CmaCh04G022150.1 (mRNA) Cucurbita maxima (Rimu) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CmaCh04G022150.1
Type	mRNA
Organism	Cucurbita maxima (Cucurbita maxima (Rimu))
Description	Sensitivity to red light reduced protein (SRR1), putative
Location	Cma_Chr04 : 15454883 .. 15455629 (-)
Sequence length	747

Genome Viewer

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSexon

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCAGCGTCGGCAAAAACTCTTGCTATTCCGGATCAGTCGAATAATGGCGACTGGACGATTGTTTTACCTCGTCGTGGCAGGCAGAGGAAGAATTTGCCGAAGCTAAGAAAACAAGAAGATCAGCGGACTTGGTCTCCGTCTGATCAGGCCAATGATACAATCAGGGAATCGAAACTGTTGCATAAGATGGAAATCTGTATTAAGAAAGTTGAGATCTCCCAATTTTATCGAACTCTTGTTGTTGAGCTTGAAACGATGCCGGTCTTGGAATCCTTGAATAGGGTTTTGGCCTCGGAGTCGAAGATGGGGATGGTTATCTATGGCGTAGGAAGCATTGAAAATTATGAAAATCCTCGATTGCAGCTCAGTCTTGCTATATTGTTGAAGAGAAAATTTAGTTGGATTGGAAGGTTAGAGGTGTTCGATCCAATTCTTTCTGCAATCGAATGTCGGATTATTGAATCCTTTGGTTGTTCTGTTCTATCAGTAAATGAGCAAGGACGGCGATGTGCGCAGAAGCCAACAATGTTCTTCATGCCCCATTGCGAGGCAGAGCTGTACAACAATCTTTTACAGGAGAATTGGCCGGTGGAGCTGTTGAATCATGTTGTGCTGTTTGGAAATAGCTTTGAGATCTATGAGCAGTTTGTATCTGAATTCAAGAACTCACCCGTTGTTGATTCGGCAAAGTACATCTTGGCCTCTAGAAAATTCTCACGCGAGATCAAAATCAAGACACTTTAA

mRNA sequence

ATGGCAGCGTCGGCAAAAACTCTTGCTATTCCGGATCAGTCGAATAATGGCGACTGGACGATTGTTTTACCTCGTCGTGGCAGGCAGAGGAAGAATTTGCCGAAGCTAAGAAAACAAGAAGATCAGCGGACTTGGTCTCCGTCTGATCAGGCCAATGATACAATCAGGGAATCGAAACTGTTGCATAAGATGGAAATCTGTATTAAGAAAGTTGAGATCTCCCAATTTTATCGAACTCTTGTTGTTGAGCTTGAAACGATGCCGGTCTTGGAATCCTTGAATAGGGTTTTGGCCTCGGAGTCGAAGATGGGGATGGTTATCTATGGCGTAGGAAGCATTGAAAATTATGAAAATCCTCGATTGCAGCTCAGTCTTGCTATATTGTTGAAGAGAAAATTTAGTTGGATTGGAAGGTTAGAGGTGTTCGATCCAATTCTTTCTGCAATCGAATGTCGGATTATTGAATCCTTTGGTTGTTCTGTTCTATCAGTAAATGAGCAAGGACGGCGATGTGCGCAGAAGCCAACAATGTTCTTCATGCCCCATTGCGAGGCAGAGCTGTACAACAATCTTTTACAGGAGAATTGGCCGGTGGAGCTGTTGAATCATGTTGTGCTGTTTGGAAATAGCTTTGAGATCTATGAGCAGTTTGTATCTGAATTCAAGAACTCACCCGTTGTTGATTCGGCAAAGTACATCTTGGCCTCTAGAAAATTCTCACGCGAGATCAAAATCAAGACACTTTAA

Coding sequence (CDS)

ATGGCAGCGTCGGCAAAAACTCTTGCTATTCCGGATCAGTCGAATAATGGCGACTGGACGATTGTTTTACCTCGTCGTGGCAGGCAGAGGAAGAATTTGCCGAAGCTAAGAAAACAAGAAGATCAGCGGACTTGGTCTCCGTCTGATCAGGCCAATGATACAATCAGGGAATCGAAACTGTTGCATAAGATGGAAATCTGTATTAAGAAAGTTGAGATCTCCCAATTTTATCGAACTCTTGTTGTTGAGCTTGAAACGATGCCGGTCTTGGAATCCTTGAATAGGGTTTTGGCCTCGGAGTCGAAGATGGGGATGGTTATCTATGGCGTAGGAAGCATTGAAAATTATGAAAATCCTCGATTGCAGCTCAGTCTTGCTATATTGTTGAAGAGAAAATTTAGTTGGATTGGAAGGTTAGAGGTGTTCGATCCAATTCTTTCTGCAATCGAATGTCGGATTATTGAATCCTTTGGTTGTTCTGTTCTATCAGTAAATGAGCAAGGACGGCGATGTGCGCAGAAGCCAACAATGTTCTTCATGCCCCATTGCGAGGCAGAGCTGTACAACAATCTTTTACAGGAGAATTGGCCGGTGGAGCTGTTGAATCATGTTGTGCTGTTTGGAAATAGCTTTGAGATCTATGAGCAGTTTGTATCTGAATTCAAGAACTCACCCGTTGTTGATTCGGCAAAGTACATCTTGGCCTCTAGAAAATTCTCACGCGAGATCAAAATCAAGACACTTTAA

Protein sequence

MAASAKTLAIPDQSNNGDWTIVLPRRGRQRKNLPKLRKQEDQRTWSPSDQANDTIRESKLLHKMEICIKKVEISQFYRTLVVELETMPVLESLNRVLASESKMGMVIYGVGSIENYENPRLQLSLAILLKRKFSWIGRLEVFDPILSAIECRIIESFGCSVLSVNEQGRRCAQKPTMFFMPHCEAELYNNLLQENWPVELLNHVVLFGNSFEIYEQFVSEFKNSPVVDSAKYILASRKFSREIKIKTL

Homology

[Close]

BLAST of CmaCh04G022150.1 vs. Swiss-Prot
Match: SRR1_ARATH (Protein SENSITIVITY TO RED LIGHT REDUCED 1 OS=Arabidopsis thaliana GN=SRR1 PE=2 SV=2)

HSP 1 Score: 238.4 bits (607), Expect = 8.2e-62
Identity = 119/242 (49.17%), Postives = 175/242 (72.31%), Query Frame = 1


Query: 10  IPDQSNNGDWTIVLP---RRGRQRKNLPKLRKQEDQRTWSPSDQANDTIRESKLLHKMEI 69
           + + S++G+W +VLP   R+GR+RK  PK + +E+++ W   D   D  R+++L  KMEI
Sbjct: 5   VKNSSSDGEWKVVLPSKGRQGRRRKPKPKGQAEEEEQPWKSDDLEIDPQRQARLKQKMEI 64

Query: 70  CIKKVEISQFYRTLVVELETMPVLESLNRVLASESKMGMVIYGVGSIENYENPRLQLSLA 129
            +KK+E S FY   + +L++  V   +  VL SE+++ MV+YG+GSIE+YE+PR QLS+A
Sbjct: 65  SLKKIESSSFYTAFLEQLKSPEVSNQIRLVLGSETQLQMVMYGIGSIESYESPRFQLSIA 124

Query: 130 ILLKRKFSWIG-RLEVFDPILSAIECRIIESFGCSVLSVNEQGRRCAQKPTMFFMPHCEA 189
           IL+KR+F W+G  +EVFDP+LSA E   +ES GCSVLSVNEQ RR A KPT+FFMPHCEA
Sbjct: 125 ILMKREFDWVGDNIEVFDPVLSATESSYLESLGCSVLSVNEQARREALKPTLFFMPHCEA 184

Query: 190 ELYNNLLQENWPVELLNHVVLFGNSFEIYEQFVSEFKNSPVVDSAKYILASRKFSREIKI 248
            LY+NLLQ NW ++ L+ + LFGNSF++YE+ VS   ++ V+ + K I+A+++ + E  I
Sbjct: 185 NLYSNLLQANWRMDRLSKIALFGNSFQMYEEQVS--FDAEVICATKRIIAAQRVTSEFAI 244

[Close]

BLAST of CmaCh04G022150.1 vs. Swiss-Prot
Match: SRR1L_MOUSE (SRR1-like protein OS=Mus musculus GN=Srrd PE=2 SV=4)

HSP 1 Score: 94.4 bits (233), Expect = 1.9e-18
Identity = 72/223 (32.29%), Postives = 113/223 (50.67%), Query Frame = 1


Query: 19  WTIVLPRRGRQRKNLPKLRKQEDQRTWSPSD--QANDTIRESKL-LHKMEICIKKVE-IS 78
           W+ V PRR R+R    + R  E  R    +D       +RE++  L   + C   +E I+
Sbjct: 9   WSAVAPRR-RKRAAGRRPRPGEGPRAEPEADGEAVLRRLREAEEDLRISDFCSSALETIT 68

Query: 79  QFYRTLVVELETMPVLESLNRV--------------LASESKMGMVIYGVGSIENYENPR 138
           +  R  + +L+  P+ E+L R+               +S S +  V YG+G+  +    R
Sbjct: 69  ECLRKQLEQLQ--PLTEALGRLHLGSSLPSASQEPLASSASHVKCVCYGLGTFASCPTAR 128

Query: 139 LQLSLAIL------LKRKFSWIGRLEVFDPILSAIECRIIESFGCSVLSVNEQGRRCAQ- 198
           +QL+  +L      + R   W     V+DP+ S  E  ++ S G +VLS NE+G+R  Q 
Sbjct: 129 IQLAFMLLFLEKCQVPRSHCW-----VYDPLFSQTEVSVLTSLGVTVLSENEEGKRSVQG 188

Query: 199 KPTMFFMPHCEAELYNNLLQENWPVELLNHVVLFGNSFEIYEQ 217
           +PT+F+MPHC   LYNNLL  NW  + L+ V++ GNSF   E+
Sbjct: 189 QPTVFYMPHCGTALYNNLLWSNWSADALSRVLIIGNSFRGLEE 223

[Close]

BLAST of CmaCh04G022150.1 vs. Swiss-Prot
Match: SRR1L_HUMAN (SRR1-like protein OS=Homo sapiens GN=SRRD PE=2 SV=1)

HSP 1 Score: 87.4 bits (215), Expect = 2.4e-16
Identity = 47/114 (41.23%), Postives = 70/114 (61.40%), Query Frame = 1


Query: 106 VIYGVGSIENYENPRLQLSLAILLKRKFSWIGRLE--VFDPILSAIECRIIESFGCSVLS 165
           V YG+G+       R QL+  +LL  K   I R    V+DP+ S +E  ++ + G +VLS
Sbjct: 142 VCYGIGNFATCIVARNQLTFLLLLLEKCQ-IPRSHCWVYDPLFSQLEIEVLNTLGVTVLS 201

Query: 166 VNEQGRRCAQ-KPTMFFMPHCEAELYNNLLQENWPVELLNHVVLFGNSFEIYEQ 217
            NE+G+R  + +PT+F+M HC   LYNNLL  NW V+ L+ +V+ GNSF+  E+
Sbjct: 202 ENEEGKRSIRGEPTIFYMLHCGTALYNNLLWSNWSVDALSKMVIIGNSFKGLEE 254

[Close]

BLAST of CmaCh04G022150.1 vs. TrEMBL
Match: A0A0A0KRU2_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_5G457240 PE=4 SV=1)

HSP 1 Score: 436.4 bits (1121), Expect = 2.3e-119
Identity = 215/248 (86.69%), Postives = 233/248 (93.95%), Query Frame = 1


Query: 1   MAASAKTLAIPDQSNNGDWTIVLPRRGRQRKNLPKLRKQEDQRTWSPSDQANDTIRESKL 60
           MAASAKT++IPDQSN+GDWT+VLPRRG+Q+K  PKLR +EDQRTWSP+DQANDTIRESKL
Sbjct: 129 MAASAKTVSIPDQSNSGDWTVVLPRRGKQKKTFPKLRIREDQRTWSPTDQANDTIRESKL 188

Query: 61  LHKMEICIKKVEISQFYRTLVVELETMPVLESLNRVLASESKMGMVIYGVGSIENYENPR 120
           L KMEICIKK+E SQFY+TLV ELETMP LESLNRVL SESKMGMV+YGVGSIENYENPR
Sbjct: 189 LQKMEICIKKLENSQFYQTLVEELETMPFLESLNRVLGSESKMGMVVYGVGSIENYENPR 248

Query: 121 LQLSLAILLKRKFSWIGRLEVFDPILSAIECRIIESFGCSVLSVNEQGRRCAQKPTMFFM 180
           LQLSLAILLKRKFSWI  LEVFDPILSA ECR++ESFGCSVLS NEQGRRCA+KPTMFFM
Sbjct: 249 LQLSLAILLKRKFSWIESLEVFDPILSATECRLMESFGCSVLSFNEQGRRCAEKPTMFFM 308

Query: 181 PHCEAELYNNLLQENWPVELLNHVVLFGNSFEIYEQFVSEFKNSPVVDSAKYILASRKFS 240
           PHCEAELYNNLLQENW V LLNH+VLFGNSFEIYEQFVSEFKNSPVVDS+K+ILASRKF 
Sbjct: 309 PHCEAELYNNLLQENWKVGLLNHIVLFGNSFEIYEQFVSEFKNSPVVDSSKFILASRKFI 368

Query: 241 REIKIKTL 249
           REIKIKT+
Sbjct: 369 REIKIKTV 376

[Close]

BLAST of CmaCh04G022150.1 vs. TrEMBL
Match: M5VQP0_PRUPE (Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa009752mg PE=4 SV=1)

HSP 1 Score: 316.6 bits (810), Expect = 2.7e-83
Identity = 158/250 (63.20%), Postives = 198/250 (79.20%), Query Frame = 1


Query: 1   MAASAKTLAIPDQSNNGDWTIVLPRRGRQRKNLPKL--RKQEDQRTWSPSDQANDTIRES 60
           MAASAKTL     + NGDWT+V  RRGRQR+N PK+  R Q+    W+P+D   +  RES
Sbjct: 1   MAASAKTLTAESHTLNGDWTVVSSRRGRQRRNPPKITIRVQKQPSHWAPTDLEINFARES 60

Query: 61  KLLHKMEICIKKVEISQFYRTLVVELETMPVLESLNRVLASESKMGMVIYGVGSIENYEN 120
           KL+ KM+IC+KK+E+SQF+  L+ E++T  ++   +RVL+SE KM MVIYG+GSIE+YE+
Sbjct: 61  KLMQKMQICMKKLEMSQFFLNLLDEIQTPEMMNYFHRVLSSELKMKMVIYGIGSIESYES 120

Query: 121 PRLQLSLAILLKRKFSWIGRLEVFDPILSAIECRIIESFGCSVLSVNEQGRRCAQKPTMF 180
           PRLQLSLAILLKRKF+WIG +EVFDPILSA E R++E+  C VLS+NEQGRR A+KPTMF
Sbjct: 121 PRLQLSLAILLKRKFNWIGDIEVFDPILSATESRVLEALECCVLSINEQGRRQAEKPTMF 180

Query: 181 FMPHCEAELYNNLLQENWPVELLNHVVLFGNSFEIYEQFVSEFKNSPVVDSAKYILASRK 240
           FMPHCEAELY+NLLQ NW   LLN  VLFGNSFE YEQ +SE+KNS +VDS ++ILA RK
Sbjct: 181 FMPHCEAELYDNLLQANWEARLLNCTVLFGNSFETYEQHLSEYKNSAIVDSTRHILAVRK 240

Query: 241 FSREIKIKTL 249
           F+ E +IKT+
Sbjct: 241 FTDEFRIKTI 250

[Close]

BLAST of CmaCh04G022150.1 vs. TrEMBL
Match: W9R0F4_9ROSA (Uncharacterized protein OS=Morus notabilis GN=L484_023959 PE=4 SV=1)

HSP 1 Score: 311.2 bits (796), Expect = 1.1e-81
Identity = 154/249 (61.85%), Postives = 201/249 (80.72%), Query Frame = 1


Query: 1   MAASAKTLAIPDQSNNGDWTIVLPRRGRQRK-NLPKLRKQEDQRTWSPSDQANDTIRESK 60
           MAASAKTL     S NG+WT+VLPRRGR+R   + + R+Q+   +W+P+D   +++RESK
Sbjct: 1   MAASAKTLTAKTSSMNGEWTVVLPRRGRKRTCPITRTREQQQPVSWAPTDFEVNSLRESK 60

Query: 61  LLHKMEICIKKVEISQFYRTLVVELETMPVLESLNRVLASESKMGMVIYGVGSIENYENP 120
           L  KM+IC+KK+E SQF+ TL+ ++ +  +++  ++VL SE KM MVIYG+GSIE+YENP
Sbjct: 61  LKQKMQICMKKLETSQFFLTLLDQIRSPEIIQCFHKVLGSELKMQMVIYGIGSIESYENP 120

Query: 121 RLQLSLAILLKRKFSWIGRLEVFDPILSAIECRIIESFGCSVLSVNEQGRRCAQKPTMFF 180
           RLQLSLA+LLK KF WIG +EVFDPILSA E R++E  GCSVLS+NEQGRR  QKPTM F
Sbjct: 121 RLQLSLALLLKSKFGWIGDIEVFDPILSATESRVLEFLGCSVLSINEQGRRKVQKPTMLF 180

Query: 181 MPHCEAELYNNLLQENWPVELLNHVVLFGNSFEIYEQFVSEFKNSPVVDSAKYILASRKF 240
           MPHCEAELY+NLLQENW +E LN++V+FGNSFE YEQFVSEFKNS V  SA+++L+++KF
Sbjct: 181 MPHCEAELYDNLLQENWRIEHLNNLVIFGNSFENYEQFVSEFKNSTVA-SARHMLSAQKF 240

Query: 241 SREIKIKTL 249
           + E KI+T+
Sbjct: 241 TEEFKIQTV 248

[Close]

BLAST of CmaCh04G022150.1 vs. TrEMBL
Match: B9S4K4_RICCO (Protein SENSITIVITY TO RED LIGHT REDUCED, putative OS=Ricinus communis GN=RCOM_0809580 PE=4 SV=1)

HSP 1 Score: 310.1 bits (793), Expect = 2.5e-81
Identity = 149/249 (59.84%), Postives = 202/249 (81.12%), Query Frame = 1


Query: 1   MAASAKTLAIPDQSNNGDWTIVLPRRGRQRKNLPKLR-KQEDQRTWSPSDQANDTIRESK 60
           M ASAK L + + + NG+WT+VLP RG++ +N  K+R  +E Q+ W P+D  +D+ R+SK
Sbjct: 1   MDASAKILTVDNHTCNGEWTVVLP-RGKRSRNFSKIRTPEEQQQPWVPADLESDSNRQSK 60

Query: 61  LLHKMEICIKKVEISQFYRTLVVELETMPVLESLNRVLASESKMGMVIYGVGSIENYENP 120
           L+ KM IC+KKVE SQFY+TL+ +++T   L+S ++VL SE KM MVIYG+GSIE+YE P
Sbjct: 61  LIEKMNICMKKVENSQFYQTLLEQIQTPESLDSFHKVLGSELKMQMVIYGIGSIESYETP 120

Query: 121 RLQLSLAILLKRKFSWIGRLEVFDPILSAIECRIIESFGCSVLSVNEQGRRCAQKPTMFF 180
           R+QLS+AIL+K++FSWIG +EVFDP+LSA E R++E+ GCSVLSVNE GRRC  +PT+F+
Sbjct: 121 RIQLSVAILMKKEFSWIGDIEVFDPVLSATESRVLEALGCSVLSVNEHGRRCVTRPTLFY 180

Query: 181 MPHCEAELYNNLLQENWPVELLNHVVLFGNSFEIYEQFVSEFKNSPVVDSAKYILASRKF 240
           MPHCEAELYNNLLQ NW VELLN + LFGNSFE+Y Q++SEF+NS +VDS+++I+A R+F
Sbjct: 181 MPHCEAELYNNLLQANWRVELLNRIALFGNSFEVY-QYLSEFRNSTIVDSSRHIVAVREF 240

Query: 241 SREIKIKTL 249
           + E  IKT+
Sbjct: 241 THEYVIKTV 247

[Close]

BLAST of CmaCh04G022150.1 vs. TrEMBL
Match: A5B9I4_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_012927 PE=4 SV=1)

HSP 1 Score: 307.4 bits (786), Expect = 1.6e-80
Identity = 154/249 (61.85%), Postives = 195/249 (78.31%), Query Frame = 1


Query: 1   MAASAKTLAIPDQSNNGDWTIVLPRRGRQRKNLPKLRKQED-QRTWSPSDQANDTIRESK 60
           MAASAKT+ +       DWT+VLP RG+ R+N  K +  E  Q+ W+P+D   D  RESK
Sbjct: 1   MAASAKTITLESSDAISDWTVVLPXRGKXRRNFLKSKHPEQHQQPWAPTDLEMDLHRESK 60

Query: 61  LLHKMEICIKKVEISQFYRTLVVELETMPVLESLNRVLASESKMGMVIYGVGSIENYENP 120
           L+ K++ICI+K+  S FY  L+ +++T  +LE+  RVL SE KM MV+YG+GSIE+YE P
Sbjct: 61  LMQKIQICIRKLGNSTFYHVLLDQVQTPHMLEAFLRVLGSELKMQMVVYGIGSIESYEPP 120

Query: 121 RLQLSLAILLKRKFSWIGRLEVFDPILSAIECRIIESFGCSVLSVNEQGRRCAQKPTMFF 180
           RLQLSLAILLKRKFSWIG ++VFDPILSA E R++E+ GCSVLSVNEQGRR A KPT+FF
Sbjct: 121 RLQLSLAILLKRKFSWIGDIKVFDPILSATESRVLEALGCSVLSVNEQGRRQASKPTLFF 180

Query: 181 MPHCEAELYNNLLQENWPVELLNHVVLFGNSFEIYEQFVSEFKNSPVVDSAKYILASRKF 240
           MPHCEAELY+NLLQENW  E +N++VLFGNSF  YEQ VSEF++S +VDS+++ILA RKF
Sbjct: 181 MPHCEAELYDNLLQENWRTERMNNIVLFGNSFGTYEQHVSEFRSSTLVDSSRHILAVRKF 240

Query: 241 SREIKIKTL 249
           +RE  IKT+
Sbjct: 241 TREFAIKTV 249

[Close]

BLAST of CmaCh04G022150.1 vs. TAIR10
Match: AT5G59560.1 (AT5G59560.1 sensitivity to red light reduced protein (SRR1))

HSP 1 Score: 238.4 bits (607), Expect = 4.6e-63
Identity = 119/242 (49.17%), Postives = 175/242 (72.31%), Query Frame = 1


Query: 10  IPDQSNNGDWTIVLP---RRGRQRKNLPKLRKQEDQRTWSPSDQANDTIRESKLLHKMEI 69
           + + S++G+W +VLP   R+GR+RK  PK + +E+++ W   D   D  R+++L  KMEI
Sbjct: 5   VKNSSSDGEWKVVLPSKGRQGRRRKPKPKGQAEEEEQPWKSDDLEIDPQRQARLKQKMEI 64

Query: 70  CIKKVEISQFYRTLVVELETMPVLESLNRVLASESKMGMVIYGVGSIENYENPRLQLSLA 129
            +KK+E S FY   + +L++  V   +  VL SE+++ MV+YG+GSIE+YE+PR QLS+A
Sbjct: 65  SLKKIESSSFYTAFLEQLKSPEVSNQIRLVLGSETQLQMVMYGIGSIESYESPRFQLSIA 124

Query: 130 ILLKRKFSWIG-RLEVFDPILSAIECRIIESFGCSVLSVNEQGRRCAQKPTMFFMPHCEA 189
           IL+KR+F W+G  +EVFDP+LSA E   +ES GCSVLSVNEQ RR A KPT+FFMPHCEA
Sbjct: 125 ILMKREFDWVGDNIEVFDPVLSATESSYLESLGCSVLSVNEQARREALKPTLFFMPHCEA 184

Query: 190 ELYNNLLQENWPVELLNHVVLFGNSFEIYEQFVSEFKNSPVVDSAKYILASRKFSREIKI 248
            LY+NLLQ NW ++ L+ + LFGNSF++YE+ VS   ++ V+ + K I+A+++ + E  I
Sbjct: 185 NLYSNLLQANWRMDRLSKIALFGNSFQMYEEQVS--FDAEVICATKRIIAAQRVTSEFAI 244

[Close]

BLAST of CmaCh04G022150.1 vs. NCBI nr
Match: gi|659072440|ref|XP_008465606.1| (PREDICTED: protein SENSITIVITY TO RED LIGHT REDUCED 1 [Cucumis melo])

HSP 1 Score: 441.4 bits (1134), Expect = 1.0e-120
Identity = 217/248 (87.50%), Postives = 235/248 (94.76%), Query Frame = 1


Query: 1   MAASAKTLAIPDQSNNGDWTIVLPRRGRQRKNLPKLRKQEDQRTWSPSDQANDTIRESKL 60
           MAASAKT+AIPDQSNNGDWT+VLPRRG+QRKN PKLR +EDQRTWSP+DQANDTIRESKL
Sbjct: 1   MAASAKTVAIPDQSNNGDWTVVLPRRGKQRKNFPKLRNREDQRTWSPTDQANDTIRESKL 60

Query: 61  LHKMEICIKKVEISQFYRTLVVELETMPVLESLNRVLASESKMGMVIYGVGSIENYENPR 120
           L KME+CIKK+E SQFYRTLV ELET+P LESLNRVL SESKMG+VIYGVGSIENYENPR
Sbjct: 61  LQKMEMCIKKLESSQFYRTLVEELETVPFLESLNRVLDSESKMGVVIYGVGSIENYENPR 120

Query: 121 LQLSLAILLKRKFSWIGRLEVFDPILSAIECRIIESFGCSVLSVNEQGRRCAQKPTMFFM 180
           LQLSLAILLKRKFSWI  LEVFDPILSA ECR++ESFGCSVLSVNEQGRRCA+KPTMFFM
Sbjct: 121 LQLSLAILLKRKFSWIESLEVFDPILSATECRLMESFGCSVLSVNEQGRRCAEKPTMFFM 180

Query: 181 PHCEAELYNNLLQENWPVELLNHVVLFGNSFEIYEQFVSEFKNSPVVDSAKYILASRKFS 240
           PHCEAELYNNLLQENW V+LLNH++LFGNSFEIYEQFVSEFKNSPVVDS+ +ILASRKF 
Sbjct: 181 PHCEAELYNNLLQENWKVKLLNHIMLFGNSFEIYEQFVSEFKNSPVVDSSNFILASRKFV 240

Query: 241 REIKIKTL 249
           REIKIKT+
Sbjct: 241 REIKIKTV 248

[Close]

BLAST of CmaCh04G022150.1 vs. NCBI nr
Match: gi|449452014|ref|XP_004143755.1| (PREDICTED: protein SENSITIVITY TO RED LIGHT REDUCED 1 [Cucumis sativus])

HSP 1 Score: 436.4 bits (1121), Expect = 3.3e-119
Identity = 215/248 (86.69%), Postives = 233/248 (93.95%), Query Frame = 1


Query: 1   MAASAKTLAIPDQSNNGDWTIVLPRRGRQRKNLPKLRKQEDQRTWSPSDQANDTIRESKL 60
           MAASAKT++IPDQSN+GDWT+VLPRRG+Q+K  PKLR +EDQRTWSP+DQANDTIRESKL
Sbjct: 1   MAASAKTVSIPDQSNSGDWTVVLPRRGKQKKTFPKLRIREDQRTWSPTDQANDTIRESKL 60

Query: 61  LHKMEICIKKVEISQFYRTLVVELETMPVLESLNRVLASESKMGMVIYGVGSIENYENPR 120
           L KMEICIKK+E SQFY+TLV ELETMP LESLNRVL SESKMGMV+YGVGSIENYENPR
Sbjct: 61  LQKMEICIKKLENSQFYQTLVEELETMPFLESLNRVLGSESKMGMVVYGVGSIENYENPR 120

Query: 121 LQLSLAILLKRKFSWIGRLEVFDPILSAIECRIIESFGCSVLSVNEQGRRCAQKPTMFFM 180
           LQLSLAILLKRKFSWI  LEVFDPILSA ECR++ESFGCSVLS NEQGRRCA+KPTMFFM
Sbjct: 121 LQLSLAILLKRKFSWIESLEVFDPILSATECRLMESFGCSVLSFNEQGRRCAEKPTMFFM 180

Query: 181 PHCEAELYNNLLQENWPVELLNHVVLFGNSFEIYEQFVSEFKNSPVVDSAKYILASRKFS 240
           PHCEAELYNNLLQENW V LLNH+VLFGNSFEIYEQFVSEFKNSPVVDS+K+ILASRKF 
Sbjct: 181 PHCEAELYNNLLQENWKVGLLNHIVLFGNSFEIYEQFVSEFKNSPVVDSSKFILASRKFI 240

Query: 241 REIKIKTL 249
           REIKIKT+
Sbjct: 241 REIKIKTV 248

[Close]

BLAST of CmaCh04G022150.1 vs. NCBI nr
Match: gi|700195945|gb|KGN51122.1| (hypothetical protein Csa_5G457240 [Cucumis sativus])

HSP 1 Score: 436.4 bits (1121), Expect = 3.3e-119
Identity = 215/248 (86.69%), Postives = 233/248 (93.95%), Query Frame = 1


Query: 1   MAASAKTLAIPDQSNNGDWTIVLPRRGRQRKNLPKLRKQEDQRTWSPSDQANDTIRESKL 60
           MAASAKT++IPDQSN+GDWT+VLPRRG+Q+K  PKLR +EDQRTWSP+DQANDTIRESKL
Sbjct: 129 MAASAKTVSIPDQSNSGDWTVVLPRRGKQKKTFPKLRIREDQRTWSPTDQANDTIRESKL 188

Query: 61  LHKMEICIKKVEISQFYRTLVVELETMPVLESLNRVLASESKMGMVIYGVGSIENYENPR 120
           L KMEICIKK+E SQFY+TLV ELETMP LESLNRVL SESKMGMV+YGVGSIENYENPR
Sbjct: 189 LQKMEICIKKLENSQFYQTLVEELETMPFLESLNRVLGSESKMGMVVYGVGSIENYENPR 248

Query: 121 LQLSLAILLKRKFSWIGRLEVFDPILSAIECRIIESFGCSVLSVNEQGRRCAQKPTMFFM 180
           LQLSLAILLKRKFSWI  LEVFDPILSA ECR++ESFGCSVLS NEQGRRCA+KPTMFFM
Sbjct: 249 LQLSLAILLKRKFSWIESLEVFDPILSATECRLMESFGCSVLSFNEQGRRCAEKPTMFFM 308

Query: 181 PHCEAELYNNLLQENWPVELLNHVVLFGNSFEIYEQFVSEFKNSPVVDSAKYILASRKFS 240
           PHCEAELYNNLLQENW V LLNH+VLFGNSFEIYEQFVSEFKNSPVVDS+K+ILASRKF 
Sbjct: 309 PHCEAELYNNLLQENWKVGLLNHIVLFGNSFEIYEQFVSEFKNSPVVDSSKFILASRKFI 368

Query: 241 REIKIKTL 249
           REIKIKT+
Sbjct: 369 REIKIKTV 376

[Close]

BLAST of CmaCh04G022150.1 vs. NCBI nr
Match: gi|1009175277|ref|XP_015868794.1| (PREDICTED: protein SENSITIVITY TO RED LIGHT REDUCED 1 [Ziziphus jujuba])

HSP 1 Score: 323.9 bits (829), Expect = 2.4e-85
Identity = 159/255 (62.35%), Postives = 203/255 (79.61%), Query Frame = 1


Query: 1   MAASAKTLAIPDQSNNGDWTIVLPRRGRQRKNL-----PKLRKQEDQRT--WSPSDQAND 60
           MAASAKTL + + S NG+W IVLPRR R+RK       P+  +Q+ Q++  W+PSD  +D
Sbjct: 1   MAASAKTLTVENPSLNGEWKIVLPRRARRRKTSLGAKSPQQPQQQQQQSSSWAPSDFESD 60

Query: 61  TIRESKLLHKMEICIKKVEISQFYRTLVVELETMPVLESLNRVLASESKMGMVIYGVGSI 120
            IRESKLL KM+IC+KK+E+SQF+ TL+ +++T  + +  +R+L SESKM MVIYG+GSI
Sbjct: 61  IIRESKLLQKMQICMKKLEVSQFFLTLLDQIQTPEISDCFHRILGSESKMKMVIYGIGSI 120

Query: 121 ENYENPRLQLSLAILLKRKFSWIGRLEVFDPILSAIECRIIESFGCSVLSVNEQGRRCAQ 180
           E+YE+PRLQLSLAILL++KF+WIG +EVFDP+LSA E R++E+ GCSVLS+NEQGRR AQ
Sbjct: 121 ESYESPRLQLSLAILLRKKFNWIGEIEVFDPVLSATEARVLEALGCSVLSINEQGRRLAQ 180

Query: 181 KPTMFFMPHCEAELYNNLLQENWPVELLNHVVLFGNSFEIYEQFVSEFKNSPVVDSAKYI 240
            PT+FFMPHCEAELYNNLLQ NW V  LNH+ LFGNSFE YEQ  S FKNS V +SAK+I
Sbjct: 181 NPTLFFMPHCEAELYNNLLQSNWEVGFLNHIALFGNSFETYEQHFSVFKNSKVAESAKHI 240

Query: 241 LASRKFSREIKIKTL 249
           L  RKF+ E +I+T+
Sbjct: 241 LGVRKFTEEFRIQTV 255

[Close]

BLAST of CmaCh04G022150.1 vs. NCBI nr
Match: gi|645270677|ref|XP_008240563.1| (PREDICTED: protein SENSITIVITY TO RED LIGHT REDUCED 1 [Prunus mume])

HSP 1 Score: 319.3 bits (817), Expect = 5.9e-84
Identity = 160/250 (64.00%), Postives = 199/250 (79.60%), Query Frame = 1


Query: 1   MAASAKTLAIPDQSNNGDWTIVLPRRGRQRKNLPKL--RKQEDQRTWSPSDQANDTIRES 60
           MAASAKTL     + NGDWT+V  RRGRQRKN PK+  R Q+    W+P+D   +  RES
Sbjct: 1   MAASAKTLTAESHTLNGDWTVVSSRRGRQRKNPPKITIRVQKQPSHWAPTDLEINFARES 60

Query: 61  KLLHKMEICIKKVEISQFYRTLVVELETMPVLESLNRVLASESKMGMVIYGVGSIENYEN 120
           KL+ K++IC+KK+E+SQF+  L+ E++T  ++   +RVL+SE KM MVIYG+GSIE+YE+
Sbjct: 61  KLMQKIQICMKKLEMSQFFLNLLDEIQTPEMMNYFHRVLSSELKMKMVIYGIGSIESYES 120

Query: 121 PRLQLSLAILLKRKFSWIGRLEVFDPILSAIECRIIESFGCSVLSVNEQGRRCAQKPTMF 180
           PRLQLSLAILLKRKF+WIG +EVFDPILSA E R++E+  CSVLS+NEQGRR A+KPTMF
Sbjct: 121 PRLQLSLAILLKRKFNWIGDIEVFDPILSATESRVLEALECSVLSINEQGRRQAEKPTMF 180

Query: 181 FMPHCEAELYNNLLQENWPVELLNHVVLFGNSFEIYEQFVSEFKNSPVVDSAKYILASRK 240
           FMPHCEAELY+NLLQ NW   LLN  VLFGNSFE YEQ +SE+KNS +VDS K+ILA RK
Sbjct: 181 FMPHCEAELYDNLLQANWEARLLNCTVLFGNSFETYEQHLSEYKNSAIVDSTKHILAVRK 240

Query: 241 FSREIKIKTL 249
           F+ E +IKT+
Sbjct: 241 FTDEFRIKTI 250

The following BLAST results are available for this feature:

BLAST of CmaCh04G022150.1 vs. Swiss-Prot


Match Name	E-value	Identity	Description
SRR1_ARATH	8.2e-62	49.17	Protein SENSITIVITY TO RED LIGHT REDUCED 1 OS=Arabidopsis thaliana GN=SRR1 PE=2 ...	[more]
SRR1L_MOUSE	1.9e-18	32.29	SRR1-like protein OS=Mus musculus GN=Srrd PE=2 SV=4	[more]
SRR1L_HUMAN	2.4e-16	41.23	SRR1-like protein OS=Homo sapiens GN=SRRD PE=2 SV=1	[more]

BLAST of CmaCh04G022150.1 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0KRU2_CUCSA	2.3e-119	86.69	Uncharacterized protein OS=Cucumis sativus GN=Csa_5G457240 PE=4 SV=1	[more]
M5VQP0_PRUPE	2.7e-83	63.20	Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa009752mg PE=4 SV=1	[more]
W9R0F4_9ROSA	1.1e-81	61.85	Uncharacterized protein OS=Morus notabilis GN=L484_023959 PE=4 SV=1	[more]
B9S4K4_RICCO	2.5e-81	59.84	Protein SENSITIVITY TO RED LIGHT REDUCED, putative OS=Ricinus communis GN=RCOM_0...	[more]
A5B9I4_VITVI	1.6e-80	61.85	Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_012927 PE=4 SV=1	[more]

BLAST of CmaCh04G022150.1 vs. TAIR10


Match Name	E-value	Identity	Description
AT5G59560.1	4.6e-63	49.17	sensitivity to red light reduced protein (SRR1)	[more]

BLAST of CmaCh04G022150.1 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|659072440\|ref\|XP_008465606.1\|	1.0e-120	87.50	PREDICTED: protein SENSITIVITY TO RED LIGHT REDUCED 1 [Cucumis melo]	[more]
gi\|449452014\|ref\|XP_004143755.1\|	3.3e-119	86.69	PREDICTED: protein SENSITIVITY TO RED LIGHT REDUCED 1 [Cucumis sativus]	[more]
gi\|700195945\|gb\|KGN51122.1\|	3.3e-119	86.69	hypothetical protein Csa_5G457240 [Cucumis sativus]	[more]
gi\|1009175277\|ref\|XP_015868794.1\|	2.4e-85	62.35	PREDICTED: protein SENSITIVITY TO RED LIGHT REDUCED 1 [Ziziphus jujuba]	[more]
gi\|645270677\|ref\|XP_008240563.1\|	5.9e-84	64.00	PREDICTED: protein SENSITIVITY TO RED LIGHT REDUCED 1 [Prunus mume]	[more]

Annotated Terms

The following terms have been associated with this mRNA:

Vocabulary: **INTERPRO**
Term	Definition
IPR012942	SRR1-like

GO Annotation

GO Assignments

This mRNA is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0009585	red, far-red light phototransduction
biological_process	GO:0042752	regulation of circadian rhythm
cellular_component	GO:0005737	cytoplasm
cellular_component	GO:0005634	nucleus
molecular_function	GO:0003674	molecular_function

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
CmaCh04G022150	CmaCh04G022150	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
CmaCh04G022150.1	CmaCh04G022150.1-protein	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
CmaCh04G022150.1.CDS.1	CmaCh04G022150.1.CDS.1	CDS

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
CmaCh04G022150.1.exon.1	CmaCh04G022150.1.exon.1	exon

InterPro

Analysis Name: InterPro Annotations of Cucurbita maxima
Date Performed: 2017-05-20


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR012942	Sensitivity To Red Light Reduced-like, SRR1	PFAM	PF07985	SRR1	coord: 105..157 score: 9.5
None	No IPR available	PANTHER	PTHR28626	FAMILY NOT NAMED	coord: 9..247 score: 8.2
None	No IPR available	PANTHER	PTHR28626:SF3	SRR1-LIKE PROTEIN	coord: 9..247 score: 8.2