CmaCh06G005660.1 (mRNA) Cucurbita maxima (Rimu)
The following sequences are available for this feature:
Legend: exonfive_prime_UTRCDS Hold the cursor over a type above to highlight its positions in the sequence below.GCCAGTTGATTCCAATTCTCATTCTGTCGATCGTTAGATTTTTCCAATAACAATGGCGACAGCTACGTATCCGCCACCGCCACCGTATTACAGGCTCTACAAAGATTACTCCCAGAATCCGAAATCGGCACCGGAGCCTCCTCCGCTGATCGAAGGGACCTACGTGTGCTTTGGTAGCAACTACACTGTAAGATTTACTCTCGATTCCTTCTTCATCTCTCTGAATGCATCTTGAAATGTCATTTATATGTGAAGATTCGATTTCGACTCGCATTTTTGTTGAATTCTTTTAGCTGTTGGAGTCTGGTTTAACTTTTCATTTTTAAATAGATAAGATTTTTTAAGAACGTATGCTAAGAATGGTTTTAGGGTTTTTAGTTCCGAGGTTGTTCGTCTCTGCTTCCGAAATCTTTCATAATCTCCGTTCAGTGTGGACATTTTCGAGTTAGATTCTTTATTTGATTTGATCGAACTTATAGTTTAAACAGTGTCATGATAATCACTGTGATTTTGTTCCTTTTTCCTGATTGTTTCGTTTTGATTTTAGACCGATGACGTGCTTCCAAGCTTGGAAGAGCAAGGAGTGCGCCAGCTTTACCCTAGAGGACCAAATGTTGGTAAGTAGATTTAGTTTAGTTACCAGTGTTCCCAAATTTGGGTCAGAATTTGTTCTCCATCAGTTGTTTTTCTATTTGATAAAGAATCGCTATTATCCTCTCAAGTAAGGCAAATTTTATGCTCAAGTAATTATTCGTTTGATTTCTTAGATCTGTGGTGGTCTCTGTTTTCGTTCGGGGTAAGAATAATGCATGTCTGGGTAGCCTCCAAGGGGCAGCACCGTGGCCAAGGCTCACGGTCTCTGAGTACACTTACTCAAAGTCACATGTTTGAATCTCTGGGGTAGATTTTTAAGGAAAACTCTGATGTCTTCAGAGTTTGGGCCTTGGGGCTGGCGTGGATGCCAAAGGGAAGTGGGGTTTTATAATCCATCCCCAAGACATAAAGGCTGAGGAGAATTTCTGGAAACCCAACAATTGGCCGAGGCCAAAGGCAAAGAATAGGTAAAAAAAGATTTGATGAAATTACACACACATGAAACGAGCTAACCCCTTTTGGTCCCAAATCTTTGGGGTTGCTTTTGACACTGACATGTGTTCACTCGCACGTGCCCATGTAGATCTCTTCCTGTCGAAAGAAATGAGATTTTCGAGAAAAGAAGTCAAACCTAGTTTAAATATTTCAACTAAGCTCTGAGCACAAGTGTCATTGCTTTAAAGTTCTGTTAAAAAAAGAATATAAGTGTGATTGCTTCAAGTCTTGAGAGTCATTTGACATGTTAGCGTTACCAGTATATACAATGAAGATGTTTGGGAGATTCCTATTTCTATTGTCGTGGAAGTAACGAATTAAATTCCTGTTCGTGAAAATATTTGAAACTTAATTTAAAGACATGAAAATGTGTAGTGGTAGTGGCTGTCATGTTCTTAATATATTCCTCCTGTACGGTGTAAACAAAAAGAGTCTCTCTACCTGCCACTTGCTCGATGAACTTGATTTTTGATTGCTTGGAGCAACAATCTCCCCTGCAGCCCTCCCTCCCAAGTAAAGTCTTTTACCTGACATTATTATTGGTGGTTCTTCCTCAGATTTTAAGAAGGAATTGAGATCTCTCAATAGGGAACTTCAGCTTCACATCCTGGAGCTCGCCGATATTCTTGTTGAGAGGCCATCACAATACGCAAGGAGGGTAGAAGAAATATCCCTAATATTCAAAAACTTACACCACCTGCTTAATTCATTGCGTCCGCATCAGGTGGTTTAGTTTTACACATTTAAACTGGACATATTGTATTGTCAAAATTATCTAATTGTCAGGTCTATCTTCCCTTGTAGGCTAGAGCTACACTGATTCATATACTAGAACTTCAGATAGAGCGTCGGAGACAAGCTGTCGAGGATATAAAAAGGTATGTTGGTTCTGATCGAATATATTCATGTATGAATGTGTAATAACTTGTGCAATCAGCTACCCTTTCGTCACACGCCTTTTTTGGATTGAATGTCGTACTTTCTCGGGTAAATATTATTAAACCCAAAACTTAGGATTTCTTGTCCCTTTATCCATAATCATTGTTTTGTTCTATCTTATTCTTGGTGGTTGAGACAAGGATGTGTTCTTATAAAATTTTGAGCCCATAATTCATCGTTCAAGGCTTGTTTCTGTTCTGGCTGATAACTTCTGCATCATCTCACTGATTATTTGCTAATAGTACCACCATTGATATAATTTTCTTGTCTAGGAGGAGAGAAGAAGCTCAAAGATTACTCATGGAGTCCCTTGAAACTTTGGATGGACACTAG GCCAGTTGATTCCAATTCTCATTCTGTCGATCGTTAGATTTTTCCAATAACAATGGCGACAGCTACGTATCCGCCACCGCCACCGTATTACAGGCTCTACAAAGATTACTCCCAGAATCCGAAATCGGCACCGGAGCCTCCTCCGCTGATCGAAGGGACCTACGTGTGCTTTGGTAGCAACTACACTACCGATGACGTGCTTCCAAGCTTGGAAGAGCAAGGAGTGCGCCAGCTTTACCCTAGAGGACCAAATGTTGATTTTAAGAAGGAATTGAGATCTCTCAATAGGGAACTTCAGCTTCACATCCTGGAGCTCGCCGATATTCTTGTTGAGAGGCCATCACAATACGCAAGGAGGGTAGAAGAAATATCCCTAATATTCAAAAACTTACACCACCTGCTTAATTCATTGCGTCCGCATCAGGCTAGAGCTACACTGATTCATATACTAGAACTTCAGATAGAGCGTCGGAGACAAGCTGTCGAGGATATAAAAAGGAGGAGAGAAGAAGCTCAAAGATTACTCATGGAGTCCCTTGAAACTTTGGATGGACACTAG ATGGCGACAGCTACGTATCCGCCACCGCCACCGTATTACAGGCTCTACAAAGATTACTCCCAGAATCCGAAATCGGCACCGGAGCCTCCTCCGCTGATCGAAGGGACCTACGTGTGCTTTGGTAGCAACTACACTACCGATGACGTGCTTCCAAGCTTGGAAGAGCAAGGAGTGCGCCAGCTTTACCCTAGAGGACCAAATGTTGATTTTAAGAAGGAATTGAGATCTCTCAATAGGGAACTTCAGCTTCACATCCTGGAGCTCGCCGATATTCTTGTTGAGAGGCCATCACAATACGCAAGGAGGGTAGAAGAAATATCCCTAATATTCAAAAACTTACACCACCTGCTTAATTCATTGCGTCCGCATCAGGCTAGAGCTACACTGATTCATATACTAGAACTTCAGATAGAGCGTCGGAGACAAGCTGTCGAGGATATAAAAAGGAGGAGAGAAGAAGCTCAAAGATTACTCATGGAGTCCCTTGAAACTTTGGATGGACACTAG MATATYPPPPPYYRLYKDYSQNPKSAPEPPPLIEGTYVCFGSNYTTDDVLPSLEEQGVRQLYPRGPNVDFKKELRSLNRELQLHILELADILVERPSQYARRVEEISLIFKNLHHLLNSLRPHQARATLIHILELQIERRRQAVEDIKRRREEAQRLLMESLETLDGH
BLAST of CmaCh06G005660.1 vs. Swiss-Prot
Match: MED7A_ARATH (Mediator of RNA polymerase II transcription subunit 7a OS=Arabidopsis thaliana GN=MED7A PE=1 SV=1) HSP 1 Score: 285.0 bits (728), Expect = 5.2e-76 Identity = 140/167 (83.83%), Postives = 155/167 (92.81%), Query Frame = 1
BLAST of CmaCh06G005660.1 vs. Swiss-Prot
Match: MED7B_ARATH (Mediator of RNA polymerase II transcription subunit 7b OS=Arabidopsis thaliana GN=MED7B PE=1 SV=1) HSP 1 Score: 280.0 bits (715), Expect = 1.7e-74 Identity = 138/167 (82.63%), Postives = 154/167 (92.22%), Query Frame = 1
BLAST of CmaCh06G005660.1 vs. Swiss-Prot
Match: MED7_DICDI (Putative mediator of RNA polymerase II transcription subunit 7 OS=Dictyostelium discoideum GN=med7 PE=3 SV=1) HSP 1 Score: 127.5 bits (319), Expect = 1.4e-28 Identity = 66/150 (44.00%), Postives = 96/150 (64.00%), Query Frame = 1
BLAST of CmaCh06G005660.1 vs. Swiss-Prot
Match: MED7_AEDAE (Mediator of RNA polymerase II transcription subunit 7 OS=Aedes aegypti GN=MED7 PE=3 SV=1) HSP 1 Score: 118.6 bits (296), Expect = 6.5e-26 Identity = 63/161 (39.13%), Postives = 103/161 (63.98%), Query Frame = 1
BLAST of CmaCh06G005660.1 vs. Swiss-Prot
Match: MED7_ANOGA (Mediator of RNA polymerase II transcription subunit 7 OS=Anopheles gambiae GN=MED7 PE=3 SV=2) HSP 1 Score: 109.4 bits (272), Expect = 3.9e-23 Identity = 61/161 (37.89%), Postives = 98/161 (60.87%), Query Frame = 1
BLAST of CmaCh06G005660.1 vs. TrEMBL
Match: A0A0A0LBQ7_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_3G791540 PE=4 SV=1) HSP 1 Score: 321.2 bits (822), Expect = 7.3e-85 Identity = 161/168 (95.83%), Postives = 166/168 (98.81%), Query Frame = 1
BLAST of CmaCh06G005660.1 vs. TrEMBL
Match: A0A061F532_THECC (Mediator of RNA polymerase II transcription subunit 7 isoform 3 OS=Theobroma cacao GN=TCM_025030 PE=4 SV=1) HSP 1 Score: 306.6 bits (784), Expect = 1.9e-80 Identity = 153/167 (91.62%), Postives = 161/167 (96.41%), Query Frame = 1
BLAST of CmaCh06G005660.1 vs. TrEMBL
Match: A0A0B0PJ64_GOSAR (Putative mediator of RNA polymerase II transcription subunit 7 OS=Gossypium arboreum GN=F383_07728 PE=4 SV=1) HSP 1 Score: 306.2 bits (783), Expect = 2.4e-80 Identity = 151/167 (90.42%), Postives = 162/167 (97.01%), Query Frame = 1
BLAST of CmaCh06G005660.1 vs. TrEMBL
Match: A0A0D2TSC4_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_007G362800 PE=4 SV=1) HSP 1 Score: 306.2 bits (783), Expect = 2.4e-80 Identity = 151/167 (90.42%), Postives = 162/167 (97.01%), Query Frame = 1
BLAST of CmaCh06G005660.1 vs. TrEMBL
Match: V4SW18_9ROSI (Uncharacterized protein OS=Citrus clementina GN=CICLE_v10012936mg PE=4 SV=1) HSP 1 Score: 305.8 bits (782), Expect = 3.2e-80 Identity = 151/167 (90.42%), Postives = 160/167 (95.81%), Query Frame = 1
BLAST of CmaCh06G005660.1 vs. TAIR10
Match: AT5G03220.1 (AT5G03220.1 Mediator complex, subunit Med7) HSP 1 Score: 285.0 bits (728), Expect = 2.9e-77 Identity = 140/167 (83.83%), Postives = 155/167 (92.81%), Query Frame = 1
BLAST of CmaCh06G005660.1 vs. TAIR10
Match: AT5G03500.1 (AT5G03500.1 Mediator complex, subunit Med7) HSP 1 Score: 280.0 bits (715), Expect = 9.4e-76 Identity = 138/167 (82.63%), Postives = 154/167 (92.22%), Query Frame = 1
BLAST of CmaCh06G005660.1 vs. NCBI nr
Match: gi|449437536|ref|XP_004136548.1| (PREDICTED: mediator of RNA polymerase II transcription subunit 7a-like [Cucumis sativus]) HSP 1 Score: 321.2 bits (822), Expect = 1.0e-84 Identity = 161/168 (95.83%), Postives = 166/168 (98.81%), Query Frame = 1
BLAST of CmaCh06G005660.1 vs. NCBI nr
Match: gi|1009161423|ref|XP_015898889.1| (PREDICTED: mediator of RNA polymerase II transcription subunit 7a [Ziziphus jujuba]) HSP 1 Score: 307.4 bits (786), Expect = 1.6e-80 Identity = 152/168 (90.48%), Postives = 161/168 (95.83%), Query Frame = 1
BLAST of CmaCh06G005660.1 vs. NCBI nr
Match: gi|590637458|ref|XP_007029122.1| (Mediator of RNA polymerase II transcription subunit 7 isoform 3 [Theobroma cacao]) HSP 1 Score: 306.6 bits (784), Expect = 2.7e-80 Identity = 153/167 (91.62%), Postives = 161/167 (96.41%), Query Frame = 1
BLAST of CmaCh06G005660.1 vs. NCBI nr
Match: gi|823199741|ref|XP_012435009.1| (PREDICTED: mediator of RNA polymerase II transcription subunit 7a [Gossypium raimondii]) HSP 1 Score: 306.2 bits (783), Expect = 3.5e-80 Identity = 151/167 (90.42%), Postives = 162/167 (97.01%), Query Frame = 1
BLAST of CmaCh06G005660.1 vs. NCBI nr
Match: gi|567874731|ref|XP_006429955.1| (hypothetical protein CICLE_v10012936mg [Citrus clementina]) HSP 1 Score: 305.8 bits (782), Expect = 4.6e-80 Identity = 151/167 (90.42%), Postives = 160/167 (95.81%), Query Frame = 1
The following BLAST results are available for this feature:
The following terms have been associated with this mRNA:
GO Assignments
This mRNA is annotated with the following GO terms.
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following exon feature(s) are a part of this mRNA:
The following five_prime_UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Analysis Name: InterPro Annotations of Cucurbita maxima
Date Performed: 2017-05-20
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