CmaCh05G007540.1 (mRNA) Cucurbita maxima (Rimu) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CmaCh05G007540.1
Type	mRNA
Organism	Cucurbita maxima (Cucurbita maxima (Rimu))
Description	Ubiquitin carboxyl-terminal hydrolase 15
Location	Cma_Chr05 : 4383415 .. 4384482 (-)
Sequence length	933

Genome Viewer

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

AATTAAAAGAATCTCATTAAGAACAAAGAAAAATGTGCATATGTGAGCGTGGCTTCGTCCAATTCTTCAACAACTTCATATATTTCCCCCCTTCTTCTTCACCCTTTTCCCACCTTCAAATGAAATTCAACCCCTCAAATCCAAGCATTTCAAAGTTGTACTTGAACTTCATGAACAAATGAAAAACTCCCCATGAAACAAAATCCCCCTCCCCTTTTTCTCACGATGTCGCCTTATGGGGTTCTATTTTCTCTCATTTTCCTGCTCTTTCTCGCCCACGACGCCTTTGAAGCGACCTCAATCCACGTGAGTACTCAAAATCCGCTTCTCCAAAGAACCCACATCTCAAAAAATCGAAACCCCATTTGGTTCCCATTTCCCTCAAATCGATTGGTTCAATCCATTTTCCTGCTCTGATTCTGGGTGCTTCTTGTTTCTTAGGTTAATGACTCCGACCAAGAACCGATGATGGTTCCATTGATGGAGAAGATGGAAACGACGGCGATGGTGATAAACGGCGGCCGACGGCAGCTTAGGAGCTTCCAGATTTGTGCTCTCTGCACCTGCTGCGGCGGTGCCAGAGGAATGTGCGTTCCATCACCCTGTTGCTATGCTATAAACTGTAACATCCCTAATAGGCCATTTGGGTTTTGCTCTTTTACTCCAAGGACCTGTAACTGCTTTGGCTGCCATATTTAATAAGCTTTCTTGTTATGATATTGACAATGGTTCATTGTTGGATCTCTGAAACTGTGGAATACAAGTTCTAAATTGTTCATTGTTCATGGAATTGTGTCTTGATTTGGTGTCTGTAGGAGATATCATAGCATGGTGCCATAGTTGAGCTTTTGAGGACAGAATGTACCAAGATTTGGCTTGTTGGGCACTGTTGATAGCTCTATTATGATGATCTTTGTGCCTTTTTTTTATTGCTTTTGCTTTGTTTGTTTGTTTGTTTGTTTCTGAGGTGGGTTTTGTAAGAGACTGCAAATCATGGCGTTTTCTGCTTCTGAAACTGTTCTGATTCATTCCATTATACGTTTTCGTTTTTGAAATGGCACTTTCTCC

mRNA sequence

AATTAAAAGAATCTCATTAAGAACAAAGAAAAATGTGCATATGTGAGCGTGGCTTCGTCCAATTCTTCAACAACTTCATATATTTCCCCCCTTCTTCTTCACCCTTTTCCCACCTTCAAATGAAATTCAACCCCTCAAATCCAAGCATTTCAAAGTTGTACTTGAACTTCATGAACAAATGAAAAACTCCCCATGAAACAAAATCCCCCTCCCCTTTTTCTCACGATGTCGCCTTATGGGGTTCTATTTTCTCTCATTTTCCTGCTCTTTCTCGCCCACGACGCCTTTGAAGCGACCTCAATCCACGTTAATGACTCCGACCAAGAACCGATGATGGTTCCATTGATGGAGAAGATGGAAACGACGGCGATGGTGATAAACGGCGGCCGACGGCAGCTTAGGAGCTTCCAGATTTGTGCTCTCTGCACCTGCTGCGGCGGTGCCAGAGGAATGTGCGTTCCATCACCCTGTTGCTATGCTATAAACTGTAACATCCCTAATAGGCCATTTGGGTTTTGCTCTTTTACTCCAAGGACCTGTAACTGCTTTGGCTGCCATATTTAATAAGCTTTCTTGTTATGATATTGACAATGGTTCATTGTTGGATCTCTGAAACTGTGGAATACAAGTTCTAAATTGTTCATTGTTCATGGAATTGTGTCTTGATTTGGTGTCTGTAGGAGATATCATAGCATGGTGCCATAGTTGAGCTTTTGAGGACAGAATGTACCAAGATTTGGCTTGTTGGGCACTGTTGATAGCTCTATTATGATGATCTTTGTGCCTTTTTTTTATTGCTTTTGCTTTGTTTGTTTGTTTGTTTGTTTCTGAGGTGGGTTTTGTAAGAGACTGCAAATCATGGCGTTTTCTGCTTCTGAAACTGTTCTGATTCATTCCATTATACGTTTTCGTTTTTGAAATGGCACTTTCTCC

Coding sequence (CDS)

ATGAAACAAAATCCCCCTCCCCTTTTTCTCACGATGTCGCCTTATGGGGTTCTATTTTCTCTCATTTTCCTGCTCTTTCTCGCCCACGACGCCTTTGAAGCGACCTCAATCCACGTTAATGACTCCGACCAAGAACCGATGATGGTTCCATTGATGGAGAAGATGGAAACGACGGCGATGGTGATAAACGGCGGCCGACGGCAGCTTAGGAGCTTCCAGATTTGTGCTCTCTGCACCTGCTGCGGCGGTGCCAGAGGAATGTGCGTTCCATCACCCTGTTGCTATGCTATAAACTGTAACATCCCTAATAGGCCATTTGGGTTTTGCTCTTTTACTCCAAGGACCTGTAACTGCTTTGGCTGCCATATTTAA

Protein sequence

MKQNPPPLFLTMSPYGVLFSLIFLLFLAHDAFEATSIHVNDSDQEPMMVPLMEKMETTAMVINGGRRQLRSFQICALCTCCGGARGMCVPSPCCYAINCNIPNRPFGFCSFTPRTCNCFGCHI

Homology

[Close]

BLAST of CmaCh05G007540.1 vs. TrEMBL
Match: A0A0A0LJJ1_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_2G074210 PE=4 SV=1)

HSP 1 Score: 206.1 bits (523), Expect = 2.5e-50
Identity = 95/113 (84.07%), Postives = 103/113 (91.15%), Query Frame = 1


Query: 12  MSPYGVLFSLIFLLFLAHDAFEATSIHVNDSDQEPMMVPLMEKMETTAMVIN-GGRRQLR 71
           MS YGVLFS I LLFLA +A E TSIHVN+SDQEP+MVPLME   TTAM++N GGRRQL+
Sbjct: 1   MSSYGVLFSFILLLFLAQNAIEGTSIHVNESDQEPIMVPLMETTTTTAMMMNSGGRRQLK 60

Query: 72  SFQICALCTCCGGARGMCVPSPCCYAINCNIPNRPFGFCSFTPRTCNCFGCHI 124
           SFQICALCTCCGGARGMC+PSPCCYAINCNIPNRPFGFCSFTP+TCNCFGCHI
Sbjct: 61  SFQICALCTCCGGARGMCLPSPCCYAINCNIPNRPFGFCSFTPKTCNCFGCHI 113

[Close]

BLAST of CmaCh05G007540.1 vs. TrEMBL
Match: W9S703_9ROSA (Uncharacterized protein OS=Morus notabilis GN=L484_015121 PE=4 SV=1)

HSP 1 Score: 158.3 bits (399), Expect = 6.0e-36
Identity = 80/121 (66.12%), Postives = 94/121 (77.69%), Query Frame = 1


Query: 12  MSPYGVLFSLIFLLFLAH---DAFEATSIHVNDSD----QEPMMVPLME--KMETTAMVI 71
           M  YGV+FSLI LLFLA       EA+  H+N S     +EP +VPL+E  KME   M++
Sbjct: 2   MPAYGVIFSLILLLFLATVITTKTEASLAHINGSAAVAAEEPPLVPLVEEGKME---MMM 61

Query: 72  NGGRRQLRSFQICALCTCCGGARGMCVPSPCCYAINCNIPNRPFGFCSFTPRTCNCFGCH 124
           N  RR+L SFQICALCTCCGGARG+C+PSPCCYAINCNIP+RPFGFCSFTP+TCNCFGCH
Sbjct: 62  NESRRKLGSFQICALCTCCGGARGVCLPSPCCYAINCNIPHRPFGFCSFTPKTCNCFGCH 119

[Close]

BLAST of CmaCh05G007540.1 vs. TrEMBL
Match: M5W0E2_PRUPE (Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa012325mg PE=4 SV=1)

HSP 1 Score: 152.9 bits (385), Expect = 2.5e-34
Identity = 78/127 (61.42%), Postives = 90/127 (70.87%), Query Frame = 1


Query: 11  TMSP-YGVLFSLIFLLFLAH--DAFEATSIHVNDS-----------DQEPMMVPLMEKME 70
           TM P +GV FSLIFLLFLA      EA+  H N S           D+   +VPL+    
Sbjct: 48  TMMPAHGVTFSLIFLLFLATVLTTTEASLTHANGSSAVAAAATDKKDKVEPLVPLVGAEN 107

Query: 71  TTAMVINGGRRQLRSFQICALCTCCGGARGMCVPSPCCYAINCNIPNRPFGFCSFTPRTC 124
              +V+N  RR+L SFQICALCTCCGGA+G+C+PSPCCYAINCNIPNRPFGFCSFTP+TC
Sbjct: 108 FKTLVMNETRRRLGSFQICALCTCCGGAKGLCLPSPCCYAINCNIPNRPFGFCSFTPKTC 167

[Close]

BLAST of CmaCh05G007540.1 vs. TrEMBL
Match: A0A061EZN4_THECC (Uncharacterized protein OS=Theobroma cacao GN=TCM_025264 PE=4 SV=1)

HSP 1 Score: 152.5 bits (384), Expect = 3.3e-34
Identity = 74/114 (64.91%), Postives = 89/114 (78.07%), Query Frame = 1


Query: 13  SPYGVLFSLIFLLFLAH--DAFEATSI-HVNDSDQEPMMVPLMEKMETTAMVINGGRRQL 72
           S YGV   L+FLLF A+  +  EATS+  VN S +   MVPL+E+     M+ N  RR+L
Sbjct: 3   SAYGVTLFLLFLLFSAYVFNYNEATSMAQVNGSSE---MVPLVEEKMMKMMMFNESRRKL 62

Query: 73  RSFQICALCTCCGGARGMCVPSPCCYAINCNIPNRPFGFCSFTPRTCNCFGCHI 124
            SFQICA+CTCCGGA+G+C+PSPCCYAINCNIPNRPFGFCSFTP+TCNCFGCH+
Sbjct: 63  GSFQICAVCTCCGGAKGLCLPSPCCYAINCNIPNRPFGFCSFTPKTCNCFGCHL 113

[Close]

BLAST of CmaCh05G007540.1 vs. TrEMBL
Match: A0A059AZ76_EUCGR (Uncharacterized protein OS=Eucalyptus grandis GN=EUGRSUZ_H01385 PE=4 SV=1)

HSP 1 Score: 150.6 bits (379), Expect = 1.2e-33
Identity = 70/116 (60.34%), Postives = 86/116 (74.14%), Query Frame = 1


Query: 12  MSPYGVLFSLIFLLFLAHDAF----EATSIHVNDSDQEPMMVPLMEKMETTAMVINGGRR 71
           MS +G+L SL   L  A  +      A  +H N+S  E  M+PL+E+ +   + +N  RR
Sbjct: 1   MSTHGILVSLFLALSFASASAIPPNRAALLHANESAAEEEMMPLVEQGKFEMVELNETRR 60

Query: 72  QLRSFQICALCTCCGGARGMCVPSPCCYAINCNIPNRPFGFCSFTPRTCNCFGCHI 124
           +L SFQICALCTCCGGARG+C+PSPCCYAINCNIPNRPFGFCSFTP+TCNCFGCH+
Sbjct: 61  RLGSFQICALCTCCGGARGVCLPSPCCYAINCNIPNRPFGFCSFTPKTCNCFGCHL 116

[Close]

BLAST of CmaCh05G007540.1 vs. TAIR10
Match: AT1G65295.1 (AT1G65295.1 unknown protein)

HSP 1 Score: 145.2 bits (365), Expect = 2.7e-35
Identity = 68/109 (62.39%), Postives = 83/109 (76.15%), Query Frame = 1


Query: 20  SLIFLLFLAHDAFEATSIHVND-----SDQEPMMVPLMEKMETTAMVINGGRRQLRSFQI 79
           S++FLL L    F ++S   N+      D E MMVPL E+     MV+N  RR+L SFQI
Sbjct: 10  SIVFLLLLLFSIFISSSHQANEVLPAEGDNEMMMVPLGEEK---FMVMNETRRKLGSFQI 69

Query: 80  CALCTCCGGARGMCVPSPCCYAINCNIPNRPFGFCSFTPRTCNCFGCHI 124
           C++CTCCGGA+G+C+PSPCCYAINCNIPNRPFG+CSFTP+TCNCFGCHI
Sbjct: 70  CSVCTCCGGAKGLCLPSPCCYAINCNIPNRPFGYCSFTPKTCNCFGCHI 115

[Close]

BLAST of CmaCh05G007540.1 vs. TAIR10
Match: AT5G01015.1 (AT5G01015.1 unknown protein)

HSP 1 Score: 65.9 bits (159), Expect = 2.0e-11
Identity = 24/58 (41.38%), Postives = 35/58 (60.34%), Query Frame = 1


Query: 66  RRQLRSFQICALCTCCGGARGMCVPSPCCYAINCNIPNRPFGFCSFTPRTCNCFGCHI 124
           R+ +   ++C  C CC      C   PCC+ INC +PN+PFG C+F P++C+C  C I
Sbjct: 49  RKLMTPLELCLECKCCSSTT--CATMPCCFGINCQLPNKPFGVCAFVPKSCHCNSCSI 104

[Close]

BLAST of CmaCh05G007540.1 vs. NCBI nr
Match: gi|700206140|gb|KGN61259.1| (hypothetical protein Csa_2G074210 [Cucumis sativus])

HSP 1 Score: 206.1 bits (523), Expect = 3.6e-50
Identity = 95/113 (84.07%), Postives = 103/113 (91.15%), Query Frame = 1


Query: 12  MSPYGVLFSLIFLLFLAHDAFEATSIHVNDSDQEPMMVPLMEKMETTAMVIN-GGRRQLR 71
           MS YGVLFS I LLFLA +A E TSIHVN+SDQEP+MVPLME   TTAM++N GGRRQL+
Sbjct: 1   MSSYGVLFSFILLLFLAQNAIEGTSIHVNESDQEPIMVPLMETTTTTAMMMNSGGRRQLK 60

Query: 72  SFQICALCTCCGGARGMCVPSPCCYAINCNIPNRPFGFCSFTPRTCNCFGCHI 124
           SFQICALCTCCGGARGMC+PSPCCYAINCNIPNRPFGFCSFTP+TCNCFGCHI
Sbjct: 61  SFQICALCTCCGGARGMCLPSPCCYAINCNIPNRPFGFCSFTPKTCNCFGCHI 113

[Close]

BLAST of CmaCh05G007540.1 vs. NCBI nr
Match: gi|659082474|ref|XP_008441859.1| (PREDICTED: uncharacterized protein LOC103485890 [Cucumis melo])

HSP 1 Score: 199.1 bits (505), Expect = 4.4e-48
Identity = 91/112 (81.25%), Postives = 99/112 (88.39%), Query Frame = 1


Query: 12  MSPYGVLFSLIFLLFLAHDAFEATSIHVNDSDQEPMMVPLMEKMETTAMVINGGRRQLRS 71
           MS YGVLFS IFLL LA +A E TSI VN+SDQEP+MVPLME   T  M+ +GGRRQL+S
Sbjct: 1   MSSYGVLFSFIFLLILAQNAIEGTSILVNESDQEPIMVPLMETTTTAMMMNSGGRRQLKS 60

Query: 72  FQICALCTCCGGARGMCVPSPCCYAINCNIPNRPFGFCSFTPRTCNCFGCHI 124
           FQICALCTCCGGARGMC+PSPCCYAINCNIPNRPFGFCSFTP+TCNCFGCHI
Sbjct: 61  FQICALCTCCGGARGMCLPSPCCYAINCNIPNRPFGFCSFTPKTCNCFGCHI 112

[Close]

BLAST of CmaCh05G007540.1 vs. NCBI nr
Match: gi|470132581|ref|XP_004302158.1| (PREDICTED: uncharacterized protein LOC101312646 [Fragaria vesca subsp. vesca])

HSP 1 Score: 159.8 bits (403), Expect = 3.0e-36
Identity = 77/115 (66.96%), Postives = 91/115 (79.13%), Query Frame = 1


Query: 13  SPYGVLF-SLIFLLFLAHDAF--EATSIHVNDSDQ--EPMMVPLMEKMETTAMVINGGRR 72
           S YGV+F SLI LLFLA +    E +S H N S++  EP  VPL+E  +   +V+N  RR
Sbjct: 4   SSYGVIFLSLILLLFLATEVISTEPSSTHANGSEKVDEPPFVPLIEPEKLKTLVMNETRR 63

Query: 73  QLRSFQICALCTCCGGARGMCVPSPCCYAINCNIPNRPFGFCSFTPRTCNCFGCH 123
           +L SFQICALCTCCGGA+G+C+PSPCCYAINCNIPNRPFGFCSFTP+TCNCFGCH
Sbjct: 64  RLGSFQICALCTCCGGAKGLCLPSPCCYAINCNIPNRPFGFCSFTPKTCNCFGCH 118

[Close]

BLAST of CmaCh05G007540.1 vs. NCBI nr
Match: gi|703154914|ref|XP_010111066.1| (hypothetical protein L484_015121 [Morus notabilis])

HSP 1 Score: 158.3 bits (399), Expect = 8.6e-36
Identity = 80/121 (66.12%), Postives = 94/121 (77.69%), Query Frame = 1


Query: 12  MSPYGVLFSLIFLLFLAH---DAFEATSIHVNDSD----QEPMMVPLME--KMETTAMVI 71
           M  YGV+FSLI LLFLA       EA+  H+N S     +EP +VPL+E  KME   M++
Sbjct: 2   MPAYGVIFSLILLLFLATVITTKTEASLAHINGSAAVAAEEPPLVPLVEEGKME---MMM 61

Query: 72  NGGRRQLRSFQICALCTCCGGARGMCVPSPCCYAINCNIPNRPFGFCSFTPRTCNCFGCH 124
           N  RR+L SFQICALCTCCGGARG+C+PSPCCYAINCNIP+RPFGFCSFTP+TCNCFGCH
Sbjct: 62  NESRRKLGSFQICALCTCCGGARGVCLPSPCCYAINCNIPHRPFGFCSFTPKTCNCFGCH 119

[Close]

BLAST of CmaCh05G007540.1 vs. NCBI nr
Match: gi|645223037|ref|XP_008218438.1| (PREDICTED: uncharacterized protein LOC103318784 [Prunus mume])

HSP 1 Score: 155.2 bits (391), Expect = 7.3e-35
Identity = 77/125 (61.60%), Postives = 89/125 (71.20%), Query Frame = 1


Query: 12  MSPYGVLFSLIFLLFLAH--DAFEATSIHVNDS-----------DQEPMMVPLMEKMETT 71
           M  +GV FSLIFLLFLA      EA+  H N S           D+   +VPL+      
Sbjct: 2   MPAHGVTFSLIFLLFLATVLTTTEASLTHANGSAAVAAAATDKKDKVEPLVPLVGAENFK 61

Query: 72  AMVINGGRRQLRSFQICALCTCCGGARGMCVPSPCCYAINCNIPNRPFGFCSFTPRTCNC 124
            +V+N  RR+LRSFQICALCTCCGGA+G+C+PSPCCYAINCNIPNRPFGFCSFTP+TCNC
Sbjct: 62  TLVMNETRRRLRSFQICALCTCCGGAKGLCLPSPCCYAINCNIPNRPFGFCSFTPKTCNC 121

The following BLAST results are available for this feature:

BLAST of CmaCh05G007540.1 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of CmaCh05G007540.1 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0LJJ1_CUCSA	2.5e-50	84.07	Uncharacterized protein OS=Cucumis sativus GN=Csa_2G074210 PE=4 SV=1	[more]
W9S703_9ROSA	6.0e-36	66.12	Uncharacterized protein OS=Morus notabilis GN=L484_015121 PE=4 SV=1	[more]
M5W0E2_PRUPE	2.5e-34	61.42	Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa012325mg PE=4 SV=1	[more]
A0A061EZN4_THECC	3.3e-34	64.91	Uncharacterized protein OS=Theobroma cacao GN=TCM_025264 PE=4 SV=1	[more]
A0A059AZ76_EUCGR	1.2e-33	60.34	Uncharacterized protein OS=Eucalyptus grandis GN=EUGRSUZ_H01385 PE=4 SV=1	[more]

BLAST of CmaCh05G007540.1 vs. TAIR10


Match Name	E-value	Identity	Description
AT1G65295.1	2.7e-35	62.39	unknown protein	[more]
AT5G01015.1	2.0e-11	41.38	unknown protein	[more]

BLAST of CmaCh05G007540.1 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|700206140\|gb\|KGN61259.1\|	3.6e-50	84.07	hypothetical protein Csa_2G074210 [Cucumis sativus]	[more]
gi\|659082474\|ref\|XP_008441859.1\|	4.4e-48	81.25	PREDICTED: uncharacterized protein LOC103485890 [Cucumis melo]	[more]
gi\|470132581\|ref\|XP_004302158.1\|	3.0e-36	66.96	PREDICTED: uncharacterized protein LOC101312646 [Fragaria vesca subsp. vesca]	[more]
gi\|703154914\|ref\|XP_010111066.1\|	8.6e-36	66.12	hypothetical protein L484_015121 [Morus notabilis]	[more]
gi\|645223037\|ref\|XP_008218438.1\|	7.3e-35	61.60	PREDICTED: uncharacterized protein LOC103318784 [Prunus mume]	[more]

Annotated Terms

The following terms have been associated with this mRNA:

Vocabulary: **INTERPRO**
Term	Definition

GO Annotation

GO Assignments

This mRNA is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
CmaCh05G007540	CmaCh05G007540	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
CmaCh05G007540.1	CmaCh05G007540.1-protein	polypeptide

The following three_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
CmaCh05G007540.1.three_prime_UTR.1	CmaCh05G007540.1.three_prime_UTR.1	three_prime_UTR

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
CmaCh05G007540.1.CDS.2	CmaCh05G007540.1.CDS.2	CDS
CmaCh05G007540.1.CDS.1	CmaCh05G007540.1.CDS.1	CDS

The following five_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
CmaCh05G007540.1.five_prime_UTR.1	CmaCh05G007540.1.five_prime_UTR.1	five_prime_UTR

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
CmaCh05G007540.1.exon.2	CmaCh05G007540.1.exon.2	exon
CmaCh05G007540.1.exon.1	CmaCh05G007540.1.exon.1	exon

InterPro

Analysis Name: InterPro Annotations of Cucurbita maxima
Date Performed: 2017-05-20


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR33786	FAMILY NOT NAMED	coord: 17..123 score: 2.8
None	No IPR available	PANTHER	PTHR33786:SF2	SUBFAMILY NOT NAMED	coord: 17..123 score: 2.8