CmaCh05G004520.1 (mRNA) Cucurbita maxima (Rimu) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CmaCh05G004520.1
Type	mRNA
Organism	Cucurbita maxima (Cucurbita maxima (Rimu))
Description	RNA-binding protein
Location	Cma_Chr05 : 2073127 .. 2075297 (+)
Sequence length	1024

Genome Viewer

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

CCCAATATTAGGCCCATACTGTCTCATACGGCCCAAGAACGCAACAAACCCAATAGGCCCAAAAACAAGAACAAAAAGCGATCAAGTACAGAGAAGAAATAGGCGTCGACGAAGCAGAAGAATCCTGAAGAAAAGAGCATAAACGCCTCTAATGGCGCAGGCTGTTCAGAAAAATACTCTGTACGTTGGTGGTTTGGCGGAGGAGGTGAACGAGTCTATTCTACACGCAGCCTTCATTCCCTTCGGCGACATCAAAGATGTAAAGACTCCACTGGATCAAGCCACTCAGAAGCACCGTTCCTTCGGCTTCGTCACTTTCTTGGAGAAGGAAGATGCATCCGCCGCCATGGATAATATGGACGGTGCTGAGCTCTACGGCCGTGTCCTCACTGTCAACTATGCCCTCCCCGAGCGTATTAAGGGTGGTGAACAAGGATGGGCTGCCCAACCTAGTAAGTTCCCCTTTTCCTTAAACCCTAATTATTTTCATCTATTGTTTCTCTGCATTTGTGGAATTCCGTTTGTGTTACATCTCATTGTTGATTGATAAATTCTTAGGTGTGCTCGGTTACCAATTTTGCTCTAACTTCATGCTTATGATAGGAGTCCTTGAAAATAGAAATAGAATTTATGCAATCTATTTGGTTGCATTGCATACAATAGTGGTTCGTTGGTTATATTCTCAATCTTCAATTTCATTCTTACAATTTCAAATGTTTTGTTAGTGCAATAAAAAGTTTCAGACTGGCTGATTTCTTATTTGATTTCAAATCAAATACATGTATCTTAAAGCAGAAGTTCGGATACAATACAGAAGTTTAAACAAAGACTGAAAATGATTTATATGCAAAACTCTGTGAAGGACCCGAAGCTAACAATTTAAAAAGTAAACTAAAATTTGGTTCATGTGGAAGTTCTGGACCAAAATTAGATTTAAACAGCTTATCATTTTCTGGTCCCGAAGTTTAAACCTTAGAACAAGATTTGGAAATTATTTTAAGATTTGGACTCTGTCATTTTAGGATTTATTTAGATTATGTTTATGTATCTATATCTCCTGCCTTGGTTGCTAATTACAAGTATTGCAATCTATGGAATTAGCTTGCTGATAGTTTCCTCCATTCCTGCCGATATGAACCTAGCTTAGTAGTTAAAGCATCTATGAAGTTTGAGGTTCAAATTCTCGCAGCTTGTCGTATAAAACAAAAATATGTTCCATCTCCTTGACTGTTCTTTGATTTCTATTTCCCCTCAATGTTCTTGTGGGCTCCTGTATCATCACTACTTGTTCTGCATCTTTTGTGAGCTTAGAATTGAGTGATTAAAGCTTTACTGCACGTCTATTACCGAGTGGCTGGCACTTATGAGAAATTGACTGGTGTAGAGGCCTACTAACTTGAAATTAGCAGCCTCGTTCAGTTCCCATGGATAGTTGTATACTTTGTCTTTCATCATTCCCTTTCCATTTCACTGGACGTTTTTGTATGATTGAAATGTGATGCATTGCAATAGTGATCTTGCAAATGGGTCTGAGTGAGTGATTTTCCCCCTCTTCTTGTCCTAATTGTTACTAAACAAACGCCTTCCTTTAAATTATAGTTTGGGCGGATGCGGATACGTGGTTTGAAAGGCAGCAACAAGAGGAGGAAATGCAGCGGATTCAGGCTGAGAATCGCGCAACTATGCAGGCTGCTGAGGAGCTGCACAGAAAGAAAGTAGCCCAAGAGCGGGAAGGGGAAAAAGAAGACGAGGTAGACACGAAGGACGATCCCATGGCTAAGGCTGAAGCCGAGGCATTAAGACAGAACAGTTAAAGAGACAAACTTTAGTGAGATTTGAACTTGCTTCAATGCAAGTGAAAGAGAGAGATAGAGAGGCAGAACATGGAAAAACCTGCCGTGCTCTGAGCTTGCTATTGCTATTCACAATGCTGATGCATGTTAAGCTTCCGCATTGTTTTGTTTCTGTAGTTAATTCTATTCACAAAGCATAGTTTGAAAAGCTGAAAAACGCTTACCTTCGTTGAAAACTTGTAATTTTATTGAAAGAAGAGCTAGAAATCAGGAGTTTTTAATGCGCAGCATTGTTGTTTTAATTCCCCAATTGGTTTCTTTTAGGGTTGATCCTGGAAGACTCTTCTTTCTTTCAAGATTGAAGAGTTAAGTTTGTCT

mRNA sequence

CCCAATATTAGGCCCATACTGTCTCATACGGCCCAAGAACGCAACAAACCCAATAGGCCCAAAAACAAGAACAAAAAGCGATCAAGTACAGAGAAGAAATAGGCGTCGACGAAGCAGAAGAATCCTGAAGAAAAGAGCATAAACGCCTCTAATGGCGCAGGCTGTTCAGAAAAATACTCTGTACGTTGGTGGTTTGGCGGAGGAGGTGAACGAGTCTATTCTACACGCAGCCTTCATTCCCTTCGGCGACATCAAAGATGTAAAGACTCCACTGGATCAAGCCACTCAGAAGCACCGTTCCTTCGGCTTCGTCACTTTCTTGGAGAAGGAAGATGCATCCGCCGCCATGGATAATATGGACGGTGCTGAGCTCTACGGCCGTGTCCTCACTGTCAACTATGCCCTCCCCGAGCGTATTAAGGGTGGTGAACAAGGATGGGCTGCCCAACCTATTTGGGCGGATGCGGATACGTGGTTTGAAAGGCAGCAACAAGAGGAGGAAATGCAGCGGATTCAGGCTGAGAATCGCGCAACTATGCAGGCTGCTGAGGAGCTGCACAGAAAGAAAGTAGCCCAAGAGCGGGAAGGGGAAAAAGAAGACGAGGTAGACACGAAGGACGATCCCATGGCTAAGGCTGAAGCCGAGGCATTAAGACAGAACAGTTAAAGAGACAAACTTTAGTGAGATTTGAACTTGCTTCAATGCAAGTGAAAGAGAGAGATAGAGAGGCAGAACATGGAAAAACCTGCCGTGCTCTGAGCTTGCTATTGCTATTCACAATGCTGATGCATGTTAAGCTTCCGCATTGTTTTGTTTCTGTAGTTAATTCTATTCACAAAGCATAGTTTGAAAAGCTGAAAAACGCTTACCTTCGTTGAAAACTTGTAATTTTATTGAAAGAAGAGCTAGAAATCAGGAGTTTTTAATGCGCAGCATTGTTGTTTTAATTCCCCAATTGGTTTCTTTTAGGGTTGATCCTGGAAGACTCTTCTTTCTTTCAAGATTGAAGAGTTAAGTTTGTCT

Coding sequence (CDS)

ATGGCGCAGGCTGTTCAGAAAAATACTCTGTACGTTGGTGGTTTGGCGGAGGAGGTGAACGAGTCTATTCTACACGCAGCCTTCATTCCCTTCGGCGACATCAAAGATGTAAAGACTCCACTGGATCAAGCCACTCAGAAGCACCGTTCCTTCGGCTTCGTCACTTTCTTGGAGAAGGAAGATGCATCCGCCGCCATGGATAATATGGACGGTGCTGAGCTCTACGGCCGTGTCCTCACTGTCAACTATGCCCTCCCCGAGCGTATTAAGGGTGGTGAACAAGGATGGGCTGCCCAACCTATTTGGGCGGATGCGGATACGTGGTTTGAAAGGCAGCAACAAGAGGAGGAAATGCAGCGGATTCAGGCTGAGAATCGCGCAACTATGCAGGCTGCTGAGGAGCTGCACAGAAAGAAAGTAGCCCAAGAGCGGGAAGGGGAAAAAGAAGACGAGGTAGACACGAAGGACGATCCCATGGCTAAGGCTGAAGCCGAGGCATTAAGACAGAACAGTTAA

Protein sequence

MAQAVQKNTLYVGGLAEEVNESILHAAFIPFGDIKDVKTPLDQATQKHRSFGFVTFLEKEDASAAMDNMDGAELYGRVLTVNYALPERIKGGEQGWAAQPIWADADTWFERQQQEEEMQRIQAENRATMQAAEELHRKKVAQEREGEKEDEVDTKDDPMAKAEAEALRQNS

Homology

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BLAST of CmaCh05G004520.1 vs. Swiss-Prot
Match: PPIE_MOUSE (Peptidyl-prolyl cis-trans isomerase E OS=Mus musculus GN=Ppie PE=1 SV=2)

HSP 1 Score: 125.6 bits (314), Expect = 5.4e-28
Identity = 60/108 (55.56%), Postives = 79/108 (73.15%), Query Frame = 1


Query: 4   AVQKNTLYVGGLAEEVNESILHAAFIPFGDIKDVKTPLDQATQKHRSFGFVTFLEKEDAS 63
           A  K  LYVGGLAEEV++ +LHAAFIPFGDI D++ PLD  T+KHR F FV F   EDA+
Sbjct: 2   ATTKRVLYVGGLAEEVDDKVLHAAFIPFGDITDIQIPLDYETEKHRGFAFVEFELAEDAA 61

Query: 64  AAMDNMDGAELYGRVLTVNYALPERIKGGEQGWAAQPIWADADTWFER 112
           AA+DNM+ +EL+GR + VN A P RIK G    +++P+W+D D W ++
Sbjct: 62  AAIDNMNESELFGRTIRVNLAKPMRIKEG----SSRPVWSD-DDWLKK 104

[Close]

BLAST of CmaCh05G004520.1 vs. Swiss-Prot
Match: PPIE_BOVIN (Peptidyl-prolyl cis-trans isomerase E OS=Bos taurus GN=PPIE PE=2 SV=1)

HSP 1 Score: 125.6 bits (314), Expect = 5.4e-28
Identity = 60/108 (55.56%), Postives = 79/108 (73.15%), Query Frame = 1


Query: 4   AVQKNTLYVGGLAEEVNESILHAAFIPFGDIKDVKTPLDQATQKHRSFGFVTFLEKEDAS 63
           A  K  LYVGGLAEEV++ +LHAAFIPFGDI D++ PLD  T+KHR F FV F   EDA+
Sbjct: 2   ATTKRVLYVGGLAEEVDDKVLHAAFIPFGDITDIQIPLDYETEKHRGFAFVEFELAEDAA 61

Query: 64  AAMDNMDGAELYGRVLTVNYALPERIKGGEQGWAAQPIWADADTWFER 112
           AA+DNM+ +EL+GR + VN A P RIK G    +++P+W+D D W ++
Sbjct: 62  AAIDNMNESELFGRTIRVNLAKPMRIKEG----SSRPVWSD-DDWLKK 104

[Close]

BLAST of CmaCh05G004520.1 vs. Swiss-Prot
Match: PPIE_PONAB (Peptidyl-prolyl cis-trans isomerase E OS=Pongo abelii GN=PPIE PE=2 SV=1)

HSP 1 Score: 121.7 bits (304), Expect = 7.8e-27
Identity = 67/139 (48.20%), Postives = 91/139 (65.47%), Query Frame = 1


Query: 4   AVQKNTLYVGGLAEEVNESILHAAFIPFGDIKDVKTPLDQATQKHRSFGFVTFLEKEDAS 63
           A  K  LYVGGLAEEV++ +LHAAFIPFGDI D++ PLD  T+KHR F FV F   EDA+
Sbjct: 2   ATTKRVLYVGGLAEEVDDKVLHAAFIPFGDITDIQIPLDYETEKHRGFAFVEFELAEDAA 61

Query: 64  AAMDNMDGAELYGRVLTVNYALPERIKGGEQGWAAQPIWADADTW--------FERQQQE 123
           AA+DNM+ +EL+GR + VN A P RIK G    +++P+W+D D W         E  ++E
Sbjct: 62  AAIDNMNESELFGRTIRVNLAKPMRIKEG----SSRPVWSD-DDWLKKFSGKTLEENKEE 121

Query: 124 EEMQRIQAENRATMQAAEE 135
           E  +  +AE +    AA++
Sbjct: 122 EGSEPPKAETQEGEPAAKK 135

[Close]

BLAST of CmaCh05G004520.1 vs. Swiss-Prot
Match: PPIE_HUMAN (Peptidyl-prolyl cis-trans isomerase E OS=Homo sapiens GN=PPIE PE=1 SV=1)

HSP 1 Score: 119.8 bits (299), Expect = 2.9e-26
Identity = 68/139 (48.92%), Postives = 91/139 (65.47%), Query Frame = 1


Query: 4   AVQKNTLYVGGLAEEVNESILHAAFIPFGDIKDVKTPLDQATQKHRSFGFVTFLEKEDAS 63
           A  K  LYVGGLAEEV++ +LHAAFIPFGDI D++ PLD  T+KHR F FV F   EDA+
Sbjct: 2   ATTKRVLYVGGLAEEVDDKVLHAAFIPFGDITDIQIPLDYETEKHRGFAFVEFELAEDAA 61

Query: 64  AAMDNMDGAELYGRVLTVNYALPERIKGGEQGWAAQPIWADADTW---FERQQQEEEMQR 123
           AA+DNM+ +EL+GR + VN A P RIK G    +++P+W+D D W   F  +  EE  + 
Sbjct: 62  AAIDNMNESELFGRTIRVNLAKPMRIKEG----SSRPVWSD-DDWLKKFSGKTLEENKEE 121

Query: 124 IQAE-NRATMQAAEELHRK 139
             +E  +A  Q  E + +K
Sbjct: 122 EGSEPPKAETQEGEPIAKK 135

[Close]

BLAST of CmaCh05G004520.1 vs. Swiss-Prot
Match: PPIE_DROME (Peptidyl-prolyl cis-trans isomerase E OS=Drosophila melanogaster GN=cyp33 PE=1 SV=1)

HSP 1 Score: 109.0 bits (271), Expect = 5.2e-23
Identity = 62/141 (43.97%), Postives = 87/141 (61.70%), Query Frame = 1


Query: 7   KNTLYVGGLAEEVNESILHAAFIPFGDIKDVKTPLDQATQKHRSFGFVTFLEKEDASAAM 66
           K T+YVGGLA+EV E +L+ AFIPFGDI D++ P D  +Q+HR F F+ + + EDA+AA+
Sbjct: 5   KRTIYVGGLADEVTERLLNNAFIPFGDIADIQMPADYESQRHRGFAFIEYEQSEDAAAAI 64

Query: 67  DNMDGAELYGRVLTVNYALPERIKGGEQGWAAQPIWADADTWFERQ-----QQEEEMQRI 126
           DNM+ +EL GR + VN A P R+K      + +PIWAD D W ++      Q E E +  
Sbjct: 65  DNMNDSELCGRTIRVNLAKPVRVKED----SFKPIWAD-DDWLQKHAGATLQPEGEPEAE 124

Query: 127 QAENRATMQAAEELHRKKVAQ 143
           + E  +T  A  E   K+  Q
Sbjct: 125 KVETPSTGPAVIEKAEKRNPQ 140

[Close]

BLAST of CmaCh05G004520.1 vs. TrEMBL
Match: A0A0A0KGY3_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_6G366550 PE=4 SV=1)

HSP 1 Score: 319.3 bits (817), Expect = 2.8e-84
Identity = 163/171 (95.32%), Postives = 168/171 (98.25%), Query Frame = 1


Query: 1   MAQAVQKNTLYVGGLAEEVNESILHAAFIPFGDIKDVKTPLDQATQKHRSFGFVTFLEKE 60
           MAQAVQKNTLYVGGLAEEVNESILHAAFIPFGDIKDVKTPLDQATQKHRSFGFVTFLEKE
Sbjct: 1   MAQAVQKNTLYVGGLAEEVNESILHAAFIPFGDIKDVKTPLDQATQKHRSFGFVTFLEKE 60

Query: 61  DASAAMDNMDGAELYGRVLTVNYALPERIKGGEQGWAAQPIWADADTWFERQQQEEEMQR 120
           DASAAMDNMDGAELYGRVLTVNYALPERIKGGEQGWAAQPIWADADTWFERQQQEEEMQR
Sbjct: 61  DASAAMDNMDGAELYGRVLTVNYALPERIKGGEQGWAAQPIWADADTWFERQQQEEEMQR 120

Query: 121 IQAENRATMQAAEELHRKKVAQEREGEKEDEVDTKDDPMAKAEAEALRQNS 172
           +QAENRA M+AAEELHRKK+AQEREGEK++EVDTK DPMAKAEAE LRQNS
Sbjct: 121 LQAENRAAMEAAEELHRKKLAQEREGEKDEEVDTKVDPMAKAEAEVLRQNS 171

[Close]

BLAST of CmaCh05G004520.1 vs. TrEMBL
Match: A0A067LA00_JATCU (Uncharacterized protein OS=Jatropha curcas GN=JCGZ_15732 PE=4 SV=1)

HSP 1 Score: 308.5 bits (789), Expect = 5.0e-81
Identity = 155/167 (92.81%), Postives = 163/167 (97.60%), Query Frame = 1


Query: 5   VQKNTLYVGGLAEEVNESILHAAFIPFGDIKDVKTPLDQATQKHRSFGFVTFLEKEDASA 64
           VQKNTLYVGGLAEEVNESILHAAFIPFGDIKDVKTPLDQATQKHRSFGFVTFLEKEDASA
Sbjct: 12  VQKNTLYVGGLAEEVNESILHAAFIPFGDIKDVKTPLDQATQKHRSFGFVTFLEKEDASA 71

Query: 65  AMDNMDGAELYGRVLTVNYALPERIKGGEQGWAAQPIWADADTWFERQQQEEEMQRIQAE 124
           AMDNMDGAELYGRVLTVNYALPERIKGGEQGWAAQPIWADADTWFERQQQ+EEM+R+QAE
Sbjct: 72  AMDNMDGAELYGRVLTVNYALPERIKGGEQGWAAQPIWADADTWFERQQQQEEMERVQAE 131

Query: 125 NRATMQAAEELHRKKVAQEREGEKEDEVDTKDDPMAKAEAEALRQNS 172
           NRA MQAAEELHRKK+A+EREGEKED V+ KDDPMA+AEAE L+QNS
Sbjct: 132 NRAAMQAAEELHRKKMAEEREGEKEDAVEVKDDPMARAEAEVLKQNS 178

[Close]

BLAST of CmaCh05G004520.1 vs. TrEMBL
Match: A0A061DK54_THECC (ATPase E1 OS=Theobroma cacao GN=TCM_001641 PE=4 SV=1)

HSP 1 Score: 307.4 bits (786), Expect = 1.1e-80
Identity = 155/169 (91.72%), Postives = 164/169 (97.04%), Query Frame = 1


Query: 3   QAVQKNTLYVGGLAEEVNESILHAAFIPFGDIKDVKTPLDQATQKHRSFGFVTFLEKEDA 62
           QAVQKNTLYVGGLAEEVNE+ILHAAFIPFGDIKDVKTPLDQATQKHRSFGFVTFLEKEDA
Sbjct: 4   QAVQKNTLYVGGLAEEVNEAILHAAFIPFGDIKDVKTPLDQATQKHRSFGFVTFLEKEDA 63

Query: 63  SAAMDNMDGAELYGRVLTVNYALPERIKGGEQGWAAQPIWADADTWFERQQQEEEMQRIQ 122
           SAAMDNMDGAELYGRVLTVNYALPERIKGGEQGWAAQPIWADADTWFERQQQEEEMQRIQ
Sbjct: 64  SAAMDNMDGAELYGRVLTVNYALPERIKGGEQGWAAQPIWADADTWFERQQQEEEMQRIQ 123

Query: 123 AENRATMQAAEELHRKKVAQEREGEKEDEVDTKDDPMAKAEAEALRQNS 172
           AEN+A M+AAEELHRKK+A+EREGEKED+ + KDDPMA AEAE L+QN+
Sbjct: 124 AENQAAMRAAEELHRKKMAEEREGEKEDDTEMKDDPMAMAEAEVLKQNN 172

[Close]

BLAST of CmaCh05G004520.1 vs. TrEMBL
Match: D7U1R3_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VIT_05s0102g00560 PE=4 SV=1)

HSP 1 Score: 306.2 bits (783), Expect = 2.5e-80
Identity = 155/171 (90.64%), Postives = 164/171 (95.91%), Query Frame = 1


Query: 1   MAQAVQKNTLYVGGLAEEVNESILHAAFIPFGDIKDVKTPLDQATQKHRSFGFVTFLEKE 60
           M Q VQKNTLYVGGLAEEVNESILH+AFIPFGDIKDVKTPLDQATQKHRSFGFVTFLEKE
Sbjct: 1   MNQPVQKNTLYVGGLAEEVNESILHSAFIPFGDIKDVKTPLDQATQKHRSFGFVTFLEKE 60

Query: 61  DASAAMDNMDGAELYGRVLTVNYALPERIKGGEQGWAAQPIWADADTWFERQQQEEEMQR 120
           DA+AAMDNMDGAELYGRVLTVNYALPERIKGGEQGWAAQPIWADADTWFERQQQEEEMQR
Sbjct: 61  DAAAAMDNMDGAELYGRVLTVNYALPERIKGGEQGWAAQPIWADADTWFERQQQEEEMQR 120

Query: 121 IQAENRATMQAAEELHRKKVAQEREGEKEDEVDTKDDPMAKAEAEALRQNS 172
           IQAENRA MQAAEELHRKK+AQEREGEK++EV+ KDDPMA+ EAE L Q++
Sbjct: 121 IQAENRAAMQAAEELHRKKMAQEREGEKDEEVEGKDDPMARVEAEVLNQSN 171

[Close]

BLAST of CmaCh05G004520.1 vs. TrEMBL
Match: A0A0D2RAE8_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_008G060600 PE=4 SV=1)

HSP 1 Score: 305.1 bits (780), Expect = 5.5e-80
Identity = 153/169 (90.53%), Postives = 164/169 (97.04%), Query Frame = 1


Query: 3   QAVQKNTLYVGGLAEEVNESILHAAFIPFGDIKDVKTPLDQATQKHRSFGFVTFLEKEDA 62
           QAVQKNTLYVGGLAEEVNE+ILHAAFIPFGDIKDVKTPLDQATQKHRSFGFVTFLEKEDA
Sbjct: 4   QAVQKNTLYVGGLAEEVNETILHAAFIPFGDIKDVKTPLDQATQKHRSFGFVTFLEKEDA 63

Query: 63  SAAMDNMDGAELYGRVLTVNYALPERIKGGEQGWAAQPIWADADTWFERQQQEEEMQRIQ 122
           +AAMDNMDGAELYGRVLTVNYALPERIKGGEQGWAAQPIWADADTWFERQQQEEEMQRIQ
Sbjct: 64  AAAMDNMDGAELYGRVLTVNYALPERIKGGEQGWAAQPIWADADTWFERQQQEEEMQRIQ 123

Query: 123 AENRATMQAAEELHRKKVAQEREGEKEDEVDTKDDPMAKAEAEALRQNS 172
           AEN+A M+AAEELHRKK+A+ER+GEKEDE + KDDPMA+AEAE  +QN+
Sbjct: 124 AENQAAMRAAEELHRKKMAEERQGEKEDETEMKDDPMARAEAEVSKQNN 172

[Close]

BLAST of CmaCh05G004520.1 vs. TAIR10
Match: AT1G13690.1 (AT1G13690.1 ATPase E1)

HSP 1 Score: 282.7 bits (722), Expect = 1.5e-76
Identity = 138/165 (83.64%), Postives = 158/165 (95.76%), Query Frame = 1


Query: 3   QAVQKNTLYVGGLAEEVNESILHAAFIPFGDIKDVKTPLDQATQKHRSFGFVTFLEKEDA 62
           QA+QKNTLYVGGLA+EVNESILHAAFIPFGDIKDVKTPLDQA QKHRSFGFVTFLE+EDA
Sbjct: 8   QAMQKNTLYVGGLADEVNESILHAAFIPFGDIKDVKTPLDQANQKHRSFGFVTFLEREDA 67

Query: 63  SAAMDNMDGAELYGRVLTVNYALPERIKGGEQGWAAQPIWADADTWFERQQQEEEMQRIQ 122
           SAAMDNMDGAELYGRVLTVNYALPE+IKGGEQGWAA P+WADADTWFERQQQE+E+ ++Q
Sbjct: 68  SAAMDNMDGAELYGRVLTVNYALPEKIKGGEQGWAAHPLWADADTWFERQQQEKEILKMQ 127

Query: 123 AENRATMQAAEELHRKKVAQEREGEKEDEVDTKDDPMAKAEAEAL 168
           AEN+A M+ AEELHRKK+A++R+GE E++ DTK+DPMA+AEA+AL
Sbjct: 128 AENKAAMETAEELHRKKLAEDRQGEMEEDTDTKNDPMARAEADAL 172

[Close]

BLAST of CmaCh05G004520.1 vs. TAIR10
Match: AT5G61030.1 (AT5G61030.1 glycine-rich RNA-binding protein 3)

HSP 1 Score: 80.1 bits (196), Expect = 1.5e-15
Identity = 38/93 (40.86%), Postives = 59/93 (63.44%), Query Frame = 1


Query: 3   QAVQKNTLYVGGLAEEVNESILHAAFIPFGDIKDVKTPLDQATQKHRSFGFVTFLEKEDA 62
           + +  + L++GG+A  ++E  L  AF  +G++ D +  LD+ T + R FGFVTF   E A
Sbjct: 35  RCMSSSKLFIGGMAYSMDEDSLREAFTKYGEVVDTRVILDRETGRSRGFGFVTFTSSEAA 94

Query: 63  SAAMDNMDGAELYGRVLTVNYALPERIKGGEQG 96
           S+A+  +DG +L+GRV+ VNYA  +R  GG  G
Sbjct: 95  SSAIQALDGRDLHGRVVKVNYA-NDRTSGGGFG 126

[Close]

BLAST of CmaCh05G004520.1 vs. TAIR10
Match: AT3G08000.1 (AT3G08000.1 RNA-binding (RRM/RBD/RNP motifs) family protein)

HSP 1 Score: 76.6 bits (187), Expect = 1.6e-14
Identity = 38/91 (41.76%), Postives = 58/91 (63.74%), Query Frame = 1


Query: 2   AQAVQKNTLYVGGLAEEVNESILHAAFIPFGDIKDVKTPLDQATQKHRSFGFVTFLEKED 61
           + A   + L++GGL+  V+E  L  AF  FG++ +V+   D+ + + R FGFV F E+ D
Sbjct: 35  SSASPSSKLFIGGLSWSVDEQSLKDAFSSFGEVAEVRIAYDKGSGRSRGFGFVDFAEEGD 94

Query: 62  ASAAMDNMDGAELYGRVLTVNYALPERIKGG 93
           A +A D MDG  L GR L +++AL ER++GG
Sbjct: 95  ALSAKDAMDGKGLLGRPLRISFAL-ERVRGG 124

[Close]

BLAST of CmaCh05G004520.1 vs. TAIR10
Match: AT4G39260.1 (AT4G39260.1 cold, circadian rhythm, and RNA binding 1)

HSP 1 Score: 67.8 bits (164), Expect = 7.5e-12
Identity = 36/85 (42.35%), Postives = 49/85 (57.65%), Query Frame = 1


Query: 11 YVGGLAEEVNESILHAAFIPFGDIKDVKTPLDQATQKHRSFGFVTFLEKEDASAAMDNMD 70
          +VGGLA   N+  L   F  FGD+ D K   D+ + + R FGFVTF +++    A++ M+
Sbjct: 9  FVGGLAWATNDEDLQRTFSQFGDVIDSKIINDRESGRSRGFGFVTFKDEKAMRDAIEEMN 68

Query: 71 GAELYGRVLTVNYALPERIKGGEQG 96
          G EL GRV+TVN A      GG  G
Sbjct: 69 GKELDGRVITVNEAQSRGSGGGGGG 93

[Close]

BLAST of CmaCh05G004520.1 vs. TAIR10
Match: AT4G13850.1 (AT4G13850.1 glycine-rich RNA-binding protein 2)

HSP 1 Score: 67.4 bits (163), Expect = 9.8e-12
Identity = 33/75 (44.00%), Postives = 48/75 (64.00%), Query Frame = 1


Query: 10  LYVGGLAEEVNESILHAAFIPFGDIKDVKTPLDQATQKHRSFGFVTFLEKEDASAAMDNM 69
           L++GGL+   +++ L  AF  FGD+ D K  +D+ T + R FGFV F ++  A+AA+  M
Sbjct: 37  LFIGGLSWGTDDASLRDAFAHFGDVVDAKVIVDRETGRSRGFGFVNFNDEGAATAAISEM 96

Query: 70  DGAELYGRVLTVNYA 85
           DG EL GR + VN A
Sbjct: 97  DGKELNGRHIRVNPA 111

[Close]

BLAST of CmaCh05G004520.1 vs. NCBI nr
Match: gi|659089315|ref|XP_008445441.1| (PREDICTED: peptidyl-prolyl cis-trans isomerase E [Cucumis melo])

HSP 1 Score: 320.5 bits (820), Expect = 1.8e-84
Identity = 163/171 (95.32%), Postives = 168/171 (98.25%), Query Frame = 1


Query: 1   MAQAVQKNTLYVGGLAEEVNESILHAAFIPFGDIKDVKTPLDQATQKHRSFGFVTFLEKE 60
           MAQAVQKNTLYVGGLAEEVNESILHAAFIPFGDIKDVKTPLDQATQKHRSFGFVTFLEKE
Sbjct: 1   MAQAVQKNTLYVGGLAEEVNESILHAAFIPFGDIKDVKTPLDQATQKHRSFGFVTFLEKE 60

Query: 61  DASAAMDNMDGAELYGRVLTVNYALPERIKGGEQGWAAQPIWADADTWFERQQQEEEMQR 120
           DASAAMDNMDGAELYGRVLTVNYALPERIKGGEQGWAAQPIWADADTWFERQQQEEEMQR
Sbjct: 61  DASAAMDNMDGAELYGRVLTVNYALPERIKGGEQGWAAQPIWADADTWFERQQQEEEMQR 120

Query: 121 IQAENRATMQAAEELHRKKVAQEREGEKEDEVDTKDDPMAKAEAEALRQNS 172
           +QAENRA M+AAEELHRKK+AQEREGEK++EVDTKDDPMAKAEAE LRQ S
Sbjct: 121 LQAENRAAMEAAEELHRKKLAQEREGEKDEEVDTKDDPMAKAEAEVLRQKS 171

[Close]

BLAST of CmaCh05G004520.1 vs. NCBI nr
Match: gi|449452837|ref|XP_004144165.1| (PREDICTED: peptidyl-prolyl cis-trans isomerase E [Cucumis sativus])

HSP 1 Score: 319.3 bits (817), Expect = 4.0e-84
Identity = 163/171 (95.32%), Postives = 168/171 (98.25%), Query Frame = 1


Query: 1   MAQAVQKNTLYVGGLAEEVNESILHAAFIPFGDIKDVKTPLDQATQKHRSFGFVTFLEKE 60
           MAQAVQKNTLYVGGLAEEVNESILHAAFIPFGDIKDVKTPLDQATQKHRSFGFVTFLEKE
Sbjct: 1   MAQAVQKNTLYVGGLAEEVNESILHAAFIPFGDIKDVKTPLDQATQKHRSFGFVTFLEKE 60

Query: 61  DASAAMDNMDGAELYGRVLTVNYALPERIKGGEQGWAAQPIWADADTWFERQQQEEEMQR 120
           DASAAMDNMDGAELYGRVLTVNYALPERIKGGEQGWAAQPIWADADTWFERQQQEEEMQR
Sbjct: 61  DASAAMDNMDGAELYGRVLTVNYALPERIKGGEQGWAAQPIWADADTWFERQQQEEEMQR 120

Query: 121 IQAENRATMQAAEELHRKKVAQEREGEKEDEVDTKDDPMAKAEAEALRQNS 172
           +QAENRA M+AAEELHRKK+AQEREGEK++EVDTK DPMAKAEAE LRQNS
Sbjct: 121 LQAENRAAMEAAEELHRKKLAQEREGEKDEEVDTKVDPMAKAEAEVLRQNS 171

[Close]

BLAST of CmaCh05G004520.1 vs. NCBI nr
Match: gi|1009154457|ref|XP_015895181.1| (PREDICTED: peptidyl-prolyl cis-trans isomerase E [Ziziphus jujuba])

HSP 1 Score: 312.0 bits (798), Expect = 6.5e-82
Identity = 158/168 (94.05%), Postives = 163/168 (97.02%), Query Frame = 1


Query: 3   QAVQKNTLYVGGLAEEVNESILHAAFIPFGDIKDVKTPLDQATQKHRSFGFVTFLEKEDA 62
           QAVQKNTLYVGGLAEEVNESILHAAFIPFGDIKDVKTPLDQATQKHRSFGFVTFLE+EDA
Sbjct: 6   QAVQKNTLYVGGLAEEVNESILHAAFIPFGDIKDVKTPLDQATQKHRSFGFVTFLEREDA 65

Query: 63  SAAMDNMDGAELYGRVLTVNYALPERIKGGEQGWAAQPIWADADTWFERQQQEEEMQRIQ 122
           SAAMDNMDGAELYGRVLTVNYALPERIKGGEQGWAAQPIWADADTWFERQQQEEEMQRIQ
Sbjct: 66  SAAMDNMDGAELYGRVLTVNYALPERIKGGEQGWAAQPIWADADTWFERQQQEEEMQRIQ 125

Query: 123 AENRATMQAAEELHRKKVAQEREGEKEDEVDTKDDPMAKAEAEALRQN 171
           AENRA MQ AEELHRKK+AQEREGEKEDE + KDDPMA+AEAE L+QN
Sbjct: 126 AENRAAMQEAEELHRKKMAQEREGEKEDETEVKDDPMARAEAEVLKQN 173

[Close]

BLAST of CmaCh05G004520.1 vs. NCBI nr
Match: gi|802568590|ref|XP_012067811.1| (PREDICTED: peptidyl-prolyl cis-trans isomerase E [Jatropha curcas])

HSP 1 Score: 308.5 bits (789), Expect = 7.1e-81
Identity = 155/167 (92.81%), Postives = 163/167 (97.60%), Query Frame = 1


Query: 5   VQKNTLYVGGLAEEVNESILHAAFIPFGDIKDVKTPLDQATQKHRSFGFVTFLEKEDASA 64
           VQKNTLYVGGLAEEVNESILHAAFIPFGDIKDVKTPLDQATQKHRSFGFVTFLEKEDASA
Sbjct: 12  VQKNTLYVGGLAEEVNESILHAAFIPFGDIKDVKTPLDQATQKHRSFGFVTFLEKEDASA 71

Query: 65  AMDNMDGAELYGRVLTVNYALPERIKGGEQGWAAQPIWADADTWFERQQQEEEMQRIQAE 124
           AMDNMDGAELYGRVLTVNYALPERIKGGEQGWAAQPIWADADTWFERQQQ+EEM+R+QAE
Sbjct: 72  AMDNMDGAELYGRVLTVNYALPERIKGGEQGWAAQPIWADADTWFERQQQQEEMERVQAE 131

Query: 125 NRATMQAAEELHRKKVAQEREGEKEDEVDTKDDPMAKAEAEALRQNS 172
           NRA MQAAEELHRKK+A+EREGEKED V+ KDDPMA+AEAE L+QNS
Sbjct: 132 NRAAMQAAEELHRKKMAEEREGEKEDAVEVKDDPMARAEAEVLKQNS 178

[Close]

BLAST of CmaCh05G004520.1 vs. NCBI nr
Match: gi|590709608|ref|XP_007048600.1| (ATPase E1 [Theobroma cacao])

HSP 1 Score: 307.4 bits (786), Expect = 1.6e-80
Identity = 155/169 (91.72%), Postives = 164/169 (97.04%), Query Frame = 1


Query: 3   QAVQKNTLYVGGLAEEVNESILHAAFIPFGDIKDVKTPLDQATQKHRSFGFVTFLEKEDA 62
           QAVQKNTLYVGGLAEEVNE+ILHAAFIPFGDIKDVKTPLDQATQKHRSFGFVTFLEKEDA
Sbjct: 4   QAVQKNTLYVGGLAEEVNEAILHAAFIPFGDIKDVKTPLDQATQKHRSFGFVTFLEKEDA 63

Query: 63  SAAMDNMDGAELYGRVLTVNYALPERIKGGEQGWAAQPIWADADTWFERQQQEEEMQRIQ 122
           SAAMDNMDGAELYGRVLTVNYALPERIKGGEQGWAAQPIWADADTWFERQQQEEEMQRIQ
Sbjct: 64  SAAMDNMDGAELYGRVLTVNYALPERIKGGEQGWAAQPIWADADTWFERQQQEEEMQRIQ 123

Query: 123 AENRATMQAAEELHRKKVAQEREGEKEDEVDTKDDPMAKAEAEALRQNS 172
           AEN+A M+AAEELHRKK+A+EREGEKED+ + KDDPMA AEAE L+QN+
Sbjct: 124 AENQAAMRAAEELHRKKMAEEREGEKEDDTEMKDDPMAMAEAEVLKQNN 172

The following BLAST results are available for this feature:

BLAST of CmaCh05G004520.1 vs. Swiss-Prot


Match Name	E-value	Identity	Description
PPIE_MOUSE	5.4e-28	55.56	Peptidyl-prolyl cis-trans isomerase E OS=Mus musculus GN=Ppie PE=1 SV=2	[more]
PPIE_BOVIN	5.4e-28	55.56	Peptidyl-prolyl cis-trans isomerase E OS=Bos taurus GN=PPIE PE=2 SV=1	[more]
PPIE_PONAB	7.8e-27	48.20	Peptidyl-prolyl cis-trans isomerase E OS=Pongo abelii GN=PPIE PE=2 SV=1	[more]
PPIE_HUMAN	2.9e-26	48.92	Peptidyl-prolyl cis-trans isomerase E OS=Homo sapiens GN=PPIE PE=1 SV=1	[more]
PPIE_DROME	5.2e-23	43.97	Peptidyl-prolyl cis-trans isomerase E OS=Drosophila melanogaster GN=cyp33 PE=1 S...	[more]

BLAST of CmaCh05G004520.1 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0KGY3_CUCSA	2.8e-84	95.32	Uncharacterized protein OS=Cucumis sativus GN=Csa_6G366550 PE=4 SV=1	[more]
A0A067LA00_JATCU	5.0e-81	92.81	Uncharacterized protein OS=Jatropha curcas GN=JCGZ_15732 PE=4 SV=1	[more]
A0A061DK54_THECC	1.1e-80	91.72	ATPase E1 OS=Theobroma cacao GN=TCM_001641 PE=4 SV=1	[more]
D7U1R3_VITVI	2.5e-80	90.64	Putative uncharacterized protein OS=Vitis vinifera GN=VIT_05s0102g00560 PE=4 SV=...	[more]
A0A0D2RAE8_GOSRA	5.5e-80	90.53	Uncharacterized protein OS=Gossypium raimondii GN=B456_008G060600 PE=4 SV=1	[more]

BLAST of CmaCh05G004520.1 vs. TAIR10


Match Name	E-value	Identity	Description
AT1G13690.1	1.5e-76	83.64	ATPase E1	[more]
AT5G61030.1	1.5e-15	40.86	glycine-rich RNA-binding protein 3	[more]
AT3G08000.1	1.6e-14	41.76	RNA-binding (RRM/RBD/RNP motifs) family protein	[more]
AT4G39260.1	7.5e-12	42.35	cold, circadian rhythm, and RNA binding 1	[more]
AT4G13850.1	9.8e-12	44.00	glycine-rich RNA-binding protein 2	[more]

BLAST of CmaCh05G004520.1 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|659089315\|ref\|XP_008445441.1\|	1.8e-84	95.32	PREDICTED: peptidyl-prolyl cis-trans isomerase E [Cucumis melo]	[more]
gi\|449452837\|ref\|XP_004144165.1\|	4.0e-84	95.32	PREDICTED: peptidyl-prolyl cis-trans isomerase E [Cucumis sativus]	[more]
gi\|1009154457\|ref\|XP_015895181.1\|	6.5e-82	94.05	PREDICTED: peptidyl-prolyl cis-trans isomerase E [Ziziphus jujuba]	[more]
gi\|802568590\|ref\|XP_012067811.1\|	7.1e-81	92.81	PREDICTED: peptidyl-prolyl cis-trans isomerase E [Jatropha curcas]	[more]
gi\|590709608\|ref\|XP_007048600.1\|	1.6e-80	91.72	ATPase E1 [Theobroma cacao]	[more]

Annotated Terms

The following terms have been associated with this mRNA:

Vocabulary: **INTERPRO**
Term	Definition
IPR000504	RRM_dom
IPR012677	Nucleotide-bd_a/b_plait_sf
IPR024936	Cyclophilin-type_PPIase

Vocabulary: **Molecular Function**
Term	Definition
GO:0003676	nucleic acid binding
GO:0000166	nucleotide binding
GO:0003755	peptidyl-prolyl cis-trans isomerase activity

Vocabulary: **Biological Process**
Term	Definition
GO:0006457	protein folding

GO Annotation

GO Assignments

This mRNA is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006457	protein folding
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003676	nucleic acid binding
molecular_function	GO:0000166	nucleotide binding
molecular_function	GO:0003755	peptidyl-prolyl cis-trans isomerase activity

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
CmaCh05G004520	CmaCh05G004520	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
CmaCh05G004520.1	CmaCh05G004520.1-protein	polypeptide

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
CmaCh05G004520.1.exon.2	CmaCh05G004520.1.exon.2	exon
CmaCh05G004520.1.exon.1	CmaCh05G004520.1.exon.1	exon

The following five_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
CmaCh05G004520.1.five_prime_UTR.1	CmaCh05G004520.1.five_prime_UTR.1	five_prime_UTR

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
CmaCh05G004520.1.CDS.1	CmaCh05G004520.1.CDS.1	CDS
CmaCh05G004520.1.CDS.2	CmaCh05G004520.1.CDS.2	CDS

The following three_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
CmaCh05G004520.1.three_prime_UTR.1	CmaCh05G004520.1.three_prime_UTR.1	three_prime_UTR

InterPro

Analysis Name: InterPro Annotations of Cucurbita maxima
Date Performed: 2017-05-20


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR000504	RNA recognition motif domain	PFAM	PF00076	RRM_1	coord: 10..79 score: 3.8
IPR000504	RNA recognition motif domain	SMART	SM00360	rrm1_1	coord: 9..82 score: 3.2
IPR000504	RNA recognition motif domain	PROFILE	PS50102	RRM	coord: 8..86 score: 18
IPR012677	Nucleotide-binding alpha-beta plait domain	GENE3D	G3DSA:3.30.70.330		coord: 6..94 score: 3.7
IPR012677	Nucleotide-binding alpha-beta plait domain	unknown	SSF54928	RNA-binding domain, RBD	coord: 6..95 score: 1.63
IPR024936	Cyclophilin-type peptidyl-prolyl cis-trans isomerase	PANTHER	PTHR11071	PEPTIDYL-PROLYL CIS-TRANS ISOMERASE	coord: 3..74 score: 1.8
None	No IPR available	unknown	Coil	Coil	coord: 111..138 scor
None	No IPR available	PANTHER	PTHR11071:SF274	SUBFAMILY NOT NAMED	coord: 3..74 score: 1.8