CmaCh05G002650.1 (mRNA) Cucurbita maxima (Rimu) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CmaCh05G002650.1
Type	mRNA
Organism	Cucurbita maxima (Cucurbita maxima (Rimu))
Description	NAD(P)-binding Rossmann-fold superfamily protein, putative
Location	Cma_Chr05 : 1122713 .. 1127491 (-)
Sequence length	339

Genome Viewer

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSexon

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGACGGTTGGAGTAAATAAAAATAATAATATCAAAATTTTTTTAATGAAAATATTATTGTCAGGATTAAATTATAAAAATTATTATTAGTATTGATCTAATTTGATTAACAAAAATAAAATGAATAAATACATAAATCAAAATAAAAAAAAATTAAGTTACCTAATAAATTTAAATTTTTTAATTTAATTATGCTAGAAAAATTTTGAATACAAAATTTAAATTTAAAAGATGGGATGAATTTTGTGGATAGTTTTGTAGATCATATTGGAAAGATCAAGAGCAAGCAAGCGAGATTCACTTGCATGCATTATGTTGGAATCATCCAGCAATTTCCCTGGAAGGCGGCGGAAATTCTGAGAATTTCGTCGATTTTCACTGCCTAGCGGCGACGAAGAGTTCAAATCCAGAATCGCTCGTTTATTCTAGGGCTGGGTTTCGTTGGAGAGTTCTTCGCGCCAAGAACTAAAGAACTCAGGTTGGTAAAATCTCTGCATTTCTTAGTGTTTTGTGTTTAATTTCAATTGGAGAATTTGTAGAAATTATCCTTTAATATCTTACGGATTCGGATTATTTGTTGTATTGATTCATGTTGTGTAAAGATCGTTGGCTATTGTGAATTTGAGTTAATGAAATGGGGCTTGATTATTAGGGTTTTGATGCAAATGATACAGAGTAAGCTCCTATATGTGTTTTTTGAGAGATAACGAAATTTGAATATGTGCTATCCTTGCATTACATAGCATTGAAATGAAAATGTTTCTAGTTCATTAGATGGGGTACTAAACGTAAACAAAATCGATATCGAAGTTTGTAAAGCTTGTTCGGATTATGATACTGAAAAAGTTCACTCCATACTTTATGAGCTCGGCTGTAAGCTCATGGCCAATATCTGGATTGTATTGTTTCTTACACGTAATTACGTATATGGATGATTTGATCTGAAAGCATAGAACATTTAGTTGATCTGGTCTTGATAGCTGTTTATAGTTCCTACTAGTATCGATCTGAAAGCATAGAACATCTAGTTGATCCAGTCTTTGATAGCTGTTTATAGTTCCTACTAGTATCTATTAGTAAGCTATTTAAGGCAGGCTCTGTTCCTGGTGCGTAGGGCCGATCCCCGTGTAGGAGGCCCTTCTCACTTAAGTAAAAGCATTTACTTGTCTTGGGGTGGAGGGGTGGACAGCTTTGTTTGCCCCAACTTGGTAAATGGTATTTCCGTGCAACGACATTGTTTGTGCATTTCCTTCTGGAGTCACTCTTAGATTATCACTAAGAAAAAGAGGAAGAGAATAGAATGTTGTTATTTTGGCATGGTTGGAGACGATTGGCTCCCCTCCACTTTATGTTTCTTTTGCAGGAGAGTTTACAACATAGTCGACAACGATCCAGCTCGTCCAGGTCCAAGGGAAGAAGTTTTCTCATATGCGCAGGATCTGGTCAAGAAAAAGTGGCCCGGTAAAGTCGAACCATCGCCGATGCAAGTTGAGGTAAGTGCTGTTATCAATAGGGGTGGAATGGGTGATAAAAGTGTGTAATGTACGTAGGTAAAGTCGAACCATCGCCGATGCAAGTAGAGGTAAGTGCTGTTACCAATAGGGGTGGAATGGGTGATAAAAGTGTGTAATGTACGTATGAAAATGGAGCTCGGAGTGAGTCTTGAGAGCGAGGGATCGAACCATTAATCTTCGGGATAGTAATTAGGGCCGTAATTCATTGATCTATGCACAGATTTGTTTCTTAATTTTCTGTGGCCTTTGTACTTATAAATTTTTGTTTAAGAATGATTTGTTGTAGATTGGATGCATTATCTTGTCCAACTTTCACCCTTCAACGTAAATTCTAGAAAAGTTTAATTAAATGATTATATATAATAAATGCAAGCCCAAGTGACAGCAACGTCAGGATGGCCGAGTGGTCTAAGGCGCCAGACTCAAGTTCTGGTCTTCGAGAGAGGGCGTGGGTTCAAATCCCACTTCTGACAAATTTCTCATTTTAATTTAATCGCTTTGTTTTGCCATTGGGCTCGGCCCATTTGTTAACCAGCCCAAAAAATGGGCTATATGGGCTACAACATAATTTAGATTTGTTTACAAGGCTTCTTTATTTTTTGTTTATAATTATTAATAATATTGGCGTGTTAAATTTATTAAATGAGTATATTACAACATTATGTCATCATTTTTATTATTAGTTTTAATGAAAAAACTAAATAAAAGCATAATTGAAGTTCAAATTAACCTTTTTTTAATTTGAATTATGATAATTAATACTTCCAATTTAGTTGAATTATTAAAAAAAAAAAAACGTTGTTGAAGAATAAATAATATTATAATTCAATGTTAAGAAGAATGTCCAAGTCTAATACTAACAAACACAGTATTTATATAAATAAAAAATACCAAGTTAGAAGTGCAATTAAAGGTTAATTAAATAAAATTAAAAAATTAAAAAGGAAATTGGCTCATGGGGAGATGGAAAAGAGCAACTGTTTTTTATTATTATTATTTTTTTTTTTAATCCTTTTTGTCTGAAAAAAATAACACGACCCTTAATTGCACCAAAAAGCCACCGACCTCCACGGAGCTCAAACGAGTTCCAAAGACAAAAATGCCCCTCTCTCCATTTTCTGACAAATTATGTACTCTTCTAGATTGATTGTTTTTAATATGGTTATATATATATATATATATATATATATATATATATATATATATATATATATATATNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTAATATTCTTCCTTAGAATCCACGTCATTTTAAAAAGATGTTGACGAGTGATCCAATACATTTGAAGAAATATAAAATTTAATCCATTTTTATGAGCTCGATCGGAAGTTGACTTAACGAATGAATTGAATGTTTTTATTTTACATATTGTAAAAAAAAATAATGAAATACAAAATAAATAAAAAAAATTTATTTTTAAGATTATTTTTCCTTGAATTTTTATTAAAGCTTTTAAGAAAATTGAGAACCCAATATTTCTATCCATATCACTAATTTTTTTCGTTCATTTATATAACCCTTTTTCAAACGTGCTGTGTCAATTTGCTAACACCGACAAATTGATGCACTAAAAAAAACATAATAATAATAATAATAATAATAATAATAATAATAATAATAATAATAATAATGAATGTGAAGATTGAGAAGTGGTTGGGAATGGAAAAGGGCAAATTTGAAACCCCAACCAAACATATGCTTATGGTTTGAGTGGGAAGCAAAATGTCACTCTCTTTTAAAATTTTGGGCCAATTATCCAAATTACAAGTCATATTGTTGACTTGTAAATTGCAAAAAAGTACCACTAATATATATATTAAATTCACTTTCTTGCTTTTTTTATTTATTTATTTATAAACCTTATAATTCATATAAGCTACCCGAACCACAACTCTTAATTTAATTACAATAATATAATCAAAATACAATGTTTTGATGCAGGCCACTGGAGTAATATTAGATTGAGACAAATTTTAAATGTTAGATATGATCTTAAAATATCAAAGGTCAAGTCGTACTAAATCGAGACAATGGTAAATACTAGATAAAATCTCAAAATAAAAAAGATCAAGATCGACCAATAAGATGATAGGAGATAAAGCTCATCGTTCAAGAGAGAAACTATTTCATCTCTTTAAAAATCAAAATGATAATTAAATTGCCAACTCAAGAATAATTTGCTATGCCACCAACTTTATTGAAATCATACGCATGCCATTTATTAAGAAATATTGAATGAAGTTACAAATATTAGATCACCGTCCAATTCACATTTTTATATGGAAATATCTTCCATCATTCCCGAGTGATTTTTTTAAAAGGTAATTAGCTAATTCATATAAAAAAACGACAGAAAGGTTCCAACCTCCAATCATGTTTAAAAGGGAATAATAAAAAAAGAATCAAGGAGTAAATTAAGAGTTTATACTTAAAAGAGGAATGAGTTTGATGAGGGTTGCAGAAAGGCCCCCTTTTACAAAAATAATTTCAATTCAGACCACATTTCTGCTCCCCTCAGCACATCTGAATCTGATTAAGATTGTTCCAATTACCCTAGGGAAATCACCAGAAGATCGATCCACATTTTTCCAGCACACAGATCAGATCAAGAAATTTAAGCTTTAG

mRNA sequence

ATGGACGGTTGGAGGCTGGGTTTCGTTGGAGAGTTCTTCGCGCCAAGAACTAAAGAACTCAGGAGAGTTTACAACATAGTCGACAACGATCCAGCTCGTCCAGGTCCAAGGGAAGAAGTTTTCTCATATGCGCAGGATCTGGTCAAGAAAAAGTGGCCCGGTAAAGTCGAACCATCGCCGATGCAAGTTGAGGTAAGTGCTGTTATCAATAGGGGTGGAATGGGTGATAAAACACATCTGAATCTGATTAAGATTGTTCCAATTACCCTAGGGAAATCACCAGAAGATCGATCCACATTTTTCCAGCACACAGATCAGATCAAGAAATTTAAGCTTTAG

Coding sequence (CDS)

ATGGACGGTTGGAGGCTGGGTTTCGTTGGAGAGTTCTTCGCGCCAAGAACTAAAGAACTCAGGAGAGTTTACAACATAGTCGACAACGATCCAGCTCGTCCAGGTCCAAGGGAAGAAGTTTTCTCATATGCGCAGGATCTGGTCAAGAAAAAGTGGCCCGGTAAAGTCGAACCATCGCCGATGCAAGTTGAGGTAAGTGCTGTTATCAATAGGGGTGGAATGGGTGATAAAACACATCTGAATCTGATTAAGATTGTTCCAATTACCCTAGGGAAATCACCAGAAGATCGATCCACATTTTTCCAGCACACAGATCAGATCAAGAAATTTAAGCTTTAG

Protein sequence

MDGWRLGFVGEFFAPRTKELRRVYNIVDNDPARPGPREEVFSYAQDLVKKKWPGKVEPSPMQVEVSAVINRGGMGDKTHLNLIKIVPITLGKSPEDRSTFFQHTDQIKKFKL

Homology

[Close]

BLAST of CmaCh05G002650.1 vs. TrEMBL
Match: A0A0A0LPC5_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_2G362400 PE=4 SV=1)

HSP 1 Score: 72.0 bits (175), Expect = 5.1e-10
Identity = 37/61 (60.66%), Postives = 42/61 (68.85%), Query Frame = 1


Query: 21  RRVYNIVDNDPARPGPREEVFSYAQDLVKKKWPGKVEPSPMQVEVSAVINRGGMGDKTHL 80
           RR YNIVD+DPA   PREEVFSYA+DLV+KKWPGK +     VE S + N  G GDK   
Sbjct: 267 RRFYNIVDDDPA---PREEVFSYARDLVEKKWPGKFDTLSKVVEESDITNGRGRGDKRVC 324

Query: 81  N 82
           N
Sbjct: 327 N 324

[Close]

BLAST of CmaCh05G002650.1 vs. TrEMBL
Match: M5XQ80_PRUPE (Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa008237mg PE=4 SV=1)

HSP 1 Score: 64.7 bits (156), Expect = 8.2e-08
Identity = 32/62 (51.61%), Postives = 45/62 (72.58%), Query Frame = 1


Query: 17  TKELRRVYNIVDNDPARPGPREEVFSYAQDLVKKKWPGKVEPSPMQVEVSAVINRGGM-G 76
           T   RRVYNIVD++PA+   REEVF YA+DLV+KKWPG ++ S  + E S ++ + G+ G
Sbjct: 244 TSSSRRVYNIVDDEPAQ---REEVFEYARDLVEKKWPGWIKHSSEEKESSVIVKKEGLSG 302

Query: 77  DK 78
           +K
Sbjct: 304 EK 302

[Close]

BLAST of CmaCh05G002650.1 vs. TrEMBL
Match: W9S437_9ROSA (Protein yeeZ OS=Morus notabilis GN=L484_021914 PE=4 SV=1)

HSP 1 Score: 63.9 bits (154), Expect = 1.4e-07
Identity = 30/57 (52.63%), Postives = 40/57 (70.18%), Query Frame = 1


Query: 17  TKELRRVYNIVDNDPARPGPREEVFSYAQDLVKKKWPGKVEPSPMQVEVSAVINRGG 74
           T   R+VYNIVD+DPA   PREEVF+YAQ+L++KKWP ++   P Q E  A + + G
Sbjct: 242 TSSPRKVYNIVDDDPA---PREEVFAYAQNLIEKKWPAQITRIPEQEESLATVKKKG 295

[Close]

BLAST of CmaCh05G002650.1 vs. TrEMBL
Match: B9GRJ7_POPTR (Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0002s03290g PE=4 SV=2)

HSP 1 Score: 60.5 bits (145), Expect = 1.5e-06
Identity = 31/67 (46.27%), Postives = 41/67 (61.19%), Query Frame = 1


Query: 17  TKELRRVYNIVDNDPARPGPREEVFSYAQDLVKKKWPGKVEPSPMQVEVSAVINR-GGMG 76
           T   R +YNIVD+DPA   PREEVF+YA+DL+KKKWPG  + S      ++   +    G
Sbjct: 283 TPSSRGIYNIVDDDPA---PREEVFTYAEDLIKKKWPGHTKWSSNSASAASPTKKDNSRG 342

Query: 77  DKTHLNL 83
           DK   N+
Sbjct: 343 DKRVSNM 346

[Close]

BLAST of CmaCh05G002650.1 vs. TAIR10
Match: AT1G19690.1 (AT1G19690.1 NAD(P)-binding Rossmann-fold superfamily protein)

HSP 1 Score: 49.7 bits (117), Expect = 1.4e-06
Identity = 21/38 (55.26%), Postives = 28/38 (73.68%), Query Frame = 1


Query: 23  VYNIVDNDPARPGPREEVFSYAQDLVKKKWPGKVEPSP 61
           +YNIVD+DPA    REEVF YA +L++K+WPG +   P
Sbjct: 266 IYNIVDDDPAA---REEVFEYALELIEKRWPGNITTKP 300

[Close]

BLAST of CmaCh05G002650.1 vs. NCBI nr
Match: gi|778671446|ref|XP_011649638.1| (PREDICTED: uncharacterized protein LOC101213235 isoform X1 [Cucumis sativus])

HSP 1 Score: 72.0 bits (175), Expect = 7.4e-10
Identity = 37/61 (60.66%), Postives = 42/61 (68.85%), Query Frame = 1


Query: 21  RRVYNIVDNDPARPGPREEVFSYAQDLVKKKWPGKVEPSPMQVEVSAVINRGGMGDKTHL 80
           RR YNIVD+DPA   PREEVFSYA+DLV+KKWPGK +     VE S + N  G GDK   
Sbjct: 273 RRFYNIVDDDPA---PREEVFSYARDLVEKKWPGKFDTLSKVVEESDITNGRGRGDKRVC 330

Query: 81  N 82
           N
Sbjct: 333 N 330

[Close]

BLAST of CmaCh05G002650.1 vs. NCBI nr
Match: gi|449469949|ref|XP_004152681.1| (PREDICTED: uncharacterized protein LOC101213235 isoform X2 [Cucumis sativus])

HSP 1 Score: 72.0 bits (175), Expect = 7.4e-10
Identity = 37/61 (60.66%), Postives = 42/61 (68.85%), Query Frame = 1


Query: 21  RRVYNIVDNDPARPGPREEVFSYAQDLVKKKWPGKVEPSPMQVEVSAVINRGGMGDKTHL 80
           RR YNIVD+DPA   PREEVFSYA+DLV+KKWPGK +     VE S + N  G GDK   
Sbjct: 267 RRFYNIVDDDPA---PREEVFSYARDLVEKKWPGKFDTLSKVVEESDITNGRGRGDKRVC 324

Query: 81  N 82
           N
Sbjct: 327 N 324

[Close]

BLAST of CmaCh05G002650.1 vs. NCBI nr
Match: gi|659088003|ref|XP_008444749.1| (PREDICTED: uncharacterized protein LOC103487996 isoform X1 [Cucumis melo])

HSP 1 Score: 69.3 bits (168), Expect = 4.8e-09
Identity = 37/61 (60.66%), Postives = 41/61 (67.21%), Query Frame = 1


Query: 21  RRVYNIVDNDPARPGPREEVFSYAQDLVKKKWPGKVEPSPMQVEVSAVINRGGMGDKTHL 80
           RR YNIVD+DPA   PREEVFSYA+DLV+KKWPGK +     VE S V N    GDK   
Sbjct: 273 RRFYNIVDDDPA---PREEVFSYARDLVEKKWPGKFDTLLKPVEESDVTNGSVRGDKRVC 330

Query: 81  N 82
           N
Sbjct: 333 N 330

[Close]

BLAST of CmaCh05G002650.1 vs. NCBI nr
Match: gi|659088005|ref|XP_008444750.1| (PREDICTED: uncharacterized protein LOC103487996 isoform X2 [Cucumis melo])

HSP 1 Score: 69.3 bits (168), Expect = 4.8e-09
Identity = 37/61 (60.66%), Postives = 41/61 (67.21%), Query Frame = 1


Query: 21  RRVYNIVDNDPARPGPREEVFSYAQDLVKKKWPGKVEPSPMQVEVSAVINRGGMGDKTHL 80
           RR YNIVD+DPA   PREEVFSYA+DLV+KKWPGK +     VE S V N    GDK   
Sbjct: 267 RRFYNIVDDDPA---PREEVFSYARDLVEKKWPGKFDTLLKPVEESDVTNGSVRGDKRVC 324

Query: 81  N 82
           N
Sbjct: 327 N 324

[Close]

BLAST of CmaCh05G002650.1 vs. NCBI nr
Match: gi|645229204|ref|XP_008221355.1| (PREDICTED: uncharacterized protein LOC103321332 [Prunus mume])

HSP 1 Score: 66.2 bits (160), Expect = 4.0e-08
Identity = 33/62 (53.23%), Postives = 44/62 (70.97%), Query Frame = 1


Query: 17  TKELRRVYNIVDNDPARPGPREEVFSYAQDLVKKKWPGKVEPSPMQVEVSAVINRGGM-G 76
           T   RRVYNIVD++PA   PREEVF YA+DLV+KKWPG ++ S  + E S ++   G+ G
Sbjct: 244 TSSSRRVYNIVDDEPA---PREEVFEYARDLVEKKWPGWIKHSSEEKESSVIVKEEGLSG 302

Query: 77  DK 78
           +K
Sbjct: 304 EK 302

The following BLAST results are available for this feature:

BLAST of CmaCh05G002650.1 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of CmaCh05G002650.1 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0LPC5_CUCSA	5.1e-10	60.66	Uncharacterized protein OS=Cucumis sativus GN=Csa_2G362400 PE=4 SV=1	[more]
M5XQ80_PRUPE	8.2e-08	51.61	Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa008237mg PE=4 SV=1	[more]
W9S437_9ROSA	1.4e-07	52.63	Protein yeeZ OS=Morus notabilis GN=L484_021914 PE=4 SV=1	[more]
B9GRJ7_POPTR	1.5e-06	46.27	Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0002s03290g PE=4 SV=2	[more]

BLAST of CmaCh05G002650.1 vs. TAIR10


Match Name	E-value	Identity	Description
AT1G19690.1	1.4e-06	55.26	NAD(P)-binding Rossmann-fold superfamily protein	[more]

BLAST of CmaCh05G002650.1 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|778671446\|ref\|XP_011649638.1\|	7.4e-10	60.66	PREDICTED: uncharacterized protein LOC101213235 isoform X1 [Cucumis sativus]	[more]
gi\|449469949\|ref\|XP_004152681.1\|	7.4e-10	60.66	PREDICTED: uncharacterized protein LOC101213235 isoform X2 [Cucumis sativus]	[more]
gi\|659088003\|ref\|XP_008444749.1\|	4.8e-09	60.66	PREDICTED: uncharacterized protein LOC103487996 isoform X1 [Cucumis melo]	[more]
gi\|659088005\|ref\|XP_008444750.1\|	4.8e-09	60.66	PREDICTED: uncharacterized protein LOC103487996 isoform X2 [Cucumis melo]	[more]
gi\|645229204\|ref\|XP_008221355.1\|	4.0e-08	53.23	PREDICTED: uncharacterized protein LOC103321332 [Prunus mume]	[more]

GO Annotation

GO Assignments

This mRNA is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008152	metabolic process
cellular_component	GO:0009507	chloroplast
molecular_function	GO:0003824	catalytic activity
molecular_function	GO:0050662	coenzyme binding

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
CmaCh05G002650	CmaCh05G002650	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
CmaCh05G002650.1	CmaCh05G002650.1-protein	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
CmaCh05G002650.1.CDS.4	CmaCh05G002650.1.CDS.4	CDS
CmaCh05G002650.1.CDS.3	CmaCh05G002650.1.CDS.3	CDS
CmaCh05G002650.1.CDS.2	CmaCh05G002650.1.CDS.2	CDS
CmaCh05G002650.1.CDS.1	CmaCh05G002650.1.CDS.1	CDS

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
CmaCh05G002650.1.exon.4	CmaCh05G002650.1.exon.4	exon
CmaCh05G002650.1.exon.3	CmaCh05G002650.1.exon.3	exon
CmaCh05G002650.1.exon.2	CmaCh05G002650.1.exon.2	exon
CmaCh05G002650.1.exon.1	CmaCh05G002650.1.exon.1	exon