CmaCh07G008290.1 (mRNA) Cucurbita maxima (Rimu)

NameCmaCh07G008290.1
TypemRNA
OrganismCucurbita maxima (Cucurbita maxima (Rimu))
DescriptionCOPII coat assembly protein SEC16, putative
LocationCma_Chr07 : 3854995 .. 3855465 (+)
Sequence length471
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGCTGATTCCGCCGCACAAGAAACCTACGCAGCGCCGTCGTCACCTGCCTCGATTCTCAACCGCAGAACCTCGATTCCTTCCTCCGCTATCATGCCCCCACCAAACGTCGCCGTTTCCCCTCCTCTGTCCTCTCCGATCGACTTGAGGATCCTCTCCTCCAAATCCTCTTTTCAATCCTACACCTCTCTCAAGGACATCCTCCCCTCCGCCGCCTTCAACTCTCCCACTGCCGCATCTCCGGCCAACTCCGGCTACGAAATTTCGATCCGCAACCGCCTCGTTAAGCAAGCCGCTTGGGCTTATCTCCAACCTATGTCCGCTTCTTCCTATTCCACCGGCTCAAATATCTTCCACCGTTTCTGGCTCCGATTCTCCGCCGCGAATCCGATCGCTAATAGTCTTGGATTCATCAGAGGTAGTATCATTCCGGCCATAGTCCGAGTCATTCGGTTCTGCATTTGCTTGTGA

mRNA sequence

ATGGCTGATTCCGCCGCACAAGAAACCTACGCAGCGCCGTCGTCACCTGCCTCGATTCTCAACCGCAGAACCTCGATTCCTTCCTCCGCTATCATGCCCCCACCAAACGTCGCCGTTTCCCCTCCTCTGTCCTCTCCGATCGACTTGAGGATCCTCTCCTCCAAATCCTCTTTTCAATCCTACACCTCTCTCAAGGACATCCTCCCCTCCGCCGCCTTCAACTCTCCCACTGCCGCATCTCCGGCCAACTCCGGCTACGAAATTTCGATCCGCAACCGCCTCGTTAAGCAAGCCGCTTGGGCTTATCTCCAACCTATGTCCGCTTCTTCCTATTCCACCGGCTCAAATATCTTCCACCGTTTCTGGCTCCGATTCTCCGCCGCGAATCCGATCGCTAATAGTCTTGGATTCATCAGAGGTAGTATCATTCCGGCCATAGTCCGAGTCATTCGGTTCTGCATTTGCTTGTGA

Coding sequence (CDS)

ATGGCTGATTCCGCCGCACAAGAAACCTACGCAGCGCCGTCGTCACCTGCCTCGATTCTCAACCGCAGAACCTCGATTCCTTCCTCCGCTATCATGCCCCCACCAAACGTCGCCGTTTCCCCTCCTCTGTCCTCTCCGATCGACTTGAGGATCCTCTCCTCCAAATCCTCTTTTCAATCCTACACCTCTCTCAAGGACATCCTCCCCTCCGCCGCCTTCAACTCTCCCACTGCCGCATCTCCGGCCAACTCCGGCTACGAAATTTCGATCCGCAACCGCCTCGTTAAGCAAGCCGCTTGGGCTTATCTCCAACCTATGTCCGCTTCTTCCTATTCCACCGGCTCAAATATCTTCCACCGTTTCTGGCTCCGATTCTCCGCCGCGAATCCGATCGCTAATAGTCTTGGATTCATCAGAGGTAGTATCATTCCGGCCATAGTCCGAGTCATTCGGTTCTGCATTTGCTTGTGA

Protein sequence

MADSAAQETYAAPSSPASILNRRTSIPSSAIMPPPNVAVSPPLSSPIDLRILSSKSSFQSYTSLKDILPSAAFNSPTAASPANSGYEISIRNRLVKQAAWAYLQPMSASSYSTGSNIFHRFWLRFSAANPIANSLGFIRGSIIPAIVRVIRFCICL
BLAST of CmaCh07G008290.1 vs. TrEMBL
Match: A0A0A0KHJ9_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_6G454420 PE=4 SV=1)

HSP 1 Score: 189.9 bits (481), Expect = 2.4e-45
Identity = 114/161 (70.81%), Postives = 121/161 (75.16%), Query Frame = 1

Query: 1   MADSAAQETYAAPSSPASILNRRTSIPSSAIMPPPNVAVSPPLS-SPIDLRILSSKSSFQ 60
           MA S+AQ TY  PS     L R T +PSS  MPPPN AVSPP   SPI+L +LS KSS Q
Sbjct: 1   MAKSSAQLTYPPPSPS---LRRTTFLPSSP-MPPPNPAVSPPPPPSPINLALLSFKSSSQ 60

Query: 61  SYTSLKDILPSA-----AFNSPTAASPANSGYEISIRNRLVKQAAWAYLQPMSASSYSTG 120
           SYTSLKDILPSA     A NSPTAASPANS YEISIRNRLVKQAAWAYLQPMSASSYS G
Sbjct: 61  SYTSLKDILPSASASAAAVNSPTAASPANSPYEISIRNRLVKQAAWAYLQPMSASSYSAG 120

Query: 121 SNIFHRFWLRFSAANPIANSLGFIRGSIIPAIVRVIRFCIC 156
            N FHRF LRFS  NPI +  GFIR SI+PAI+R  RFCIC
Sbjct: 121 PNFFHRFCLRFSTGNPIYSCFGFIRSSIVPAIIRAFRFCIC 157

BLAST of CmaCh07G008290.1 vs. TrEMBL
Match: A0A0D2RBJ9_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_002G236200 PE=4 SV=1)

HSP 1 Score: 129.8 bits (325), Expect = 2.9e-27
Identity = 80/152 (52.63%), Postives = 100/152 (65.79%), Query Frame = 1

Query: 15  SPASILNRRTSIPSSAIMPPPNVAVSP-PLSS-------------PIDLRILSSKSSFQS 74
           SP S + RR SI +   +P     ++P PL +             P+DL ++S K+SF S
Sbjct: 8   SPTSTIRRRNSITTPVQIPTKLTLLTPKPLQTATSLSSGSATAPLPLDLELISLKASFAS 67

Query: 75  YTSLKDILPS--AAFNSPTAASPA-NSGYEISIRNRLVKQAAWAYLQPMSASSYSTGSNI 134
           YTSLKDILPS   A NSPTAA  A NSGYEISIRNRLVKQAAWAYLQPMSAS  S+G++ 
Sbjct: 68  YTSLKDILPSPAVAVNSPTAAGSATNSGYEISIRNRLVKQAAWAYLQPMSASPDSSGTHF 127

Query: 135 FHRFWLRFSAANPIANSLGFIRGSIIPAIVRV 150
           F RFWLR S+ NP ++ L FI   ++P + R+
Sbjct: 128 FRRFWLRLSSQNPFSSCLRFIHLKLLPRLTRL 159

BLAST of CmaCh07G008290.1 vs. TrEMBL
Match: A0A061EUC6_THECC (COPII coat assembly protein SEC16, putative OS=Theobroma cacao GN=TCM_022851 PE=4 SV=1)

HSP 1 Score: 125.9 bits (315), Expect = 4.2e-26
Identity = 82/149 (55.03%), Postives = 98/149 (65.77%), Query Frame = 1

Query: 16  PASILNRRTSIPSSAIMPPPNVAVSP-PL------------SSPIDLRILSSKSSFQSYT 75
           P S L RR SI S   +P     ++P PL            SSP+DL ++S K+S  SYT
Sbjct: 66  PLSTLGRRNSISSPVQLPRRLTLLTPKPLQTANSLPNGSASSSPLDLELISLKTSLASYT 125

Query: 76  SLKDILPSAA--FNSPTAASPA-NSGYEISIRNRLVKQAAWAYLQPMSASSYSTGSNIFH 135
           SLKDILPS+A   NSPTAA  A NSGYEISIRNRLVKQAAWAYLQPMSAS  S+G + F 
Sbjct: 126 SLKDILPSSAVAINSPTAAGSATNSGYEISIRNRLVKQAAWAYLQPMSASPDSSGPHFFR 185

Query: 136 RFWLRFSAANPIANSLGFIRGSIIPAIVR 149
           R WLRFS+ NPI++ L F   + I + +R
Sbjct: 186 RIWLRFSSQNPISSCLRFSSQNPISSCLR 214

BLAST of CmaCh07G008290.1 vs. TrEMBL
Match: U5G888_POPTR (Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0006s22160g PE=4 SV=1)

HSP 1 Score: 113.6 bits (283), Expect = 2.1e-22
Identity = 73/144 (50.69%), Postives = 93/144 (64.58%), Query Frame = 1

Query: 15  SPASILNRRTSIPSSAIMP-----------PPNVAVSPPLSSPIDLRILSSKSSFQSYTS 74
           S  + L RR SI  S ++P           PP++ ++  + SP+D+ +LS KSS  SYTS
Sbjct: 6   SQTATLRRRNSIAMSLVIPTKLSLHPSSILPPSL-LNGTILSPLDISLLSLKSS-SSYTS 65

Query: 75  LKDILPSAAFNSPTAA-SPANSGYEISIRNRLVKQAAWAYLQPMSASSYSTGSNIFHRFW 134
           LKD+LPSA  NSPT++ S   S YEISIRNRLVK AAWAYLQPMS S+ S+G +   R W
Sbjct: 66  LKDLLPSATVNSPTSSNSTTTSSYEISIRNRLVKHAAWAYLQPMSPSADSSG-HFLRRVW 125

Query: 135 LRFSAANPIANSLGFIRGSIIPAI 147
           LRFS  NPI     F+ G +IP+I
Sbjct: 126 LRFSTKNPITACFRFLSGHVIPSI 146

BLAST of CmaCh07G008290.1 vs. TrEMBL
Match: W9RPH0_9ROSA (Uncharacterized protein OS=Morus notabilis GN=L484_018844 PE=4 SV=1)

HSP 1 Score: 113.2 bits (282), Expect = 2.8e-22
Identity = 65/128 (50.78%), Postives = 86/128 (67.19%), Query Frame = 1

Query: 29  SAIMPPPNVAVSPPLSSPIDLRILSSKSSFQSYTSLKDILPSA------AFNSPTAASPA 88
           SA  P  N AV+ P   P++  +++ K++  SYTSLKD+LPS+        NSPT+AS A
Sbjct: 39  SASFPIENGAVAVPPPPPLNFELIALKTTSSSYTSLKDLLPSSPSAGGGGINSPTSAS-A 98

Query: 89  NSGYEISIRNRLVKQAAWAYLQPMSASSYSTGSNIFHRFWLRFSAANPIANSLGFIRGSI 148
           ++  EISIRNRLVKQAAWAYLQPMS+S  STG     R WLRFS+ N +A+ L FI   +
Sbjct: 99  SAASEISIRNRLVKQAAWAYLQPMSSSPSSTGPRFLRRLWLRFSSQNVVASCLAFINSHV 158

Query: 149 IPAIVRVI 151
           IP++ R +
Sbjct: 159 IPSLSRAV 165

BLAST of CmaCh07G008290.1 vs. TAIR10
Match: AT5G06280.1 (AT5G06280.1 unknown protein)

HSP 1 Score: 70.1 bits (170), Expect = 1.4e-12
Identity = 57/128 (44.53%), Postives = 77/128 (60.16%), Query Frame = 1

Query: 15  SPASILNRRTSIPSSAIMPPPNV----AVSPPLSSPIDLRILSSK-SSFQSYTSLKDILP 74
           SPA+ L R  SI +   + PP V    A +PP  S  D  ++S K SSF +YTSL+DI+ 
Sbjct: 8   SPATQLRRTKSISNMTTLTPPEVPFDIASTPP--SSFDYELISVKPSSFVAYTSLRDIIS 67

Query: 75  S---AAFNSPT---AASP--ANSGYEISIRNRLVKQAAWAYLQP--MSASSYSTGSNIFH 128
           S   ++ N P+   + SP  + +  +ISIRNRLVKQAA +YLQP  +++S  S GS  F 
Sbjct: 68  SPINSSLNLPSINGSCSPVISTAAGDISIRNRLVKQAALSYLQPTVLTSSDDSAGSQFFR 127

BLAST of CmaCh07G008290.1 vs. TAIR10
Match: AT3G52520.1 (AT3G52520.1 unknown protein)

HSP 1 Score: 52.4 bits (124), Expect = 3.0e-07
Identity = 38/82 (46.34%), Postives = 51/82 (62.20%), Query Frame = 1

Query: 43  LSSPIDLRILSSKSSFQS----YTSLKDILPSAA--FNSPT---AASPANSGYEISIRNR 102
           +S  +DL ++S   S +     YTSLKDILPS++   +SP    A + A SG  I+IRNR
Sbjct: 19  VSQTLDLELVSVNKSSEDPLPCYTSLKDILPSSSTTVDSPAISFAVASAVSGPTITIRNR 78

Query: 103 LVKQAAWAYLQPMSASSYSTGS 116
           LVKQAA +YLQP + +  S  S
Sbjct: 79  LVKQAACSYLQPSTPTPSSNPS 100

BLAST of CmaCh07G008290.1 vs. NCBI nr
Match: gi|778717611|ref|XP_011657724.1| (PREDICTED: early nodulin-20-like [Cucumis sativus])

HSP 1 Score: 189.9 bits (481), Expect = 3.4e-45
Identity = 114/161 (70.81%), Postives = 121/161 (75.16%), Query Frame = 1

Query: 1   MADSAAQETYAAPSSPASILNRRTSIPSSAIMPPPNVAVSPPLS-SPIDLRILSSKSSFQ 60
           MA S+AQ TY  PS     L R T +PSS  MPPPN AVSPP   SPI+L +LS KSS Q
Sbjct: 1   MAKSSAQLTYPPPSPS---LRRTTFLPSSP-MPPPNPAVSPPPPPSPINLALLSFKSSSQ 60

Query: 61  SYTSLKDILPSA-----AFNSPTAASPANSGYEISIRNRLVKQAAWAYLQPMSASSYSTG 120
           SYTSLKDILPSA     A NSPTAASPANS YEISIRNRLVKQAAWAYLQPMSASSYS G
Sbjct: 61  SYTSLKDILPSASASAAAVNSPTAASPANSPYEISIRNRLVKQAAWAYLQPMSASSYSAG 120

Query: 121 SNIFHRFWLRFSAANPIANSLGFIRGSIIPAIVRVIRFCIC 156
            N FHRF LRFS  NPI +  GFIR SI+PAI+R  RFCIC
Sbjct: 121 PNFFHRFCLRFSTGNPIYSCFGFIRSSIVPAIIRAFRFCIC 157

BLAST of CmaCh07G008290.1 vs. NCBI nr
Match: gi|659125286|ref|XP_008462609.1| (PREDICTED: F-box only protein 11 [Cucumis melo])

HSP 1 Score: 189.5 bits (480), Expect = 4.4e-45
Identity = 115/160 (71.88%), Postives = 120/160 (75.00%), Query Frame = 1

Query: 1   MADSAAQETYAAPSSPASILNRRTSIPSSAIMPPPNVAVSPPLS-SPIDLRILSSKSSFQ 60
           MA SAAQ TY  PS     L R T +PSS  MPPPN  VSPP   SPI+L +LS KSS Q
Sbjct: 1   MAKSAAQLTYPPPSPS---LRRTTFLPSSP-MPPPNADVSPPPPPSPINLALLSFKSSSQ 60

Query: 61  SYTSLKDILPSA---AFNSPTAASPANSGYEISIRNRLVKQAAWAYLQPMSASSYSTGSN 120
           SYTSLKDILPSA   A NSPTAASPANS YEISIRNRLVKQAAWAYLQPMSASSYS G N
Sbjct: 61  SYTSLKDILPSASAAAVNSPTAASPANSPYEISIRNRLVKQAAWAYLQPMSASSYSAGPN 120

Query: 121 IFHRFWLRFSAANPIANSLGFIRGSIIPAIVRVIRFCICL 157
            FHRF LRFS  NPI +  GFI  SIIPAI+R  RFCICL
Sbjct: 121 FFHRFCLRFSTGNPIYSCFGFITSSIIPAIIRAFRFCICL 156

BLAST of CmaCh07G008290.1 vs. NCBI nr
Match: gi|823136734|ref|XP_012468134.1| (PREDICTED: uncharacterized protein LOC105786304 [Gossypium raimondii])

HSP 1 Score: 129.8 bits (325), Expect = 4.2e-27
Identity = 80/152 (52.63%), Postives = 100/152 (65.79%), Query Frame = 1

Query: 15  SPASILNRRTSIPSSAIMPPPNVAVSP-PLSS-------------PIDLRILSSKSSFQS 74
           SP S + RR SI +   +P     ++P PL +             P+DL ++S K+SF S
Sbjct: 8   SPTSTIRRRNSITTPVQIPTKLTLLTPKPLQTATSLSSGSATAPLPLDLELISLKASFAS 67

Query: 75  YTSLKDILPS--AAFNSPTAASPA-NSGYEISIRNRLVKQAAWAYLQPMSASSYSTGSNI 134
           YTSLKDILPS   A NSPTAA  A NSGYEISIRNRLVKQAAWAYLQPMSAS  S+G++ 
Sbjct: 68  YTSLKDILPSPAVAVNSPTAAGSATNSGYEISIRNRLVKQAAWAYLQPMSASPDSSGTHF 127

Query: 135 FHRFWLRFSAANPIANSLGFIRGSIIPAIVRV 150
           F RFWLR S+ NP ++ L FI   ++P + R+
Sbjct: 128 FRRFWLRLSSQNPFSSCLRFIHLKLLPRLTRL 159

BLAST of CmaCh07G008290.1 vs. NCBI nr
Match: gi|590632737|ref|XP_007027924.1| (COPII coat assembly protein SEC16, putative [Theobroma cacao])

HSP 1 Score: 125.9 bits (315), Expect = 6.0e-26
Identity = 82/149 (55.03%), Postives = 98/149 (65.77%), Query Frame = 1

Query: 16  PASILNRRTSIPSSAIMPPPNVAVSP-PL------------SSPIDLRILSSKSSFQSYT 75
           P S L RR SI S   +P     ++P PL            SSP+DL ++S K+S  SYT
Sbjct: 66  PLSTLGRRNSISSPVQLPRRLTLLTPKPLQTANSLPNGSASSSPLDLELISLKTSLASYT 125

Query: 76  SLKDILPSAA--FNSPTAASPA-NSGYEISIRNRLVKQAAWAYLQPMSASSYSTGSNIFH 135
           SLKDILPS+A   NSPTAA  A NSGYEISIRNRLVKQAAWAYLQPMSAS  S+G + F 
Sbjct: 126 SLKDILPSSAVAINSPTAAGSATNSGYEISIRNRLVKQAAWAYLQPMSASPDSSGPHFFR 185

Query: 136 RFWLRFSAANPIANSLGFIRGSIIPAIVR 149
           R WLRFS+ NPI++ L F   + I + +R
Sbjct: 186 RIWLRFSSQNPISSCLRFSSQNPISSCLR 214

BLAST of CmaCh07G008290.1 vs. NCBI nr
Match: gi|1009161360|ref|XP_015898854.1| (PREDICTED: uncharacterized protein LOC107432265 [Ziziphus jujuba])

HSP 1 Score: 122.9 bits (307), Expect = 5.1e-25
Identity = 81/172 (47.09%), Postives = 104/172 (60.47%), Query Frame = 1

Query: 1   MADSAAQETYAAPSSPASILNRRTSIPSSAIMP--------PP-------------NVAV 60
           M DSA  +++  P S      RR SI +  ++P        PP             N  V
Sbjct: 1   MDDSADHKSHPLPLSNP---RRRNSISTPLVVPANLTLSTTPPITKPLYSTSFPNQNGTV 60

Query: 61  SPPLSSPIDLRILSSKSSFQSYTSLKDILPSAA---FNSPTAASPANSGYEISIRNRLVK 120
           SP    P+D  ++S K+S  +YTSL+D++PS+     +SPTAAS  NSGYEISIRNRLVK
Sbjct: 61  SPTPPPPLDFELVSLKTSL-AYTSLRDLIPSSPGGLIHSPTAASAVNSGYEISIRNRLVK 120

Query: 121 QAAWAYLQPMSASSYSTGSNIFHRFWLRFSAANPIANSLGFIRGSIIPAIVR 149
           QAAWAYLQPMS+S  S G++ FHRF LR SA NP++  LGFIR  +IP + R
Sbjct: 121 QAAWAYLQPMSSSPVSVGTHFFHRFSLRLSAQNPVSACLGFIRSHVIPTLTR 168

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A0A0KHJ9_CUCSA2.4e-4570.81Uncharacterized protein OS=Cucumis sativus GN=Csa_6G454420 PE=4 SV=1[more]
A0A0D2RBJ9_GOSRA2.9e-2752.63Uncharacterized protein OS=Gossypium raimondii GN=B456_002G236200 PE=4 SV=1[more]
A0A061EUC6_THECC4.2e-2655.03COPII coat assembly protein SEC16, putative OS=Theobroma cacao GN=TCM_022851 PE=... [more]
U5G888_POPTR2.1e-2250.69Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0006s22160g PE=4 SV=1[more]
W9RPH0_9ROSA2.8e-2250.78Uncharacterized protein OS=Morus notabilis GN=L484_018844 PE=4 SV=1[more]
Match NameE-valueIdentityDescription
AT5G06280.11.4e-1244.53 unknown protein[more]
AT3G52520.13.0e-0746.34 unknown protein[more]
Match NameE-valueIdentityDescription
gi|778717611|ref|XP_011657724.1|3.4e-4570.81PREDICTED: early nodulin-20-like [Cucumis sativus][more]
gi|659125286|ref|XP_008462609.1|4.4e-4571.88PREDICTED: F-box only protein 11 [Cucumis melo][more]
gi|823136734|ref|XP_012468134.1|4.2e-2752.63PREDICTED: uncharacterized protein LOC105786304 [Gossypium raimondii][more]
gi|590632737|ref|XP_007027924.1|6.0e-2655.03COPII coat assembly protein SEC16, putative [Theobroma cacao][more]
gi|1009161360|ref|XP_015898854.1|5.1e-2547.09PREDICTED: uncharacterized protein LOC107432265 [Ziziphus jujuba][more]
The following terms have been associated with this mRNA:
Vocabulary: INTERPRO
TermDefinition
GO Assignments
This mRNA is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameType
CmaCh07G008290CmaCh07G008290gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameType
CmaCh07G008290.1CmaCh07G008290.1-proteinpolypeptide


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameType
CmaCh07G008290.1.exon.1CmaCh07G008290.1.exon.1exon


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameType
CmaCh07G008290.1.CDS.1CmaCh07G008290.1.CDS.1CDS


Analysis Name: InterPro Annotations of Cucurbita maxima
Date Performed: 2017-05-20
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePANTHERPTHR34569FAMILY NOT NAMEDcoord: 17..151
score: 1.1
NoneNo IPR availablePANTHERPTHR34569:SF2SUBFAMILY NOT NAMEDcoord: 17..151
score: 1.1