 Score: 160.6 bits (405), Expect = 1.7e-38
Identity = 133/205 (64.88%), Postives = 149/205 (72.68%), Query Frame = 1


Query: 5   RGGGGFRGGRDGGFGGRGGGRGG---GGFRGG-GRFGGRGG---GGFRDEGPPSEVVEVS 64
           RGGGG RGG  GGFGGRGGGRGG   GG RGG GR GGRGG   GG+ D+GPP  VVEV 
Sbjct: 11  RGGGGGRGG--GGFGGRGGGRGGYGQGGGRGGFGRGGGRGGFNRGGY-DQGPPESVVEVG 70

Query: 65  TFLHACEGDAVTK-LTNE-KIPFFNAPIYLQNKTQIGKVDEIFGPINESYFSIKMMEGIV 124
            F+H CE D V K +T E ++P+FNAPIYL+NK QIGKVDEIFG + + YFSIK+ E + 
Sbjct: 71  EFMHPCEDDVVCKCITQENRVPYFNAPIYLENKEQIGKVDEIFGQLRDFYFSIKLSENMK 130

Query: 125 ATSYASGDKFYIDPAKLLPLARFLPQPKGQFA-ARGGGRGGGRGGGRGGRGGGGFRGRGG 184
           A+S+    KFYIDPAKLLPL RFLP+P G+    RGGGRGGGRGGGRG  GG G  G GG
Sbjct: 131 ASSFKKLQKFYIDPAKLLPLQRFLPRPPGEKGPPRGGGRGGGRGGGRGRGGGRG--GGGG 190

Query: 185 PRGGRGGPPRGGG-----RGGGFRG 195
            RGGRGG   GGG     RGGGFRG
Sbjct: 191 FRGGRGGGFGGGGGFRGSRGGGFRG 210

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BLAST of CmaCh07G011670.1 vs. Swiss-Prot
Match: GAR1_HUMAN (H/ACA ribonucleoprotein complex subunit 1 OS=Homo sapiens GN=GAR1 PE=1 SV=1)

HSP 1 Score: 155.6 bits (392), Expect = 5.6e-37
Identity = 125/202 (61.88%), Postives = 142/202 (70.30%), Query Frame = 1


Query: 6   GGGGF-RGGRDGGFGGRGGGRGGGGFRGGGRFG-GRGGG--GF---RDEGPPSEVVEVST 65
           GGGGF RGG    F G GGG GGG FRGGGR G GRGGG  GF   +D+GPP  VV +  
Sbjct: 16  GGGGFNRGGSSNHFRGGGGGGGGGNFRGGGRGGFGRGGGRGGFNKGQDQGPPERVVLLGE 75

Query: 66  FLHACEGDAVTKLTNE--KIPFFNAPIYLQNKTQIGKVDEIFGPINESYFSIKMMEGIVA 125
           FLH CE D V K T +  K+P+FNAP+YL+NK QIGKVDEIFG + + YFS+K+ E + A
Sbjct: 76  FLHPCEDDIVCKCTTDENKVPYFNAPVYLENKEQIGKVDEIFGQLRDFYFSVKLSENMKA 135

Query: 126 TSYASGDKFYIDPAKLLPLARFLPQPKGQFAARGGGRGGGRGGGRGGRGGGGFRGRGGPR 185
           +S+    KFYIDP KLLPL RFLP+P G+     GG  GGRGGGRGG G GG RG GG R
Sbjct: 136 SSFKKLQKFYIDPYKLLPLQRFLPRPPGEKGPPRGGGRGGRGGGRGGGGRGGGRG-GGFR 195

Query: 186 GGRGGPPRG--GGRGGGFRGRG 197
           GGRGG   G  GGRGGGFRGRG
Sbjct: 196 GGRGGGGGGFRGGRGGGFRGRG 216

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BLAST of CmaCh07G011670.1 vs. TrEMBL
Match: A0A0A0KWF0_CUCSA (H/ACA ribonucleoprotein complex subunit 1-like protein 1 OS=Cucumis sativus GN=Csa_4G192120 PE=4 SV=1)

HSP 1 Score: 328.9 bits (842), Expect = 4.1e-87
Identity = 192/198 (96.97%), Postives = 193/198 (97.47%), Query Frame = 1


Query: 1   MRPPRGGGGFRGGRDGGFGGRGGGRGGGGFRGGGRFGGRGGGGFRDEGPPSEVVEVSTFL 60
           MRPPRGGGGFRGGRDGG   RGGGRGGGG RGGGRFGGRGGGGFRDEGPPSEVVEVSTFL
Sbjct: 1   MRPPRGGGGFRGGRDGG---RGGGRGGGG-RGGGRFGGRGGGGFRDEGPPSEVVEVSTFL 60

Query: 61  HACEGDAVTKLTNEKIPFFNAPIYLQNKTQIGKVDEIFGPINESYFSIKMMEGIVATSYA 120
           HACEGDAVTKLTNEKIPFFNAPIYLQNKTQIGKVDEIFGPINESYFSIKMMEGIVATSYA
Sbjct: 61  HACEGDAVTKLTNEKIPFFNAPIYLQNKTQIGKVDEIFGPINESYFSIKMMEGIVATSYA 120

Query: 121 SGDKFYIDPAKLLPLARFLPQPKGQFAARGGGRGGGRGGGRGGRGGGGFRGRGGPRGGRG 180
           SGDKFYIDPAKLLPLARFLPQPKGQF +RGGGRGGGRGGGRGGRGGGGFRGRGGPRGGRG
Sbjct: 121 SGDKFYIDPAKLLPLARFLPQPKGQFPSRGGGRGGGRGGGRGGRGGGGFRGRGGPRGGRG 180

Query: 181 GPPRGGGRGGGFRGRGRF 199
           GPPRGGGRGGGFRGRGRF
Sbjct: 181 GPPRGGGRGGGFRGRGRF 194

[Close]

BLAST of CmaCh07G011670.1 vs. TrEMBL
Match: A0A068V0Y6_COFCA (Uncharacterized protein OS=Coffea canephora GN=GSCOC_T00040646001 PE=4 SV=1)

HSP 1 Score: 285.4 bits (729), Expect = 5.2e-74
Identity = 178/202 (88.12%), Postives = 185/202 (91.58%), Query Frame = 1


Query: 1   MRPPRG--GGGFRGGRDGGFGGRGGGRGGGGFRGGGRFGGRGGGGFRDEGPPSEVVEVST 60
           MRPPRG  GGGFRGGRDGG GGR GGR  GGFRGGGRFGG G G FRDEGPP+EVVE+ST
Sbjct: 1   MRPPRGRGGGGFRGGRDGGRGGRDGGR--GGFRGGGRFGGGGRGTFRDEGPPAEVVEIST 60

Query: 61  FLHACEGDAVTKLTNEKIPFFNAPIYLQNKTQIGKVDEIFGPINESYFSIKMMEGIVATS 120
           FLHACEGDAVT LTNEKIP+FNAPIYLQNKTQIGKVDEIFGPINES+FSIKMMEGIVATS
Sbjct: 61  FLHACEGDAVTTLTNEKIPYFNAPIYLQNKTQIGKVDEIFGPINESFFSIKMMEGIVATS 120

Query: 121 YASGDKFYIDPAKLLPLARFLPQPKGQFAA--RGGGRGGGRGGGR-GGRGGGGFRGRGGP 180
           Y++GDKFYIDPAKLLPL+RFLPQPKGQ  A  RGGGRGGGRGGGR GGRGGGGFRGRG P
Sbjct: 121 YSAGDKFYIDPAKLLPLSRFLPQPKGQAQAGSRGGGRGGGRGGGRFGGRGGGGFRGRGAP 180

Query: 181 RGGRGGPPRGGGRGGGFRGRGR 198
           RGGRGG PRGGGRGGGFRGRGR
Sbjct: 181 RGGRGG-PRGGGRGGGFRGRGR 199

[Close]

BLAST of CmaCh07G011670.1 vs. TrEMBL
Match: A0A067L6M8_JATCU (Uncharacterized protein OS=Jatropha curcas GN=JCGZ_02724 PE=4 SV=1)

HSP 1 Score: 283.9 bits (725), Expect = 1.5e-73
Identity = 178/198 (89.90%), Postives = 182/198 (91.92%), Query Frame = 1


Query: 1   MRPPRGGGGFRGGRDGGFGGRGGGRGGGGFRGGGRFGGRGGGGFRDEGPPSEVVEVSTFL 60
           MRPPRGGG FRGGRDGG  G GGGRGG G  GGGRFGG G GGFRDEGPPSEVVEVSTFL
Sbjct: 1   MRPPRGGG-FRGGRDGG-RGFGGGRGGRGRGGGGRFGGGGPGGFRDEGPPSEVVEVSTFL 60

Query: 61  HACEGDAVTKLTNEKIPFFNAPIYLQNKTQIGKVDEIFGPINESYFSIKMMEGIVATSYA 120
           HACEGDAVTKLTNEKIP+FNAPI+LQNKTQIGKVDEIFGPINESYFSIKMMEGIVATSYA
Sbjct: 61  HACEGDAVTKLTNEKIPYFNAPIFLQNKTQIGKVDEIFGPINESYFSIKMMEGIVATSYA 120

Query: 121 SGDKFYIDPAKLLPLARFLPQPKGQFAARGGGRGGGRGGGR-GGRGGGGFRGRGGPRGGR 180
           +GDKF+IDP KLLPLARFLPQPKGQ  A  GGRGGGRGGGR GGRGGGGFRGRGGPRGGR
Sbjct: 121 TGDKFFIDPNKLLPLARFLPQPKGQAQAGRGGRGGGRGGGRGGGRGGGGFRGRGGPRGGR 180

Query: 181 GGPPRGGGRGGGFRGRGR 198
           GGPPR GGRGGGFRGRGR
Sbjct: 181 GGPPR-GGRGGGFRGRGR 195

[Close]

BLAST of CmaCh07G011670.1 vs. TrEMBL
Match: I1ML28_SOYBN (Uncharacterized protein OS=Glycine max GN=GLYMA_16G041400 PE=4 SV=1)

HSP 1 Score: 282.0 bits (720), Expect = 5.8e-73
Identity = 173/201 (86.07%), Postives = 180/201 (89.55%), Query Frame = 1


Query: 1   MRPPRGGG---GFRGGRDGGFGGRGGGRGGGGF-RGGGRFGGRGGGGFRDEGPPSEVVEV 60
           MRPPRGGG   GFRGGRDGG      GRG GGF RGGG FG  GGGG+RDEGPPSEVVEV
Sbjct: 1   MRPPRGGGRGGGFRGGRDGG------GRGRGGFGRGGGGFGRGGGGGYRDEGPPSEVVEV 60

Query: 61  STFLHACEGDAVTKLTNEKIPFFNAPIYLQNKTQIGKVDEIFGPINESYFSIKMMEGIVA 120
           S+F+HACEGDAVTKLTNEK+PFFNAPIYL+N TQIGKVDEIFGPINE+YFSIKMMEGIVA
Sbjct: 61  SSFMHACEGDAVTKLTNEKVPFFNAPIYLKNMTQIGKVDEIFGPINEAYFSIKMMEGIVA 120

Query: 121 TSYASGDKFYIDPAKLLPLARFLPQPKGQFAARGGGRGGGRGGGRGGRGGGGFRGRGGPR 180
           TSY+SGDKFYIDP KLLPLARFLPQPKGQ A RGGG GGGRGG RGGRGGGGFRGRG PR
Sbjct: 121 TSYSSGDKFYIDPRKLLPLARFLPQPKGQSAGRGGG-GGGRGGFRGGRGGGGFRGRGAPR 180

Query: 181 GGRGGPPRGGGRGGGFRGRGR 198
           GGRGGPPRGGGRGGGFRGRGR
Sbjct: 181 GGRGGPPRGGGRGGGFRGRGR 194

[Close]

BLAST of CmaCh07G011670.1 vs. TrEMBL
Match: A0A061F3J0_THECC (H/ACA ribonucleoprotein complex subunit 1-like protein 1 OS=Theobroma cacao GN=TCM_026465 PE=4 SV=1)

HSP 1 Score: 281.6 bits (719), Expect = 7.5e-73
Identity = 176/200 (88.00%), Postives = 182/200 (91.00%), Query Frame = 1


Query: 1   MRPPRGGGGFRGGRDGGFGGRGGGRGGGGFRGGGRFGGRGGGGFRDEGPPSEVVEVSTFL 60
           MRPPRGGGGFRGGRDGG  GRGGGRG     GGGR  GRGGGGFRDEGPP+EVVE+STFL
Sbjct: 1   MRPPRGGGGFRGGRDGG-RGRGGGRG-----GGGRGFGRGGGGFRDEGPPAEVVEISTFL 60

Query: 61  HACEGDAVTKLTNEKIPFFNAPIYLQNKTQIGKVDEIFGPINESYFSIKMMEGIVATSYA 120
           HACEGDAVTKLTNEKIP+FNAPIYLQNKTQIGKVDEIFGPINESYFSIKM+EGIVATSYA
Sbjct: 61  HACEGDAVTKLTNEKIPYFNAPIYLQNKTQIGKVDEIFGPINESYFSIKMLEGIVATSYA 120

Query: 121 SGDKFYIDPAKLLPLARFLPQPKGQF-AARGGGRGGGRGGGR-GGRGGGGFRGRGGPRGG 180
            GDKFYIDP+KLLPLA+FLPQPKGQ  A   GGRGGGRGGGR GGRGGGGFRGRG PRGG
Sbjct: 121 LGDKFYIDPSKLLPLAKFLPQPKGQSQAGARGGRGGGRGGGRGGGRGGGGFRGRGAPRGG 180

Query: 181 RGGPPRGGGRGGGFRGRGRF 199
           RGG PRGGGRGGGFRGRGRF
Sbjct: 181 RGG-PRGGGRGGGFRGRGRF 193

[Close]

BLAST of CmaCh07G011670.1 vs. TAIR10
Match: AT3G03920.1 (AT3G03920.1 H/ACA ribonucleoprotein complex, subunit Gar1/Naf1 protein)

HSP 1 Score: 231.9 bits (590), Expect = 3.5e-61
Identity = 161/204 (78.92%), Postives = 167/204 (81.86%), Query Frame = 1


Query: 1   MRPP-RGGGGFRG--GRDGGFGGRGGGRGGGGFRGGGRFGGRGG--GGFRDEGPPSEVVE 60
           MRPP RGGGGFRG  GRDGG GGR GG GG    GGGRFGG GG  GGFRDEGPPSEVVE
Sbjct: 1   MRPPMRGGGGFRGRGGRDGGGGGRFGGGGGRFGGGGGRFGGGGGRFGGFRDEGPPSEVVE 60

Query: 61  VSTFLHACEGDAVTKLTNEKIPFFNAPIYLQNKTQIGKVDEIFGPINESYFSIKMMEGIV 120
           V+TF+HACEGDAVTKL+ EKIP FNAPIYL+NKTQIGKVDEIFGPINES FSIKMMEGIV
Sbjct: 61  VATFVHACEGDAVTKLSQEKIPHFNAPIYLENKTQIGKVDEIFGPINESLFSIKMMEGIV 120

Query: 121 ATSYASGDKFYIDPAKLLPLARFLPQPKGQFAARGGGRGGGRGGGRG-GRGGGGFRGRGG 180
           ATSY+ GDKF+IDP KLLPLARFLPQPKGQ     GG G GRG  RG GRGG   RGRG 
Sbjct: 121 ATSYSPGDKFFIDPYKLLPLARFLPQPKGQSTGGRGGAGRGRGDSRGRGRGGSFSRGRGA 180

Query: 181 PRGGRGGPPRGGGRGGGFRGRGRF 199
           PRGGR  PPRGG R G FRGRGRF
Sbjct: 181 PRGGR-FPPRGGSR-GSFRGRGRF 202

[Close]

BLAST of CmaCh07G011670.1 vs. TAIR10
Match: AT5G18180.1 (AT5G18180.1 H/ACA ribonucleoprotein complex, subunit Gar1/Naf1 protein)

HSP 1 Score: 202.6 bits (514), Expect = 2.3e-52
Identity = 148/200 (74.00%), Postives = 154/200 (77.00%), Query Frame = 1


Query: 1   MRPPRGGGGF--RGGRDGGFGGRGGGRGGGGFRGGGRFGGRGGGGFRDEGPPSEVVEVST 60
           MRPPRGGG F  RGGRD   GGRG GRG    RG GRF    GGG  DEGPPSEVVEV+T
Sbjct: 1   MRPPRGGGSFRGRGGRDN--GGRGRGRG----RGRGRF----GGGNYDEGPPSEVVEVAT 60

Query: 61  FLHACEGDAVTKLTNEKIPFFNAPIYLQNKTQIGKVDEIFGPINESYFSIKMMEGIVATS 120
           FLHACEGDAV KL+N KIP FNAPIYLQNKTQIG+VDEIFGPINES FSIKM EGIVATS
Sbjct: 61  FLHACEGDAVFKLSNVKIPHFNAPIYLQNKTQIGRVDEIFGPINESLFSIKMREGIVATS 120

Query: 121 YASGDKFYIDPAKLLPLARFLPQPKGQFAARGGGRGGGRGGGRGGRGGGGFRGRGGPRG- 180
           Y+ GDKF+I P KLLPL+RFLPQPKGQ   RG GR   RG G   RG G FRGRG PRG 
Sbjct: 121 YSQGDKFFISPEKLLPLSRFLPQPKGQSGGRGEGRVPPRGRG-PPRGRGNFRGRGAPRGA 180

Query: 181 GRGGPPRGGGRGGGFRGRGR 198
            RG  PRGG R GGFRGRGR
Sbjct: 181 SRGFQPRGGPR-GGFRGRGR 188

[Close]

BLAST of CmaCh07G011670.1 vs. NCBI nr
Match: gi|449459600|ref|XP_004147534.1| (PREDICTED: putative H/ACA ribonucleoprotein complex subunit 1-like protein 1 [Cucumis sativus])

HSP 1 Score: 328.9 bits (842), Expect = 5.9e-87
Identity = 192/198 (96.97%), Postives = 193/198 (97.47%), Query Frame = 1


Query: 1   MRPPRGGGGFRGGRDGGFGGRGGGRGGGGFRGGGRFGGRGGGGFRDEGPPSEVVEVSTFL 60
           MRPPRGGGGFRGGRDGG   RGGGRGGGG RGGGRFGGRGGGGFRDEGPPSEVVEVSTFL
Sbjct: 1   MRPPRGGGGFRGGRDGG---RGGGRGGGG-RGGGRFGGRGGGGFRDEGPPSEVVEVSTFL 60

Query: 61  HACEGDAVTKLTNEKIPFFNAPIYLQNKTQIGKVDEIFGPINESYFSIKMMEGIVATSYA 120
           HACEGDAVTKLTNEKIPFFNAPIYLQNKTQIGKVDEIFGPINESYFSIKMMEGIVATSYA
Sbjct: 61  HACEGDAVTKLTNEKIPFFNAPIYLQNKTQIGKVDEIFGPINESYFSIKMMEGIVATSYA 120

Query: 121 SGDKFYIDPAKLLPLARFLPQPKGQFAARGGGRGGGRGGGRGGRGGGGFRGRGGPRGGRG 180
           SGDKFYIDPAKLLPLARFLPQPKGQF +RGGGRGGGRGGGRGGRGGGGFRGRGGPRGGRG
Sbjct: 121 SGDKFYIDPAKLLPLARFLPQPKGQFPSRGGGRGGGRGGGRGGRGGGGFRGRGGPRGGRG 180

Query: 181 GPPRGGGRGGGFRGRGRF 199
           GPPRGGGRGGGFRGRGRF
Sbjct: 181 GPPRGGGRGGGFRGRGRF 194

[Close]

BLAST of CmaCh07G011670.1 vs. NCBI nr
Match: gi|661882096|emb|CDP14321.1| (unnamed protein product [Coffea canephora])

HSP 1 Score: 285.4 bits (729), Expect = 7.5e-74
Identity = 178/202 (88.12%), Postives = 185/202 (91.58%), Query Frame = 1


Query: 1   MRPPRG--GGGFRGGRDGGFGGRGGGRGGGGFRGGGRFGGRGGGGFRDEGPPSEVVEVST 60
           MRPPRG  GGGFRGGRDGG GGR GGR  GGFRGGGRFGG G G FRDEGPP+EVVE+ST
Sbjct: 1   MRPPRGRGGGGFRGGRDGGRGGRDGGR--GGFRGGGRFGGGGRGTFRDEGPPAEVVEIST 60

Query: 61  FLHACEGDAVTKLTNEKIPFFNAPIYLQNKTQIGKVDEIFGPINESYFSIKMMEGIVATS 120
           FLHACEGDAVT LTNEKIP+FNAPIYLQNKTQIGKVDEIFGPINES+FSIKMMEGIVATS
Sbjct: 61  FLHACEGDAVTTLTNEKIPYFNAPIYLQNKTQIGKVDEIFGPINESFFSIKMMEGIVATS 120

Query: 121 YASGDKFYIDPAKLLPLARFLPQPKGQFAA--RGGGRGGGRGGGR-GGRGGGGFRGRGGP 180
           Y++GDKFYIDPAKLLPL+RFLPQPKGQ  A  RGGGRGGGRGGGR GGRGGGGFRGRG P
Sbjct: 121 YSAGDKFYIDPAKLLPLSRFLPQPKGQAQAGSRGGGRGGGRGGGRFGGRGGGGFRGRGAP 180

Query: 181 RGGRGGPPRGGGRGGGFRGRGR 198
           RGGRGG PRGGGRGGGFRGRGR
Sbjct: 181 RGGRGG-PRGGGRGGGFRGRGR 199

[Close]

BLAST of CmaCh07G011670.1 vs. NCBI nr
Match: gi|802585490|ref|XP_012070456.1| (PREDICTED: putative H/ACA ribonucleoprotein complex subunit 1-like protein 1 [Jatropha curcas])

HSP 1 Score: 283.9 bits (725), Expect = 2.2e-73
Identity = 178/198 (89.90%), Postives = 182/198 (91.92%), Query Frame = 1


Query: 1   MRPPRGGGGFRGGRDGGFGGRGGGRGGGGFRGGGRFGGRGGGGFRDEGPPSEVVEVSTFL 60
           MRPPRGGG FRGGRDGG  G GGGRGG G  GGGRFGG G GGFRDEGPPSEVVEVSTFL
Sbjct: 1   MRPPRGGG-FRGGRDGG-RGFGGGRGGRGRGGGGRFGGGGPGGFRDEGPPSEVVEVSTFL 60

Query: 61  HACEGDAVTKLTNEKIPFFNAPIYLQNKTQIGKVDEIFGPINESYFSIKMMEGIVATSYA 120
           HACEGDAVTKLTNEKIP+FNAPI+LQNKTQIGKVDEIFGPINESYFSIKMMEGIVATSYA
Sbjct: 61  HACEGDAVTKLTNEKIPYFNAPIFLQNKTQIGKVDEIFGPINESYFSIKMMEGIVATSYA 120

Query: 121 SGDKFYIDPAKLLPLARFLPQPKGQFAARGGGRGGGRGGGR-GGRGGGGFRGRGGPRGGR 180
           +GDKF+IDP KLLPLARFLPQPKGQ  A  GGRGGGRGGGR GGRGGGGFRGRGGPRGGR
Sbjct: 121 TGDKFFIDPNKLLPLARFLPQPKGQAQAGRGGRGGGRGGGRGGGRGGGGFRGRGGPRGGR 180

Query: 181 GGPPRGGGRGGGFRGRGR 198
           GGPPR GGRGGGFRGRGR
Sbjct: 181 GGPPR-GGRGGGFRGRGR 195

[Close]

BLAST of CmaCh07G011670.1 vs. NCBI nr
Match: gi|502107112|ref|XP_004493161.1| (PREDICTED: putative H/ACA ribonucleoprotein complex subunit 1-like protein 1 [Cicer arietinum])

HSP 1 Score: 282.0 bits (720), Expect = 8.3e-73
Identity = 179/203 (88.18%), Postives = 182/203 (89.66%), Query Frame = 1


Query: 1   MRPPRGGG---GFRGGRDGGFGGRGGGRGGGGFRGGGRFGG-RGGGGFRDEGPPSEVVEV 60
           MRPPRGGG   GFRGGRDGGF  RGG  GG   RGGGRFGG RGGGGFRDEGPPSEVVEV
Sbjct: 1   MRPPRGGGRGGGFRGGRDGGF--RGGRDGGFRGRGGGRFGGGRGGGGFRDEGPPSEVVEV 60

Query: 61  STFLHACEGDAVTKLTNEKIPFFNAPIYLQNKTQIGKVDEIFGPINESYFSIKMMEGIVA 120
           STF+HACEGDAVTKLTNEKIPFFNAPIYLQN TQIGKVDEIFGPINESYFSIKMMEGIVA
Sbjct: 61  STFMHACEGDAVTKLTNEKIPFFNAPIYLQNMTQIGKVDEIFGPINESYFSIKMMEGIVA 120

Query: 121 TSYASGDKFYIDPAKLLPLARFLPQPKGQFAARG-GGRGGGRGGGRGGRGGGGFRGRGGP 180
           TSY++GDKFYIDP KLLPLARFLPQPKGQ  A G GG GGGRG GRGGRGGGGFRGRG P
Sbjct: 121 TSYSAGDKFYIDPRKLLPLARFLPQPKGQAQAGGRGGGGGGRGFGRGGRGGGGFRGRGPP 180

Query: 181 RGGRGGPPRGGGRGGGFRGRGRF 199
           RGGR GPPRGGGRGGGFRGRGRF
Sbjct: 181 RGGR-GPPRGGGRGGGFRGRGRF 200

[Close]

BLAST of CmaCh07G011670.1 vs. NCBI nr
Match: gi|356560951|ref|XP_003548749.1| (PREDICTED: putative H/ACA ribonucleoprotein complex subunit 1-like protein 1 [Glycine max])

HSP 1 Score: 282.0 bits (720), Expect = 8.3e-73
Identity = 173/201 (86.07%), Postives = 180/201 (89.55%), Query Frame = 1


Query: 1   MRPPRGGG---GFRGGRDGGFGGRGGGRGGGGF-RGGGRFGGRGGGGFRDEGPPSEVVEV 60
           MRPPRGGG   GFRGGRDGG      GRG GGF RGGG FG  GGGG+RDEGPPSEVVEV
Sbjct: 1   MRPPRGGGRGGGFRGGRDGG------GRGRGGFGRGGGGFGRGGGGGYRDEGPPSEVVEV 60

Query: 61  STFLHACEGDAVTKLTNEKIPFFNAPIYLQNKTQIGKVDEIFGPINESYFSIKMMEGIVA 120
           S+F+HACEGDAVTKLTNEK+PFFNAPIYL+N TQIGKVDEIFGPINE+YFSIKMMEGIVA
Sbjct: 61  SSFMHACEGDAVTKLTNEKVPFFNAPIYLKNMTQIGKVDEIFGPINEAYFSIKMMEGIVA 120

Query: 121 TSYASGDKFYIDPAKLLPLARFLPQPKGQFAARGGGRGGGRGGGRGGRGGGGFRGRGGPR 180
           TSY+SGDKFYIDP KLLPLARFLPQPKGQ A RGGG GGGRGG RGGRGGGGFRGRG PR
Sbjct: 121 TSYSSGDKFYIDPRKLLPLARFLPQPKGQSAGRGGG-GGGRGGFRGGRGGGGFRGRGAPR 180

Query: 181 GGRGGPPRGGGRGGGFRGRGR 198
           GGRGGPPRGGGRGGGFRGRGR
Sbjct: 181 GGRGGPPRGGGRGGGFRGRGR 194

The following BLAST results are available for this feature:

BLAST of CmaCh07G011670.1 vs. Swiss-Prot


Match Name	E-value	Identity	Description
NLAL1_ARATH	6.2e-60	78.92	Putative H/ACA ribonucleoprotein complex subunit 1-like protein 1 OS=Arabidopsis...	[more]
NLAL2_ARATH	4.0e-51	74.00	H/ACA ribonucleoprotein complex subunit 1-like protein 2 OS=Arabidopsis thaliana...	[more]
GAR1_CHAGB	6.0e-39	58.49	H/ACA ribonucleoprotein complex subunit 1 OS=Chaetomium globosum (strain ATCC 62...	[more]
GAR1_XENTR	1.7e-38	64.88	H/ACA ribonucleoprotein complex subunit 1 OS=Xenopus tropicalis GN=gar1 PE=2 SV=...	[more]
GAR1_HUMAN	5.6e-37	61.88	H/ACA ribonucleoprotein complex subunit 1 OS=Homo sapiens GN=GAR1 PE=1 SV=1	[more]

BLAST of CmaCh07G011670.1 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0KWF0_CUCSA	4.1e-87	96.97	H/ACA ribonucleoprotein complex subunit 1-like protein 1 OS=Cucumis sativus GN=C...	[more]
A0A068V0Y6_COFCA	5.2e-74	88.12	Uncharacterized protein OS=Coffea canephora GN=GSCOC_T00040646001 PE=4 SV=1	[more]
A0A067L6M8_JATCU	1.5e-73	89.90	Uncharacterized protein OS=Jatropha curcas GN=JCGZ_02724 PE=4 SV=1	[more]
I1ML28_SOYBN	5.8e-73	86.07	Uncharacterized protein OS=Glycine max GN=GLYMA_16G041400 PE=4 SV=1	[more]
A0A061F3J0_THECC	7.5e-73	88.00	H/ACA ribonucleoprotein complex subunit 1-like protein 1 OS=Theobroma cacao GN=T...	[more]

BLAST of CmaCh07G011670.1 vs. TAIR10


Match Name	E-value	Identity	Description
AT3G03920.1	3.5e-61	78.92	H/ACA ribonucleoprotein complex, subunit Gar1/Naf1 protein	[more]
AT5G18180.1	2.3e-52	74.00	H/ACA ribonucleoprotein complex, subunit Gar1/Naf1 protein	[more]

BLAST of CmaCh07G011670.1 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|449459600\|ref\|XP_004147534.1\|	5.9e-87	96.97	PREDICTED: putative H/ACA ribonucleoprotein complex subunit 1-like protein 1 [Cu...	[more]
gi\|661882096\|emb\|CDP14321.1\|	7.5e-74	88.12	unnamed protein product [Coffea canephora]	[more]
gi\|802585490\|ref\|XP_012070456.1\|	2.2e-73	89.90	PREDICTED: putative H/ACA ribonucleoprotein complex subunit 1-like protein 1 [Ja...	[more]
gi\|502107112\|ref\|XP_004493161.1\|	8.3e-73	88.18	PREDICTED: putative H/ACA ribonucleoprotein complex subunit 1-like protein 1 [Ci...	[more]
gi\|356560951\|ref\|XP_003548749.1\|	8.3e-73	86.07	PREDICTED: putative H/ACA ribonucleoprotein complex subunit 1-like protein 1 [Gl...	[more]

Annotated Terms

The following terms have been associated with this mRNA:

Vocabulary: **INTERPRO**
Term	Definition
IPR007504	H/ACA_rnp_Gar1/Naf1
IPR009000	Transl_B-barrel_sf
IPR021154	H/ACA_rnp_Gar1

Vocabulary: **Biological Process**
Term	Definition
GO:0001522	pseudouridine synthesis
GO:0042254	ribosome biogenesis

Vocabulary: **Cellular Component**
Term	Definition
GO:0031429	box H/ACA snoRNP complex

GO Annotation

GO Assignments

This mRNA is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0001522	pseudouridine synthesis
biological_process	GO:0042254	ribosome biogenesis
cellular_component	GO:0031429	box H/ACA snoRNP complex
cellular_component	GO:0019013	viral nucleocapsid
molecular_function	GO:0003674	molecular_function

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
CmaCh07G011670	CmaCh07G011670	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
CmaCh07G011670.1	CmaCh07G011670.1-protein	polypeptide

The following three_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
CmaCh07G011670.1.three_prime_UTR.1	CmaCh07G011670.1.three_prime_UTR.1	three_prime_UTR

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
CmaCh07G011670.1.CDS.4	CmaCh07G011670.1.CDS.4	CDS
CmaCh07G011670.1.CDS.3	CmaCh07G011670.1.CDS.3	CDS
CmaCh07G011670.1.CDS.2	CmaCh07G011670.1.CDS.2	CDS
CmaCh07G011670.1.CDS.1	CmaCh07G011670.1.CDS.1	CDS

The following five_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
CmaCh07G011670.1.five_prime_UTR.1	CmaCh07G011670.1.five_prime_UTR.1	five_prime_UTR

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
CmaCh07G011670.1.exon.4	CmaCh07G011670.1.exon.4	exon
CmaCh07G011670.1.exon.3	CmaCh07G011670.1.exon.3	exon
CmaCh07G011670.1.exon.2	CmaCh07G011670.1.exon.2	exon
CmaCh07G011670.1.exon.1	CmaCh07G011670.1.exon.1	exon

InterPro

Analysis Name: InterPro Annotations of Cucurbita maxima
Date Performed: 2017-05-20


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR007504	H/ACA ribonucleoprotein complex, subunit Gar1/Naf1	PFAM	PF04410	Gar1	coord: 45..144 score: 1.3
IPR009000	Translation protein, beta-barrel domain	unknown	SSF50447	Translation proteins	coord: 54..128 score: 1.98
IPR021154	H/ACA ribonucleoprotein complex, subunit Gar1	PRODOM	PD020235		coord: 55..138 score: 4.0
IPR021154	H/ACA ribonucleoprotein complex, subunit Gar1	PANTHER	PTHR23237	NUCLEOLAR PROTEIN FAMILY A MEMBER 1 SNORNP PROTEIN GAR1	coord: 1..198 score: 6.7
None	No IPR available	GENE3D	G3DSA:2.40.10.230		coord: 48..129 score: 1.9