CmaCh05G003990.1 (mRNA) Cucurbita maxima (Rimu) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CmaCh05G003990.1
Type	mRNA
Organism	Cucurbita maxima (Cucurbita maxima (Rimu))
Description	Plant protein of unknown function (DUF247)
Location	Cma_Chr05 : 1737415 .. 1737751 (+)
Sequence length	306

Genome Viewer

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGATATAAGCTTCACAATTGGAGTTCTTGAAATTCCACCTTTGTATAGAGATGATTACTTTAAAACCATGATGCGAAATATGTATCCAATACGTGTCATTATTGGATTATTTGATATGCACAGAGAAAGACGTGAATTTCCTTGTGAGAGTCGGGATCATAATCAATGATATTGGAGGGAATGATAAAGAAGTTTCAGAATTGTTCAACAATCTCTGTAAATTTGTCATAGTCTCAGATTATTACCACTTCAACGATATCAACAAAGCTTTACGTAGATATTGCAATAGACTATGGAATAAGGCAAAAGCTTCACTCAAGCATAATTATTTGTAA

mRNA sequence

ATGGATATAAGCTTCACAATTGGAGTTCTTGAAATTCCACCTTTGTATAGAGATGATTACTTTAAAACCATGATGCGAAATATGTATCCAATACAGAAAGACGTGAATTTCCTTGTGAGAGTCGGGATCATAATCAATGATATTGGAGGGAATGATAAAGAAGTTTCAGAATTGTTCAACAATCTCTGTAAATTTGTCATAGTCTCAGATTATTACCACTTCAACGATATCAACAAAGCTTTACGTAGATATTGCAATAGACTATGGAATAAGGCAAAAGCTTCACTCAAGCATAATTATTTGTAA

Coding sequence (CDS)

ATGGATATAAGCTTCACAATTGGAGTTCTTGAAATTCCACCTTTGTATAGAGATGATTACTTTAAAACCATGATGCGAAATATGTATCCAATACAGAAAGACGTGAATTTCCTTGTGAGAGTCGGGATCATAATCAATGATATTGGAGGGAATGATAAAGAAGTTTCAGAATTGTTCAACAATCTCTGTAAATTTGTCATAGTCTCAGATTATTACCACTTCAACGATATCAACAAAGCTTTACGTAGATATTGCAATAGACTATGGAATAAGGCAAAAGCTTCACTCAAGCATAATTATTTGTAA

Protein sequence

MDISFTIGVLEIPPLYRDDYFKTMMRNMYPIQKDVNFLVRVGIIINDIGGNDKEVSELFNNLCKFVIVSDYYHFNDINKALRRYCNRLWNKAKASLKHNYL

Homology

[Close]

BLAST of CmaCh05G003990.1 vs. TrEMBL
Match: A0A0A0LM96_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_2G380080 PE=4 SV=1)

HSP 1 Score: 122.1 bits (305), Expect = 3.9e-25
Identity = 66/126 (52.38%), Postives = 85/126 (67.46%), Query Frame = 1


Query: 1   MDISFTIGVLEIPPLYRDDYFKTMMRNM-----YPIQ--------------------KDV 60
           M+I F  G+LEIPPL+ DDYF+ MMRN+     +P++                    KDV
Sbjct: 287 MNIRFENGILEIPPLHIDDYFEPMMRNLLAFEHFPVEVNNTYVIPYVTFMDYLISTEKDV 346

Query: 61  NFLVRVGIIINDIGGNDKEVSELFNNLCKFVIVS-DYYHFNDINKALRRYCNRLWNKAKA 101
           N LV+  IIINDIGG+D+EVS+LFNNLCKFV  S +  +FN+I++ LR +C+R WNKAKA
Sbjct: 347 NLLVKEKIIINDIGGSDREVSQLFNNLCKFVSSSPNDNYFNNISEGLREHCDRWWNKAKA 406

[Close]

BLAST of CmaCh05G003990.1 vs. TrEMBL
Match: A0A0A0LLX1_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_2G380590 PE=4 SV=1)

HSP 1 Score: 120.9 bits (302), Expect = 8.7e-25
Identity = 65/126 (51.59%), Postives = 85/126 (67.46%), Query Frame = 1


Query: 1   MDISFTIGVLEIPPLYRDDYFKTMMRNM-----YPIQ--------------------KDV 60
           M+I F  G+LEIPPL+ DDYF+ MMR++     +PI+                     DV
Sbjct: 316 MNIKFKNGILEIPPLHIDDYFEPMMRDLLAFEHFPIEVQNTYVIPYITFMDYLISTENDV 375

Query: 61  NFLVRVGIIINDIGGNDKEVSELFNNLCKFVIVS-DYYHFNDINKALRRYCNRLWNKAKA 101
           N LV+  IIINDIGG+D+EVS+LFNNLCKFV  S +  +FNDI++ LR++C+R WNKAKA
Sbjct: 376 NLLVKEKIIINDIGGSDREVSQLFNNLCKFVSSSFNNIYFNDISERLRKHCDRWWNKAKA 435

[Close]

BLAST of CmaCh05G003990.1 vs. TrEMBL
Match: A0A0A0LSF4_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_2G380060 PE=4 SV=1)

HSP 1 Score: 102.8 bits (255), Expect = 2.5e-19
Identity = 63/126 (50.00%), Postives = 75/126 (59.52%), Query Frame = 1


Query: 1   MDISFTIGVLEIPPLYRDDYFKTMMRN-------------MYPIQ------------KDV 60
           M+I+FT GVLEIPPL   D F+ + RN             MY  Q            KDV
Sbjct: 354 MNITFTNGVLEIPPLNICDEFELLFRNLVAFEQFQAGNGKMYATQYIIFMDNLINTKKDV 413

Query: 61  NFLVRVGIIINDIGGNDKEVSELFNNLCKFVIVSDYY-HFNDINKALRRYCNRLWNKAKA 101
             LV  G+IIN+IGG+ KEVS+LFN L KF+  S     FNDI+K L ++CNR WNKAKA
Sbjct: 414 RLLVNSGVIINNIGGSYKEVSKLFNKLGKFISGSPTSSEFNDISKDLHKHCNRRWNKAKA 473

[Close]

BLAST of CmaCh05G003990.1 vs. TrEMBL
Match: A0A0A0LQ57_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_2G380610 PE=4 SV=1)

HSP 1 Score: 100.5 bits (249), Expect = 1.2e-18
Identity = 58/125 (46.40%), Postives = 76/125 (60.80%), Query Frame = 1


Query: 1   MDISFTIGVLEIPPLYRDDYFKTMMRNM-------------YPIQ------------KDV 60
           M+ISF  GVLEIPP+  +  F+ ++RN+             Y IQ            KD+
Sbjct: 317 MNISFKNGVLEIPPIVIEGTFEVLIRNVLAFEIFPAGNQKKYAIQYVTFLDDLISTEKDL 376

Query: 61  NFLVRVGIIINDIGGNDKEVSELFNNLCKFVIVSDYYHFNDINKALRRYCNRLWNKAKAS 101
             LV+ G+IIND GG+DKEVSELFN+L K V      +F+D +KALR +C+  WNKAKAS
Sbjct: 377 CLLVKAGVIINDTGGSDKEVSELFNSLTKLVTTPLPSYFDDTSKALRVHCDGSWNKAKAS 436

[Close]

BLAST of CmaCh05G003990.1 vs. TrEMBL
Match: A0A0A0LPJ5_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_2G380630 PE=4 SV=1)

HSP 1 Score: 99.0 bits (245), Expect = 3.5e-18
Identity = 54/125 (43.20%), Postives = 76/125 (60.80%), Query Frame = 1


Query: 1   MDISFTIGVLEIPPLYRDDYFKTMMRNM-----YPI--------------------QKDV 60
           M+ISF  GVL+IP L  D  F+ ++RN+     YP                     ++D 
Sbjct: 237 MNISFENGVLKIPCLEIDCTFEIVIRNVIAFDQYPAGNKNAYAIHYVLFLDDLINTEQDA 296

Query: 61  NFLVRVGIIINDIGGNDKEVSELFNNLCKFVIVSDYYHFNDINKALRRYCNRLWNKAKAS 101
           + L  VG+IIN +GG+DK+++E+FNNL K+V      HF+DI+K LR++CN+ WNKA AS
Sbjct: 297 HLLANVGVIINTLGGSDKDITEMFNNLSKYVTFPVCSHFDDISKDLRKHCNKRWNKAIAS 356

[Close]

BLAST of CmaCh05G003990.1 vs. TAIR10
Match: AT4G31980.1 (AT4G31980.1 unknown protein)

HSP 1 Score: 67.8 bits (164), Expect = 4.4e-12
Identity = 39/123 (31.71%), Postives = 66/123 (53.66%), Query Frame = 1


Query: 1   MDISFTIGVLEIPPLYRDDYFKTMMRNMYPIQK-----------------------DVNF 60
           +DISF  GVL+IP +  DD  +++ +N+   ++                       D + 
Sbjct: 528 LDISFADGVLKIPTIVVDDLTESLYKNIIGFEQCRCSNKNFLDYIMLLGCFIKSPTDADL 587

Query: 61  LVRVGIIINDIGGNDKEVSELFNNLCKFVIVSDYYHFNDINKALRRYCNRLWNKAKASLK 101
           L+  GII+N +G N  +VS LFN++ K VI    ++F+ +++ L+ YCN  WN+ KA L+
Sbjct: 588 LIHSGIIVNYLG-NSVDVSNLFNSISKEVIYDRRFYFSMLSENLQAYCNTPWNRWKAILR 647

[Close]

BLAST of CmaCh05G003990.1 vs. TAIR10
Match: AT3G50170.1 (AT3G50170.1 Plant protein of unknown function (DUF247))

HSP 1 Score: 57.0 bits (136), Expect = 7.8e-09
Identity = 40/124 (32.26%), Postives = 59/124 (47.58%), Query Frame = 1


Query: 2   DISFTIGVLEIPPLYRDDYFKTMMRNMYPIQK------------------------DVNF 61
           DI F  G LEIP L   D  K++  N+   ++                        DV++
Sbjct: 381 DIEFKNGYLEIPKLLIHDGTKSLFSNLIAFEQCHIESSNHITSYIIFMDNLINSSEDVSY 440

Query: 62  LVRVGIIINDIGGNDKEVSELFNNLCKFVIVSDY-YHFNDINKALRRYCNRLWNKAKASL 101
           L   GII + +G +D EV++LFN LC+ V+      H + ++  + RY NR WN  KA+L
Sbjct: 441 LHYCGIIEHWLG-SDSEVADLFNRLCQEVVFDPKDSHLSRLSGDVNRYYNRKWNVLKATL 500

[Close]

BLAST of CmaCh05G003990.1 vs. TAIR10
Match: AT3G50140.1 (AT3G50140.1 Plant protein of unknown function (DUF247))

HSP 1 Score: 55.5 bits (132), Expect = 2.3e-08
Identity = 38/124 (30.65%), Postives = 59/124 (47.58%), Query Frame = 1


Query: 2   DISFTIGVLEIPPLYRDDYFKTMMRNMYPIQK------------------------DVNF 61
           DI F  G LEIP L   D  K++  N+   ++                        D+ +
Sbjct: 381 DIQFKNGCLEIPKLLIHDGTKSLFSNLIAYEQCHIDSTNDITSYIIFMDNLIDSAEDIRY 440

Query: 62  LVRVGIIINDIGGNDKEVSELFNNLCKFVIVS-DYYHFNDINKALRRYCNRLWNKAKASL 101
           L    II + +G ND EV+++FN LC+ V    +  + ++++  + RY NR WN  KA+L
Sbjct: 441 LHYYDIIEHWLG-NDSEVADVFNRLCQEVAFDLENTYLSELSNKVDRYYNRKWNVLKATL 500

[Close]

BLAST of CmaCh05G003990.1 vs. TAIR10
Match: AT3G50150.1 (AT3G50150.1 Plant protein of unknown function (DUF247))

HSP 1 Score: 54.7 bits (130), Expect = 3.9e-08
Identity = 40/125 (32.00%), Postives = 61/125 (48.80%), Query Frame = 1


Query: 2   DISFTIGVLEIPPLYRDDYFKTMMRNMYPIQK------------------------DVNF 61
           DI F  G L+IP L   D  K++  N+   ++                        DV++
Sbjct: 351 DIEFKNGYLKIPKLLIHDGTKSLFSNLIAFEQCHTQSSNNITSYIIFMDNLINSSQDVSY 410

Query: 62  LVRVGIIINDIGGNDKEVSELFNNLCKFVIV--SDYYHFNDINKALRRYCNRLWNKAKAS 101
           L   GII + +G +D EV++LFN LCK VI    D Y  + +++ + RY +R WN  KA+
Sbjct: 411 LHHDGIIEHWLG-SDSEVADLFNRLCKEVIFDPKDGY-LSQLSREVNRYYSRKWNSLKAT 470

[Close]

BLAST of CmaCh05G003990.1 vs. TAIR10
Match: AT3G50120.1 (AT3G50120.1 Plant protein of unknown function (DUF247))

HSP 1 Score: 51.2 bits (121), Expect = 4.3e-07
Identity = 37/124 (29.84%), Postives = 61/124 (49.19%), Query Frame = 1


Query: 2   DISFTIGVLEIPPLYRDDYFKTM------------------------MRNMYPIQKDVNF 61
           D+ F  G LEIP L   D  K++                        M N+    +DV++
Sbjct: 373 DMQFKNGYLEIPRLLIHDGTKSLFLNLIAFEQCHIDSSNDITSYIIFMDNLIDSHEDVSY 432

Query: 62  LVRVGIIINDIGGNDKEVSELFNNLCKFVIV-SDYYHFNDINKALRRYCNRLWNKAKASL 101
           L   GII + +G +D EV++LFN LC+ V+  ++  + + ++  + RY +  WN  +A+L
Sbjct: 433 LHYCGIIEHWLG-SDSEVADLFNRLCQEVVFDTEDSYLSRLSIEVNRYYDHKWNAWRATL 492

[Close]

BLAST of CmaCh05G003990.1 vs. NCBI nr
Match: gi|659088838|ref|XP_008445188.1| (PREDICTED: UPF0481 protein At3g47200-like [Cucumis melo])

HSP 1 Score: 123.2 bits (308), Expect = 2.5e-25
Identity = 67/126 (53.17%), Postives = 85/126 (67.46%), Query Frame = 1


Query: 1   MDISFTIGVLEIPPLYRDDYFKTMMRNM-----YPIQ--------------------KDV 60
           ++I F  G+LEIPPL+ DDYF+ MMRN+     +P++                    KDV
Sbjct: 323 LNIRFENGILEIPPLHIDDYFEPMMRNLLAFEHFPVEVKNTYVIPYLTFMDYLIITEKDV 382

Query: 61  NFLVRVGIIINDIGGNDKEVSELFNNLCKFVIVS-DYYHFNDINKALRRYCNRLWNKAKA 101
           N LV+  IIINDIGG+D+EVS+LFNNLCKFV  S +  +FND +KALR +C+R WNKAKA
Sbjct: 383 NLLVKEKIIINDIGGSDREVSQLFNNLCKFVSSSPNDNYFNDTSKALRDHCDRRWNKAKA 442

[Close]

BLAST of CmaCh05G003990.1 vs. NCBI nr
Match: gi|700207809|gb|KGN62928.1| (hypothetical protein Csa_2G380080 [Cucumis sativus])

HSP 1 Score: 122.1 bits (305), Expect = 5.6e-25
Identity = 66/126 (52.38%), Postives = 85/126 (67.46%), Query Frame = 1


Query: 1   MDISFTIGVLEIPPLYRDDYFKTMMRNM-----YPIQ--------------------KDV 60
           M+I F  G+LEIPPL+ DDYF+ MMRN+     +P++                    KDV
Sbjct: 287 MNIRFENGILEIPPLHIDDYFEPMMRNLLAFEHFPVEVNNTYVIPYVTFMDYLISTEKDV 346

Query: 61  NFLVRVGIIINDIGGNDKEVSELFNNLCKFVIVS-DYYHFNDINKALRRYCNRLWNKAKA 101
           N LV+  IIINDIGG+D+EVS+LFNNLCKFV  S +  +FN+I++ LR +C+R WNKAKA
Sbjct: 347 NLLVKEKIIINDIGGSDREVSQLFNNLCKFVSSSPNDNYFNNISEGLREHCDRWWNKAKA 406

[Close]

BLAST of CmaCh05G003990.1 vs. NCBI nr
Match: gi|778674379|ref|XP_011650197.1| (PREDICTED: UPF0481 protein At3g47200-like [Cucumis sativus])

HSP 1 Score: 120.9 bits (302), Expect = 1.2e-24
Identity = 65/126 (51.59%), Postives = 85/126 (67.46%), Query Frame = 1


Query: 1   MDISFTIGVLEIPPLYRDDYFKTMMRNM-----YPIQ--------------------KDV 60
           M+I F  G+LEIPPL+ DDYF+ MMR++     +PI+                     DV
Sbjct: 316 MNIKFKNGILEIPPLHIDDYFEPMMRDLLAFEHFPIEVQNTYVIPYITFMDYLISTENDV 375

Query: 61  NFLVRVGIIINDIGGNDKEVSELFNNLCKFVIVS-DYYHFNDINKALRRYCNRLWNKAKA 101
           N LV+  IIINDIGG+D+EVS+LFNNLCKFV  S +  +FNDI++ LR++C+R WNKAKA
Sbjct: 376 NLLVKEKIIINDIGGSDREVSQLFNNLCKFVSSSFNNIYFNDISERLRKHCDRWWNKAKA 435

[Close]

BLAST of CmaCh05G003990.1 vs. NCBI nr
Match: gi|659088834|ref|XP_008445186.1| (PREDICTED: putative UPF0481 protein At3g02645 [Cucumis melo])

HSP 1 Score: 107.5 bits (267), Expect = 1.4e-20
Identity = 63/130 (48.46%), Postives = 79/130 (60.77%), Query Frame = 1


Query: 2   DISFTIGVLEIPPLYRDDYFKTMMRNMYP--------------------------IQKDV 61
           +I+F  GVLEIPP+  DDYF+T+ RN+                            I+KDV
Sbjct: 395 NITFKNGVLEIPPIVIDDYFETITRNLIAYEHLDAKNYQEMNVISYILFMDYLISIEKDV 454

Query: 62  NFLVRVGIIINDIGGNDKEVSELFNNLCKFV----IVSDYYH-FNDINKALRRYCNRLWN 101
           + L + GII+NDIGG+DKEVSELFNNL KFV     +S Y+  FN I+KAL  + +R WN
Sbjct: 455 SLLEKAGIIVNDIGGSDKEVSELFNNLSKFVNRSGDISAYFEKFNGISKALCEHRDRRWN 514

[Close]

BLAST of CmaCh05G003990.1 vs. NCBI nr
Match: gi|659089575|ref|XP_008445584.1| (PREDICTED: UPF0481 protein At3g47200-like [Cucumis melo])

HSP 1 Score: 105.5 bits (262), Expect = 5.4e-20
Identity = 65/125 (52.00%), Postives = 76/125 (60.80%), Query Frame = 1


Query: 2   DISFTIGVLEIPPLYRDDYFKTMMRN-------------MYPIQ------------KDVN 61
           +ISF  GVL+IP L+  D F+ M RN             MY  Q            KDV 
Sbjct: 387 NISFKNGVLKIPHLHIYDEFELMFRNLIAFEQFRAGNQNMYATQYILFIDDLISTEKDVR 446

Query: 62  FLVRVGIIINDIGGNDKEVSELFNNLCKFV-IVSDYYHFNDINKALRRYCNRLWNKAKAS 101
            LV  G+IIN+IGG+DKEVSELFNNL KFV    + Y FN I+KALR++CN  WNKAKAS
Sbjct: 447 LLVNSGVIINNIGGSDKEVSELFNNLGKFVNHCRNPYMFNHISKALRKHCNGRWNKAKAS 506

The following BLAST results are available for this feature:

BLAST of CmaCh05G003990.1 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of CmaCh05G003990.1 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0LM96_CUCSA	3.9e-25	52.38	Uncharacterized protein OS=Cucumis sativus GN=Csa_2G380080 PE=4 SV=1	[more]
A0A0A0LLX1_CUCSA	8.7e-25	51.59	Uncharacterized protein OS=Cucumis sativus GN=Csa_2G380590 PE=4 SV=1	[more]
A0A0A0LSF4_CUCSA	2.5e-19	50.00	Uncharacterized protein OS=Cucumis sativus GN=Csa_2G380060 PE=4 SV=1	[more]
A0A0A0LQ57_CUCSA	1.2e-18	46.40	Uncharacterized protein OS=Cucumis sativus GN=Csa_2G380610 PE=4 SV=1	[more]
A0A0A0LPJ5_CUCSA	3.5e-18	43.20	Uncharacterized protein OS=Cucumis sativus GN=Csa_2G380630 PE=4 SV=1	[more]

BLAST of CmaCh05G003990.1 vs. TAIR10


Match Name	E-value	Identity	Description
AT4G31980.1	4.4e-12	31.71	unknown protein	[more]
AT3G50170.1	7.8e-09	32.26	Plant protein of unknown function (DUF247)	[more]
AT3G50140.1	2.3e-08	30.65	Plant protein of unknown function (DUF247)	[more]
AT3G50150.1	3.9e-08	32.00	Plant protein of unknown function (DUF247)	[more]
AT3G50120.1	4.3e-07	29.84	Plant protein of unknown function (DUF247)	[more]

BLAST of CmaCh05G003990.1 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|659088838\|ref\|XP_008445188.1\|	2.5e-25	53.17	PREDICTED: UPF0481 protein At3g47200-like [Cucumis melo]	[more]
gi\|700207809\|gb\|KGN62928.1\|	5.6e-25	52.38	hypothetical protein Csa_2G380080 [Cucumis sativus]	[more]
gi\|778674379\|ref\|XP_011650197.1\|	1.2e-24	51.59	PREDICTED: UPF0481 protein At3g47200-like [Cucumis sativus]	[more]
gi\|659088834\|ref\|XP_008445186.1\|	1.4e-20	48.46	PREDICTED: putative UPF0481 protein At3g02645 [Cucumis melo]	[more]
gi\|659089575\|ref\|XP_008445584.1\|	5.4e-20	52.00	PREDICTED: UPF0481 protein At3g47200-like [Cucumis melo]	[more]

Annotated Terms

The following terms have been associated with this mRNA:

Vocabulary: **INTERPRO**
Term	Definition
IPR004158	DUF247_pln

GO Annotation

GO Assignments

This mRNA is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
CmaCh05G003990	CmaCh05G003990	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
CmaCh05G003990.1	CmaCh05G003990.1-protein	polypeptide

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
CmaCh05G003990.1.exon.1	CmaCh05G003990.1.exon.1	exon
CmaCh05G003990.1.exon.2	CmaCh05G003990.1.exon.2	exon

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
CmaCh05G003990.1.CDS.1	CmaCh05G003990.1.CDS.1	CDS
CmaCh05G003990.1.CDS.2	CmaCh05G003990.1.CDS.2	CDS

InterPro

Analysis Name: InterPro Annotations of Cucurbita maxima
Date Performed: 2017-05-20


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR004158	Protein of unknown function DUF247, plant	PFAM	PF03140	DUF247	coord: 32..101 score: 6.8
None	No IPR available	PANTHER	PTHR31549	FAMILY NOT NAMED	coord: 1..101 score: 4.7