CmaCh07G008200.1 (mRNA) Cucurbita maxima (Rimu)

Overview
NameCmaCh07G008200.1
TypemRNA
OrganismCucurbita maxima (Cucurbita maxima (Rimu))
DescriptionSterile alpha motif domain-containing protein, putative isoform 1
LocationCma_Chr07 : 3794186 .. 3801054 (-)
Sequence length670
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSexonthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGAAGACGACGGCGAAGAATTTTGGAAACAATTTCAGAAACGGAGAAGTGGAGAACGAACATAGAGAGAAGAGAGACTCGTCCAAATCTTCACATCAGGTTCTTTACCAGATTCATCGCACCTGATCCATTATCCTTGTTACCACATGCCGCCGACCTTCGCTTTCTCTCGAGGAGATCCGATTGCTGGTACGTTACCGCGATTCTTCTTATATTCGGATTTTGTAGAAATTTTTTGTGTCTGAGATGTTGAAATGAAGTTGAAATTTATGATTTCGAGCTTAAATAGCATTCCAGGAAGATCAAACACACTTAGCCGATCTTTAGAATCTTCAGGTCCATAATCAGTTTCGAGTTTTCTGCGCGTGTAATTTTCTTTTCTGTGATTAGGCGTTGTGTTATTTTGTTGATTTTCTGTGTCAATTTTGTTTTTCAATACAGAAATTGGTCTTGGATAAACGCTATCGCTTGATGTATATAATGTTTGGTATTACCTTGTGAAATACGTAGGTGCAGTTCTGTATATAATGCTGTATTTTCCAAGTGCAGAGGCCGCTTTAGTCTGTGTAAATTGTGAGGATTGTTAGCGATAGAATGCAAATTAGCCTATGACATCTCATTTCGAGGCTACTATTTTTCAAAGTTTAGATATCTCCTTGTTAAATGGTTAGAAACTTTGAAGTTCATGCGGATTGTCAAACTTGTAAAGGGATGCAATGAGTGGAAGAAGTACACAAAATCACAGTGGGGAAGTGTGAATGTTTGCTGAATCCACCACACTTATATGGTGGTGAGAATTCTCTTATTTATAATCATTTACAGAATACAGAAATATGGTAAATTACAAATAACATGGAAATAGCGATAAAAGGAAAGAATAATGAATGAATACATTATATTTGCCTTTAATAAAGGGCTAACCCGTAATGTAAGGCAAATATCTAGATATTTGCCTTATAATAAACGGTCAACTATCCTTAACACCCCCCGCAAGCTGAGCGTTGGATTTGAACGAACGTGAAGCTTGGATCTGAAAAATTCATAGAGAGGTCGAGAAATACTCTTTGTGAAGATGTCAGCAACTTGAAGATGAGAGGGTACATATTGTGTGCGAAGTTTGCCAGCGATAACAAGTTCTCAAAGGAAATGATAATCTGCTTGTGAGAAACAGGGTTAGAGCTAAAAAAAAATAGCACTTTTGTTGTCACATAAGAGTAAGGGCTGCTGTGAAATAGGGACCTTGAGGTCATGCAAAAGATGCGTAACCCAAAGAAGTTCAGCAGCAGTTGTGGCAAGAGCACGATACTCAGATTCACAGCTGGAGCGTGAGACAGTAGGTTGCTTTTTGGCACTCCAAGAAACAAGATTGTTACCAAGATAAATAGAATAGTCGGATGTAGAACGACGAGTATCGGGACAACCAGCCCAGTCAGCATCCGAATAAGCGACTAGCGTACTAGGAATAGTGGATGGACGAAAGATAAGACCAAAGTGGAGTGTTCCTTTGACATAGCGAAGAATACGTTTGACAGTAAGAAAGTGATCTACAGTAGGGGCATGCAAGAATTGACTGACAGAATTGACAGCATAGGCAATATCTGGACGCGTAATAGTCAAGTACTGAAGGGCGCCAACAAGAGATCTGTAGAGAGTAGGATCAGAGAAAGGAGAACCATCAGCAGTCAGGTGTTGAGAAACAACCATGCGAGTGTGAACTGGTTTGCTATCGAGCAACTGAGCACGAGTAAGAATATCTCGAGCATATTTTAACTGACTAATAAAGAGACCATCAGGAGTGTGGGTGAAGCTTCAAGATCAAGAAAGTAACTGAGAGAACCCAAATCTTTGGTAGCAAACTCAGAATGAAGCTTGCGAGTCAAGCTGTCAATAAGAGATGAGTTGTTGCCGGTAACAATAATGTCATCAACATAAAGAAGCAAATAGATAAGGTTAGATTGCTGATGAAATACAAAAAGGTACGTGTCAACGCGACTGCAAGAAAACCTAAGTGTGAGAAGAAATAAGCTAAAACGCTGAAACCAAGCACGAGGAGCTTGCTTTAAGCCATAGAGGGTTTTCTTTAATAGACAAACATGAGTGGGAAATCGAGGATCAATATACCCAGGATGTTGTTCCATATGAACACGTTCAATAAGAGTTCCATTGAGAAAAGCATTATTGACATCAAGTTGTTGAAGAGACCATTTATTTGTGACTGCAATAGAAAGCACAACACGGACAGTGGTAGCTTTGACAGCCGGACTGAAAGTGTCAGTGTAGTCAAGACCAGGAACCTGAGTATAACCTTTGGCAACAAGACGAGCCTTGAAATGCTCAACGGATCCATCAGACAAATATTTAATACGAAACACCCATTTAGAGCCCACGATGTTGGTGTTGGCAGGGCGAGGAACCAAAGTCCAAGTATCATTTTGTTGTAACGCTCGAATTTCTTCATCCATGGTAGCCACCCAAGCAGGATTCTTAGCTGCAGATTTGAATTCTTTTGGCTCAGTGGATGCAAGAAAAGTAGAAAGAAGTTCAGATGAGCCCAAAATACCAAGATTTGCTGGATGACGAGTCTTGAATATACCAGCTTTGGCTCGTGTGATCATAGGATGAGTGCTCAAAGAAGAGAAATCAACAGGAGGTTCAATAGAGGTCGAATTAGAAGTCGAGGGTGGCAAAGTGAAACCTGCAAGAGAAGTATCAACCTGCACAGACTCATCTACAAGGTCAGAACAAATATCACATGGGGATGAACTGGATCGAGGAATGTGTAGTGATGAAGTGGTAGGGGGGGATGAATCAATATGATGAAGATGTGGTTCCAAGAAATTTGAAATAGGAATAGATGAAAGAGGTTGGGCTTGGGAGCTAGGGATAGCAGGAAAGTGAGTTTCATCAAATTGAGCATGGCAGGTGATATATAGCTTAGTGGTGGTGGGATCAAGACAACGAAATCCTTTATGAGCAGAACTATTACCTAAAAAAATACAAGAAATGCTGCGGGGAGAAACTTGTTAGGCATATAATCACGCAAATAAGGATAAACACGACAACCAAAGGGATGAAAATTGTCATAATGTGGAGTGTAGCCATAAAGGAGTTCAAAGGGTGACTTACCTCTAAGAAGTGGAGTAGGCAACCGGTTGATAATATAAGTTGTAGTGCTGAAGGCGTCAACCCAAAAACGAGGAGAAAGATGAGAGTGAAAGAGAAGGGTCAAGCCAGTCTCAGTCACATGACGATGTTTTCTCTCAGCACGACCATTTTGAGCAGGTGTATATGGACAAGAGGGTTGATGGTGGATGCCAGAATTACGTAAATGAGTTTTGAAACAAGTACTAGTAAATTCGGTACCACCATCGCTTTGAAATACCTTGATACGAGAAGAATATTGATTTTTCACAAATTTTTGAAATTGAAGAAAAATATCAAAAAAATCAGATTTAAATTTTAAATTTGAATCGAGAATAATCATCAATAAAAATAGCATAATAAAGAAAACCCGAATTTGATTTGACGGGAGAAGGACCCCAAAGATCACAATGAATAAGATCTAACACATGAGACGACCTACGTTCATTGCGGGAATAAGGCAATCGATGACTTTTCGCAAACTAACAAGTATTACATAATGATGGAGAAGGCAATAAAGACGTAAGAGAAAGATGACATTTTCTATTTAAAAAAGAAATAACAGAATGATTCACATGACCCAGAGGAGCATGCCATAAATCATATGAAGCACGTAAAGATTTGTTTTTAAGGGCTGAAATAAAAGCAGAGTTGCCGCGCTCCAGCACATATAGCCCTCCATCTCTTTTACCGGTTGCCACCACCCTTCTTGTTTGACGATTCTGGATAGTAATAAGATTATTAGTAAATATAACGGAGAGAGGAAAATCAGACGTTAATTTACTTATGGAAAGAAGATTTTTAGTGAGGTGAGGGACAACCAAGACATCTAATAAGTGAATATTTGGAACAAGAGAAAGAGTGCCGGTGTGGGTAATGGGTAGGGATGCACCGCTTTCTACGATCACAGAGTCCTTACCCGTGTAATTTTTAGACTGATCCAGAATAGATGGGTTGACAGTCATATGGGCCGAAGCTCCAGTGTCCAGAAACCAATTAGCAGCATCAGGTCCAACAATAGAACATGACGTGTTAAAGGCTTCAGCTAGGTGAGCATGAGAAGAATCAGGTCGAACATACCGTTGGTTGCAGCGGTCAGCATAATGGCTCTCTTTGCGGCATATTTGGCAGTGAGGTGGTCGACGACCCTGACTTGAGTGGGTTTGTTCTCGATTAGAAGAGTTGTCTTTGTGAGAATAAGAACGACCTCGCTGGTTGGTAAAGGAAGCAGGGTGGCTTCCATGGGTGCGACCACGATTAGTGGCTGTGAATGTTGTAGGAGTGGAGTCAGAGGACTCAAGGGAGCGTTGGAACAGCTCAAAACTTTTAACTTTAGAGACTAAATCTACAAAGCAGGGGATAGGGGTGAGAGCCATCTGAGCAGTAGTAAAAGCTGAAAAATTCGGTGCTGAGTCCACGAAGGAACCAGTGCACTTTATCAATGTCCTCGACGGGTCTGCCAATGGCATGAAGTTGGTCACAAATTTTTTTTGAAGGCACGGGCATACTCAGCAACAGGTTTGGTGCCACGTTTCATCAACTGCAAGTCATTCTTGAGTCTCAGTTCACGAGCTTTCGACTGATGGCTGAACGTAGTTTCCAACGCAAGCCAAACATCACATGCAGTAGAGAGACCAACGACAACAGCCATGGCTTCCTCAATGAGAGAGGAGAGCAGGAGACAGAGAAGTCGTTGATCGGCTGCTCTCCATGCCAAATATTTGGGGTTGAGTGTTGAGGAGGTTTCTGGTTCAAAACGAGGTGGTGGAACCATAGTTCTATCGACATAGCCCAGCATGTCTTGACTCTCAAGGAGAGGGAGAAGTTGGCTTTTCCAGAGAAGATAATTGGAGGAAGAAAGTTTGATAGTGATCATATGGATTAGAGTATTGAAAGGAAGAAGATGATAAGAAGATTCGGAAGCCATAGAGAAGAAAGGATTAGGGTTGTTAAACCGAAAGGGCTCTGATTCCATGTGAATGTTTGCTGAATCCACCACACCTAAATGGTGGTGAGAGTTCTCTTATTTATAATCATTTACATAGAAATATGGTAAATTACAAATAATATGGAAATAGCGATAAAAGGAAAGAATAATAAATGAATACAATATATTTGCCTTTAATAAAAGGGCAAATATGGTAACCGTAATGTAAGGCAAATATCTAGATATTTTCCTTATAATGAACGGTCAACTATCCTTAACAGGAAGACTGAAGAAGTGAGGAACTGGGGAATCCTAAATGGTCTTTAGGTTTGATACTAAAGAATTTGTTCACAACAAAATCAAAATGTTAATTATTTAGTGTGTAAAGGATTTGTTGTGTGGTAATATACCACTTGTACCTTTAATGCCACAACAAAAACGTTATGATACCTAATGTAGTAGAGACGGGAGCAAGATTGATTACACTCACACACCCATAAATAGAAATTAAACAAAGAGACACAAAACTTACGTGGTTCGAAGAGAAGAAATTCCCCTACATTCAGGGGCGGTAGCTAATCACTATAACTAAAGTGTTTACAAGTGTATCTCTCACACTTTCACACTCTCACACTACAAAGTCTCTCTTACAAAATTCCTCCCAATTGCCTCTAGACAAATACAAAATGACAACCTCCACCCCTCCAAACATTGCTGAACAAGTCTTTATATAGATATAGCAATACTAATTCTCATACATGAACCAAATAAATGAGAAAATAAACCAAAAAGGTTATGAACTAAATGAGAGTTATGAACCAAAATAAATGAGAATATGAACCATCTCTGAACTAAAACCAGATTTAGAATCGTGGATGGAGATGTACTTTCATCCAATTGTTGGTAATGGATATTTGTTTTAGTGATGTTAGCCAAAACTGTAGAAGGTTAGGTTTTTGAGCATACAAAATTAGAATGTTAGCCTTATCTTTTGCCAAATTTCCTTCTTCATGCATAATCTGAGACTGGAAGTATATCTTGTTGTTTAAACTGGTATTTGAGTTAGGCTACTGCTGAACGTATATCTATGGTTCATGGATAAATTGGTGGTCTTATTGCAGGACAATATTGTGTATCCCATTAGGAAGTAGCTACATTGTTATATATAGTCTTGTTACGTTTTCTGTATAATTTATCTTGTTTCTTCGGATCAACAGCTTCAGTTGCTTATTGTCTATAAACTATGAAATAATCAGTGAGATGGTGAAAACGAAACAAAGACAGAATATTACTCTTAGTCATCTTTCTGGATCTTCAAACTTCATTGTTGGTTTGGATATGCACGGAGATGATAGTTGGGTGGTGGTAAAGAAGCAGATAGTCGCAATCCTAGTGCATTCTATGGCGATACTTCAAAACTCCCCAACCTCCAATGCTGGACAAAGTCAGCTGCAACCAATTGCCAAAGAAGTAACAAAATGCCAATCAGGAGCTCTTGAAAAGACATGTTTAGAAGTGTCCGCAGCTGTGCTGCCATCGGCTGCTAAAATGTTAAGCAGCAACGCCTGAAACCTTCCCCTGTTCATTGTAATTTGACATTGAAAGAACCATTGAAGCAAAGATATCAGGCCCCAAAATCAAGATAGAGCTTTCAATATCCAATTCGTGGGTATTTTCCAGAGAAAAGGTATCAATAAGTTTCAGCTGGTAAATCTAACCATGAAAAAGCTGGAAAGTATGGGTGCAAATGGGTGGGGCCTTGTAGAAAACTGATGCATGCAATTGATTGTGTCTATCAACC

mRNA sequence

ATGAAGACGACGGCGAAGAATTTTGGAAACAATTTCAGAAACGGAGAAGTGGAGAACGAACATAGAGAGAAGAGAGACTCGTCCAAATCTTCACATCAGGACAATATTGTGTATCCCATTAGGAATGAGATGGTGAAAACGAAACAAAGACAGAATATTACTCTTAGTCATCTTTCTGGATCTTCAAACTTCATTGTTGGTTTGGATATGCACGGAGATGATAGTTGGGTGGTGGTAAAGAAGCAGATAGTCGCAATCCTAGTGCATTCTATGGCGATACTTCAAAACTCCCCAACCTCCAATGCTGGACAAAGTCAGCTGCAACCAATTGCCAAAGAAGTAACAAAATGCCAATCAGGAGCTCTTGAAAAGACATGTTTAGAAGTGTCCGCAGCTGTGCTGCCATCGGCTGCTAAAATGTTAAGCAGCAACGCCTGAAACCTTCCCCTGTTCATTGTAATTTGACATTGAAAGAACCATTGAAGCAAAGATATCAGGCCCCAAAATCAAGATAGAGCTTTCAATATCCAATTCGTGGGTATTTTCCAGAGAAAAGGTATCAATAAGTTTCAGCTGGTAAATCTAACCATGAAAAAGCTGGAAAGTATGGGTGCAAATGGGTGGGGCCTTGTAGAAAACTGATGCATGCAATTGATTGTGTCTATCAACC

Coding sequence (CDS)

ATGAAGACGACGGCGAAGAATTTTGGAAACAATTTCAGAAACGGAGAAGTGGAGAACGAACATAGAGAGAAGAGAGACTCGTCCAAATCTTCACATCAGGACAATATTGTGTATCCCATTAGGAATGAGATGGTGAAAACGAAACAAAGACAGAATATTACTCTTAGTCATCTTTCTGGATCTTCAAACTTCATTGTTGGTTTGGATATGCACGGAGATGATAGTTGGGTGGTGGTAAAGAAGCAGATAGTCGCAATCCTAGTGCATTCTATGGCGATACTTCAAAACTCCCCAACCTCCAATGCTGGACAAAGTCAGCTGCAACCAATTGCCAAAGAAGTAACAAAATGCCAATCAGGAGCTCTTGAAAAGACATGTTTAGAAGTGTCCGCAGCTGTGCTGCCATCGGCTGCTAAAATGTTAAGCAGCAACGCCTGA

Protein sequence

MKTTAKNFGNNFRNGEVENEHREKRDSSKSSHQDNIVYPIRNEMVKTKQRQNITLSHLSGSSNFIVGLDMHGDDSWVVVKKQIVAILVHSMAILQNSPTSNAGQSQLQPIAKEVTKCQSGALEKTCLEVSAAVLPSAAKMLSSNA
Homology
[Close]
BLAST of CmaCh07G008200.1 vs. TrEMBL
Match: A0A0A0KF34_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_6G476650 PE=4 SV=1)

HSP 1 Score: 109.4 bits (272), Expect = 3.8e-21
Identity = 57/96 (59.38%), Postives = 72/96 (75.00%), Query Frame = 1 

Query: 44  MVKTKQRQNITLSHLSGSSNFIVGLDMHGDDSWVVVKKQIVAILVHSMAILQNSPTSNAG 103
           MVKTKQ+QN + +HLSGSSN ++ LDMHGDD WVVVKKQ V ILV  ++I+  S   N  
Sbjct: 1   MVKTKQKQNSSPNHLSGSSNSVIDLDMHGDDGWVVVKKQKVTILVPPISIVTKSAPPNVE 60

Query: 104 QSQLQPIAKEVTKCQSGALEKTCLEVSAAVLPSAAK 140
           QSQLQPI ++V+ CQ+GAL +TCLE  A VL S ++
Sbjct: 61  QSQLQPITQKVSNCQTGALVETCLEAPANVLLSTSE 96

[Close]
BLAST of CmaCh07G008200.1 vs. NCBI nr
Match: gi|659125335|ref|XP_008462633.1| (PREDICTED: uncharacterized protein LOC103500944 [Cucumis melo])

HSP 1 Score: 118.2 bits (295), Expect = 1.2e-23
Identity = 58/96 (60.42%), Postives = 78/96 (81.25%), Query Frame = 1 

Query: 44  MVKTKQRQNITLSHLSGSSNFIVGLDMHGDDSWVVVKKQIVAILVHSMAILQNSPTSNAG 103
           MVKTKQ+QN   +HLSGSSN+++ LDMHGDDSWVVVKKQ + ILV  ++++  S T +AG
Sbjct: 1   MVKTKQKQNSNPNHLSGSSNYVIDLDMHGDDSWVVVKKQKITILVPPISVVTKSSTPDAG 60

Query: 104 QSQLQPIAKEVTKCQSGALEKTCLEVSAAVLPSAAK 140
           QSQLQPI ++V+ CQ+GALE+T +E  A VLPS+++
Sbjct: 61  QSQLQPITQKVSNCQTGALEETRIEAPANVLPSSSE 96

[Close]
BLAST of CmaCh07G008200.1 vs. NCBI nr
Match: gi|778717699|ref|XP_011657741.1| (PREDICTED: uncharacterized protein LOC105435895 [Cucumis sativus])

HSP 1 Score: 109.4 bits (272), Expect = 5.4e-21
Identity = 57/96 (59.38%), Postives = 72/96 (75.00%), Query Frame = 1 

Query: 44  MVKTKQRQNITLSHLSGSSNFIVGLDMHGDDSWVVVKKQIVAILVHSMAILQNSPTSNAG 103
           MVKTKQ+QN + +HLSGSSN ++ LDMHGDD WVVVKKQ V ILV  ++I+  S   N  
Sbjct: 1   MVKTKQKQNSSPNHLSGSSNSVIDLDMHGDDGWVVVKKQKVTILVPPISIVTKSAPPNVE 60

Query: 104 QSQLQPIAKEVTKCQSGALEKTCLEVSAAVLPSAAK 140
           QSQLQPI ++V+ CQ+GAL +TCLE  A VL S ++
Sbjct: 61  QSQLQPITQKVSNCQTGALVETCLEAPANVLLSTSE 96

The following BLAST results are available for this feature:
BLAST of CmaCh07G008200.1 vs. Swiss-Prot
Match NameE-valueIdentityDescription
BLAST of CmaCh07G008200.1 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0KF34_CUCSA3.8e-2159.38Uncharacterized protein OS=Cucumis sativus GN=Csa_6G476650 PE=4 SV=1[more]
BLAST of CmaCh07G008200.1 vs. TAIR10
Match NameE-valueIdentityDescription
BLAST of CmaCh07G008200.1 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|659125335|ref|XP_008462633.1|1.2e-2360.42PREDICTED: uncharacterized protein LOC103500944 [Cucumis melo][more]
gi|778717699|ref|XP_011657741.1|5.4e-2159.38PREDICTED: uncharacterized protein LOC105435895 [Cucumis sativus][more]
GO Annotation
GO Assignments
This mRNA is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameType
CmaCh07G008200CmaCh07G008200gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameType
CmaCh07G008200.1CmaCh07G008200.1-proteinpolypeptide


The following three_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameType
CmaCh07G008200.1.three_prime_UTR.1CmaCh07G008200.1.three_prime_UTR.1three_prime_UTR


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameType
CmaCh07G008200.1.CDS.3CmaCh07G008200.1.CDS.3CDS
CmaCh07G008200.1.CDS.2CmaCh07G008200.1.CDS.2CDS
CmaCh07G008200.1.CDS.1CmaCh07G008200.1.CDS.1CDS


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameType
CmaCh07G008200.1.exon.3CmaCh07G008200.1.exon.3exon
CmaCh07G008200.1.exon.2CmaCh07G008200.1.exon.2exon
CmaCh07G008200.1.exon.1CmaCh07G008200.1.exon.1exon