CmaCh06G001690.1 (mRNA) Cucurbita maxima (Rimu) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CmaCh06G001690.1
Type	mRNA
Organism	Cucurbita maxima (Cucurbita maxima (Rimu))
Description	Ring finger protein
Location	Cma_Chr06 : 839443 .. 840027 (+)
Sequence length	585

Genome Viewer

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGACTCGTTATTTGCAAGCTTTGGCGGGGAATACTTCCTCGGCGACGGCGACAGCGACGGCGCCGCCCCCAGAGGCGGTGGCTATAGAGTCGGACTTCGTGGTGATTCTGGCGGCGCTACTGTGTGCTCTAATTTGTATGGTGGGGCTGATAGCGGTGGCTCGGTGCGCGTGGCTCCGGCGTGGCAGTAACGGTGGCGGTGCAGGAAATCAGGCGTCAGCGAACAGGGGATTGAAGAAGAAAATCCTGCAATCCCTTCCGAAATTCGCGTACAGAGCATCGGGGTCGGGCGGAGAAGGGAAATTCGCGGCGGAATGTGCGATCTGCCTGGCGGAATTCCTAGACGGGGAGGAGATCCGACAACTGCCGCAGTGTGGCCATTGCTTCCACGTCAGCTGCGTAGACACGTGGCTGAGCTCCCACTCGTCCTGCCCCTCTTGCCGCCAGATTCTGGTAGTGGCCAGATGCCAGAAGTGCGGCGATTTCCCGGCCGTCGTCCACGGCGACGATCACAACAACGAGGAGGAGCAAAAGAGGAGGGAAGATAACAATGGTAACAACAGGGGTTTGGGATTTTTGCCTTGA

mRNA sequence

ATGACTCGTTATTTGCAAGCTTTGGCGGGGAATACTTCCTCGGCGACGGCGACAGCGACGGCGCCGCCCCCAGAGGCGGTGGCTATAGAGTCGGACTTCGTGGTGATTCTGGCGGCGCTACTGTGTGCTCTAATTTGTATGGTGGGGCTGATAGCGGTGGCTCGGTGCGCGTGGCTCCGGCGTGGCAGTAACGGTGGCGGTGCAGGAAATCAGGCGTCAGCGAACAGGGGATTGAAGAAGAAAATCCTGCAATCCCTTCCGAAATTCGCGTACAGAGCATCGGGGTCGGGCGGAGAAGGGAAATTCGCGGCGGAATGTGCGATCTGCCTGGCGGAATTCCTAGACGGGGAGGAGATCCGACAACTGCCGCAGTGTGGCCATTGCTTCCACGTCAGCTGCGTAGACACGTGGCTGAGCTCCCACTCGTCCTGCCCCTCTTGCCGCCAGATTCTGGTAGTGGCCAGATGCCAGAAGTGCGGCGATTTCCCGGCCGTCGTCCACGGCGACGATCACAACAACGAGGAGGAGCAAAAGAGGAGGGAAGATAACAATGGTAACAACAGGGGTTTGGGATTTTTGCCTTGA

Coding sequence (CDS)

ATGACTCGTTATTTGCAAGCTTTGGCGGGGAATACTTCCTCGGCGACGGCGACAGCGACGGCGCCGCCCCCAGAGGCGGTGGCTATAGAGTCGGACTTCGTGGTGATTCTGGCGGCGCTACTGTGTGCTCTAATTTGTATGGTGGGGCTGATAGCGGTGGCTCGGTGCGCGTGGCTCCGGCGTGGCAGTAACGGTGGCGGTGCAGGAAATCAGGCGTCAGCGAACAGGGGATTGAAGAAGAAAATCCTGCAATCCCTTCCGAAATTCGCGTACAGAGCATCGGGGTCGGGCGGAGAAGGGAAATTCGCGGCGGAATGTGCGATCTGCCTGGCGGAATTCCTAGACGGGGAGGAGATCCGACAACTGCCGCAGTGTGGCCATTGCTTCCACGTCAGCTGCGTAGACACGTGGCTGAGCTCCCACTCGTCCTGCCCCTCTTGCCGCCAGATTCTGGTAGTGGCCAGATGCCAGAAGTGCGGCGATTTCCCGGCCGTCGTCCACGGCGACGATCACAACAACGAGGAGGAGCAAAAGAGGAGGGAAGATAACAATGGTAACAACAGGGGTTTGGGATTTTTGCCTTGA

Protein sequence

MTRYLQALAGNTSSATATATAPPPEAVAIESDFVVILAALLCALICMVGLIAVARCAWLRRGSNGGGAGNQASANRGLKKKILQSLPKFAYRASGSGGEGKFAAECAICLAEFLDGEEIRQLPQCGHCFHVSCVDTWLSSHSSCPSCRQILVVARCQKCGDFPAVVHGDDHNNEEEQKRREDNNGNNRGLGFLP

Homology

[Close]

BLAST of CmaCh06G001690.1 vs. Swiss-Prot
Match: ATL80_ARATH (RING-H2 finger protein ATL80 OS=Arabidopsis thaliana GN=ATL80 PE=2 SV=1)

HSP 1 Score: 177.9 bits (450), Expect = 1.0e-43
Identity = 94/146 (64.38%), Postives = 110/146 (75.34%), Query Frame = 1


Query: 28  AIESDFVVILAALLCALICMVGLIAVARCAWLRRGSNGGG--AGNQ--------ASANRG 87
           A+ SD VVILAALLCALIC++GLIAV+RC WLRR + G    +G+Q        A+AN+G
Sbjct: 25  ALNSDLVVILAALLCALICVLGLIAVSRCVWLRRLAAGNRTVSGSQTQSPQPPVAAANKG 84

Query: 88  LKKKILQSLPKFAYRASGSGGEGKFAAECAICLAEFLDGEEIRQLPQCGHCFHVSCVDTW 147
           LKKK+LQSLPK  +  S    E +  AECAICLAEF  G+E+R LPQCGH FHV+C+DTW
Sbjct: 85  LKKKVLQSLPKLTF--SPESPESEKFAECAICLAEFSAGDELRVLPQCGHGFHVACIDTW 144

Query: 148 LSSHSSCPSCRQILVVARCQKCGDFP 164
           L SHSSCPSCRQILVVARC KCG  P
Sbjct: 145 LGSHSSCPSCRQILVVARCHKCGGLP 168

[Close]

BLAST of CmaCh06G001690.1 vs. Swiss-Prot
Match: ATL45_ARATH (Probable E3 ubiquitin-protein ligase ATL45 OS=Arabidopsis thaliana GN=ATL45 PE=2 SV=1)

HSP 1 Score: 167.9 bits (424), Expect = 1.1e-40
Identity = 90/164 (54.88%), Postives = 109/164 (66.46%), Query Frame = 1


Query: 12  TSSATATATAPPPEAV-AIESDFVVILAALLCALICMVGLIAVARCAWLRR--GSNGGGA 71
           +S    TA+ PPPE + A E+D VVIL+ALLCAL+C+ GL AVARCAWLRR  G N    
Sbjct: 4   SSRFLGTASPPPPEEILAAETDMVVILSALLCALVCVAGLAAVARCAWLRRLTGVNPAAV 63

Query: 72  GNQASANRGLKKKILQSLPKFAYRASGSG------------GEGKFAAECAICLAEFLDG 131
           G     N+GLKKK LQ+LPK  Y AS S             G+G  + ECAIC+ EF +G
Sbjct: 64  GEAPPPNKGLKKKALQALPKSTYTASASTAAAADDLPCSSVGDGDSSTECAICITEFSEG 123

Query: 132 EEIRQLPQCGHCFHVSCVDTWLSSHSSCPSCRQILVVARCQKCG 161
           EEIR LP C H FHV+C+D WL+S SSCPSCR+ILV  +C +CG
Sbjct: 124 EEIRILPLCSHAFHVACIDKWLTSRSSCPSCRRILVPVKCDRCG 167

[Close]

BLAST of CmaCh06G001690.1 vs. Swiss-Prot
Match: ATL44_ARATH (Probable E3 ubiquitin-protein ligase ATL44 OS=Arabidopsis thaliana GN=ATL44 PE=2 SV=1)

HSP 1 Score: 167.9 bits (424), Expect = 1.1e-40
Identity = 89/148 (60.14%), Postives = 103/148 (69.59%), Query Frame = 1


Query: 21  APPP----EAVAIESDFVVILAALLCALICMVGLIAVARCAWLRRGSNGGGAGNQASANR 80
           APPP    E +A ESD VVIL+ALLCALIC+ GL AV RCAWLRR + GG   +  S N+
Sbjct: 12  APPPQPSEEMIAAESDMVVILSALLCALICVAGLAAVVRCAWLRRFTAGG---DSPSPNK 71

Query: 81  GLKKKILQSLPKFAYRA----SGSGGEGKFAAECAICLAEFLDGEEIRQLPQCGHCFHVS 140
           GLKKK LQSLP+  + A    SG+  E   + ECAICL +F DGEEIR LP CGH FHV 
Sbjct: 72  GLKKKALQSLPRSTFTAAESTSGAAAEEGDSTECAICLTDFADGEEIRVLPLCGHSFHVE 131

Query: 141 CVDTWLSSHSSCPSCRQILVVARCQKCG 161
           C+D WL S SSCPSCR+IL   RC +CG
Sbjct: 132 CIDKWLVSRSSCPSCRRILTPVRCDRCG 156

[Close]

BLAST of CmaCh06G001690.1 vs. Swiss-Prot
Match: ATL8_ARATH (RING-H2 finger protein ATL8 OS=Arabidopsis thaliana GN=ATL8 PE=2 SV=2)

HSP 1 Score: 167.5 bits (423), Expect = 1.4e-40
Identity = 97/182 (53.30%), Postives = 117/182 (64.29%), Query Frame = 1


Query: 13  SSATATATAPPPEAVAIESDFVVILAALLCALICMVGLIAVARCAWLRRGSNGGGAGNQ- 72
           +++T+ A A PP      SD V+ILA LLCAL C++GLIAV+RCAWLRR ++   +    
Sbjct: 12  ANSTSPAEASPP----FNSDLVLILAVLLCALTCIIGLIAVSRCAWLRRIASRNRSDQTH 71

Query: 73  ----ASANRGLKKKILQSLPKFAYRASGSGGEGKFAAECAICLAEFLDGEEIRQLPQCGH 132
               A+AN+GLKKK+L+SLPK  Y       E     ECAICL EF  G+E+R LPQCGH
Sbjct: 72  PPPVAAANKGLKKKVLRSLPKLTYSPDSPPAEK--LVECAICLTEFAAGDELRVLPQCGH 131

Query: 133 CFHVSCVDTWLSSHSSCPSCRQILVVARCQKCGDFPAVVHGDDHNNEEEQ---KRREDNN 187
            FHVSC+DTWL SHSSCPSCRQILVV RC KCG  P    G   +  E     K+RED  
Sbjct: 132 GFHVSCIDTWLGSHSSCPSCRQILVVTRCHKCGGLP----GSSSSGPEPDTRIKQREDGP 183

[Close]

BLAST of CmaCh06G001690.1 vs. Swiss-Prot
Match: ATL74_ARATH (RING-H2 finger protein ATL74 OS=Arabidopsis thaliana GN=ATL74 PE=2 SV=1)

HSP 1 Score: 115.2 bits (287), Expect = 8.2e-25
Identity = 66/126 (52.38%), Postives = 82/126 (65.08%), Query Frame = 1


Query: 30  ESDFVVILAALLCALICMVGLIAVARCAWLRRG---SNGGGAGNQASANRGLKKKILQSL 89
           +++ V+ILAALLCALI  +GL ++ RCA +R G   S+   AG  A    GLKK+ L+  
Sbjct: 31  DANMVIILAALLCALILALGLNSILRCA-MRCGFGLSSSAAAGTVAD-RAGLKKRELKKF 90

Query: 90  PKFAYRASGSGGEGKFAAECAICLAEFLDGEEIRQLPQCGHCFHVSCVDTWLSSHSSCPS 149
           P   Y   GSG     A ECAICL EF DGE +R LP C H FH+SC+DTWL SHSSCP+
Sbjct: 91  PVAEY---GSGEVKIAATECAICLGEFADGERVRVLPPCNHSFHMSCIDTWLVSHSSCPN 150

Query: 150 CRQILV 153
           CR  L+
Sbjct: 151 CRHSLI 151

[Close]

BLAST of CmaCh06G001690.1 vs. TrEMBL
Match: A0A0A0L622_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_3G000150 PE=4 SV=1)

HSP 1 Score: 278.9 bits (712), Expect = 4.8e-72
Identity = 150/196 (76.53%), Postives = 163/196 (83.16%), Query Frame = 1


Query: 1   MTRYLQALAGNTSSATATATAPPPEAVAIESDFVVILAALLCALICMVGLIAVARCAWLR 60
           M+ Y++AL  NTSSA      PPPEAVA+ESDFVVILAALLCALICMVGLIAVARCAWLR
Sbjct: 1   MSPYIRALTANTSSA------PPPEAVALESDFVVILAALLCALICMVGLIAVARCAWLR 60

Query: 61  RGSNGGGAGNQASANRGLKKKILQSLPKFAYRASGSGGEGKFAAECAICLAEFLDGEEIR 120
           RG       NQASANRGLKKKILQSLPKF Y+++   G+GK AAECAICLAEFL+GEEIR
Sbjct: 61  RG-------NQASANRGLKKKILQSLPKFRYKSTV--GDGKIAAECAICLAEFLEGEEIR 120

Query: 121 QLPQCGHCFHVSCVDTWLSSHSSCPSCRQILVVARCQKCGDFPAVVHGDD-HNNEEEQ-K 180
           QLPQCGHCFHVSCVDTWL +HSSCPSCRQILVVARCQKCG FPA V G   HNNEEE+ +
Sbjct: 121 QLPQCGHCFHVSCVDTWLGTHSSCPSCRQILVVARCQKCGQFPADVQGGGAHNNEEEEVE 180

Query: 181 RREDNNGNNRGLGFLP 195
              +NN NNRGLGFLP
Sbjct: 181 DNINNNNNNRGLGFLP 181

[Close]

BLAST of CmaCh06G001690.1 vs. TrEMBL
Match: I1LIC9_SOYBN (Uncharacterized protein OS=Glycine max GN=GLYMA_11G087600 PE=4 SV=1)

HSP 1 Score: 229.9 bits (585), Expect = 2.6e-57
Identity = 122/186 (65.59%), Postives = 137/186 (73.66%), Query Frame = 1


Query: 1   MTRYLQALAGNTSSATATATAPPPEAVAIESDFVVILAALLCALICMVGLIAVARCAWLR 60
           MTR  + L    ++    A APPPEAVA+ESDFVVILAALLCALIC+VGL+AVARCAWLR
Sbjct: 1   MTRAFRILNSADNATAVAAAAPPPEAVALESDFVVILAALLCALICVVGLVAVARCAWLR 60

Query: 61  RGSNGGGAGNQASANRGLKKKILQSLPKFAYRASGSGGEGKFAAECAICLAEFLDGEEIR 120
           RGS  G +  QA AN+GLKKK+LQSLPKFAY    +  +    +ECAICLAEF  G+EIR
Sbjct: 61  RGSGAGNSPRQALANKGLKKKVLQSLPKFAY-VDSNPSKWLATSECAICLAEFAAGDEIR 120

Query: 121 QLPQCGHCFHVSCVDTWLSSHSSCPSCRQILVVARCQKCGDFPAVVHGDDHN--NEEEQK 180
            LPQCGH FHV C+DTWL SHSSCPSCRQ+L VARCQKCG FPA   G       E E K
Sbjct: 121 VLPQCGHGFHVPCIDTWLGSHSSCPSCRQVLAVARCQKCGRFPATGAGASRTPATEPELK 180

Query: 181 RREDNN 185
            REDNN
Sbjct: 181 SREDNN 185

[Close]

BLAST of CmaCh06G001690.1 vs. TrEMBL
Match: M5VR28_PRUPE (Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa011201mg PE=4 SV=1)

HSP 1 Score: 228.0 bits (580), Expect = 9.7e-57
Identity = 120/182 (65.93%), Postives = 142/182 (78.02%), Query Frame = 1


Query: 12  TSSATATAT---APPPEAVAIESDFVVILAALLCALICMVGLIAVARCAWLRRGSNGGGA 71
           +S+AT ++T   APPPEAV +ESDFVVILAALLCA+IC++GL+AVARCAWLRRGS  GGA
Sbjct: 10  SSAATNSSTFPAAPPPEAVVLESDFVVILAALLCAVICVIGLLAVARCAWLRRGSGAGGA 69

Query: 72  G---NQASANRGLKKKILQSLPKFAYRASGSGGEGKFAAECAICLAEFLDGEEIRQLPQC 131
                QASAN+G+KKK+LQSLPKF Y   G+    K A+ECAICL EF +G+EIR LPQC
Sbjct: 70  SLSSAQASANKGVKKKVLQSLPKFTYGIGGAEPPPKLASECAICLGEFAEGDEIRVLPQC 129

Query: 132 GHCFHVSCVDTWLSSHSSCPSCRQILVVARCQKCGDFPAVVHGDDHNNEEEQKRREDNNG 188
           GH FHV CVD WL SHSSCPSCRQILVVARCQKCG FPA +      +E E K R+D++ 
Sbjct: 130 GHVFHVGCVDMWLGSHSSCPSCRQILVVARCQKCGQFPAPI------SEAELKARQDHSS 185

[Close]

BLAST of CmaCh06G001690.1 vs. TrEMBL
Match: A0A151SKI5_CAJCA (RING-H2 finger protein ATL1R OS=Cajanus cajan GN=KK1_001492 PE=4 SV=1)

HSP 1 Score: 225.3 bits (573), Expect = 6.3e-56
Identity = 118/185 (63.78%), Postives = 140/185 (75.68%), Query Frame = 1


Query: 1   MTRYLQALAGNTSSATATATAPPPEAVAIESDFVVILAALLCALICMVGLIAVARCAWLR 60
           MTR L+ L    ++    A APPPEAVA+ESDFVVILAALLCALIC+VGL+AVARCAWLR
Sbjct: 1   MTRTLRILKSAENATAVAAAAPPPEAVALESDFVVILAALLCALICVVGLVAVARCAWLR 60

Query: 61  RGSNGGGAGNQASA-NRGLKKKILQSLPKFAYRASGSGGEGKFAAECAICLAEFLDGEEI 120
           RGS GGG+  QA+A N+G+KKK++QSLPKF Y    +  +    +ECAICLAEF  G+EI
Sbjct: 61  RGSGGGGSAMQAAAANKGVKKKVVQSLPKFNY-VDSNPSKWVATSECAICLAEFGAGDEI 120

Query: 121 RQLPQCGHCFHVSCVDTWLSSHSSCPSCRQILVVARCQKCGDFPAVVHGDDHNNEEEQKR 180
           R +PQCGH FHV+C+DTWL SHSSCPSCRQ+L+ ARCQKCG FPA         E E K 
Sbjct: 121 RVMPQCGHGFHVTCIDTWLGSHSSCPSCRQVLMAARCQKCGRFPAAGSSRTPATEPELKS 180

Query: 181 REDNN 185
           RED+N
Sbjct: 181 REDDN 184

[Close]

BLAST of CmaCh06G001690.1 vs. TrEMBL
Match: I1J8B1_SOYBN (Uncharacterized protein OS=Glycine max GN=GLYMA_01G157400 PE=4 SV=1)

HSP 1 Score: 224.6 bits (571), Expect = 1.1e-55
Identity = 119/186 (63.98%), Postives = 136/186 (73.12%), Query Frame = 1


Query: 1   MTRYLQALAGNTSSATATATAPPPEAVAIESDFVVILAALLCALICMVGLIAVARCAWLR 60
           MTR  + L    ++ +  A A PPEAVA+ESDFVVILAALLCALIC+VGL+AVARCAW R
Sbjct: 1   MTRAFRILGSADNATSLAAVAAPPEAVALESDFVVILAALLCALICVVGLVAVARCAWFR 60

Query: 61  RGSNGGGAGNQASANRGLKKKILQSLPKFAYRASGSGGEGKFAAECAICLAEFLDGEEIR 120
           +GS GG +  QA AN+GLKKK+LQSLPKFAY    +  +    +ECAICLA+F  G+EIR
Sbjct: 61  QGSGGGSSPRQALANKGLKKKVLQSLPKFAY-VDSNPSKWVATSECAICLADFAAGDEIR 120

Query: 121 QLPQCGHCFHVSCVDTWLSSHSSCPSCRQILVVARCQKCGDFPAVVHGDDHN--NEEEQK 180
            LPQCGH FHV C+DTWL SHSSCPSCRQIL V RCQKCG FPA   G       E E K
Sbjct: 121 VLPQCGHGFHVPCIDTWLGSHSSCPSCRQILAVTRCQKCGRFPATGAGASRTPATEPELK 180

Query: 181 RREDNN 185
            REDNN
Sbjct: 181 SREDNN 185

[Close]

BLAST of CmaCh06G001690.1 vs. TAIR10
Match: AT1G20823.1 (AT1G20823.1 RING/U-box superfamily protein)

HSP 1 Score: 177.9 bits (450), Expect = 5.8e-45
Identity = 94/146 (64.38%), Postives = 110/146 (75.34%), Query Frame = 1


Query: 28  AIESDFVVILAALLCALICMVGLIAVARCAWLRRGSNGGG--AGNQ--------ASANRG 87
           A+ SD VVILAALLCALIC++GLIAV+RC WLRR + G    +G+Q        A+AN+G
Sbjct: 25  ALNSDLVVILAALLCALICVLGLIAVSRCVWLRRLAAGNRTVSGSQTQSPQPPVAAANKG 84

Query: 88  LKKKILQSLPKFAYRASGSGGEGKFAAECAICLAEFLDGEEIRQLPQCGHCFHVSCVDTW 147
           LKKK+LQSLPK  +  S    E +  AECAICLAEF  G+E+R LPQCGH FHV+C+DTW
Sbjct: 85  LKKKVLQSLPKLTF--SPESPESEKFAECAICLAEFSAGDELRVLPQCGHGFHVACIDTW 144

Query: 148 LSSHSSCPSCRQILVVARCQKCGDFP 164
           L SHSSCPSCRQILVVARC KCG  P
Sbjct: 145 LGSHSSCPSCRQILVVARCHKCGGLP 168

[Close]

BLAST of CmaCh06G001690.1 vs. TAIR10
Match: AT4G35480.1 (AT4G35480.1 RING-H2 finger A3B)

HSP 1 Score: 167.9 bits (424), Expect = 6.0e-42
Identity = 90/164 (54.88%), Postives = 109/164 (66.46%), Query Frame = 1


Query: 12  TSSATATATAPPPEAV-AIESDFVVILAALLCALICMVGLIAVARCAWLRR--GSNGGGA 71
           +S    TA+ PPPE + A E+D VVIL+ALLCAL+C+ GL AVARCAWLRR  G N    
Sbjct: 4   SSRFLGTASPPPPEEILAAETDMVVILSALLCALVCVAGLAAVARCAWLRRLTGVNPAAV 63

Query: 72  GNQASANRGLKKKILQSLPKFAYRASGSG------------GEGKFAAECAICLAEFLDG 131
           G     N+GLKKK LQ+LPK  Y AS S             G+G  + ECAIC+ EF +G
Sbjct: 64  GEAPPPNKGLKKKALQALPKSTYTASASTAAAADDLPCSSVGDGDSSTECAICITEFSEG 123

Query: 132 EEIRQLPQCGHCFHVSCVDTWLSSHSSCPSCRQILVVARCQKCG 161
           EEIR LP C H FHV+C+D WL+S SSCPSCR+ILV  +C +CG
Sbjct: 124 EEIRILPLCSHAFHVACIDKWLTSRSSCPSCRRILVPVKCDRCG 167

[Close]

BLAST of CmaCh06G001690.1 vs. TAIR10
Match: AT2G17450.1 (AT2G17450.1 RING-H2 finger A3A)

HSP 1 Score: 167.9 bits (424), Expect = 6.0e-42
Identity = 89/148 (60.14%), Postives = 103/148 (69.59%), Query Frame = 1


Query: 21  APPP----EAVAIESDFVVILAALLCALICMVGLIAVARCAWLRRGSNGGGAGNQASANR 80
           APPP    E +A ESD VVIL+ALLCALIC+ GL AV RCAWLRR + GG   +  S N+
Sbjct: 12  APPPQPSEEMIAAESDMVVILSALLCALICVAGLAAVVRCAWLRRFTAGG---DSPSPNK 71

Query: 81  GLKKKILQSLPKFAYRA----SGSGGEGKFAAECAICLAEFLDGEEIRQLPQCGHCFHVS 140
           GLKKK LQSLP+  + A    SG+  E   + ECAICL +F DGEEIR LP CGH FHV 
Sbjct: 72  GLKKKALQSLPRSTFTAAESTSGAAAEEGDSTECAICLTDFADGEEIRVLPLCGHSFHVE 131

Query: 141 CVDTWLSSHSSCPSCRQILVVARCQKCG 161
           C+D WL S SSCPSCR+IL   RC +CG
Sbjct: 132 CIDKWLVSRSSCPSCRRILTPVRCDRCG 156

[Close]

BLAST of CmaCh06G001690.1 vs. TAIR10
Match: AT1G76410.1 (AT1G76410.1 RING/U-box superfamily protein)

HSP 1 Score: 167.5 bits (423), Expect = 7.9e-42
Identity = 97/182 (53.30%), Postives = 117/182 (64.29%), Query Frame = 1


Query: 13  SSATATATAPPPEAVAIESDFVVILAALLCALICMVGLIAVARCAWLRRGSNGGGAGNQ- 72
           +++T+ A A PP      SD V+ILA LLCAL C++GLIAV+RCAWLRR ++   +    
Sbjct: 12  ANSTSPAEASPP----FNSDLVLILAVLLCALTCIIGLIAVSRCAWLRRIASRNRSDQTH 71

Query: 73  ----ASANRGLKKKILQSLPKFAYRASGSGGEGKFAAECAICLAEFLDGEEIRQLPQCGH 132
               A+AN+GLKKK+L+SLPK  Y       E     ECAICL EF  G+E+R LPQCGH
Sbjct: 72  PPPVAAANKGLKKKVLRSLPKLTYSPDSPPAEK--LVECAICLTEFAAGDELRVLPQCGH 131

Query: 133 CFHVSCVDTWLSSHSSCPSCRQILVVARCQKCGDFPAVVHGDDHNNEEEQ---KRREDNN 187
            FHVSC+DTWL SHSSCPSCRQILVV RC KCG  P    G   +  E     K+RED  
Sbjct: 132 GFHVSCIDTWLGSHSSCPSCRQILVVTRCHKCGGLP----GSSSSGPEPDTRIKQREDGP 183

[Close]

BLAST of CmaCh06G001690.1 vs. TAIR10
Match: AT5G01880.1 (AT5G01880.1 RING/U-box superfamily protein)

HSP 1 Score: 115.2 bits (287), Expect = 4.6e-26
Identity = 66/126 (52.38%), Postives = 82/126 (65.08%), Query Frame = 1


Query: 30  ESDFVVILAALLCALICMVGLIAVARCAWLRRG---SNGGGAGNQASANRGLKKKILQSL 89
           +++ V+ILAALLCALI  +GL ++ RCA +R G   S+   AG  A    GLKK+ L+  
Sbjct: 31  DANMVIILAALLCALILALGLNSILRCA-MRCGFGLSSSAAAGTVAD-RAGLKKRELKKF 90

Query: 90  PKFAYRASGSGGEGKFAAECAICLAEFLDGEEIRQLPQCGHCFHVSCVDTWLSSHSSCPS 149
           P   Y   GSG     A ECAICL EF DGE +R LP C H FH+SC+DTWL SHSSCP+
Sbjct: 91  PVAEY---GSGEVKIAATECAICLGEFADGERVRVLPPCNHSFHMSCIDTWLVSHSSCPN 150

Query: 150 CRQILV 153
           CR  L+
Sbjct: 151 CRHSLI 151

[Close]

BLAST of CmaCh06G001690.1 vs. NCBI nr
Match: gi|659096550|ref|XP_008449155.1| (PREDICTED: RING-H2 finger protein ATL80 [Cucumis melo])

HSP 1 Score: 280.8 bits (717), Expect = 1.8e-72
Identity = 149/194 (76.80%), Postives = 163/194 (84.02%), Query Frame = 1


Query: 1   MTRYLQALAGNTSSATATATAPPPEAVAIESDFVVILAALLCALICMVGLIAVARCAWLR 60
           M+ Y++AL  NTSSA      PPPEAVA+ESDFVVILAALLCALICMVGLIAVARCAWLR
Sbjct: 1   MSPYIRALTANTSSA------PPPEAVALESDFVVILAALLCALICMVGLIAVARCAWLR 60

Query: 61  RGSNGGGAGNQASANRGLKKKILQSLPKFAYRASGSGGEGKFAAECAICLAEFLDGEEIR 120
           RG       NQASANRGLKKKILQSLPKF Y+++   G+GK AAECAICLAEFL+GEEIR
Sbjct: 61  RG-------NQASANRGLKKKILQSLPKFRYKSTV--GDGKIAAECAICLAEFLEGEEIR 120

Query: 121 QLPQCGHCFHVSCVDTWLSSHSSCPSCRQILVVARCQKCGDFPAVVHGDDHNNEEEQKRR 180
           QLPQCGHCFHVSCVDTWL +HSSCPSCRQILVVARCQKCG FPAVV G   +N EE++  
Sbjct: 121 QLPQCGHCFHVSCVDTWLGTHSSCPSCRQILVVARCQKCGQFPAVVQGGAADNNEEEE-V 178

Query: 181 EDNNGNNRGLGFLP 195
           EDNN +NRGLGFLP
Sbjct: 181 EDNNNDNRGLGFLP 178

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BLAST of CmaCh06G001690.1 vs. NCBI nr
Match: gi|449456961|ref|XP_004146217.1| (PREDICTED: RING-H2 finger protein ATL80 [Cucumis sativus])

HSP 1 Score: 278.9 bits (712), Expect = 6.9e-72
Identity = 150/196 (76.53%), Postives = 163/196 (83.16%), Query Frame = 1


Query: 1   MTRYLQALAGNTSSATATATAPPPEAVAIESDFVVILAALLCALICMVGLIAVARCAWLR 60
           M+ Y++AL  NTSSA      PPPEAVA+ESDFVVILAALLCALICMVGLIAVARCAWLR
Sbjct: 1   MSPYIRALTANTSSA------PPPEAVALESDFVVILAALLCALICMVGLIAVARCAWLR 60

Query: 61  RGSNGGGAGNQASANRGLKKKILQSLPKFAYRASGSGGEGKFAAECAICLAEFLDGEEIR 120
           RG       NQASANRGLKKKILQSLPKF Y+++   G+GK AAECAICLAEFL+GEEIR
Sbjct: 61  RG-------NQASANRGLKKKILQSLPKFRYKSTV--GDGKIAAECAICLAEFLEGEEIR 120

Query: 121 QLPQCGHCFHVSCVDTWLSSHSSCPSCRQILVVARCQKCGDFPAVVHGDD-HNNEEEQ-K 180
           QLPQCGHCFHVSCVDTWL +HSSCPSCRQILVVARCQKCG FPA V G   HNNEEE+ +
Sbjct: 121 QLPQCGHCFHVSCVDTWLGTHSSCPSCRQILVVARCQKCGQFPADVQGGGAHNNEEEEVE 180

Query: 181 RREDNNGNNRGLGFLP 195
              +NN NNRGLGFLP
Sbjct: 181 DNINNNNNNRGLGFLP 181

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BLAST of CmaCh06G001690.1 vs. NCBI nr
Match: gi|1009143999|ref|XP_015889562.1| (PREDICTED: RING-H2 finger protein ATL8 [Ziziphus jujuba])

HSP 1 Score: 241.1 bits (614), Expect = 1.6e-60
Identity = 137/210 (65.24%), Postives = 154/210 (73.33%), Query Frame = 1


Query: 1   MTRYLQAL--AGNTSSATATATAPPPEAVAIESDFVVILAALLCALICMVGLIAVARCAW 60
           MTR L+ L  A NTSS      APPPEAV +ESDFVVILAALLCALIC+VGLIAVARCAW
Sbjct: 1   MTRTLRFLSAATNTSSTAMVVEAPPPEAVTLESDFVVILAALLCALICVVGLIAVARCAW 60

Query: 61  LRRGSNGGGAG----NQASANRGLKKKILQSLPKFAYRASGS---GGE-GKFAAECAICL 120
           LRRGS  GG G    +QA+AN+GLKKK+LQSLPKF Y A+ +   GGE  K A ECAICL
Sbjct: 61  LRRGSAAGGRGTRSPSQAAANKGLKKKVLQSLPKFTYGAATADVCGGEPAKIATECAICL 120

Query: 121 AEFLDGEEIRQLPQCGHCFHVSCVDTWLSSHSSCPSCRQILVVARCQKCGDFPAVVHGD- 180
            EF +GEEIR LPQCGH FHV C+DTWL SHSSCPSCRQILVV RCQKCG FPAV  G  
Sbjct: 121 GEFAEGEEIRVLPQCGHSFHVGCIDTWLGSHSSCPSCRQILVVGRCQKCGQFPAVSGGSA 180

Query: 181 DHNNEEEQKRREDNN-----GNNRGLGFLP 195
              +E + K R+D +      N+  +GFLP
Sbjct: 181 AARSEAQMKARQDISYSATVSNHTSIGFLP 210

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BLAST of CmaCh06G001690.1 vs. NCBI nr
Match: gi|1021515728|ref|XP_016201329.1| (PREDICTED: RING-H2 finger protein ATL8-like [Arachis ipaensis])

HSP 1 Score: 237.7 bits (605), Expect = 1.8e-59
Identity = 127/195 (65.13%), Postives = 143/195 (73.33%), Query Frame = 1


Query: 1   MTRYLQALAGNTSSATATATAPPPEAVAIESDFVVILAALLCALICMVGLIAVARCAWLR 60
           MTR L++L     +AT  A APPPEAVA+ESDFVVILAALLCALIC+VGL+AVARCAWLR
Sbjct: 1   MTRTLRSLTSTADNATVVAAAPPPEAVALESDFVVILAALLCALICVVGLVAVARCAWLR 60

Query: 61  RGSNGGGAGNQASANRGLKKKILQSLPKFAY-------RASGSGGEGKFAAECAICLAEF 120
           RGS  G +  QA AN+GLKKK+LQSLPKFAY          GSG      AECAICL++F
Sbjct: 61  RGSAAGASPRQALANKGLKKKVLQSLPKFAYVDGGDPESGFGSGAGWMVTAECAICLSDF 120

Query: 121 LDGEEIRQLPQCGHCFHVSCVDTWLSSHSSCPSCRQILVVARCQKCGDFPAVVHGDDHN- 180
             G+EIR LPQCGH FHV+C+DTWL SHSSCPSCRQ+L VARCQKCG FPA   G     
Sbjct: 121 AAGDEIRVLPQCGHGFHVACIDTWLGSHSSCPSCRQVLAVARCQKCGRFPATGAGSSAAR 180

Query: 181 ---NEEEQKRREDNN 185
              NE E K RED+N
Sbjct: 181 AAINEPELKSREDDN 195

[Close]

BLAST of CmaCh06G001690.1 vs. NCBI nr
Match: gi|1012125395|ref|XP_015963503.1| (PREDICTED: RING-H2 finger protein ATL8-like [Arachis duranensis])

HSP 1 Score: 237.7 bits (605), Expect = 1.8e-59
Identity = 127/195 (65.13%), Postives = 143/195 (73.33%), Query Frame = 1


Query: 1   MTRYLQALAGNTSSATATATAPPPEAVAIESDFVVILAALLCALICMVGLIAVARCAWLR 60
           MTR L++L     +AT  A APPPEAVA+ESDFVVILAALLCALIC+VGL+AVARCAWLR
Sbjct: 1   MTRALRSLTSTADNATVVAAAPPPEAVALESDFVVILAALLCALICVVGLVAVARCAWLR 60

Query: 61  RGSNGGGAGNQASANRGLKKKILQSLPKFAY-------RASGSGGEGKFAAECAICLAEF 120
           RGS  G +  QA AN+GLKKK+LQSLPKFAY          GSG      AECAICL++F
Sbjct: 61  RGSAAGASPRQALANKGLKKKVLQSLPKFAYVDGGDPESGFGSGAGWMVTAECAICLSDF 120

Query: 121 LDGEEIRQLPQCGHCFHVSCVDTWLSSHSSCPSCRQILVVARCQKCGDFPAVVHGDD--- 180
             G+EIR LPQCGH FHV+C+DTWL SHSSCPSCRQ+L VARCQKCG FPA   G     
Sbjct: 121 AAGDEIRVLPQCGHGFHVACIDTWLGSHSSCPSCRQVLAVARCQKCGRFPATGAGSSAAR 180

Query: 181 -HNNEEEQKRREDNN 185
              NE E K RED+N
Sbjct: 181 ASINEPELKSREDDN 195

The following BLAST results are available for this feature:

BLAST of CmaCh06G001690.1 vs. Swiss-Prot


Match Name	E-value	Identity	Description
ATL80_ARATH	1.0e-43	64.38	RING-H2 finger protein ATL80 OS=Arabidopsis thaliana GN=ATL80 PE=2 SV=1	[more]
ATL45_ARATH	1.1e-40	54.88	Probable E3 ubiquitin-protein ligase ATL45 OS=Arabidopsis thaliana GN=ATL45 PE=2...	[more]
ATL44_ARATH	1.1e-40	60.14	Probable E3 ubiquitin-protein ligase ATL44 OS=Arabidopsis thaliana GN=ATL44 PE=2...	[more]
ATL8_ARATH	1.4e-40	53.30	RING-H2 finger protein ATL8 OS=Arabidopsis thaliana GN=ATL8 PE=2 SV=2	[more]
ATL74_ARATH	8.2e-25	52.38	RING-H2 finger protein ATL74 OS=Arabidopsis thaliana GN=ATL74 PE=2 SV=1	[more]

BLAST of CmaCh06G001690.1 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0L622_CUCSA	4.8e-72	76.53	Uncharacterized protein OS=Cucumis sativus GN=Csa_3G000150 PE=4 SV=1	[more]
I1LIC9_SOYBN	2.6e-57	65.59	Uncharacterized protein OS=Glycine max GN=GLYMA_11G087600 PE=4 SV=1	[more]
M5VR28_PRUPE	9.7e-57	65.93	Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa011201mg PE=4 SV=1	[more]
A0A151SKI5_CAJCA	6.3e-56	63.78	RING-H2 finger protein ATL1R OS=Cajanus cajan GN=KK1_001492 PE=4 SV=1	[more]
I1J8B1_SOYBN	1.1e-55	63.98	Uncharacterized protein OS=Glycine max GN=GLYMA_01G157400 PE=4 SV=1	[more]

BLAST of CmaCh06G001690.1 vs. TAIR10


Match Name	E-value	Identity	Description
AT1G20823.1	5.8e-45	64.38	RING/U-box superfamily protein	[more]
AT4G35480.1	6.0e-42	54.88	RING-H2 finger A3B	[more]
AT2G17450.1	6.0e-42	60.14	RING-H2 finger A3A	[more]
AT1G76410.1	7.9e-42	53.30	RING/U-box superfamily protein	[more]
AT5G01880.1	4.6e-26	52.38	RING/U-box superfamily protein	[more]

BLAST of CmaCh06G001690.1 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|659096550\|ref\|XP_008449155.1\|	1.8e-72	76.80	PREDICTED: RING-H2 finger protein ATL80 [Cucumis melo]	[more]
gi\|449456961\|ref\|XP_004146217.1\|	6.9e-72	76.53	PREDICTED: RING-H2 finger protein ATL80 [Cucumis sativus]	[more]
gi\|1009143999\|ref\|XP_015889562.1\|	1.6e-60	65.24	PREDICTED: RING-H2 finger protein ATL8 [Ziziphus jujuba]	[more]
gi\|1021515728\|ref\|XP_016201329.1\|	1.8e-59	65.13	PREDICTED: RING-H2 finger protein ATL8-like [Arachis ipaensis]	[more]
gi\|1012125395\|ref\|XP_015963503.1\|	1.8e-59	65.13	PREDICTED: RING-H2 finger protein ATL8-like [Arachis duranensis]	[more]

Annotated Terms

The following terms have been associated with this mRNA:

Vocabulary: **INTERPRO**
Term	Definition
IPR001841	Znf_RING
IPR013083	Znf_RING/FYVE/PHD

Vocabulary: **Molecular Function**
Term	Definition
GO:0005515	protein binding
GO:0008270	zinc ion binding

GO Annotation

GO Assignments

This mRNA is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0005515	protein binding
molecular_function	GO:0008270	zinc ion binding

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
CmaCh06G001690	CmaCh06G001690	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
CmaCh06G001690.1	CmaCh06G001690.1-protein	polypeptide

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
CmaCh06G001690.1.exon.1	CmaCh06G001690.1.exon.1	exon

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
CmaCh06G001690.1.CDS.1	CmaCh06G001690.1.CDS.1	CDS

InterPro

Analysis Name: InterPro Annotations of Cucurbita maxima
Date Performed: 2017-05-20


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR001841	Zinc finger, RING-type	PFAM	PF13639	zf-RING_2	coord: 105..148 score: 1.5
IPR001841	Zinc finger, RING-type	SMART	SM00184	ring_2	coord: 106..147 score: 1.
IPR001841	Zinc finger, RING-type	PROFILE	PS50089	ZF_RING_2	coord: 106..148 score: 12
IPR013083	Zinc finger, RING/FYVE/PHD-type	GENE3D	G3DSA:3.30.40.10		coord: 104..150 score: 3.5
None	No IPR available	PANTHER	PTHR14155	RING FINGER DOMAIN-CONTAINING	coord: 21..170 score: 6.2
None	No IPR available	PANTHER	PTHR14155:SF187	SUBFAMILY NOT NAMED	coord: 21..170 score: 6.2
None	No IPR available	SMART	SM01197	FANCL_C_2	coord: 102..156 score: 7.
None	No IPR available	unknown	SSF57850	RING/U-box	coord: 105..154 score: 3.53