CmaCh06G007770.1 (mRNA) Cucurbita maxima (Rimu) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CmaCh06G007770.1
Type	mRNA
Organism	Cucurbita maxima (Cucurbita maxima (Rimu))
Description	YbaK/aminoacyl-tRNA synthetase-associated domain
Location	Cma_Chr06 : 4015733 .. 4020876 (+)
Sequence length	1239

Genome Viewer

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

AAGAGAAAGAAGGAAACTGTATTCATCCGAATTGCCCAATGGGGACCGAGGCTGGAGCAATTGCAGAGCGAAACTCCATGGAAGCACTAGCGAAGCTCGAATACCGCCAGACTCTAATCATCAATCGAATTTCGAAGCTCGAGCTCGCTTATCTTCCAAATCTCGACTCGGAACCTTCTCCTATTTCCTCTGACAAGGCAGATGGCGACACCGTGTCTCGACTCTCCACCATTCTTCGAACCAACGCTGTCAATGACTTCTCCTTCAACAGGGTTCCCTCTGATTACTACGATTGGTCTCTCGAAGCCCGACGGGACGTTCTTAATGCCGCTTCGGTGGACCATCTTTGCAAGAGCATTGTTCTGGTGCGTTTTGGAATCGGATTCTTTTTTTGCAATTTCGATATGTGATTTTGTATTGACGATTTCGAGTGCGTATGTTTATTGCTTTTAGGCCTTTTTCATTAGTTACTTTTGGGTTTGAAGGAATGTGTAGAATTGGATTAATGAGAGGAAATGTTTGGATCGAATGATGGCGTTTATTAAAATGCCTATCTTCCTGAAAAAATTATTTCAGGGTGGAACAGTATGGCCAATGATTTTGCACCATTTGAAACTTATTGGATGCGAGAGAACTAAAAAATGTATTTCAAATCTTTATTGAATGGTTATTAGAGGTAGACATTTTGAACCTGAATTCAACGGTCATTAGAGAGCAGTCAGTGGCTTATTCGTTGAATCTAGTCTTTTTTTCCTCTTCCTGAGTTATAACACTGTTGGGGAGGGACAAACATTTTCAGCTAGTTGCAAATTGAAATGAATTGAACCAAGCATTTATGTTGTGCTTTATTCAAGTCCTCATGTAATCATACTTCCAATGTCATTAGTTCTAGTTGAGATTCTAGCTTTCTGTAATGAACATGACATTGCATTACATTACATTGTGATCATATATGCTCTCGAGAATTCCTATGTTTTATGCTGGGTTGCTTGAGACCATCTCTTTGGTGGCAAACTTGGGGCTTTTTGATAGCATCATGGGATCTTTGTGGAAAGCTTTGGTGTCGAAGAAGGAGGATTTGAGTTTTTTATGGTGTCGAAGAAGGAGGAACTGAACTGTATTTGTATGATCTTCTCGGAGATTGTGCATTTTGTAGTTTTTGTTACTCTTATATATAATTTTTTTCTGTGCTAATCGGAGAGTGTGTTATCTTCTTGAAAGGTTTCTATTTATCCTTATCTTAAATGAATTGATTTGGGAAATTTTCATAAAAGAACCAAATTAGTCTTACCATACATTAGTATTTTCAGCTTCCAAATAGTTCTCGGCTTCTGCGTTCAAGGATTTTACTTTTAACAAAGTAAATTTTTCTCATCAACAATTGAAAGGAAGAGAAAGGAGGGAAAGAAAAGGCCTTATTTTGTTCCTTTTGCATATATGTTGTTGATATAATTTGACAATTGTTAGATGTATGACTGTCAGTTTAAAGATGATAGAAAACTTTCATTGTTAGCTACTGTATGGCTTATGGCATCCATTTTTAATCGAATTTTGGTTGATAAGAACTCGACATTTATATATATTATATACCATATACCATATCTAGAAGTTCAATTAGGACCTCTCCTTCCTAGGCCATGCTTTCGTAGATGCTAAAACGTAACTGGGATCGCGTGTACTTCTGTTTTGTACTGTCAGGTAAATACTCAAGCCCAATCCCATGTCGTTGATTGCAGTAACCGCAACAATTCAAAATACTATGTTGTTGTTGTTCAGGTATGCCTTCCTTTCTAATTTTCTCTAAACAGTTTGATATAGTGACCTGTATTCTCCTCTTTTAAAACATAACATTTCTTTATTTAGTATTCTGCTAAATTCAATGCTGAAACTGTTAGAAGCTTCCTGTATTCACTCAACGATGGAAAGATACCAAAAAAGAAATTCAACTGTAAGTTTTCTATTATCCCATTGGTGATGCCTTAATGGTTCTAAATGTGGTAATCCAAATTTTTAGTTTACTTGATTCATTAATTGTTCATATATTCACATCCATGCTTTGATTAAGTTAAGTGAGAAGGAGATCACGACACGATTCAAGCACCATCACTTTGTGCATGCTTTGATTAATATAGATGAAAGAACAAGAGGAGGCCATAAAAACCAAGACCAAACCAACCACGAGAAAAAATTACTGAAAAAAAAAGGAAAATCTCTAAACAAATTATACTTGAAATGCCAAGGGGAGGCACTAATGTTTCAGATACTATAGTTGCTTGAAGTTTTCTTATTCATGGTTTCCTATTTACACAGTGAGACTTGCTCCAGAGGAGATATCTGCAGAGCTAACTGGATATGTGCATAATGCAGTGACATGCATTGGCATGAAAACGGATATCCCAGTAAGAATGTTAATGTTTGACTTGATAAATTGTAGATTTGAAATTATTCTAGCTCGAGCAACCCATATTTAAATCTTTTTTCTGAATTTTTCATGTATGCTTTAATTTTTAAAGATCCCATCCCGTAATCAATATGCTCGTTTCTTAATTTTCCCGTAAATTTTCAAAGTGGTACATGTTATTTTGTGCAAATGTGATGATGGCCAATTTTGTTGTAGGGTTCTTCTTGTTTTCTCTTGTTGGATGCAAGGCTAATTCTTTAGTAAATTCTACTAAAATCTGTGACTACGTATAAAATCTACCCTTATCTGGAAATTACCATAACTAACTGGGATAAGATATGAAACCTAAATGGGGATTAGACAAGAAAACGACTATCTATTCACGTTCAGACAACCATTGATATCATCACTAAAGGATGGAAAGTGAGAATGATTCACTAAGAAGAGAGTAGACCCAACTTGGACTAAGTTAAAAAAAAGAACCAATGGCTCGTTCGGATAAATTGTTTCCATTTTGGGTATTGGGAATAACTCAACAAACTGAAATTTCATTATTTCCCTTCTTAAGTTTAAGATCGTTCAATTTTCTTCTTGGTATTTTGTATTGAAGAGATTAGTGCTAGAAAGATCAATGAACGTACAATTTATATTTCTTTACAAGAATTTGAGATTTCATTTAGATAAAATGAAAGAATACAAAAGGGCATTGAAAAACGTAGCCCAACAAGAGAGGCTAAGCAACTAACTATACAAAGGGCATCCAGGTTGTCCTATATGAGGAATTACAATAAAAAGTGAAAATAAATAAAAAAGAGGTAAATTTTTTCGATCTTGTTGATGCCTGGTGACATTATTTGAGGTAAAATGAATCAACGGTTCCTTAATCTTCCAAGAATTTTTCTTCTTCTTGGATATTCACATTGTATATCAGGATATTCTGAGACTATTTGTTGAATCTGTTCTTCAAGGCAAGGAAGCATTAAGAAGAAGTTCAAGTAAGAGATCATTGAATTGGAACATGCCTTGTTCAAGCTTAGAAATGTGAATAAAATAACTGGAATGCTATATAACTAGAATGCTTACTGATCAGTAACTTCGGCATGCTTTGTGCAACCGTAGTGGGTGTTCCATTGAACGGGAGAAAAGTTGGTACCATGAAATTGGCCCACATCTCGGGTCAATTTATGTTTAGGGGGCAGTGTAATGATAGTGTAGCTATTAGAAGCATATTATTAGTCACTAGTTCTTGGTTGGGGTGTGAGGTAAGTTAGTGAGAATTGGATTGCTCTTCAAGAGAAGGTTAAATTTAGAGCACAAATCTTGGGAATGGTTTCTAGAGATAACAGGTGCCTTAAATGCTTAGTGAACCTTTTTATTTCACTTGGATTTTGTAAAGTACATTTCTTTTTTTTGAAATAAGAAACAAAATTTCAAGGATATCAAACAAAATTAGAATGAACAGAGATCAGAGGACGAAAGTATATTATTTAGCTTGGTAATATCGTCCTTGATTACGAGTAAGACGCATAAAGTAAATAAATCAAATATTTCAACATTAGCATATAGGCTCTGATGCTCATTTGGAACTGCCAGAAATGTACTACAATAATAGACATTTTTGCTCATTCTGATCTGGGAGAAATGCGTATTTCCCCATGTTGGATCTTTTTTGATCCTCTTGCTTCTGATTTTTGTCCAGCTTCCAGCTACTGTGCTGGACCAGTGTTTCAAATGTCATGTCTGTCACATTTTATGTGTTGGACAGTATTTTGTGGTCCACTATAGCTTTTGCCTAGACCAATGATTTCCTGCCAGTCTGCCACCACCGAAAATGCCTCGATCGGAAATTAGAACTAAAACCTGGTTGTTCGAACAGCAGAAGTGTGTGCTCGAACACAAAATGGTTCTGACATGTCTAAGTATTAAGCAGATAATCTAATAGTAGGTGGGTAGATTGATGAAATTGTCACACCAACTAAAAAGCATGGAAGATCAGCCTACAAATATAAACAGAAAAATGTACTCTTCTTTCTGAATTCTGATGCATCATTGACTATATTTGTATGGTAAATCTCAATCTTGTTCATCATGCTCTAATTGATTAATTACACTCCGTTTCAGGTGATTTTGGACGAAGCGATTGCGAAACTAAGTCCTGATTATTTTTGGCTGGGCGGTGGGGAAGTCGACCTGAAGTTAGGTATCAGGACATCAGAGTTCATAAACTTTGTTAAACCCTTCATTATCAAGTGTAGCTAGAGAATCAGTTTTCAGCCAGTTCGCCCCTGCCCAAGCTCAACGACGACTCAACACAACCGACTAATACCAACAGGATCAAGGTTTTTAGTATCGTTCTATTTAAATTATTTCTGCTTCTGAGGATCAATTGTTTGGATGGAAGCAAGAACAGAAAAAAAACTAAAAAAGTTTCAGTGCTTAGAAATGGGATTCAGCTACTTAGAATGGCGGAAGTTGTTACAATCTAACCATTTAATAGGCATTAATGATTTTGATTAAAGGACCACTTTCAACTTCAGCAATTCATTATATGATTATGATATGTGAGTAATAAAGTGAGTAGCAAACATACGCAGAATTTGTTGATCAAAATGGAGCAACTCTGCAATTCATGTACGCAGAATCAAGAACATGGAGTAGTCATATCAAAGAAATTGCCGGTGTCCTTTTGTGAACATTTATGAGGGATGCTACTTTACTTGGCTGCATCAGGGCAAGACTATGG

mRNA sequence

AAGAGAAAGAAGGAAACTGTATTCATCCGAATTGCCCAATGGGGACCGAGGCTGGAGCAATTGCAGAGCGAAACTCCATGGAAGCACTAGCGAAGCTCGAATACCGCCAGACTCTAATCATCAATCGAATTTCGAAGCTCGAGCTCGCTTATCTTCCAAATCTCGACTCGGAACCTTCTCCTATTTCCTCTGACAAGGCAGATGGCGACACCGTGTCTCGACTCTCCACCATTCTTCGAACCAACGCTGTCAATGACTTCTCCTTCAACAGGGTTCCCTCTGATTACTACGATTGGTCTCTCGAAGCCCGACGGGACGTTCTTAATGCCGCTTCGGTGGACCATCTTTGCAAGAGCATTGTTCTGGTAAATACTCAAGCCCAATCCCATGTCGTTGATTGCAGTAACCGCAACAATTCAAAATACTATGTTGTTGTTGTTCAGTATTCTGCTAAATTCAATGCTGAAACTGTTAGAAGCTTCCTGTATTCACTCAACGATGGAAAGATACCAAAAAAGAAATTCAACTTGAGACTTGCTCCAGAGGAGATATCTGCAGAGCTAACTGGATATGTGCATAATGCAGTGACATGCATTGGCATGAAAACGGATATCCCAGTGATTTTGGACGAAGCGATTGCGAAACTAAGTCCTGATTATTTTTGGCTGGGCGGTGGGGAAGTCGACCTGAAGTTAGGTATCAGGACATCAGAGTTCATAAACTTTGTTAAACCCTTCATTATCAAGTGTAGCTAGAGAATCAGTTTTCAGCCAGTTCGCCCCTGCCCAAGCTCAACGACGACTCAACACAACCGACTAATACCAACAGGATCAAGGTTTTTAGTATCGTTCTATTTAAATTATTTCTGCTTCTGAGGATCAATTGTTTGGATGGAAGCAAGAACAGAAAAAAAACTAAAAAAGTTTCAGTGCTTAGAAATGGGATTCAGCTACTTAGAATGGCGGAAGTTGTTACAATCTAACCATTTAATAGGCATTAATGATTTTGATTAAAGGACCACTTTCAACTTCAGCAATTCATTATATGATTATGATATGTGAGTAATAAAGTGAGTAGCAAACATACGCAGAATTTGTTGATCAAAATGGAGCAACTCTGCAATTCATGTACGCAGAATCAAGAACATGGAGTAGTCATATCAAAGAAATTGCCGGTGTCCTTTTGTGAACATTTATGAGGGATGCTACTTTACTTGGCTGCATCAGGGCAAGACTATGG

Coding sequence (CDS)

ATGGGGACCGAGGCTGGAGCAATTGCAGAGCGAAACTCCATGGAAGCACTAGCGAAGCTCGAATACCGCCAGACTCTAATCATCAATCGAATTTCGAAGCTCGAGCTCGCTTATCTTCCAAATCTCGACTCGGAACCTTCTCCTATTTCCTCTGACAAGGCAGATGGCGACACCGTGTCTCGACTCTCCACCATTCTTCGAACCAACGCTGTCAATGACTTCTCCTTCAACAGGGTTCCCTCTGATTACTACGATTGGTCTCTCGAAGCCCGACGGGACGTTCTTAATGCCGCTTCGGTGGACCATCTTTGCAAGAGCATTGTTCTGGTAAATACTCAAGCCCAATCCCATGTCGTTGATTGCAGTAACCGCAACAATTCAAAATACTATGTTGTTGTTGTTCAGTATTCTGCTAAATTCAATGCTGAAACTGTTAGAAGCTTCCTGTATTCACTCAACGATGGAAAGATACCAAAAAAGAAATTCAACTTGAGACTTGCTCCAGAGGAGATATCTGCAGAGCTAACTGGATATGTGCATAATGCAGTGACATGCATTGGCATGAAAACGGATATCCCAGTGATTTTGGACGAAGCGATTGCGAAACTAAGTCCTGATTATTTTTGGCTGGGCGGTGGGGAAGTCGACCTGAAGTTAGGTATCAGGACATCAGAGTTCATAAACTTTGTTAAACCCTTCATTATCAAGTGTAGCTAG

Protein sequence

MGTEAGAIAERNSMEALAKLEYRQTLIINRISKLELAYLPNLDSEPSPISSDKADGDTVSRLSTILRTNAVNDFSFNRVPSDYYDWSLEARRDVLNAASVDHLCKSIVLVNTQAQSHVVDCSNRNNSKYYVVVVQYSAKFNAETVRSFLYSLNDGKIPKKKFNLRLAPEEISAELTGYVHNAVTCIGMKTDIPVILDEAIAKLSPDYFWLGGGEVDLKLGIRTSEFINFVKPFIIKCS

Homology

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BLAST of CmaCh06G007770.1 vs. TrEMBL
Match: A0A0A0L4A0_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_3G020620 PE=4 SV=1)

HSP 1 Score: 369.0 bits (946), Expect = 4.3e-99
Identity = 187/239 (78.24%), Postives = 203/239 (84.94%), Query Frame = 1


Query: 1   MGTEAGAIAERNSMEALAKLEYRQTLIINRISKLELAYLPNLDSEPSPISSDKADGD-TV 60
           MGTE+ A+AE+NSMEA                 L+L  LPNLDS PS + SD AD D TV
Sbjct: 1   MGTESEAMAEQNSMEA---------------QNLDLKCLPNLDSPPSSVPSDGADDDDTV 60

Query: 61  SRLSTILRTNAVNDFSFNRVPSDYYDWSLEARRDVLNAASVDHLCKSIVLVNTQAQSHVV 120
           +RLS IL TNAVNDFSF RVPSDYYDW LEARRDVL+AAS+DHLCKSIVLVNTQA SH+V
Sbjct: 61  ARLSAILTTNAVNDFSFKRVPSDYYDWPLEARRDVLDAASIDHLCKSIVLVNTQAPSHIV 120

Query: 121 DCSNRNNSKYYVVVVQYSAKFNAETVRSFLYSLNDGKIPKKKFNLRLAPEEISAELTGYV 180
           DCS+RNNSKYY+VVVQY+AKFNAET+RSFLYSLNDGKI KKKFNLRLAPEEISA+LTGY 
Sbjct: 121 DCSDRNNSKYYIVVVQYTAKFNAETIRSFLYSLNDGKIAKKKFNLRLAPEEISAKLTGYE 180

Query: 181 HNAVTCIGMKTDIPVILDEAIAKLSPDYFWLGGGEVDLKLGIRTSEFINFVKPFIIKCS 239
           HN VTCIGMKTDIPVILDEAI KL+PDYFWLGGGE DLKLGIRTSEFIN+VKPFIIKCS
Sbjct: 181 HNGVTCIGMKTDIPVILDEAIVKLNPDYFWLGGGETDLKLGIRTSEFINYVKPFIIKCS 224

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BLAST of CmaCh06G007770.1 vs. TrEMBL
Match: A0A061G599_THECC (YbaK/aminoacyl-tRNA synthetase-associated domain isoform 1 OS=Theobroma cacao GN=TCM_015994 PE=4 SV=1)

HSP 1 Score: 340.9 bits (873), Expect = 1.3e-90
Identity = 170/226 (75.22%), Postives = 195/226 (86.28%), Query Frame = 1


Query: 13  SMEALAKLEYRQTLIINRISKLELAYLPNLDSEPSPISSDKADGDTVSRLSTILRTNAVN 72
           ++ ALA+LE  QT I+ RISKLEL++LP  ++EP P SS   + D  +RLS ILR+N VN
Sbjct: 4   ALAALAELERVQTQILERISKLELSHLPQ-NAEPLPSSSPLTNDDVEARLSNILRSNGVN 63

Query: 73  DFSFNRVPSDYYDWSLEARRDVLNAASVDHLCKSIVLVNTQAQSHVVDCSNRNNSKYYVV 132
           DF F RV SDYYDWSLE+RRDVL AASV HLCKSIVLVNTQA S+V+DCS+RNNSKYYVV
Sbjct: 64  DFFFKRVSSDYYDWSLESRRDVLGAASVHHLCKSIVLVNTQAPSNVIDCSDRNNSKYYVV 123

Query: 133 VVQYSAKFNAETVRSFLYSLNDGKIPKKKFNLRLAPEEISAELTGYVHNAVTCIGMKTDI 192
           VVQY+A+FNAETV++FLY+LN GKI KKKFNLRL PEE S +LTGY HNAVTCIGM+TDI
Sbjct: 124 VVQYTARFNAETVKNFLYALNSGKISKKKFNLRLTPEETSIKLTGYEHNAVTCIGMQTDI 183

Query: 193 PVILDEAIAKLSPDYFWLGGGEVDLKLGIRTSEFINFVKPFIIKCS 239
           PVILDEAI KLSPD+FWLGGGEVDLKLGIRTSEFI+FVKPFI+ CS
Sbjct: 184 PVILDEAIVKLSPDFFWLGGGEVDLKLGIRTSEFISFVKPFIVNCS 228

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BLAST of CmaCh06G007770.1 vs. TrEMBL
Match: A0A0D2TBK3_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_008G238100 PE=4 SV=1)

HSP 1 Score: 333.6 bits (854), Expect = 2.0e-88
Identity = 170/227 (74.89%), Postives = 192/227 (84.58%), Query Frame = 1


Query: 16  ALAKLEYRQTLIINRISKLELAYLPNLDSEPSPISSDKADGDTVSR----LSTILRTNAV 75
           ALA+LE  Q  I+ RISKLEL++LP  ++EP P SS   +GD  S     LS ILR+N V
Sbjct: 4   ALAELERVQLQILRRISKLELSHLPQ-NAEPIPSSSPLTNGDASSDVEACLSNILRSNGV 63

Query: 76  NDFSFNRVPSDYYDWSLEARRDVLNAASVDHLCKSIVLVNTQAQSHVVDCSNRNNSKYYV 135
           NDF F RV SDYYDW LE+RRDVL AASV HLCKSIVLVNTQA S+V+DCS+RNNSKYYV
Sbjct: 64  NDFIFKRVASDYYDWPLESRRDVLGAASVHHLCKSIVLVNTQALSNVIDCSDRNNSKYYV 123

Query: 136 VVVQYSAKFNAETVRSFLYSLNDGKIPKKKFNLRLAPEEISAELTGYVHNAVTCIGMKTD 195
           VVVQY+A+FNAETV++FLY+LN+GKI KKKFNLRLAPEE S +LTGY HNAVTCIGM+TD
Sbjct: 124 VVVQYTARFNAETVKNFLYTLNNGKISKKKFNLRLAPEETSIKLTGYEHNAVTCIGMQTD 183

Query: 196 IPVILDEAIAKLSPDYFWLGGGEVDLKLGIRTSEFINFVKPFIIKCS 239
           IPVILDEAI KL PD+FWLGGGEVDLKLGIRTSEFINFVKPFI+ CS
Sbjct: 184 IPVILDEAIVKLDPDFFWLGGGEVDLKLGIRTSEFINFVKPFIVSCS 229

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BLAST of CmaCh06G007770.1 vs. TrEMBL
Match: A0A0B0NAC4_GOSAR (Uncharacterized protein OS=Gossypium arboreum GN=F383_12952 PE=4 SV=1)

HSP 1 Score: 332.4 bits (851), Expect = 4.5e-88
Identity = 167/227 (73.57%), Postives = 193/227 (85.02%), Query Frame = 1


Query: 16  ALAKLEYRQTLIINRISKLELAYLPNLDSEP----SPISSDKADGDTVSRLSTILRTNAV 75
           ALA+LE  Q  I+ RISKLEL++LP  ++EP    SP+++  A  D  + LS ILR+N V
Sbjct: 4   ALAELERVQLQILRRISKLELSHLPQ-NAEPIPSSSPLTNSDASSDVEACLSNILRSNGV 63

Query: 76  NDFSFNRVPSDYYDWSLEARRDVLNAASVDHLCKSIVLVNTQAQSHVVDCSNRNNSKYYV 135
           NDF F RV SDYYDW LE+RRDVL AAS+ HLCKSIVLVNTQA S+V+DCS+RNNSKYYV
Sbjct: 64  NDFIFKRVASDYYDWPLESRRDVLGAASIHHLCKSIVLVNTQAPSNVIDCSDRNNSKYYV 123

Query: 136 VVVQYSAKFNAETVRSFLYSLNDGKIPKKKFNLRLAPEEISAELTGYVHNAVTCIGMKTD 195
           VVVQY+A+FNAETV++FLY+LN+GKI KKKFNLRLAPEE S +LTGY HNAVTCIGM+TD
Sbjct: 124 VVVQYTARFNAETVKNFLYTLNNGKISKKKFNLRLAPEETSIKLTGYEHNAVTCIGMQTD 183

Query: 196 IPVILDEAIAKLSPDYFWLGGGEVDLKLGIRTSEFINFVKPFIIKCS 239
           IPVILDEAI KL PD+FWLGGGEVDLKLGIRTSEFINFVKPFI+ CS
Sbjct: 184 IPVILDEAIVKLVPDFFWLGGGEVDLKLGIRTSEFINFVKPFIVSCS 229

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BLAST of CmaCh06G007770.1 vs. TrEMBL
Match: B9SIT6_RICCO (Putative uncharacterized protein OS=Ricinus communis GN=RCOM_0540820 PE=4 SV=1)

HSP 1 Score: 332.4 bits (851), Expect = 4.5e-88
Identity = 170/231 (73.59%), Postives = 195/231 (84.42%), Query Frame = 1


Query: 14  MEA-LAKLEYRQTLIINRISKLELAYLPNLDS-----EPSPISSDKADGDTVSRLSTILR 73
           MEA +A+LE  QT I++RIS LE + L   DS      PS  + +    DT +RLS IL+
Sbjct: 1   MEAEVAELERVQTSILHRISMLERSLLHKNDSVFTSLTPSSRNVNCGGNDTEARLSAILK 60

Query: 74  TNAVNDFSFNRVPSDYYDWSLEARRDVLNAASVDHLCKSIVLVNTQAQSHVVDCSNRNNS 133
           +N VNDF F RVPS+YYDWSL+ARRDVL AASVDHLCKSIVLVNTQA S+V+DCSNRNNS
Sbjct: 61  SNGVNDFVFKRVPSNYYDWSLDARRDVLCAASVDHLCKSIVLVNTQAPSNVIDCSNRNNS 120

Query: 134 KYYVVVVQYSAKFNAETVRSFLYSLNDGKIPKKKFNLRLAPEEISAELTGYVHNAVTCIG 193
           KYYVVVVQY+A+FNAETV+++LY+LNDGKI KKKFN+RLAPEE S +LTGY HNAVTCIG
Sbjct: 121 KYYVVVVQYNARFNAETVKNYLYALNDGKIAKKKFNMRLAPEETSVQLTGYEHNAVTCIG 180

Query: 194 MKTDIPVILDEAIAKLSPDYFWLGGGEVDLKLGIRTSEFINFVKPFIIKCS 239
           MKTDIPVILDEAIA+LSPD+FWLGGGEVDLKLGIRTSEFINFV+PFI  CS
Sbjct: 181 MKTDIPVILDEAIARLSPDFFWLGGGEVDLKLGIRTSEFINFVRPFIFSCS 231

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BLAST of CmaCh06G007770.1 vs. TAIR10
Match: AT4G16510.1 (AT4G16510.1 YbaK/aminoacyl-tRNA synthetase-associated domain)

HSP 1 Score: 316.6 bits (810), Expect = 1.3e-86
Identity = 156/224 (69.64%), Postives = 188/224 (83.93%), Query Frame = 1


Query: 16  ALAKLEYRQTLIINRISKLELAYLP-NLDSEPSPISSDKADGDTVSRLSTILRTNAVNDF 75
           A A+LE  Q  I+++IS LE ++LP N  + PSP S    + +TV+RLSTIL++  VNDF
Sbjct: 10  AAAELERLQIEILHKISILESSFLPQNSSAAPSP-SLPVDENETVTRLSTILQSGGVNDF 69

Query: 76  SFNRVPSDYYDWSLEARRDVLNAASVDHLCKSIVLVNTQAQSHVVDCSNRNNSKYYVVVV 135
            F RV +DYYDW LE+RRDVL A+SVDHLCKSIVLVNTQA S+++DCS+ NNSKYYVVVV
Sbjct: 70  CFKRVATDYYDWPLESRRDVLGASSVDHLCKSIVLVNTQAASNILDCSDPNNSKYYVVVV 129

Query: 136 QYSAKFNAETVRSFLYSLNDGKIPKKKFNLRLAPEEISAELTGYVHNAVTCIGMKTDIPV 195
           QY+A+FNAE V+ FLYSLN+GKIPKK+FNLRLAPEE S +LTG+ HN VTCIGMKT+IPV
Sbjct: 130 QYTARFNAEAVKQFLYSLNEGKIPKKRFNLRLAPEETSIKLTGFEHNGVTCIGMKTNIPV 189

Query: 196 ILDEAIAKLSPDYFWLGGGEVDLKLGIRTSEFINFVKPFIIKCS 239
           ILDEAI KL PD+FWLGGGE+DLKLG+RTSEF+ FVKPFI+ CS
Sbjct: 190 ILDEAITKLKPDFFWLGGGEIDLKLGVRTSEFLEFVKPFIVPCS 232

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BLAST of CmaCh06G007770.1 vs. NCBI nr
Match: gi|659095983|ref|XP_008448863.1| (PREDICTED: uncharacterized protein LOC103490895 [Cucumis melo])

HSP 1 Score: 410.2 bits (1053), Expect = 2.4e-111
Identity = 201/238 (84.45%), Postives = 220/238 (92.44%), Query Frame = 1


Query: 1   MGTEAGAIAERNSMEALAKLEYRQTLIINRISKLELAYLPNLDSEPSPISSDKADGDTVS 60
           MG+E+ A+AE+NSMEALAKLE+RQTLI++RIS LEL YLPNLDS PS + SD AD DTV+
Sbjct: 5   MGSESEAMAEQNSMEALAKLEHRQTLILHRISNLELKYLPNLDSPPSSVPSDGADDDTVA 64

Query: 61  RLSTILRTNAVNDFSFNRVPSDYYDWSLEARRDVLNAASVDHLCKSIVLVNTQAQSHVVD 120
           RLS ILRTNAVNDFSF RVPSDYYDW+LEARRDVL+AAS+DHLCKSIVLVNTQA SHVVD
Sbjct: 65  RLSAILRTNAVNDFSFKRVPSDYYDWALEARRDVLDAASIDHLCKSIVLVNTQAPSHVVD 124

Query: 121 CSNRNNSKYYVVVVQYSAKFNAETVRSFLYSLNDGKIPKKKFNLRLAPEEISAELTGYVH 180
           CS+RNNSKYY+VVVQY+AKFNAE V+SFLYSLNDGKI KKKFNLRLAPEE S +LTGY H
Sbjct: 125 CSDRNNSKYYIVVVQYTAKFNAEAVKSFLYSLNDGKIAKKKFNLRLAPEETSVKLTGYEH 184

Query: 181 NAVTCIGMKTDIPVILDEAIAKLSPDYFWLGGGEVDLKLGIRTSEFINFVKPFIIKCS 239
           N VTCIGMKTDIPVILDEAI KL+PDYFWLGGGE+DLKLGIRTSEFINFVKPFIIKCS
Sbjct: 185 NGVTCIGMKTDIPVILDEAIVKLNPDYFWLGGGEIDLKLGIRTSEFINFVKPFIIKCS 242

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BLAST of CmaCh06G007770.1 vs. NCBI nr
Match: gi|449458934|ref|XP_004147201.1| (PREDICTED: uncharacterized protein LOC101218396 [Cucumis sativus])

HSP 1 Score: 369.0 bits (946), Expect = 6.2e-99
Identity = 187/239 (78.24%), Postives = 203/239 (84.94%), Query Frame = 1


Query: 1   MGTEAGAIAERNSMEALAKLEYRQTLIINRISKLELAYLPNLDSEPSPISSDKADGD-TV 60
           MGTE+ A+AE+NSMEA                 L+L  LPNLDS PS + SD AD D TV
Sbjct: 1   MGTESEAMAEQNSMEA---------------QNLDLKCLPNLDSPPSSVPSDGADDDDTV 60

Query: 61  SRLSTILRTNAVNDFSFNRVPSDYYDWSLEARRDVLNAASVDHLCKSIVLVNTQAQSHVV 120
           +RLS IL TNAVNDFSF RVPSDYYDW LEARRDVL+AAS+DHLCKSIVLVNTQA SH+V
Sbjct: 61  ARLSAILTTNAVNDFSFKRVPSDYYDWPLEARRDVLDAASIDHLCKSIVLVNTQAPSHIV 120

Query: 121 DCSNRNNSKYYVVVVQYSAKFNAETVRSFLYSLNDGKIPKKKFNLRLAPEEISAELTGYV 180
           DCS+RNNSKYY+VVVQY+AKFNAET+RSFLYSLNDGKI KKKFNLRLAPEEISA+LTGY 
Sbjct: 121 DCSDRNNSKYYIVVVQYTAKFNAETIRSFLYSLNDGKIAKKKFNLRLAPEEISAKLTGYE 180

Query: 181 HNAVTCIGMKTDIPVILDEAIAKLSPDYFWLGGGEVDLKLGIRTSEFINFVKPFIIKCS 239
           HN VTCIGMKTDIPVILDEAI KL+PDYFWLGGGE DLKLGIRTSEFIN+VKPFIIKCS
Sbjct: 181 HNGVTCIGMKTDIPVILDEAIVKLNPDYFWLGGGETDLKLGIRTSEFINYVKPFIIKCS 224

[Close]

BLAST of CmaCh06G007770.1 vs. NCBI nr
Match: gi|1009163966|ref|XP_015900246.1| (PREDICTED: uncharacterized protein LOC107433473 [Ziziphus jujuba])

HSP 1 Score: 342.4 bits (877), Expect = 6.2e-91
Identity = 171/228 (75.00%), Postives = 194/228 (85.09%), Query Frame = 1


Query: 15  EALAKLEYRQTLIINRISKLELAYLPNLDSEPSPISSDK----ADGDTVSRLSTILRTNA 74
           E+LA+LE  QT I+ RIS LEL++L N DS P P +SD     A+ DT + LS ILRT+ 
Sbjct: 3   ESLAELERIQTRILQRISALELSHLHNPDSAPFPSTSDHSNYDAEADTEAHLSAILRTHG 62

Query: 75  VNDFSFNRVPSDYYDWSLEARRDVLNAASVDHLCKSIVLVNTQAQSHVVDCSNRNNSKYY 134
           VNDFSF +VP DYYDW LEARR+ L AASVDHLCKSIVLVNTQAQS++VDCS+  NSKYY
Sbjct: 63  VNDFSFKKVPGDYYDWPLEARREALAAASVDHLCKSIVLVNTQAQSNIVDCSDHRNSKYY 122

Query: 135 VVVVQYSAKFNAETVRSFLYSLNDGKIPKKKFNLRLAPEEISAELTGYVHNAVTCIGMKT 194
           VVVVQY+A+FNAETV++FLY LN+GKI KKKFNLRLAPEEIS +LTGY HNAVTCIGMKT
Sbjct: 123 VVVVQYTARFNAETVKNFLYLLNNGKIAKKKFNLRLAPEEISVKLTGYEHNAVTCIGMKT 182

Query: 195 DIPVILDEAIAKLSPDYFWLGGGEVDLKLGIRTSEFINFVKPFIIKCS 239
           DIPVILDEAIAKL PD+FWLGGGE DLKLGI+TSEFINFVKPFI+ CS
Sbjct: 183 DIPVILDEAIAKLDPDFFWLGGGETDLKLGIKTSEFINFVKPFIVNCS 230

[Close]

BLAST of CmaCh06G007770.1 vs. NCBI nr
Match: gi|590676923|ref|XP_007039876.1| (YbaK/aminoacyl-tRNA synthetase-associated domain isoform 1 [Theobroma cacao])

HSP 1 Score: 340.9 bits (873), Expect = 1.8e-90
Identity = 170/226 (75.22%), Postives = 195/226 (86.28%), Query Frame = 1


Query: 13  SMEALAKLEYRQTLIINRISKLELAYLPNLDSEPSPISSDKADGDTVSRLSTILRTNAVN 72
           ++ ALA+LE  QT I+ RISKLEL++LP  ++EP P SS   + D  +RLS ILR+N VN
Sbjct: 4   ALAALAELERVQTQILERISKLELSHLPQ-NAEPLPSSSPLTNDDVEARLSNILRSNGVN 63

Query: 73  DFSFNRVPSDYYDWSLEARRDVLNAASVDHLCKSIVLVNTQAQSHVVDCSNRNNSKYYVV 132
           DF F RV SDYYDWSLE+RRDVL AASV HLCKSIVLVNTQA S+V+DCS+RNNSKYYVV
Sbjct: 64  DFFFKRVSSDYYDWSLESRRDVLGAASVHHLCKSIVLVNTQAPSNVIDCSDRNNSKYYVV 123

Query: 133 VVQYSAKFNAETVRSFLYSLNDGKIPKKKFNLRLAPEEISAELTGYVHNAVTCIGMKTDI 192
           VVQY+A+FNAETV++FLY+LN GKI KKKFNLRL PEE S +LTGY HNAVTCIGM+TDI
Sbjct: 124 VVQYTARFNAETVKNFLYALNSGKISKKKFNLRLTPEETSIKLTGYEHNAVTCIGMQTDI 183

Query: 193 PVILDEAIAKLSPDYFWLGGGEVDLKLGIRTSEFINFVKPFIIKCS 239
           PVILDEAI KLSPD+FWLGGGEVDLKLGIRTSEFI+FVKPFI+ CS
Sbjct: 184 PVILDEAIVKLSPDFFWLGGGEVDLKLGIRTSEFISFVKPFIVNCS 228

[Close]

BLAST of CmaCh06G007770.1 vs. NCBI nr
Match: gi|645266315|ref|XP_008238559.1| (PREDICTED: uncharacterized protein LOC103337186 [Prunus mume])

HSP 1 Score: 333.6 bits (854), Expect = 2.9e-88
Identity = 169/228 (74.12%), Postives = 191/228 (83.77%), Query Frame = 1


Query: 15  EALAKLEYRQTLIINRISKLELAY---LPNLDSEPSPISSDK-ADGDTVSRLSTILRTNA 74
           ++LA+LE  QT I+ R+SKLELA    LP  +S P P S+   A G T +RLS ILR N 
Sbjct: 3   KSLAELERIQTQILERVSKLELASSASLPQHNSTPIPTSTQNDAIGATEARLSAILRANG 62

Query: 75  VNDFSFNRVPSDYYDWSLEARRDVLNAASVDHLCKSIVLVNTQAQSHVVDCSNRNNSKYY 134
           V DF+F RVP+DYYDWSL+ RRDVL AASV HLCKSIVLVNTQAQS VVDCS+RNNSKYY
Sbjct: 63  VKDFAFKRVPADYYDWSLDDRRDVLGAASVHHLCKSIVLVNTQAQSSVVDCSDRNNSKYY 122

Query: 135 VVVVQYSAKFNAETVRSFLYSLNDGKIPKKKFNLRLAPEEISAELTGYVHNAVTCIGMKT 194
           VVVVQY+A+FNAE V++FLYSLN+GKI KKKFNLRLAPEE S ELTG+ HN VTC+GMKT
Sbjct: 123 VVVVQYTARFNAEAVKNFLYSLNEGKIAKKKFNLRLAPEETSVELTGFEHNGVTCVGMKT 182

Query: 195 DIPVILDEAIAKLSPDYFWLGGGEVDLKLGIRTSEFINFVKPFIIKCS 239
           DIPVILDEAI KL PD+FWLGGGE+DLKLGIRTSEFINFVKPFI+ CS
Sbjct: 183 DIPVILDEAIQKLRPDFFWLGGGEIDLKLGIRTSEFINFVKPFIVSCS 230

The following BLAST results are available for this feature:

BLAST of CmaCh06G007770.1 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of CmaCh06G007770.1 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0L4A0_CUCSA	4.3e-99	78.24	Uncharacterized protein OS=Cucumis sativus GN=Csa_3G020620 PE=4 SV=1	[more]
A0A061G599_THECC	1.3e-90	75.22	YbaK/aminoacyl-tRNA synthetase-associated domain isoform 1 OS=Theobroma cacao GN...	[more]
A0A0D2TBK3_GOSRA	2.0e-88	74.89	Uncharacterized protein OS=Gossypium raimondii GN=B456_008G238100 PE=4 SV=1	[more]
A0A0B0NAC4_GOSAR	4.5e-88	73.57	Uncharacterized protein OS=Gossypium arboreum GN=F383_12952 PE=4 SV=1	[more]
B9SIT6_RICCO	4.5e-88	73.59	Putative uncharacterized protein OS=Ricinus communis GN=RCOM_0540820 PE=4 SV=1	[more]

BLAST of CmaCh06G007770.1 vs. TAIR10


Match Name	E-value	Identity	Description
AT4G16510.1	1.3e-86	69.64	YbaK/aminoacyl-tRNA synthetase-associated domain	[more]

BLAST of CmaCh06G007770.1 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|659095983\|ref\|XP_008448863.1\|	2.4e-111	84.45	PREDICTED: uncharacterized protein LOC103490895 [Cucumis melo]	[more]
gi\|449458934\|ref\|XP_004147201.1\|	6.2e-99	78.24	PREDICTED: uncharacterized protein LOC101218396 [Cucumis sativus]	[more]
gi\|1009163966\|ref\|XP_015900246.1\|	6.2e-91	75.00	PREDICTED: uncharacterized protein LOC107433473 [Ziziphus jujuba]	[more]
gi\|590676923\|ref\|XP_007039876.1\|	1.8e-90	75.22	YbaK/aminoacyl-tRNA synthetase-associated domain isoform 1 [Theobroma cacao]	[more]
gi\|645266315\|ref\|XP_008238559.1\|	2.9e-88	74.12	PREDICTED: uncharacterized protein LOC103337186 [Prunus mume]	[more]

Annotated Terms

The following terms have been associated with this mRNA:

Vocabulary: **INTERPRO**
Term	Definition
IPR007214	YbaK/aa-tRNA-synth-assoc-dom

Vocabulary: **Molecular Function**
Term	Definition
GO:0002161	aminoacyl-tRNA editing activity

GO Annotation

GO Assignments

This mRNA is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006418	tRNA aminoacylation for protein translation
biological_process	GO:0006450	regulation of translational fidelity
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0002161	aminoacyl-tRNA editing activity
molecular_function	GO:0004812	aminoacyl-tRNA ligase activity

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
CmaCh06G007770	CmaCh06G007770	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
CmaCh06G007770.1	CmaCh06G007770.1-protein	polypeptide

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
CmaCh06G007770.1.exon.5	CmaCh06G007770.1.exon.5	exon
CmaCh06G007770.1.exon.4	CmaCh06G007770.1.exon.4	exon
CmaCh06G007770.1.exon.3	CmaCh06G007770.1.exon.3	exon
CmaCh06G007770.1.exon.2	CmaCh06G007770.1.exon.2	exon
CmaCh06G007770.1.exon.1	CmaCh06G007770.1.exon.1	exon

The following five_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
CmaCh06G007770.1.five_prime_UTR.1	CmaCh06G007770.1.five_prime_UTR.1	five_prime_UTR

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
CmaCh06G007770.1.CDS.1	CmaCh06G007770.1.CDS.1	CDS
CmaCh06G007770.1.CDS.2	CmaCh06G007770.1.CDS.2	CDS
CmaCh06G007770.1.CDS.3	CmaCh06G007770.1.CDS.3	CDS
CmaCh06G007770.1.CDS.4	CmaCh06G007770.1.CDS.4	CDS
CmaCh06G007770.1.CDS.5	CmaCh06G007770.1.CDS.5	CDS

The following three_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
CmaCh06G007770.1.three_prime_UTR.1	CmaCh06G007770.1.three_prime_UTR.1	three_prime_UTR

InterPro

Analysis Name: InterPro Annotations of Cucurbita maxima
Date Performed: 2017-05-20


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR007214	YbaK/aminoacyl-tRNA synthetase-associated domain	GENE3D	G3DSA:3.90.960.10		coord: 62..233 score: 4.5
IPR007214	YbaK/aminoacyl-tRNA synthetase-associated domain	PFAM	PF04073	tRNA_edit	coord: 102..229 score: 7.
IPR007214	YbaK/aminoacyl-tRNA synthetase-associated domain	unknown	SSF55826	YbaK/ProRS associated domain	coord: 73..235 score: 6.93
None	No IPR available	PANTHER	PTHR30411	UNCHARACTERIZED	coord: 36..238 score: 1.3
None	No IPR available	PANTHER	PTHR30411:SF4	SUBFAMILY NOT NAMED	coord: 36..238 score: 1.3