CmaCh07G005500.1 (mRNA) Cucurbita maxima (Rimu)

Overview
NameCmaCh07G005500.1
TypemRNA
OrganismCucurbita maxima (Cucurbita maxima (Rimu))
DescriptionUnknown protein
LocationCma_Chr07 : 2367794 .. 2372088 (+)
Sequence length912
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGCCTCATTGCACCAAAGTTGCTCATAAAGGAGGTAGTTATCTCTCGGCTATAACTTCATGAGGCATTTGAAAATAAGTATGTCTCGGCTAAAAGAATCAAATTTAGGCTAAACCAATCTAAAAAATCCAAGAAAAGGAAAAAGAAAACCTAGTACTACAACCCACTAACATCCAACTGGGCAAAATATTATCAAATACTATAGATCTGTAGCCACCTAATTGATCCAAAATGAATCAAAAAGTGTCATGTTAAAACATCCTAGCCACCCTAAATATAATATAATGATGTATAATAATAATAAAAAAATACATCGTGTTTGCTTGTTAAAGGCAAAAAGAAATCCACCACTAATAGATATTGTTCGTTTTTAACCCTTACGTATCGTCGTCAACCTCACGGTTTTAAAACGCATCTACTAGGGAGATTGGAATCTAACCGCCGATGTGGGATCTAACAATATACCCTCTTGAGAGCACAACGTTCTCGCTGACACATTACCCAGTGTTTGATTTCGATACCATTTCTCAATTTGTGCTCAATTTGTGCGTGTAATCCTTGCGCAAGGATCATGCTAATCTTCTCTGCAGCGTATCAATCTGATCGGATGTCCCCAACCACATTCCTCAACTGTCTCACCAGATGTGCTGATTTATTCCTCAACTGTCTCACCAGATGTGCTGATTTATTTTTACAGGGCAATTAGTCAACTAAATTATCAACCATGCATCAGACCATTCCAAAACATTACCAAACTCCAAGAAACAGAGTCTGAGACGCAGTGAGCAAACTCAACTCCAGAACCCCTCGTCTGATTCTGAAGGCCAAAGAAGAAGAAAACACAAGAGGGGTACTTTTAGCTTTTCAACTTCGTAAGACTCTTTCACGAAGTGGGAAAGAAATCGAGGGAAGAGAACCCATGCCGAAATGAATTTTGGCTCTTTACTCTGAAACCCTTCCTCTCACGGAGAATGTATAATTTCTTTAAAAATCATGAAGCAAACTTGATTTGGATATCGGAATCTCGAACGCTGTTCATAGTGGCACGAACAGGTGCTTAAAACGAGGTTTGTCCCTTTCTCGAGTTTGTAACTAATAATGTACTGAAAAATCTAAGATTAATAATTGCATTCCTTCCATTTTTTCTATTTTTTTAGAGGTATAATCTTGATTTTCCCGATGGTAATAGATGTGGGGATCTAGCATCCGCCTATGAGTAGCAAAACTAGAATCAACGTGGTGTTTGTCCAAACACCATCAATAAGTCAAGTGAGTGATGAAGGTATATAGCCATTGAGTTTTTGAGTTGGCCTGACAAAGAAATAAATTGTAAGCGACGGAGGTTTAGATACTTGGGCCAAGTTGGGGAGGTCAAGATATGATAAGCAAACAACGATTGGTAAGTTGAGCTAAGCAGCTAACAAGGGACCAGAGTGTGTCTCCATGTACAGGGCTCATAGATTTCATGAACTAGACATGAGTAAGCAAAGACATATTTGTATAATCTGACAAAATCAACTCAGGCCAAGCCAAAAGTAGCAGAAGACATTATCTGATAAATTCATTGATCTAGAATTATGGTTATAAACAAATTGAGTTTTGCCCATACAATGCTAAGGATAACTCAACAAAAGGTCGATGGATTAGAACTCGTAAGGTTCTAAAGTTGAAGAGGATGTTCATAATAAAAATATTATGTCCATCATTGAGGCATAAAATCGAGTAAGTCAGTCACTCCTACTCTCAAGAAGGCATAAGGTAATACTCATATGTCCCGATGAGATTTTACCTAATGACATATGTTGTGGGGGTATTTCCTTGTTTGTTCTTCTCCATGTTTTTTTAATACTATTTTTCCCTGCCAACAATTACATCCTCGCACATATTATTTTTGCAAAAGACCCAAAATAAATACCTTTTTGCTTTAGCTTTTTAAGATCTAATCAACATAAACATGATTACTTCTCTCTGATTTCTTTTGAGATTCAACAGTAAATCAGTCAGCACCCAGCAGAAAAATGGAAACTTTGACTGCATTTGCACTCTCTTAACCTACCTAAATCAACGAAAATACAAAAAGATGCATGGATAAAAGTGTTCCGGTGTCATAGAGTTGTTAAGTCCTCGGTAAGAATCACAATGTACTTTCCAGACTATTGATCAGACCATTATAAGACTGCATCCTTTTGAACAGAACAGAACCCACCAAAGTCCAAACCCTATGCTATTTCTGGCAATATTACGATTTTAATGATCTTGCTTTTCTTTTATCGTGTTTCACTGCTTTTAAACTCTCTAGGCTAAAGGGAAAGCAATAAACCGAACCTGACGAACTTGGCATGCCTCTGTCTGAGCACCAGCTTCCCTTACGCAGCCACCAAATTGTATGGTTCCGATAGGGCAAGTGCTGCATGTCATATCTTCCATGACATGAAAAAAGCAACTTGCAGGTTCCCAGCCTGCCGTCTCTCCATTTGAATTGTTGTCCTCGTTGCCCGTGTAAAACTTCCCTGGACTCGACTAAGCAGAAGCTCAGCTACAACTGAACCTGTTGACTTGTTCTTTTTCAGAAAAGATTAGAGAGGATAAAGTTGAATGAAGTACTGCACATAAAAGAAGACTGAACTCAAAAGACCGCAGTTATCTAGGAAGAATAGTGCTCGCTCAGGCTGCTACTCTGCAGTTACTGTAGCCCTGCAGATGACATGGACGAGAATGAGAAATTAAAATTATGGCGGTTGCGCAGAATGGATCCTACGGGTTCAATTTCATATGCAAACGGCTTTAGAAGATGGAAGTTGATGTGATCCACCATAACACAACGAAAAGTCAAAATTACAATGGCTAAGTAGAATGTTTATCCCATTAACACAGTCACAAAAATAAGTACATTTCCCTGATTACACTTCCCCCAACCGCTTCACACTTTCTCTCTGGGTGCAATTTTTCAGTTCCCATTAAATCTCACATTATGGAATCCCGATATCTTTTCTGGCAAAACTTATCATGTGATAAATGCCGGAGTTTAAACTGCCACCAAAATTACAGTCCTTAATCCTATTCTGTCATTATGCAAAAACTACCATCCCAATTTGTATCAAAAGAACCCTAAGCCATCTCCATTCTCTTCTTCAAAGAGCTCAAACATCTAGGACTTCCTTTTGATTTATGCGTTCATCGATCAGATCGTGCCTTCCAAAAGGACTTCGTTCTCCACTACGCTCTTGTCTGCTTTCCCATATCTTTCCCGACTTCCCTATTGCTAGAATCAACTCAAGTTGCTTTTGTTGTTGTTCCTACAATCCCAACCCAAACAATAAATCCAAATCAGATTAGATGTCAAGCACTCCTAGTATATGCAATAATCAAACAACAAACCTATTTGATAACCATTTGAATTTTTACTTTACTTTGTTGTCTACAATAATCAAACCAAGTTATGAAAACTAAAAAAACAATTTTCAAAATCTTGTTTTTGCTGTTGGAATTTGGATAAGAATTCTAATGATGGTAGAGAAATGACGAGAAAATGAGCTCAATTTTGAAAAGCCAAAAACCAAATAGTTATCCATTATTCTATCTTTTTATATTGTGTTCTTTTGAGTTTCTTTTTAATCAGAATTCCAACTTTCTTAAACACCAGTACCCTATGCTTCATCTGTATTCACTTTAAGTCACTCCTCGACAAAACTTAAAAACCTAGAATTAACGTTCAACAGAAGATTTAATGCACCTGCATAGCTAGTAAGACCTTCTGGATTTCCCCAAGCTCGTTCTCCAGAATATCTCCCCGAACTGCCAATGCTCGAGTGGCCTCAGAGGTTTTTTGAGCTAAAGCTGCAGTCTTCAGAAATTGATCAATACTTAGAGGCGGAAAATGGTATCTCATCTTAGCAAAATGTAAGTAATATAGTTATCAAGCCTGGTTTTAAAGGTTAAAAGAATGATTCTATCACACCTTAAAGTTCATTTTCACCTTCTCAAAGTGTTATTTCACATTGCTACTGAACCCCTACAGCACATAAATTTTCTTAACTACCATACATCCTTGTAATTCCATTACAATTAACTCACTCATAGTCTCAGCTTCATGTCTTTTGTGGGAAGTATGTTTGGTAGGTATGAAACTGCCGCCTAACTTACATTTCAGGATTCGGCTTCTTAACAATAACATTCTCTTTGGGTTTTGCTGGAGTTCAATGCCAAAAATTTCAGATCTGGGTTCACTTAGTTTCTTCTTCCATATTTACAGAATTCAAGAAATTGGAATTACAAATAACTACAACCAGAATTAG

mRNA sequence

ATGCCTCATTGCACCAAAGTTGCTCATAAAGGAGACCATTCCAAAACATTACCAAACTCCAAGAAACAGAGTCTGAGACGCAGTGAGCAAACTCAACTCCAGAACCCCTCGTCTGATTCTGAAGGCCAAAGAAGAAGAAAACACAAGAGGGGTACTTTTAGCTTTTCAACTTCCAAACTTGATTTGGATATCGGAATCTCGAACGCTGTTCATAGTGGCACGAACAGGTGCTTAAAACGAGGTTTGTCCCTTTCTCGAGTTTGTAACTAATAATGTACTGAAAAATCTAAGATTAATAATTGCATTCCTTCCATTTTTTCTATTTTTTTAGAGGTATAATCTTGATTTTCCCGATGGTAATAGATGTGGGGATCTAGCATCCGCCTATGAGTAGCAAAACTAGAATCAACGTGACATGAAATTATGGTTATAAACAAATTGAGTTTTGCCCATACAATGCTAAGGATAACTCAACAAAAGGTCGATGGATTAGAACTCGTAAGTCACTCCTACTCTCAAGAAGGCATAAGATTCAACAATGCATGGATAAAAGTGTTCCGGTGTCATAGAGTTGTTAAGTCCTCGCTAGTAAGACCTTCTGGATTTCCCCAAGCTCGTTCTCCAGAATATCTCCCCGAACTGCCAATGCTCGAGTGGCCTCAGAGGTTTTTTGAGCTAAAGCTGCAGTCTTCAGAAATTGATCAATACTTAGAGGCGGAAAATGTATGTTTGGTAGGTATGAAACTGCCGCCTAACTTACATTTCAGGATTCGGCTTCTTAACAATAACATTCTCTTTGGGTTTTGCTGGAGTTCAATGCCAAAAATTTCAGATCTGGGTTCACTTAGTTTCTTCTTCCATATTTACAGAATTCAAGAAATTGGAATTACAAATAACTACAACCAGAATTAG

Coding sequence (CDS)

ATGGTTATAAACAAATTGAGTTTTGCCCATACAATGCTAAGGATAACTCAACAAAAGGTCGATGGATTAGAACTCGTAAGTCACTCCTACTCTCAAGAAGGCATAAGATTCAACAATGCATGGATAAAAGTGTTCCGGTGTCATAGAGTTGTTAAGTCCTCGCTAGTAAGACCTTCTGGATTTCCCCAAGCTCGTTCTCCAGAATATCTCCCCGAACTGCCAATGCTCGAGTGGCCTCAGAGGTTTTTTGAGCTAAAGCTGCAGTCTTCAGAAATTGATCAATACTTAGAGGCGGAAAATGTATGTTTGGTAGGTATGAAACTGCCGCCTAACTTACATTTCAGGATTCGGCTTCTTAACAATAACATTCTCTTTGGGTTTTGCTGGAGTTCAATGCCAAAAATTTCAGATCTGGGTTCACTTAGTTTCTTCTTCCATATTTACAGAATTCAAGAAATTGGAATTACAAATAACTACAACCAGAATTAG

Protein sequence

MVINKLSFAHTMLRITQQKVDGLELVSHSYSQEGIRFNNAWIKVFRCHRVVKSSLVRPSGFPQARSPEYLPELPMLEWPQRFFELKLQSSEIDQYLEAENVCLVGMKLPPNLHFRIRLLNNNILFGFCWSSMPKISDLGSLSFFFHIYRIQEIGITNNYNQN
Homology
The following BLAST results are available for this feature:
BLAST of CmaCh07G005500.1 vs. Swiss-Prot
Match NameE-valueIdentityDescription
BLAST of CmaCh07G005500.1 vs. TrEMBL
Match NameE-valueIdentityDescription
BLAST of CmaCh07G005500.1 vs. TAIR10
Match NameE-valueIdentityDescription
BLAST of CmaCh07G005500.1 vs. NCBI nr
Match NameE-valueIdentityDescription
GO Annotation
GO Assignments
This mRNA is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameType
CmaCh07G005500CmaCh07G005500gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameType
CmaCh07G005500.1CmaCh07G005500.1-proteinpolypeptide


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameType
CmaCh07G005500.1.exon.1CmaCh07G005500.1.exon.1exon
CmaCh07G005500.1.exon.2CmaCh07G005500.1.exon.2exon
CmaCh07G005500.1.exon.3CmaCh07G005500.1.exon.3exon
CmaCh07G005500.1.exon.4CmaCh07G005500.1.exon.4exon
CmaCh07G005500.1.exon.5CmaCh07G005500.1.exon.5exon
CmaCh07G005500.1.exon.6CmaCh07G005500.1.exon.6exon
CmaCh07G005500.1.exon.7CmaCh07G005500.1.exon.7exon
CmaCh07G005500.1.exon.8CmaCh07G005500.1.exon.8exon
CmaCh07G005500.1.exon.9CmaCh07G005500.1.exon.9exon
CmaCh07G005500.1.exon.10CmaCh07G005500.1.exon.10exon


The following five_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameType
CmaCh07G005500.1.five_prime_UTR.1CmaCh07G005500.1.five_prime_UTR.1five_prime_UTR
CmaCh07G005500.1.five_prime_UTR.2CmaCh07G005500.1.five_prime_UTR.2five_prime_UTR
CmaCh07G005500.1.five_prime_UTR.3CmaCh07G005500.1.five_prime_UTR.3five_prime_UTR
CmaCh07G005500.1.five_prime_UTR.4CmaCh07G005500.1.five_prime_UTR.4five_prime_UTR
CmaCh07G005500.1.five_prime_UTR.5CmaCh07G005500.1.five_prime_UTR.5five_prime_UTR


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameType
CmaCh07G005500.1.CDS.1CmaCh07G005500.1.CDS.1CDS
CmaCh07G005500.1.CDS.2CmaCh07G005500.1.CDS.2CDS
CmaCh07G005500.1.CDS.3CmaCh07G005500.1.CDS.3CDS
CmaCh07G005500.1.CDS.4CmaCh07G005500.1.CDS.4CDS
CmaCh07G005500.1.CDS.5CmaCh07G005500.1.CDS.5CDS
CmaCh07G005500.1.CDS.6CmaCh07G005500.1.CDS.6CDS