CmaCh07G008290.1 (mRNA) Cucurbita maxima (Rimu)
The following sequences are available for this feature:
Legend: exonCDS Hold the cursor over a type above to highlight its positions in the sequence below.ATGGCTGATTCCGCCGCACAAGAAACCTACGCAGCGCCGTCGTCACCTGCCTCGATTCTCAACCGCAGAACCTCGATTCCTTCCTCCGCTATCATGCCCCCACCAAACGTCGCCGTTTCCCCTCCTCTGTCCTCTCCGATCGACTTGAGGATCCTCTCCTCCAAATCCTCTTTTCAATCCTACACCTCTCTCAAGGACATCCTCCCCTCCGCCGCCTTCAACTCTCCCACTGCCGCATCTCCGGCCAACTCCGGCTACGAAATTTCGATCCGCAACCGCCTCGTTAAGCAAGCCGCTTGGGCTTATCTCCAACCTATGTCCGCTTCTTCCTATTCCACCGGCTCAAATATCTTCCACCGTTTCTGGCTCCGATTCTCCGCCGCGAATCCGATCGCTAATAGTCTTGGATTCATCAGAGGTAGTATCATTCCGGCCATAGTCCGAGTCATTCGGTTCTGCATTTGCTTGTGA ATGGCTGATTCCGCCGCACAAGAAACCTACGCAGCGCCGTCGTCACCTGCCTCGATTCTCAACCGCAGAACCTCGATTCCTTCCTCCGCTATCATGCCCCCACCAAACGTCGCCGTTTCCCCTCCTCTGTCCTCTCCGATCGACTTGAGGATCCTCTCCTCCAAATCCTCTTTTCAATCCTACACCTCTCTCAAGGACATCCTCCCCTCCGCCGCCTTCAACTCTCCCACTGCCGCATCTCCGGCCAACTCCGGCTACGAAATTTCGATCCGCAACCGCCTCGTTAAGCAAGCCGCTTGGGCTTATCTCCAACCTATGTCCGCTTCTTCCTATTCCACCGGCTCAAATATCTTCCACCGTTTCTGGCTCCGATTCTCCGCCGCGAATCCGATCGCTAATAGTCTTGGATTCATCAGAGGTAGTATCATTCCGGCCATAGTCCGAGTCATTCGGTTCTGCATTTGCTTGTGA ATGGCTGATTCCGCCGCACAAGAAACCTACGCAGCGCCGTCGTCACCTGCCTCGATTCTCAACCGCAGAACCTCGATTCCTTCCTCCGCTATCATGCCCCCACCAAACGTCGCCGTTTCCCCTCCTCTGTCCTCTCCGATCGACTTGAGGATCCTCTCCTCCAAATCCTCTTTTCAATCCTACACCTCTCTCAAGGACATCCTCCCCTCCGCCGCCTTCAACTCTCCCACTGCCGCATCTCCGGCCAACTCCGGCTACGAAATTTCGATCCGCAACCGCCTCGTTAAGCAAGCCGCTTGGGCTTATCTCCAACCTATGTCCGCTTCTTCCTATTCCACCGGCTCAAATATCTTCCACCGTTTCTGGCTCCGATTCTCCGCCGCGAATCCGATCGCTAATAGTCTTGGATTCATCAGAGGTAGTATCATTCCGGCCATAGTCCGAGTCATTCGGTTCTGCATTTGCTTGTGA MADSAAQETYAAPSSPASILNRRTSIPSSAIMPPPNVAVSPPLSSPIDLRILSSKSSFQSYTSLKDILPSAAFNSPTAASPANSGYEISIRNRLVKQAAWAYLQPMSASSYSTGSNIFHRFWLRFSAANPIANSLGFIRGSIIPAIVRVIRFCICL
BLAST of CmaCh07G008290.1 vs. TrEMBL
Match: A0A0A0KHJ9_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_6G454420 PE=4 SV=1) HSP 1 Score: 189.9 bits (481), Expect = 2.4e-45 Identity = 114/161 (70.81%), Postives = 121/161 (75.16%), Query Frame = 1
BLAST of CmaCh07G008290.1 vs. TrEMBL
Match: A0A0D2RBJ9_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_002G236200 PE=4 SV=1) HSP 1 Score: 129.8 bits (325), Expect = 2.9e-27 Identity = 80/152 (52.63%), Postives = 100/152 (65.79%), Query Frame = 1
BLAST of CmaCh07G008290.1 vs. TrEMBL
Match: A0A061EUC6_THECC (COPII coat assembly protein SEC16, putative OS=Theobroma cacao GN=TCM_022851 PE=4 SV=1) HSP 1 Score: 125.9 bits (315), Expect = 4.2e-26 Identity = 82/149 (55.03%), Postives = 98/149 (65.77%), Query Frame = 1
BLAST of CmaCh07G008290.1 vs. TrEMBL
Match: U5G888_POPTR (Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0006s22160g PE=4 SV=1) HSP 1 Score: 113.6 bits (283), Expect = 2.1e-22 Identity = 73/144 (50.69%), Postives = 93/144 (64.58%), Query Frame = 1
BLAST of CmaCh07G008290.1 vs. TrEMBL
Match: W9RPH0_9ROSA (Uncharacterized protein OS=Morus notabilis GN=L484_018844 PE=4 SV=1) HSP 1 Score: 113.2 bits (282), Expect = 2.8e-22 Identity = 65/128 (50.78%), Postives = 86/128 (67.19%), Query Frame = 1
BLAST of CmaCh07G008290.1 vs. TAIR10
Match: AT5G06280.1 (AT5G06280.1 unknown protein) HSP 1 Score: 70.1 bits (170), Expect = 1.4e-12 Identity = 57/128 (44.53%), Postives = 77/128 (60.16%), Query Frame = 1
BLAST of CmaCh07G008290.1 vs. TAIR10
Match: AT3G52520.1 (AT3G52520.1 unknown protein) HSP 1 Score: 52.4 bits (124), Expect = 3.0e-07 Identity = 38/82 (46.34%), Postives = 51/82 (62.20%), Query Frame = 1
BLAST of CmaCh07G008290.1 vs. NCBI nr
Match: gi|778717611|ref|XP_011657724.1| (PREDICTED: early nodulin-20-like [Cucumis sativus]) HSP 1 Score: 189.9 bits (481), Expect = 3.4e-45 Identity = 114/161 (70.81%), Postives = 121/161 (75.16%), Query Frame = 1
BLAST of CmaCh07G008290.1 vs. NCBI nr
Match: gi|659125286|ref|XP_008462609.1| (PREDICTED: F-box only protein 11 [Cucumis melo]) HSP 1 Score: 189.5 bits (480), Expect = 4.4e-45 Identity = 115/160 (71.88%), Postives = 120/160 (75.00%), Query Frame = 1
BLAST of CmaCh07G008290.1 vs. NCBI nr
Match: gi|823136734|ref|XP_012468134.1| (PREDICTED: uncharacterized protein LOC105786304 [Gossypium raimondii]) HSP 1 Score: 129.8 bits (325), Expect = 4.2e-27 Identity = 80/152 (52.63%), Postives = 100/152 (65.79%), Query Frame = 1
BLAST of CmaCh07G008290.1 vs. NCBI nr
Match: gi|590632737|ref|XP_007027924.1| (COPII coat assembly protein SEC16, putative [Theobroma cacao]) HSP 1 Score: 125.9 bits (315), Expect = 6.0e-26 Identity = 82/149 (55.03%), Postives = 98/149 (65.77%), Query Frame = 1
BLAST of CmaCh07G008290.1 vs. NCBI nr
Match: gi|1009161360|ref|XP_015898854.1| (PREDICTED: uncharacterized protein LOC107432265 [Ziziphus jujuba]) HSP 1 Score: 122.9 bits (307), Expect = 5.1e-25 Identity = 81/172 (47.09%), Postives = 104/172 (60.47%), Query Frame = 1
The following BLAST results are available for this feature:
The following terms have been associated with this mRNA:
GO Assignments
This mRNA is annotated with the following GO terms.
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following exon feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Analysis Name: InterPro Annotations of Cucurbita maxima
Date Performed: 2017-05-20
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