CmaCh06G005420.1 (mRNA) Cucurbita maxima (Rimu)
The following sequences are available for this feature:
Legend: exonCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.ATGGGTGGGGTATGGAGAGGCGTCTCTGGCGAATTGGATTCACCCGCCGGCGACGGTGTTACGTCTAATAATCCCAGCACTTGGTCTTCCGGCGATCGATGTTCGACTAGAAAAGTGGTGAAGTCGCAGTGCAAGACGGAGGAGGTCGAGCCCGGGAAATTCGTCAGGAAGTGCGAGAGAACCGAGGAGATTCTCAGAGACTGCATCGGAAGGTATGTGCATCCCCGTTCCTCTGATTTCTGTTGTCCTGTGACAATTTGTTTTAACCTAACTATTATTGTCTTTCGAATTAAGAACTTAGTTTTTTACGGAAGTGTGAAGAAAAGAAAATTGGTTCGTTCTATTTGTTGTTGGCAAAGAGAAATTGTTAAACGTAGGTTTCGTTTCTTTATTTGGAAGCAAATAGGTGTGATCCACATGGCTGTTTCTAAGTTTGATTTCTTCTTTATTGTTTGGGGATATATCGTAGTTCTAAATTTTGAAGTATAATGTGCTAGGCGAAGGCTGATTCCTACGACTTGTTGAGTGTGTTAGGTTGAATGGCTCAATGACCTGTCCTAGGGTCACGACCTCATGTATTTATAGATGTGTATAATGAAGATTACATTCTAAATCATAGATTTAGTAACAAACCATGAAATCATAGATTTGGTAACAAAACTATGAAATCATAGATTTGGTAACAAACCAGTAAATCGTAGATTTGGTAACAAACTAGTAGATCACTAGATTATCTTACTATACACAAATATGATCTATTCTACGTTTAACACCCCCCTCAATCTGGACGATGTACTACTAAGTTCAGATTGCGCCTAAAATTGCTAAAAGAAGGAGCTGACAATGGCTTTGTCATGATATCGGCGAGCTGATCCTTGGAAGAAATGAGTCGAACATCAAGCTGACGAGTCGATACTCGTTCACGAACGAAGTGATAATCAACCTCAACATGCTTCGTCCGTCGATGAAAAATTGGATTGGCGGACAGGTAGGTGGCACCAATGTTGTCACACCACAGACTAGGTGCTCGCGCTTGCGAGATCCTGAGCTCACGCAAGAGAACTTGGATCCAAATTAATTCGGCAGTGGCATCAACAACTGCCTTATATTCAACCTCCGTAGTAGAACGAGAAACTGTTGATTGTTTCCTCGAACTCCAAGAGACAAGATTGCCACCAAAGAAGATTACATAGCCTCCAGTGCTTCGACGATCATCAGGATTCCCGACCCAATCAGCATCTGAAAAGGCACTCAACAAATTAGTGTTGGACTTTGTAAGACACAAACACATATCAATAGTGTCATGTAGATAACGGAGAATTTGTTTGACGGCCGCCCAATGTATAAATGTCGGGGAGGACATGAACTGACACACTCTATTGACACAGAATGATATATCAGGACGTGTCAGAGACAAATATTGGAGAGCACCAACGACACTCCGATAGCGAGTAGTATCCTCAGGCGAAAGCTTTTCACCACCATCCAATAACAACTTCTCACTAGGAAGCATAGGTGTGAGCACACCTTTGGAGGTGAGCATATTGGTTCTGGACAATAAATCTTGAATGTATTTATGTTGTGTCAGAATAAGTCCATTGGAAGTATGGCGGACCTCAATCCCAAGAAAATAACTCAAAATGCCAAGATCCTTGACGGCAAAATCATCCTGAAGCTGTGTAAGAAGTTTCTCAGTAGCCGTAGAAGATGAGTTGATAATAATAATGTCATCAACATAGATGAGGATATACATTTGAATGCCCGTCTGGTTAAAAATGAAAAGAGAAACATCAGCCTTTGAAGGTGTAAAATCCAACTGTAATAATTTGGAGGTAAGGCGAGAAAACCAGGCACGCGGAGCTTGTTTAAGGCCATAAAGCGACTTATCCAGCTTGCAGAGATAACCAGGGTGTTGAGAATCCACAAATCCAGGGGGCTGCTTCATATAAACATCTTTATTAAGAAAGCCATGAAGAAAAGCATTTTGAATATCAATCTGCCAAATAGCCCAACCACGAGAAATAGCAAAAGATAGTAAGAGCCGAATGGTAGTGGGCTTAACAACTGGACTAAAGGTATCATCATAATCAACACCATACTGCTGTTTAAACCCTTTAGCAACCAGGCGTGCTTTGTAGCGATCAACAGAGCCATCTGGCTTTTGCTTGAGTTTGAAAACCCATTTGCAATCAATAACGTTAAGACCAGCACGAGGAGGAACTAAGTTCCATGTCTTATTTTTTTGAAGTGCCTGAAATTCATCATTTATTGCCTGACGCTAGAGGGGATGCTCCATAGCAGTAATATGTGAAGTAGGTTCAGAGGCAGAAGACCGAACTACAAAATATGTTATTGTTCCATTTGTACGCACCTTGGGTTTCTTGATATTGTGCTTCAATCGAGTACCATACGGATGAGTAGTAGGTACAGGATCCACATTTGAGGGGACAGCCGTATCAGCCGTTGCGAGGGGAGCAACTGATGCTACAGCAGTTGGTTGACCAACGGCCGAGGATTCGACCGGGCATTGTGCAATATCATCTGCTGGCGGAGGAGTCGAGGCCTCAATCATTGGCGGAACAACCAACGCCGATTCGCATGGTAGCGATGCGGAGGATTGTTGCGGCAATTCCGAAGCTGATGTAGACACCAAATTTTCTGCATCCAAAGAGTCAGTAGGCACAGACATAAGCATGTGATCATTCTCCAAATTAGTACGGCTATTACCCAAATGCAAGGCACAAATCAGGGGCATTATGCGTCGACTGCATGATTGGGGAAGAAATAGGTGGGGCTCTCTTGAATGGAAAAACATTTTTATCAAATATGACGTCTCTAGACATATAGACACGACCAGAATCTGTGTCAAGACACTTATACCCTTTATGTAAAGAACTGTAGCCTAGAAAGACACATTCCTTTGATCGAACAGAGAGCTTTTGTTTGTTATAAGGACGAAGATGAGGCCAACAAGCACACCCAAAATTTTTTAATAAGGAGTAATTTGGTGGGGTATGAAAAAGATGCTCTAAGGGGCATTTGTTATTGATGACACAAGTAGGAAGACGATTGATGAGATATGTGGCTGTAAGAAACGCGTCGTCCCAAAATTTAATAGGTACATGAGCATGAGCTAGAAGGGCTAGGCCAGTTTCAACAATATGACGGTGCTTGCATTCAGCAGACCCATTTTGTTGATGTGTGTGAGGGCACGAAACACGATGAGCAATTCCAAGGGAACGAAAAAATGTGTTATGAATTTTCTGATATTCCCCACCCCAATTAGATTGGACCCACTTGATTTTAGTATCTAGGAGGCGCTCAACATGAGCTTGGAATTGCAAAAATATACGAGGAGCTTCTGTACGATCATGCATCAAATAGATCCACGAAAATTTACTGAAATCATCAATGAAGCTTATATAATATTTAAAACCTCCAACAGATGGAGGCGCAGGGCCCCAAACATCCGAAAAAATAAGTTTCAAAGGTGACGAAGACCTATGGAAAGAACTAGTATATGGTAACTGATGACTTTTTGCTGACTGACACGCATTACAAACTGACAAAGATGACTCACTAGCACACGAAATATTATTGAGACGCATAATTGATTTTACTACTTGAGATGAAGGATGTCCAAGACGTGCATGCCATTGGGCGTGAGTAGTAGATCTGCTCACCAAGGCGTGCTTGAGATCATCGACATCGGATGGCTTAATAGGATAAAGACCAGATTCACACCTCCCATCTAGGAGACTTTTCCTCGACCGTCGATCCTTTATAGAAAAATGCCAAGGATGGAATTCAAAAAATACGTCATTATTACGAGAAAATTTATGAACGGAAAGAAGATGTTTGGAAATTTCAGGCACATGCAAAATATTATGCAATGCAAGAGGACGAGTAGCAGTATTAATTAGAGAATGACCAGTATGCAAAACACGCAAACCTGCTCCATTGCCGATTTGAACTTGTTCACCTCCATGATAGCGTTCACGCACAGCGAGACGATCTAGGTCACTGGTGATATGATCCGTAGCGCCTGTGTCGCTGTACCAATTTGGGTCAATCTTGTAAGAGGAAGTAGCCGCCAGTGCCGTAGGAGGAGCAGAAGAAGGTTCATCTTGATAGGACTCATCCATCCTATGCCAGCAGCGGATAGCAGTATGCCCCACTTTGTCGCAGATCTGGCAGGAAGGACGAGTAGAAGGGCCACGACGATCACCAGCAGGACGAGAGGGTGAATAACCTTGAGAACGACCACGACCACGATCCCTACGCCCACGATTCTTCTGCTGACCACCACGACCAGGATAATTGGTAGAAGATCCAAGATTTAACTGAAGTTCAGCCTGGTGTTGTAGTTGGCGAGCTTCATACGTCATTAAATGTGCAAACACATCATCAAGCGTGAGGGATTCACTCTTGGTAGTCATTGAGGTGACGAAGGGATCATAGTCAGGGCCAAGACCAGCGAGAAGATACGCGATCACATCATCATCCTGCAAGGCAGAGCCGGCGGCGGCCAGCTAGGTGGCTAGCCCTTTGATCTTGCGAAAATAATTTGCAGCAAATTGATCTCATTTCTCGGACGTGACGTGCTCAACACGAATCTAAGTAGTGCGAGCACGAGTTGACGACGAAAACATCTGTTGCAAGGTATCCCACGCCTCCTTGGACGTAGTAGCAGCAACCACATCGTGAAGAATCTCCTCAGACATGGAGGAGAGAAGACCGCTAAGGACCTGTTGATCCTGATCATACCACTGATTATAGGCCGGATTAGAGACCAGCTCAGCACCAGCCGCAGTTGAGGAAGGGACCAACTTGGCAGGTGCTGCATTGGTGCCATCGAGGTAGTCCATAAGCTTCGTACTCCGTAGGTAGGGGAGGAGCTGGGCGCGCCATATGATGAAGTTGTTTTTGGTTAGACGAATTGTGACAGCATGGTGTAGATGAAAAATTGTTAGGTTGAATGGTAGACATTGGATTGGCGTTGGAATGGTAGACATTGTTAGGTTGAATGGTAGATGTGGGGTTACATTCAAGAGTGAACTTCTGTTTGATGCGTTGAAACTACGGAGCCATTTGGGGGGTTTATTTTCTGATTTTGTTGCCGTGATTGGTTGTTTTAATGGAATCTTAGAGGGATGGACATTGAAATTGCTAGGTGCTAGGCTTACTGTTTGACATGTGAGTGATGATTTTTCTTGGGTTATTTGTATTGAAGGTTGAAGAATCATGACTTACCGGTTACCCCATAATTTTGTTCACTATGTTTTTTTGGCCTAAATGACCAACATATAAGAATATTGATTTTTTCTTCTTGGTTATTTCACACACACACTTTCATTTCGGGTTCCTTCTGTCGAATTTTCTTCCAAATTTTGATAATTCATCACATAGAAAATGTAGATGCTTGCAAGGGACCGGAAAGAATCAAAATTTCCACACCCATTCAACATTTCATCCTAATAATTGTAAAAGCCTCTCTGGTGGTTTATATTCTTAAAGCACATCATATGAAAATTTTGCAGTGTCCTCCCATTTAAGGGACCTAGCAAATGAATAAATAATGTGTTTAACGTTCTCTTTCTTAAAGTGTATGGGTTTTCATAATTTGGAAAAATAAGAATGAGAGGAAGGAACAGATAAATGAAAGAAGAGACAAAAACCGAGTAGAAACTGAGGATGTGTTTTGGAAGATGAGAATGAGAGTGATGAAGGGGCATATGAAATAAGAGGGTTGAAATGTGCTTTTTCTATCGTTCCTTAAGCGAAGTACAACATCTCTAAACAATTAAAGTGAAAGAATGTAGCTGAGGTTATTTAATATATAAGAGCTCCTTCTCTTTAAAATCTCATCTGTGTTGTGATATAGAAAGGCAGGTTTAGGAAAAATACGTTTCTTGAATGGAAAATTATGAAGATGACCGAGGTATGCATTTCCTGGATTGCACTTGTGCTGGCTCGGTGTTTGATGGTTGAATGACTATGACATGATTGGAACTTATTGGGTAGTGCCTTGAGCCTCAGTTAATAGAATCCATGCATCATATATTGGAAAATATTGATTAGCCCTTAGATGAATGGTGATTAGGAACTTGAAGGGCAGTGTCTGGGAATATTTTTTTCTGAGCCTGCCAGACGGAAGCTATTGGAACTCGTTACTGTTGTACATGATCGGTTGCCAACTTGAAAATAATAAATTTCTTAACCTACATTGATGCTGCTTTAATTGCATGGAAGATCAAGTTGGAAAATATAGTAATCCTGCCTACATTGAATTCGAGTTCGAGCAGCCATCTACCGTGGCAAAAACCGCCAGAAAGCCTTACACTTGATATGTTGTAAGAGTATCACATGATATGATATTGGAGCTAGGAGTGAGGAAACTCTTTTCATTTTACGGATTGAACCAGCTGCTTTTGCTTCTTTAATGTGCTATGCTAAATTCTTAACACATGATGACTTCGGTTTTTGTGTTACCATGTTTCGATAGTATGTACGTATATCATTTGATAGAACCCAAAGTGGAAATGCATTTATAAAAGAACACATGTAAGGAATTAAAGAGCTCTTCCATCCCCCTCCAATCTATCAAAACCATTAGGAACTTGTATCCTCTAGTTACTCATCTTCCCTTTTTTAAAATTACTTGCTTCTGGTTAGTTACTTTAGGCCTCTAGGTTGCTTCCCTGTTTCAACTGTTCTCCCCTTTTAGTTCAATTAAAGTGAGCTGAAGAGCTTCCTATCAACTATACGAGTCATATGACTAAGTCATAGTTGCTTTGTTTCTTTACAGGCCGGTCGAAGTGATACAATCCAATAGGGAATTTACAGAAGAGGATGTAACGAATGAGGTGGTTAATAATAGGTCATTCTCGTCAGGATCATCAGAATATCAACCATTTAATTTCCCTGGACTTCGTAGCGATATTGAAGCCATTGAACACAGCCTCTTTGGTAGCATGAAGGGGTTCTTTGATGCAGCTGAAGAGATTAGGAATGGTTTCTTTGGTTCTTTCAGAGATCCACCCGTATTCAACAGAGAGCCTTCTTCCTCCCCATCGATGAGACAAAACGAGCCCGACTCTGGTCACGTTGACCTATCTGGATTGGCCAGGGATGTCTGATTACCCAGAATGAACCCGATCGTCCTTTTTTTTTTAACAGATGTTAGATACAAGGACAGTATATCATCATTATCGTGGTGGATGACAATTGATAATCAGTTGAATAAATGTTTTTCCAGTCTAAGCATTGTTATCCAATATGTGCTCATAGATATTGACATATTGGTTGATTATGTGTGGAATCTGACTTTTGAGTAGTTCAAAATGGTTGGTTTTGAAAAACCAACCAAGGTTTTAGTTGTAAAAAGCTCTACTTTTGTAATACATGAACTTAATAGGAAGAATATTTTACGTTCATAGTGGAGGGCCATTGACCCAGTTTATATTTTGTATAAGATAATGATAGTGTACCATTTAATCCATAAACTAGTTTAATGTACC ATGGGTGGGGTATGGAGAGGCGTCTCTGGCGAATTGGATTCACCCGCCGGCGACGGTGTTACGTCTAATAATCCCAGCACTTGGTCTTCCGGCGATCGATGTTCGACTAGAAAAGTGGTGAAGTCGCAGTGCAAGACGGAGGAGGTCGAGCCCGGGAAATTCGTCAGGAAGTGCGAGAGAACCGAGGAGATTCTCAGAGACTGCATCGGAAGGCCGGTCGAAGTGATACAATCCAATAGGGAATTTACAGAAGAGGATGTAACGAATGAGGTGGTTAATAATAGGTCATTCTCGTCAGGATCATCAGAATATCAACCATTTAATTTCCCTGGACTTCGTAGCGATATTGAAGCCATTGAACACAGCCTCTTTGGTAGCATGAAGGGGTTCTTTGATGCAGCTGAAGAGATTAGGAATGGTTTCTTTGGTTCTTTCAGAGATCCACCCGTATTCAACAGAGAGCCTTCTTCCTCCCCATCGATGAGACAAAACGAGCCCGACTCTGGTCACGTTGACCTATCTGGATTGGCCAGGGATGTCTGATTACCCAGAATGAACCCGATCGTCCTTTTTTTTTTAACAGATGTTAGATACAAGGACAGTATATCATCATTATCGTGGTGGATGACAATTGATAATCAGTTGAATAAATGTTTTTCCAGTCTAAGCATTGTTATCCAATATGTGCTCATAGATATTGACATATTGGTTGATTATGTGTGGAATCTGACTTTTGAGTAGTTCAAAATGGTTGGTTTTGAAAAACCAACCAAGGTTTTAGTTGTAAAAAGCTCTACTTTTGTAATACATGAACTTAATAGGAAGAATATTTTACGTTCATAGTGGAGGGCCATTGACCCAGTTTATATTTTGTATAAGATAATGATAGTGTACCATTTAATCCATAAACTAGTTTAATGTACC ATGGGTGGGGTATGGAGAGGCGTCTCTGGCGAATTGGATTCACCCGCCGGCGACGGTGTTACGTCTAATAATCCCAGCACTTGGTCTTCCGGCGATCGATGTTCGACTAGAAAAGTGGTGAAGTCGCAGTGCAAGACGGAGGAGGTCGAGCCCGGGAAATTCGTCAGGAAGTGCGAGAGAACCGAGGAGATTCTCAGAGACTGCATCGGAAGGCCGGTCGAAGTGATACAATCCAATAGGGAATTTACAGAAGAGGATGTAACGAATGAGGTGGTTAATAATAGGTCATTCTCGTCAGGATCATCAGAATATCAACCATTTAATTTCCCTGGACTTCGTAGCGATATTGAAGCCATTGAACACAGCCTCTTTGGTAGCATGAAGGGGTTCTTTGATGCAGCTGAAGAGATTAGGAATGGTTTCTTTGGTTCTTTCAGAGATCCACCCGTATTCAACAGAGAGCCTTCTTCCTCCCCATCGATGAGACAAAACGAGCCCGACTCTGGTCACGTTGACCTATCTGGATTGGCCAGGGATGTCTGA MGGVWRGVSGELDSPAGDGVTSNNPSTWSSGDRCSTRKVVKSQCKTEEVEPGKFVRKCERTEEILRDCIGRPVEVIQSNREFTEEDVTNEVVNNRSFSSGSSEYQPFNFPGLRSDIEAIEHSLFGSMKGFFDAAEEIRNGFFGSFRDPPVFNREPSSSPSMRQNEPDSGHVDLSGLARDV
BLAST of CmaCh06G005420.1 vs. TrEMBL
Match: A0A0A0LGU7_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_3G782830 PE=4 SV=1) HSP 1 Score: 245.0 bits (624), Expect = 7.1e-62 Identity = 134/198 (67.68%), Postives = 153/198 (77.27%), Query Frame = 1
BLAST of CmaCh06G005420.1 vs. TrEMBL
Match: W9SK10_9ROSA (Uncharacterized protein OS=Morus notabilis GN=L484_016892 PE=4 SV=1) HSP 1 Score: 197.2 bits (500), Expect = 1.7e-47 Identity = 114/216 (52.78%), Postives = 139/216 (64.35%), Query Frame = 1
BLAST of CmaCh06G005420.1 vs. TrEMBL
Match: M5VR87_PRUPE (Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa011952mg PE=4 SV=1) HSP 1 Score: 197.2 bits (500), Expect = 1.7e-47 Identity = 114/197 (57.87%), Postives = 135/197 (68.53%), Query Frame = 1
BLAST of CmaCh06G005420.1 vs. TrEMBL
Match: A0A165YSC4_DAUCA (Uncharacterized protein OS=Daucus carota subsp. sativus GN=DCAR_013453 PE=4 SV=1) HSP 1 Score: 188.7 bits (478), Expect = 6.1e-45 Identity = 99/195 (50.77%), Postives = 135/195 (69.23%), Query Frame = 1
BLAST of CmaCh06G005420.1 vs. TrEMBL
Match: A0A059A3D5_EUCGR (Uncharacterized protein OS=Eucalyptus grandis GN=EUGRSUZ_K01914 PE=4 SV=1) HSP 1 Score: 187.6 bits (475), Expect = 1.3e-44 Identity = 110/203 (54.19%), Postives = 137/203 (67.49%), Query Frame = 1
BLAST of CmaCh06G005420.1 vs. TAIR10
Match: AT2G35900.1 (AT2G35900.1 unknown protein) HSP 1 Score: 147.9 bits (372), Expect = 6.0e-36 Identity = 86/194 (44.33%), Postives = 114/194 (58.76%), Query Frame = 1
BLAST of CmaCh06G005420.1 vs. NCBI nr
Match: gi|659084564|ref|XP_008442953.1| (PREDICTED: uncharacterized protein LOC103486704 [Cucumis melo]) HSP 1 Score: 257.7 bits (657), Expect = 1.5e-65 Identity = 137/195 (70.26%), Postives = 155/195 (79.49%), Query Frame = 1
BLAST of CmaCh06G005420.1 vs. NCBI nr
Match: gi|449437498|ref|XP_004136529.1| (PREDICTED: uncharacterized protein LOC101211397 [Cucumis sativus]) HSP 1 Score: 245.0 bits (624), Expect = 1.0e-61 Identity = 134/198 (67.68%), Postives = 153/198 (77.27%), Query Frame = 1
BLAST of CmaCh06G005420.1 vs. NCBI nr
Match: gi|703139374|ref|XP_010106964.1| (hypothetical protein L484_016892 [Morus notabilis]) HSP 1 Score: 197.2 bits (500), Expect = 2.4e-47 Identity = 114/216 (52.78%), Postives = 139/216 (64.35%), Query Frame = 1
BLAST of CmaCh06G005420.1 vs. NCBI nr
Match: gi|595807540|ref|XP_007202625.1| (hypothetical protein PRUPE_ppa011952mg [Prunus persica]) HSP 1 Score: 197.2 bits (500), Expect = 2.4e-47 Identity = 114/197 (57.87%), Postives = 135/197 (68.53%), Query Frame = 1
BLAST of CmaCh06G005420.1 vs. NCBI nr
Match: gi|694369236|ref|XP_009362665.1| (PREDICTED: uncharacterized protein LOC103952723 [Pyrus x bretschneideri]) HSP 1 Score: 188.7 bits (478), Expect = 8.7e-45 Identity = 108/200 (54.00%), Postives = 137/200 (68.50%), Query Frame = 1
The following BLAST results are available for this feature:
The following terms have been associated with this mRNA:
GO Assignments
This mRNA is annotated with the following GO terms.
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following exon feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following three_prime_UTR feature(s) are a part of this mRNA:
Analysis Name: InterPro Annotations of Cucurbita maxima
Date Performed: 2017-05-20
|