CmaCh04G019860.1 (mRNA) Cucurbita maxima (Rimu)

Overview
NameCmaCh04G019860.1
TypemRNA
OrganismCucurbita maxima (Cucurbita maxima (Rimu))
DescriptionRibosomal protein S13
LocationCma_Chr04 : 11698071 .. 11701007 (+)
Sequence length597
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
GAGCTAGATCAGTTACCGATAAACAAGTCAGAATTGCCTCAACCAAAATTGATTGAATTGGACCTAAAAAAGCCATTCAGGTTCGTTATCGATTAGGTATCAGTGGGAACATCAAGATCAAAGAGTTAACTAAGTCTCAGATCGACCAAATTGAACAAATGATAGGTCAAGATCACATTGTTCATTGGGAATTGAAGAGAGGAGAACGAGTAGACATCGAACGATTCATTTCTCTTTCTTGTTATCGTGGAATTCATCATCAAGATGGATTGCCCTTACGCAGTCAACGAACTCATACTAATGCTAGGACTTGTCGCAAGCGAATTCGGAAATGAAATCAGTCTACCGAAAGCCCTTGGTACTTGTCGGATCAATCACACAGTTAAATAGTTCACTTCAATTTGGCGTCTTTTGGTATTTCAGCGGTTACTAATCTAGTATACGTAACGTATGCCTCCTTCGCCACTCCATTAGTGGCTCGGCTTCATCCTAGATGTTACAGCTTCTGCCTCTCACGGATTCACTATCGCTCATGACTGGTATATGGATCTCTTGATTTATGTAGTGGTCGGCCTGATAAAAGCTAAGCTTGGCCAGAAAGAAGCTACTAGTCGCTTCCCGAATGCCTGCCTCTTGACTTATGGTTTAATCTGATTTCCAATGCCTCCTTCCCTTCCTTGCCGCCAACGGAGAGTAAGCAAGCGACCTTGCTTGCATTCGTTAAAGGGTAGCTTCTGCGCCCTTACTGCCTGCTTCAATTGATGTGAATGAGAGTATCTTCAAATCCTATTTAGTCTTTTTCTTTCTCTCTGTCACTGAAACAAGAAGTTCTGTCTCTGTTTTCTTTTCAGATTCCGAGGATGAGCCGGCCGATCCTAACATCATTTATGAGGAGCCAGACCACGAAGTCTCCTCCTCAGATAAAGATGTCTCCGATGTGACTGGCAAAAACCACTTTTTCTATTGTGATTCTTTTTGCGGGTTCGGTCAGGTAATAGAAGCGAAGGAGAGATGCTTTCCATCAGTCAAAAGCAGATATCGCCCACCCATGCTCCCCAAGTCCGCTTACCGAGGAAGAACTGGAGCCAGAGCTAGTTGGGTTGGGGTAAAGAGCCGTAAGCGCAGTGGGGGGTGACAGAGGACATGCTCGTACAGTTCAAAGAAGGGTATGATCAACTCGTTGATTGTTGGGAACTTTCACTCCTCTATATTCGAAATATGCTTTCTAGAAGCATTACGATCTGCAGCTCAAATGGTACCTTATGAAGTCTCTATCGGTCTGATTCTTATTGTGCGCCTTGTGAGCGCGTTTGGATCCGCGAAGGCAATCGCTCGGATGTTCTCCTAACCCAACCCGGGAACGGACTGGAAGGAATCGCAGCATTGGGAATGTTCACATCTCGTCGCAAGGCTCATTTTGAGTTGTGGGTCGGGGGTTTATCTAATCAAGGGCCGGGGCACAAGGGTCTTGGTACTATCCAGGTGCGAAGAACCACGGGGGTGACTGCAATGAGTAGAAATCTCACTTACCGGCCTAAACGACGAGCAAACACTCGAACGTGAGAGTAAGGGATCACCCAAGGAATGGACGAGCTCCAAGGAGGGAGGCAAGAACCATGCTTTCAGAGACTTAACCCAACCCAACGGTCCCGAATCTTATCTGAATTGCTAGAATAACTGACTAAGTCATGCCTATATATAGGCTCATTCTCCAAACGGCGCGGGGCCAAGCCTTTAGGTTGTTTAAGTAGATTGGGTGAAAGATCGGCCATAGACGATGCCGCCCGTTTTCATTTCGTGGAAGTCCCCGCCAGAGAAAAGAAAGGGCTGTAGGTGATGGTGAGTTCCGCTTCTTATCTAGAGAGGGAGTAAGGAGTAAGTAGCTCGACCGATAGGGAGAGAGAGGGGTGAAGCTGTGAGACGAGAAGAGGGGCGCTGAAATCGTTCCTATTGGATTTGGTCGTGCGCGGCAGCTGGTAGAGATGAATGATGAATAAAGGCGGGCCGCTTCAACGGGACCTATTCTCTTAATAGGCGGCAAAGTAGAATAGGAAAGGGGCTGAGTGATGAGTGCCTTTTTAGCCTTTTTCTAAAGACTCTCATGTGAAGCTAACATGGCTCGCTACATACAAGTATAGCCAAAGAAAGATGAGACAGGACAGACGGTCAGAGGCTGTAGCAGGACTACCATAGGAAAGCCCGCCCCCTCTCGCTAACATAGAAAGTGATTCCCATAACTAGTCTCTATGTGAATCTCTTCTCAACCAGCCGAATCGGGCCACCATTTGGGGTGGGAATGTCTCAGCACACATGCATCATTTGATGAAAGCACTCCAGTCCAGTTGCCTCCTCGTAGTGGCTTGTCAACCATGCTTTCCCTCCCTCAAAACAATGCTCCTCACCAAAAGCCCTTGGGGCAACACAGCAATGAGTAGTTCGCTCCAGGACTCCACCCCCTCGAGAGCAGGATGCCGGCCGAGATAGAGCTGGAAGCCAACCTAGACTTTCCTGGGGCTTGTCCCAACATCTAAATCAAATTGTTGGCAGGCTAGAAAAGGAACCAGCCCAGCCTCGGAAATCAAGCTTTGCGTGGTATGCCCTGCCTATTCACTCGGACAATGCTATGAACACGAAAATGTGCAGTTCCGCCCCCTTCTCCCATGCTGAGTCACAGGCAGTGCCACGGAAAGCACGGACGAGCCACATGCAGGGAAACTTGCACGTGTGGTTCTGGTCGGGGACCCTGGTATACTGTACTAATATGTGTAGGTCCCCGTAATTCGAGTGAGATTGTCATCGTGCAAAAGAAGATATGGTATGGTATTCCCTTGTTCCCTGTATTGGTTATGTTCTTTATTTCTCGTCTAGCAGAAACTAATCGAGCTCTGTTTGATCTCCCAGAAGCGGAAGCTGAATCAGTTGCAGGCTATAATGTAG

mRNA sequence

GAGCTAGATCAGTTACCGATAAACAAGTCAGAATTGCCTCAACCAAAATTGATTGAATTGGACCTAAAAAAGCCATTCAGTGGGAACATCAAGATCAAAGAGTTAACTAAGTCTCAGATCGACCAAATTGAACAAATGATAGGTCAAGATCACATTGTTCATTGGGAATTGAAGAGAGGAGAACGAGTAGACATCGAACGATTCATTTCTCTTTCTTGTTATCTCAACGAACTCATACTAATGCTAGGACTTGTCGCAAGCGAATTCGGAAATGAAATCAGTCTACCGAAAGCCCTTGACCACGAAGTCTCCTCCTCAGATAAAGATGTCTCCGATGTAATAGAAGCGAAGGAGAGATGCTTTCCATCAGTCAAAAGCAGATATCGCCCACCCATGCTCCCCAAGTCCGCTTACCGAGGAAGAACTGGAGCCAGAGCTAGTTGGGTTGGGGTAAAGAGCCAAGCATTACGATCTGCAGCTCAAATGGTACCTTATGAAGTCTCTATCGGTCTGATTCTTATTGTGCGCCTTAAACTAATCGAGCTCTGTTTGATCTCCCAGAAGCGGAAGCTGAATCAGTTGCAGGCTATAATGTAG

Coding sequence (CDS)

GAGCTAGATCAGTTACCGATAAACAAGTCAGAATTGCCTCAACCAAAATTGATTGAATTGGACCTAAAAAAGCCATTCAGTGGGAACATCAAGATCAAAGAGTTAACTAAGTCTCAGATCGACCAAATTGAACAAATGATAGGTCAAGATCACATTGTTCATTGGGAATTGAAGAGAGGAGAACGAGTAGACATCGAACGATTCATTTCTCTTTCTTGTTATCTCAACGAACTCATACTAATGCTAGGACTTGTCGCAAGCGAATTCGGAAATGAAATCAGTCTACCGAAAGCCCTTGACCACGAAGTCTCCTCCTCAGATAAAGATGTCTCCGATGTAATAGAAGCGAAGGAGAGATGCTTTCCATCAGTCAAAAGCAGATATCGCCCACCCATGCTCCCCAAGTCCGCTTACCGAGGAAGAACTGGAGCCAGAGCTAGTTGGGTTGGGGTAAAGAGCCAAGCATTACGATCTGCAGCTCAAATGGTACCTTATGAAGTCTCTATCGGTCTGATTCTTATTGTGCGCCTTAAACTAATCGAGCTCTGTTTGATCTCCCAGAAGCGGAAGCTGAATCAGTTGCAGGCTATAATGTAG

Protein sequence

ELDQLPINKSELPQPKLIELDLKKPFSGNIKIKELTKSQIDQIEQMIGQDHIVHWELKRGERVDIERFISLSCYLNELILMLGLVASEFGNEISLPKALDHEVSSSDKDVSDVIEAKERCFPSVKSRYRPPMLPKSAYRGRTGARASWVGVKSQALRSAAQMVPYEVSIGLILIVRLKLIELCLISQKRKLNQLQAIM
Homology
[Close]
BLAST of CmaCh04G019860.1 vs. Swiss-Prot
Match: RT13_DAUCA (Ribosomal protein S13, mitochondrial OS=Daucus carota GN=RPS13 PE=3 SV=1)

HSP 1 Score: 96.3 bits (238), Expect = 4.0e-19
Identity = 45/59 (76.27%), Postives = 51/59 (86.44%), Query Frame = 1 

Query: 16 KLIELDLKKPFSGNIKIKELTKSQIDQIEQMIGQDHIVHWELKRGERVDIERFISLSCY 75
          K I++  +   SGNIKIKELTK QIDQ+EQMIGQDH+VHWELKRGER DIERFIS+SCY
Sbjct: 29 KAIQVCYRLGISGNIKIKELTKYQIDQMEQMIGQDHVVHWELKRGERADIERFISISCY 87

[Close]
BLAST of CmaCh04G019860.1 vs. Swiss-Prot
Match: RT13_TOBAC (Ribosomal protein S13, mitochondrial OS=Nicotiana tabacum GN=RPS13 PE=3 SV=2)

HSP 1 Score: 95.5 bits (236), Expect = 6.9e-19
Identity = 45/59 (76.27%), Postives = 50/59 (84.75%), Query Frame = 1 

Query: 16 KLIELDLKKPFSGNIKIKELTKSQIDQIEQMIGQDHIVHWELKRGERVDIERFISLSCY 75
          K I++  +   SGNIKIKELTK QIDQIEQMIGQDH+VHWELKRGER DIER IS+SCY
Sbjct: 29 KAIQVRYRLGISGNIKIKELTKYQIDQIEQMIGQDHVVHWELKRGERADIERLISISCY 87

[Close]
BLAST of CmaCh04G019860.1 vs. Swiss-Prot
Match: NU1M_CITLA (NADH-ubiquinone oxidoreductase chain 1 OS=Citrullus lanatus GN=ND1 PE=2 SV=1)

HSP 1 Score: 91.7 bits (226), Expect = 1.0e-17
Identity = 57/90 (63.33%), Postives = 59/90 (65.56%), Query Frame = 1 

Query: 113 VIEAKERCFPSVKSRYRPPMLPKSAY----RGRTGARASWVGVKSQ-------------- 172
           VIEAKERCFPSVKSRYRPP  P        +GRTGARASWVGVKS+              
Sbjct: 46  VIEAKERCFPSVKSRYRPPHAPPVRLPRNRKGRTGARASWVGVKSRKRGGGLLGTFTPLY 105

Query: 173 -------ALRSAAQMVPYEVSIGLILIVRL 178
                  ALRSAAQMVPYEVSIGLILIVRL
Sbjct: 106 SKYAFLGALRSAAQMVPYEVSIGLILIVRL 135

[Close]
BLAST of CmaCh04G019860.1 vs. Swiss-Prot
Match: RT13_OENBE (Ribosomal protein S13, mitochondrial OS=Oenothera berteroana GN=RPS13 PE=3 SV=2)

HSP 1 Score: 89.7 bits (221), Expect = 3.8e-17
Identity = 41/55 (74.55%), Postives = 46/55 (83.64%), Query Frame = 1 

Query: 20 LDLKKPFSGNIKIKELTKSQIDQIEQMIGQDHIVHWELKRGERVDIERFISLSCY 75
          + ++    GNIK KELTK QIDQIEQM GQDH+VHWELKRGER DIERFIS+SCY
Sbjct: 31 IQVRSRLGGNIKRKELTKYQIDQIEQMRGQDHVVHWELKRGERADIERFISISCY 85

[Close]
BLAST of CmaCh04G019860.1 vs. Swiss-Prot
Match: RT13_MAIZE (Ribosomal protein S13, mitochondrial OS=Zea mays GN=RPS13 PE=3 SV=2)

HSP 1 Score: 87.4 bits (215), Expect = 1.9e-16
Identity = 43/59 (72.88%), Postives = 47/59 (79.66%), Query Frame = 1 

Query: 16 KLIELDLKKPFSGNIKIKELTKSQIDQIEQMIGQDHIVHWELKRGERVDIERFISLSCY 75
          K I+L  +   SGNIKI ELTK QIDQIEQMI QDH+VHWELKRGER DIER IS+S Y
Sbjct: 29 KAIQLRYRLGISGNIKIHELTKYQIDQIEQMIAQDHVVHWELKRGERADIERLISISRY 87

[Close]
BLAST of CmaCh04G019860.1 vs. TrEMBL
Match: G3EU28_CUCME (Ribosomal protein S13 OS=Cucumis melo subsp. melo GN=rps13 PE=3 SV=1)

HSP 1 Score: 99.0 bits (245), Expect = 6.9e-18
Identity = 48/59 (81.36%), Postives = 51/59 (86.44%), Query Frame = 1 

Query: 16 KLIELDLKKPFSGNIKIKELTKSQIDQIEQMIGQDHIVHWELKRGERVDIERFISLSCY 75
          K I++  +   SGNIKIKELTK QIDQIEQMIGQDHIVHWELKRGER DIERFISLSCY
Sbjct: 29 KAIQVRYRLGISGNIKIKELTKYQIDQIEQMIGQDHIVHWELKRGERADIERFISLSCY 87

[Close]
BLAST of CmaCh04G019860.1 vs. TrEMBL
Match: D5I3H3_CUCPE (Ribosomal protein S13 OS=Cucurbita pepo GN=rps13 PE=3 SV=1)

HSP 1 Score: 98.2 bits (243), Expect = 1.2e-17
Identity = 48/59 (81.36%), Postives = 51/59 (86.44%), Query Frame = 1 

Query: 16 KLIELDLKKPFSGNIKIKELTKSQIDQIEQMIGQDHIVHWELKRGERVDIERFISLSCY 75
          K I++  +   SGNIKIKELTKSQIDQIEQMIGQDHIVHWELKRGER DIER ISLSCY
Sbjct: 29 KAIQVCYRLGISGNIKIKELTKSQIDQIEQMIGQDHIVHWELKRGERADIERVISLSCY 87

[Close]
BLAST of CmaCh04G019860.1 vs. TrEMBL
Match: B9U3L5_CARPA (Ribosomal protein S13 OS=Carica papaya GN=rps13 PE=3 SV=1)

HSP 1 Score: 97.8 bits (242), Expect = 1.5e-17
Identity = 46/59 (77.97%), Postives = 51/59 (86.44%), Query Frame = 1 

Query: 16 KLIELDLKKPFSGNIKIKELTKSQIDQIEQMIGQDHIVHWELKRGERVDIERFISLSCY 75
          K I++  +   SGNIKIKELTK QIDQIEQMIGQDH+VHWELKRGER DIERFIS+SCY
Sbjct: 29 KAIQVRYRLGISGNIKIKELTKYQIDQIEQMIGQDHVVHWELKRGERADIERFISISCY 87

[Close]
BLAST of CmaCh04G019860.1 vs. TrEMBL
Match: D5I3C9_CITLA (Ribosomal protein S13 OS=Citrullus lanatus GN=rps13 PE=3 SV=1)

HSP 1 Score: 97.8 bits (242), Expect = 1.5e-17
Identity = 47/59 (79.66%), Postives = 51/59 (86.44%), Query Frame = 1 

Query: 16 KLIELDLKKPFSGNIKIKELTKSQIDQIEQMIGQDHIVHWELKRGERVDIERFISLSCY 75
          K I++  +   SGNIKIKELTK QIDQIEQMIGQDHIVHWELKRGER DIERFIS+SCY
Sbjct: 29 KAIQVCYRLGISGNIKIKELTKYQIDQIEQMIGQDHIVHWELKRGERADIERFISISCY 87

[Close]
BLAST of CmaCh04G019860.1 vs. TrEMBL
Match: I1T1V3_ERYGU (Ribosomal protein subunit S13 OS=Erythranthe guttata GN=rps13 PE=3 SV=1)

HSP 1 Score: 97.8 bits (242), Expect = 1.5e-17
Identity = 46/59 (77.97%), Postives = 51/59 (86.44%), Query Frame = 1 

Query: 16 KLIELDLKKPFSGNIKIKELTKSQIDQIEQMIGQDHIVHWELKRGERVDIERFISLSCY 75
          K I++  +   SGNIKIKELTK QIDQIEQMIGQDH+VHWELKRGER DIERFIS+SCY
Sbjct: 29 KAIQVRYRLGISGNIKIKELTKYQIDQIEQMIGQDHVVHWELKRGERADIERFISISCY 87

[Close]
BLAST of CmaCh04G019860.1 vs. NCBI nr
Match: gi|345034426|gb|AEN56112.1| (ribosomal protein S13 [Cucumis melo subsp. melo])

HSP 1 Score: 99.0 bits (245), Expect = 1.0e-17
Identity = 48/59 (81.36%), Postives = 51/59 (86.44%), Query Frame = 1 

Query: 16 KLIELDLKKPFSGNIKIKELTKSQIDQIEQMIGQDHIVHWELKRGERVDIERFISLSCY 75
          K I++  +   SGNIKIKELTK QIDQIEQMIGQDHIVHWELKRGER DIERFISLSCY
Sbjct: 29 KAIQVRYRLGISGNIKIKELTKYQIDQIEQMIGQDHIVHWELKRGERADIERFISLSCY 87

[Close]
BLAST of CmaCh04G019860.1 vs. NCBI nr
Match: gi|295311703|ref|YP_003587349.1| (ribosomal protein S13 [Cucurbita pepo])

HSP 1 Score: 98.2 bits (243), Expect = 1.7e-17
Identity = 48/59 (81.36%), Postives = 51/59 (86.44%), Query Frame = 1 

Query: 16 KLIELDLKKPFSGNIKIKELTKSQIDQIEQMIGQDHIVHWELKRGERVDIERFISLSCY 75
          K I++  +   SGNIKIKELTKSQIDQIEQMIGQDHIVHWELKRGER DIER ISLSCY
Sbjct: 29 KAIQVCYRLGISGNIKIKELTKSQIDQIEQMIGQDHIVHWELKRGERADIERVISLSCY 87

[Close]
BLAST of CmaCh04G019860.1 vs. NCBI nr
Match: gi|377806995|ref|YP_005090402.1| (rps13 gene product (mitochondrion) [Dorcoceras hygrometricum])

HSP 1 Score: 97.8 bits (242), Expect = 2.2e-17
Identity = 46/59 (77.97%), Postives = 51/59 (86.44%), Query Frame = 1 

Query: 16 KLIELDLKKPFSGNIKIKELTKSQIDQIEQMIGQDHIVHWELKRGERVDIERFISLSCY 75
          K I++  +   SGNIKIKELTK QIDQIEQMIGQDH+VHWELKRGER DIERFIS+SCY
Sbjct: 29 KAIQVRYRLGISGNIKIKELTKYQIDQIEQMIGQDHVVHWELKRGERADIERFISISCY 87

[Close]
BLAST of CmaCh04G019860.1 vs. NCBI nr
Match: gi|224020963|ref|YP_002608196.1| (ribosomal protein S13 [Carica papaya])

HSP 1 Score: 97.8 bits (242), Expect = 2.2e-17
Identity = 46/59 (77.97%), Postives = 51/59 (86.44%), Query Frame = 1 

Query: 16 KLIELDLKKPFSGNIKIKELTKSQIDQIEQMIGQDHIVHWELKRGERVDIERFISLSCY 75
          K I++  +   SGNIKIKELTK QIDQIEQMIGQDH+VHWELKRGER DIERFIS+SCY
Sbjct: 29 KAIQVRYRLGISGNIKIKELTKYQIDQIEQMIGQDHVVHWELKRGERADIERFISISCY 87

[Close]
BLAST of CmaCh04G019860.1 vs. NCBI nr
Match: gi|391348943|ref|YP_006460167.1| (ribosomal protein subunit S13 (mitochondrion) (mitochondrion) [Erythranthe guttata])

HSP 1 Score: 97.8 bits (242), Expect = 2.2e-17
Identity = 46/59 (77.97%), Postives = 51/59 (86.44%), Query Frame = 1 

Query: 16 KLIELDLKKPFSGNIKIKELTKSQIDQIEQMIGQDHIVHWELKRGERVDIERFISLSCY 75
          K I++  +   SGNIKIKELTK QIDQIEQMIGQDH+VHWELKRGER DIERFIS+SCY
Sbjct: 29 KAIQVRYRLGISGNIKIKELTKYQIDQIEQMIGQDHVVHWELKRGERADIERFISISCY 87

The following BLAST results are available for this feature:
BLAST of CmaCh04G019860.1 vs. Swiss-Prot
Match NameE-valueIdentityDescription
RT13_DAUCA4.0e-1976.27Ribosomal protein S13, mitochondrial OS=Daucus carota GN=RPS13 PE=3 SV=1[more]
RT13_TOBAC6.9e-1976.27Ribosomal protein S13, mitochondrial OS=Nicotiana tabacum GN=RPS13 PE=3 SV=2[more]
NU1M_CITLA1.0e-1763.33NADH-ubiquinone oxidoreductase chain 1 OS=Citrullus lanatus GN=ND1 PE=2 SV=1[more]
RT13_OENBE3.8e-1774.55Ribosomal protein S13, mitochondrial OS=Oenothera berteroana GN=RPS13 PE=3 SV=2[more]
RT13_MAIZE1.9e-1672.88Ribosomal protein S13, mitochondrial OS=Zea mays GN=RPS13 PE=3 SV=2[more]
BLAST of CmaCh04G019860.1 vs. TrEMBL
Match NameE-valueIdentityDescription
G3EU28_CUCME6.9e-1881.36Ribosomal protein S13 OS=Cucumis melo subsp. melo GN=rps13 PE=3 SV=1[more]
D5I3H3_CUCPE1.2e-1781.36Ribosomal protein S13 OS=Cucurbita pepo GN=rps13 PE=3 SV=1[more]
B9U3L5_CARPA1.5e-1777.97Ribosomal protein S13 OS=Carica papaya GN=rps13 PE=3 SV=1[more]
D5I3C9_CITLA1.5e-1779.66Ribosomal protein S13 OS=Citrullus lanatus GN=rps13 PE=3 SV=1[more]
I1T1V3_ERYGU1.5e-1777.97Ribosomal protein subunit S13 OS=Erythranthe guttata GN=rps13 PE=3 SV=1[more]
BLAST of CmaCh04G019860.1 vs. TAIR10
Match NameE-valueIdentityDescription
BLAST of CmaCh04G019860.1 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|345034426|gb|AEN56112.1|1.0e-1781.36ribosomal protein S13 [Cucumis melo subsp. melo][more]
gi|295311703|ref|YP_003587349.1|1.7e-1781.36ribosomal protein S13 [Cucurbita pepo][more]
gi|377806995|ref|YP_005090402.1|2.2e-1777.97rps13 gene product (mitochondrion) [Dorcoceras hygrometricum][more]
gi|224020963|ref|YP_002608196.1|2.2e-1777.97ribosomal protein S13 [Carica papaya][more]
gi|391348943|ref|YP_006460167.1|2.2e-1777.97ribosomal protein subunit S13 (mitochondrion) (mitochondrion) [Erythranthe gutta... [more]
Annotated Terms
The following terms have been associated with this mRNA:
Vocabulary: INTERPRO
TermDefinition
IPR001892Ribosomal_S13
IPR010979Ribosomal_S13-like_H2TH
Vocabulary: Molecular Function
TermDefinition
GO:0003723RNA binding
GO:0003735structural constituent of ribosome
GO:0003676nucleic acid binding
Vocabulary: Cellular Component
TermDefinition
GO:0005622intracellular
GO:0005840ribosome
Vocabulary: Biological Process
TermDefinition
GO:0006412translation
GO Annotation
GO Assignments
This mRNA is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0042254 ribosome biogenesis
biological_process GO:0006412 translation
cellular_component GO:0005622 intracellular
cellular_component GO:0005840 ribosome
cellular_component GO:0005739 mitochondrion
molecular_function GO:0003676 nucleic acid binding
molecular_function GO:0003723 RNA binding
molecular_function GO:0003735 structural constituent of ribosome
molecular_function GO:0019843 rRNA binding
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameType
CmaCh04G019860CmaCh04G019860gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameType
CmaCh04G019860.1CmaCh04G019860.1-proteinpolypeptide


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameType
CmaCh04G019860.1.exon.1CmaCh04G019860.1.exon.1exon
CmaCh04G019860.1.exon.2CmaCh04G019860.1.exon.2exon
CmaCh04G019860.1.exon.3CmaCh04G019860.1.exon.3exon
CmaCh04G019860.1.exon.4CmaCh04G019860.1.exon.4exon
CmaCh04G019860.1.exon.5CmaCh04G019860.1.exon.5exon
CmaCh04G019860.1.exon.6CmaCh04G019860.1.exon.6exon
CmaCh04G019860.1.exon.7CmaCh04G019860.1.exon.7exon


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameType
CmaCh04G019860.1.CDS.1CmaCh04G019860.1.CDS.1CDS
CmaCh04G019860.1.CDS.2CmaCh04G019860.1.CDS.2CDS
CmaCh04G019860.1.CDS.3CmaCh04G019860.1.CDS.3CDS
CmaCh04G019860.1.CDS.4CmaCh04G019860.1.CDS.4CDS
CmaCh04G019860.1.CDS.5CmaCh04G019860.1.CDS.5CDS
CmaCh04G019860.1.CDS.6CmaCh04G019860.1.CDS.6CDS
CmaCh04G019860.1.CDS.7CmaCh04G019860.1.CDS.7CDS


InterPro
Analysis Name: InterPro Annotations of Cucurbita maxima
Date Performed: 2017-05-20
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR001892Ribosomal protein S13PROFILEPS50159RIBOSOMAL_S13_2coord: 26..74
score: 12
IPR010979Ribosomal protein S13-like, H2THunknownSSF46946S13-like H2TH domaincoord: 25..74
score: 5.4
NoneNo IPR availableGENE3DG3DSA:1.10.8.50coord: 27..59
score: 3.
NoneNo IPR availablePANTHERPTHR1087130S RIBOSOMAL PROTEIN S13/40S RIBOSOMAL PROTEIN S18coord: 27..74
score: 2.2
NoneNo IPR availablePANTHERPTHR10871:SF8SUBFAMILY NOT NAMEDcoord: 27..74
score: 2.2