CmaCh04G013380.1 (mRNA) Cucurbita maxima (Rimu)
The following sequences are available for this feature:
Legend: five_prime_UTRexonCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.GAATCAACCAATTCAATCATTCATAACCACAGTGTTCAACAGGGCGCTGCCGCTTTCCCCCCACCCTCTTTCGAACGTTCGTTTAAAACAACAAATTTTCCCCTCTCTCTTTTCTGGGTATTTTGAATCTTTCGATTGGCGTATGGGAAAGGTTAGAAATCTCTGAGATTTTCGTTTTTCCATTAAAAAAATAAACCGATTTTCGGAATTTCGAGGTCAGTGAAGCCGCCCTGCTTGTTTGTTCTTAATTTCTGCCCTTTTTGTTCTTTCTCGAGAAAAATCTCTCTCTTCTGCCCTTCATACGCTCCTCCTCCTCCTCCCCTTTCTCTCTCTCCCATGCTTTAATTTGAATTCTCTCGGCTCCCAAACGCGGTTTTCGCCACATCCCTTTGAGTATTATCATCCCTTTTTGGCGCTGTTTATTGTCGTATCACAATCAAACTTGCCGTCCACCCAGATTCTTTGGTGGGGTTCTGATTATCTTTTGAGGTATTTCATGATTCCCTTCATTTCTTCATGGTGTTTTGAGTTCTTGTGATTTGGGGCTCTTGTATTTCTTTCTGGGATGGTTTTTATAATCGTCCCGAGATGTTTGAGGCCTTCGTTTATGGGATGTTCTTATCTGCATTTTGTTGGGTTTTCTCATTGATCGGTTTACTCTGCGCATTTGTTGTTGTTCTTTAGGCCTCAATGGAGTTCTGGGTTTAGAAATATTGTTTTATGGGTTTAGTTTAGTTTTTCTCTTTGGTAATTGAATTGGTTCCATTGGGAGTTTAGTGTTCATCATGTTCTTACTCTTTTTCTCTTTTCCAATAATCTTTTAGATCATTGAAAAGAATATTGGATAATGATTTGAGATGCTTTCTTTTCTTTGTGTGAATCATCTTTTTGTTAGTTACCCATTGGTTATAGGACGAAACAAGTTGGTTCTCAAACGATCCATCGGGATCCTAATGCATATAGATACAAATGGTCCCATGGGAGCAAGAATTTTTATGAACATTTCATTTATGAGCAGAAGAGCCATTTTCATTTTCAAGGAGTGTTCACTCGATCACATATCCTCATTCATAGGTCCGAGATTCACATCTATGAATTGAAAGTTCCGAATGATCAACTCTGCAATCGGTTGTTAAAATCAATAGGTCTTCAAATCATTCCTAAGTTGTTCTTATTGTATCTTTTCAAAGGTGGTTTTGAAGTTCTTTCTTGTAACTATGGTTGGTCATTTGATATGATGTTTTGGTCAATACTTCTGGGGTAGACCTATGGATTGGCATATGATGTTCTTAATACTTGCAACTTCTTGTTCATACTTTTCCTAATGTTTATGTTTGTAGGCATTTTATTGATAAAAATGTCATCTGCAAATCCTTATTTTGACGACGTTCGGACCAAACCTGAGGTTATTGATCCTCCACAAGATGATGACATGATGGATGTTAGTGAAAGTGTGAGTGATCCTGCTCGAAATGGAGGAAAGCCTAACGTGGTTGTCTCGAGCAGTGTTCGTGAGCTGTTGGAGTGCCCTGTTTGCTTAAATGCTATGTACCCTCCTATACATCAGGTCAGTTTTCATCGTTTAAGACCTTTTGAATGAAATTGTTTACCTATTGGAGAGGAACGCTCAGATACCAAATGATAAAGAATCACCGTAAGAGAAGTAAGATTCAGATTAGCTTGTTGATCGAATATCTTAAGGTAAGAACACTTGTTTGGATGAAGTAGGTGGTGCTAATGATGGAGTAGGTGGTGATGTTTGTTATGGCAAAGGTTTTGGTGGTAGGTTTGGTGGTGAGGTGGGTAGGGGATTTCGTTGGAGGCAGAAAATCGACATTCGGTGTCCCGAAACTTTGAAACTCTTATTAATTATACCATATTATGTACTCTTTGTTATTATTACGACATGAAACTATTCTCAGGGTTATGGAAGAGATTATAAGTAATATAATCCCGAATCTCCTAAAAACTCCTGAAATCTCTTCAAAGATCGTATAAACGATGATTCTTTCCATTCCACAGGTCGCATAGAATTTGTGAGATCCCACATCGATTGGAGAGAGGAACGAGTAACGGTGAGGATGTTGGGTTCCGAAGGGGGTGAATTGTGAGATCCCACATTGGTTGGGGAGGAGAACGAAACATTCTTTATAAGGGTGTCGAAACCTCTCCCTAGTTGTCACGTTTTAAAAACCTTGAGGGGAAGCTCGAAAGGGAAAACTCACAGAGGACAATATTTGCTAGCGGTAGGCTGGGCTGTTACGAAGATGATGATTTTGGCTCTTGTTCCTATACAAAATACACGGGCTTCGTCTGGATTATAATAGCTCGAGAGCTGTCTTCCTTTTAGCCTCAACTGAATGTTCCCCTCGAGTTTATGAATAATGTTATAGATTTTGGGTAGTCTTTGAGAGTACCATGTGTTCTTAGGTCGATTGACTTTCTGTTGTCGCAGTGTTCGAATGGTCACACATTGTGTTCGGGATGCAAGCCGAGGGTGCACAACCGGTGTCCGACCTGCAGGCATGAACTTGGGAATATCAGATGTCTTGCATTAGAGAAGGTGGCTGCATCTCTGGAACTTCCATGTAAATATCAAACTTTTGGATGTGTGGGCATATACCCCTACTATAGCAAGCTGAAACATGAATCTCAATGTGTATATCGACCCTATAACTGTCCTTATGCGGGGTCGGAATGCACGGTTGTTGGTGATATTCCGTTTTTGGTAGCTCACCTCAAGGACGATCACAAAGTCGACATGCACAATGGAAGCACTTTCAATCACCGGTACGTCAAGTCAAATCCGCAAGAAGTCGAAAATGCCACGTGGATGTTAACGGTACTATTCTGCTTTGTCTTATTGTGTCATGTTTTGGTTATTGGCCTGTTGAAACTTGTTCTAGATAGAGGAGGCTTATGAGTTGAGAATAGACAAATAGTGGATGTGTCCAATAGGGGGATCGGATCGAGTTCATAGCTTTGTTATCACTTCAATTTGAGAGGTCGGACACGCACGCAACTGATACCGTTTTTTCTGTTTGATCTCTAGGTTTTCAGCTGTTTTGGTCAATACTTTTGTTTACATTTCGAAGCTTTTCAACTCGGGATGGCACCGGTGTACATAGCTTTCTTGCGGTTTATGGGGGATGATAATGAAGCGAAGAACTACAGTTATAGTCTAGAGGTGGGTGGAAATGGGAGGAAGACGGTGTGGCAAGGAGTGCCACGGAGTATTCGGGACAGTCATCGGAAGGTACGGGACAGTTTTGACGGGCTTATTATCCAACGTAACATGGCGCTGTTCTTCTCGGGGGGAGATGGGAAAGAATTGAAGCTGAGAGTAACTGGTAGGATTTGGAAGGAGCAGTAGTAGTAATGTGTTTGTGTTGTGTGTTGTGTGTTGTATGTTTAGGTGCTTAGAAGAAGAAAGTAAAGTAGAGAGCCTAATTTTATTTTGAAGGCAAACTCTGTGTTTGCTCTGATGGGAATTCAAATACGCGTTCTTCTTACTTGTCTCTTGATTTTTACTTTTTTGCCCCTCCCCCGTCAGACTTGAATTTACATTTTAACCCTTG GAATCAACCAATTCAATCATTCATAACCACAGTGTTCAACAGGGCGCTGCCGCTTTCCCCCCACCCTCTTTCGAACGTTCGTTTAAAACAACAAATTTTCCCCTCTCTCTTTTCTGGGTATTTTGAATCTTTCGATTGGCGTATGGGAAAGGTTAGAAATCTCTGAGATTTTCGTTTTTCCATTAAAAAAATAAACCGATTTTCGGAATTTCGAGGTCAGTGAAGCCGCCCTGCTTGTTTGTTCTTAATTTCTGCCCTTTTTGTTCTTTCTCGAGAAAAATCTCTCTCTTCTGCCCTTCATACGCTCCTCCTCCTCCTCCCCTTTCTCTCTCTCCCATGCTTTAATTTGAATTCTCTCGGCTCCCAAACGCGGTTTTCGCCACATCCCTTTGAGTATTATCATCCCTTTTTGGCGCTGTTTATTGTCGTATCACAATCAAACTTGCCGTCCACCCAGATTCTTTGGTGGGGTTCTGATTATCTTTTGAGGCATTTTATTGATAAAAATGTCATCTGCAAATCCTTATTTTGACGACGTTCGGACCAAACCTGAGGTTATTGATCCTCCACAAGATGATGACATGATGGATGTTAGTGAAAGTGTGAGTGATCCTGCTCGAAATGGAGGAAAGCCTAACGTGGTTGTCTCGAGCAGTGTTCGTGAGCTGTTGGAGTGCCCTGTTTGCTTAAATGCTATGTACCCTCCTATACATCAGTGTTCGAATGGTCACACATTGTGTTCGGGATGCAAGCCGAGGGTGCACAACCGGTGTCCGACCTGCAGGCATGAACTTGGGAATATCAGATGTCTTGCATTAGAGAAGGTGGCTGCATCTCTGGAACTTCCATGTAAATATCAAACTTTTGGATGTGTGGGCATATACCCCTACTATAGCAAGCTGAAACATGAATCTCAATGTGTATATCGACCCTATAACTGTCCTTATGCGGGGTCGGAATGCACGGTTGTTGGTGATATTCCGTTTTTGGTAGCTCACCTCAAGGACGATCACAAAGTCGACATGCACAATGGAAGCACTTTCAATCACCGGTACGTCAAGTCAAATCCGCAAGAAGTCGAAAATGCCACGTGGATGTTAACGGTTTTCAGCTGTTTTGGTCAATACTTTTGTTTACATTTCGAAGCTTTTCAACTCGGGATGGCACCGGTGTACATAGCTTTCTTGCGGTTTATGGGGGATGATAATGAAGCGAAGAACTACAGTTATAGTCTAGAGGTGGGTGGAAATGGGAGGAAGACGGTGTGGCAAGGAGTGCCACGGAGTATTCGGGACAGTCATCGGAAGGTACGGGACAGTTTTGACGGGCTTATTATCCAACGTAACATGGCGCTGTTCTTCTCGGGGGGAGATGGGAAAGAATTGAAGCTGAGAGTAACTGGTAGGATTTGGAAGGAGCAGTAGTAGTAATGTGTTTGTGTTGTGTGTTGTGTGTTGTATGTTTAGGTGCTTAGAAGAAGAAAGTAAAGTAGAGAGCCTAATTTTATTTTGAAGGCAAACTCTGTGTTTGCTCTGATGGGAATTCAAATACGCGTTCTTCTTACTTGTCTCTTGATTTTTACTTTTTTGCCCCTCCCCCGTCAGACTTGAATTTACATTTTAACCCTTG ATGTCATCTGCAAATCCTTATTTTGACGACGTTCGGACCAAACCTGAGGTTATTGATCCTCCACAAGATGATGACATGATGGATGTTAGTGAAAGTGTGAGTGATCCTGCTCGAAATGGAGGAAAGCCTAACGTGGTTGTCTCGAGCAGTGTTCGTGAGCTGTTGGAGTGCCCTGTTTGCTTAAATGCTATGTACCCTCCTATACATCAGTGTTCGAATGGTCACACATTGTGTTCGGGATGCAAGCCGAGGGTGCACAACCGGTGTCCGACCTGCAGGCATGAACTTGGGAATATCAGATGTCTTGCATTAGAGAAGGTGGCTGCATCTCTGGAACTTCCATGTAAATATCAAACTTTTGGATGTGTGGGCATATACCCCTACTATAGCAAGCTGAAACATGAATCTCAATGTGTATATCGACCCTATAACTGTCCTTATGCGGGGTCGGAATGCACGGTTGTTGGTGATATTCCGTTTTTGGTAGCTCACCTCAAGGACGATCACAAAGTCGACATGCACAATGGAAGCACTTTCAATCACCGGTACGTCAAGTCAAATCCGCAAGAAGTCGAAAATGCCACGTGGATGTTAACGGTTTTCAGCTGTTTTGGTCAATACTTTTGTTTACATTTCGAAGCTTTTCAACTCGGGATGGCACCGGTGTACATAGCTTTCTTGCGGTTTATGGGGGATGATAATGAAGCGAAGAACTACAGTTATAGTCTAGAGGTGGGTGGAAATGGGAGGAAGACGGTGTGGCAAGGAGTGCCACGGAGTATTCGGGACAGTCATCGGAAGGTACGGGACAGTTTTGACGGGCTTATTATCCAACGTAACATGGCGCTGTTCTTCTCGGGGGGAGATGGGAAAGAATTGAAGCTGAGAGTAACTGGTAGGATTTGGAAGGAGCAGTAG MSSANPYFDDVRTKPEVIDPPQDDDMMDVSESVSDPARNGGKPNVVVSSSVRELLECPVCLNAMYPPIHQCSNGHTLCSGCKPRVHNRCPTCRHELGNIRCLALEKVAASLELPCKYQTFGCVGIYPYYSKLKHESQCVYRPYNCPYAGSECTVVGDIPFLVAHLKDDHKVDMHNGSTFNHRYVKSNPQEVENATWMLTVFSCFGQYFCLHFEAFQLGMAPVYIAFLRFMGDDNEAKNYSYSLEVGGNGRKTVWQGVPRSIRDSHRKVRDSFDGLIIQRNMALFFSGGDGKELKLRVTGRIWKEQ
BLAST of CmaCh04G013380.1 vs. Swiss-Prot
Match: SINA5_ARATH (E3 ubiquitin-protein ligase SINAT5 OS=Arabidopsis thaliana GN=SINAT5 PE=1 SV=2) HSP 1 Score: 487.6 bits (1254), Expect = 9.6e-137 Identity = 226/289 (78.20%), Postives = 247/289 (85.47%), Query Frame = 1
BLAST of CmaCh04G013380.1 vs. Swiss-Prot
Match: SINA3_ARATH (E3 ubiquitin-protein ligase SINAT3 OS=Arabidopsis thaliana GN=SINAT3 PE=2 SV=1) HSP 1 Score: 479.2 bits (1232), Expect = 3.4e-134 Identity = 215/258 (83.33%), Postives = 236/258 (91.47%), Query Frame = 1
BLAST of CmaCh04G013380.1 vs. Swiss-Prot
Match: SINA4_ARATH (E3 ubiquitin-protein ligase SINAT4 OS=Arabidopsis thaliana GN=SINAT4 PE=2 SV=1) HSP 1 Score: 471.5 bits (1212), Expect = 7.1e-132 Identity = 214/258 (82.95%), Postives = 233/258 (90.31%), Query Frame = 1
BLAST of CmaCh04G013380.1 vs. Swiss-Prot
Match: SINA2_ARATH (E3 ubiquitin-protein ligase SINAT2 OS=Arabidopsis thaliana GN=SINAT2 PE=1 SV=1) HSP 1 Score: 462.2 bits (1188), Expect = 4.3e-129 Identity = 209/265 (78.87%), Postives = 230/265 (86.79%), Query Frame = 1
BLAST of CmaCh04G013380.1 vs. Swiss-Prot
Match: SINA1_ARATH (Putative E3 ubiquitin-protein ligase SINAT1 OS=Arabidopsis thaliana GN=SINAT1 PE=3 SV=1) HSP 1 Score: 453.4 bits (1165), Expect = 2.0e-126 Identity = 205/258 (79.46%), Postives = 225/258 (87.21%), Query Frame = 1
BLAST of CmaCh04G013380.1 vs. TrEMBL
Match: A0A0A0KRN7_CUCSA (E3 ubiquitin-protein ligase OS=Cucumis sativus GN=Csa_5G623730 PE=3 SV=1) HSP 1 Score: 631.7 bits (1628), Expect = 4.6e-178 Identity = 294/305 (96.39%), Postives = 301/305 (98.69%), Query Frame = 1
BLAST of CmaCh04G013380.1 vs. TrEMBL
Match: E5GCK0_CUCME (E3 ubiquitin-protein ligase OS=Cucumis melo subsp. melo PE=3 SV=1) HSP 1 Score: 631.7 bits (1628), Expect = 4.6e-178 Identity = 295/305 (96.72%), Postives = 300/305 (98.36%), Query Frame = 1
BLAST of CmaCh04G013380.1 vs. TrEMBL
Match: A0A067KWI1_JATCU (E3 ubiquitin-protein ligase OS=Jatropha curcas GN=JCGZ_24516 PE=3 SV=1) HSP 1 Score: 614.8 bits (1584), Expect = 5.8e-173 Identity = 283/305 (92.79%), Postives = 297/305 (97.38%), Query Frame = 1
BLAST of CmaCh04G013380.1 vs. TrEMBL
Match: B9RGC2_RICCO (E3 ubiquitin-protein ligase OS=Ricinus communis GN=RCOM_1452850 PE=3 SV=1) HSP 1 Score: 611.3 bits (1575), Expect = 6.4e-172 Identity = 281/305 (92.13%), Postives = 293/305 (96.07%), Query Frame = 1
BLAST of CmaCh04G013380.1 vs. TrEMBL
Match: A5CAJ5_VITVI (E3 ubiquitin-protein ligase OS=Vitis vinifera GN=VIT_13s0139g00150 PE=3 SV=1) HSP 1 Score: 605.5 bits (1560), Expect = 3.5e-170 Identity = 280/305 (91.80%), Postives = 292/305 (95.74%), Query Frame = 1
BLAST of CmaCh04G013380.1 vs. TAIR10
Match: AT3G61790.1 (AT3G61790.1 Protein with RING/U-box and TRAF-like domains) HSP 1 Score: 479.2 bits (1232), Expect = 1.9e-135 Identity = 215/258 (83.33%), Postives = 236/258 (91.47%), Query Frame = 1
BLAST of CmaCh04G013380.1 vs. TAIR10
Match: AT4G27880.1 (AT4G27880.1 Protein with RING/U-box and TRAF-like domains) HSP 1 Score: 471.5 bits (1212), Expect = 4.0e-133 Identity = 214/258 (82.95%), Postives = 233/258 (90.31%), Query Frame = 1
BLAST of CmaCh04G013380.1 vs. TAIR10
Match: AT3G58040.1 (AT3G58040.1 seven in absentia of Arabidopsis 2) HSP 1 Score: 462.2 bits (1188), Expect = 2.4e-130 Identity = 209/265 (78.87%), Postives = 230/265 (86.79%), Query Frame = 1
BLAST of CmaCh04G013380.1 vs. TAIR10
Match: AT2G41980.1 (AT2G41980.1 Protein with RING/U-box and TRAF-like domains) HSP 1 Score: 453.4 bits (1165), Expect = 1.1e-127 Identity = 205/258 (79.46%), Postives = 225/258 (87.21%), Query Frame = 1
BLAST of CmaCh04G013380.1 vs. TAIR10
Match: AT5G53360.1 (AT5G53360.1 TRAF-like superfamily protein) HSP 1 Score: 381.3 bits (978), Expect = 5.5e-106 Identity = 172/204 (84.31%), Postives = 188/204 (92.16%), Query Frame = 1
BLAST of CmaCh04G013380.1 vs. NCBI nr
Match: gi|778706762|ref|XP_011655908.1| (PREDICTED: E3 ubiquitin-protein ligase SINAT5 [Cucumis sativus]) HSP 1 Score: 631.7 bits (1628), Expect = 6.6e-178 Identity = 294/305 (96.39%), Postives = 301/305 (98.69%), Query Frame = 1
BLAST of CmaCh04G013380.1 vs. NCBI nr
Match: gi|659092182|ref|XP_008446940.1| (PREDICTED: E3 ubiquitin-protein ligase SINAT5-like [Cucumis melo]) HSP 1 Score: 631.7 bits (1628), Expect = 6.6e-178 Identity = 295/305 (96.72%), Postives = 300/305 (98.36%), Query Frame = 1
BLAST of CmaCh04G013380.1 vs. NCBI nr
Match: gi|802574062|ref|XP_012068638.1| (PREDICTED: E3 ubiquitin-protein ligase SINAT5-like isoform X2 [Jatropha curcas]) HSP 1 Score: 614.8 bits (1584), Expect = 8.3e-173 Identity = 283/305 (92.79%), Postives = 297/305 (97.38%), Query Frame = 1
BLAST of CmaCh04G013380.1 vs. NCBI nr
Match: gi|802574058|ref|XP_012068636.1| (PREDICTED: E3 ubiquitin-protein ligase SINAT5-like isoform X1 [Jatropha curcas]) HSP 1 Score: 614.8 bits (1584), Expect = 8.3e-173 Identity = 283/305 (92.79%), Postives = 297/305 (97.38%), Query Frame = 1
BLAST of CmaCh04G013380.1 vs. NCBI nr
Match: gi|1000979549|ref|XP_015570744.1| (PREDICTED: E3 ubiquitin-protein ligase SINAT5 isoform X1 [Ricinus communis]) HSP 1 Score: 611.3 bits (1575), Expect = 9.2e-172 Identity = 281/305 (92.13%), Postives = 293/305 (96.07%), Query Frame = 1
The following BLAST results are available for this feature:
The following terms have been associated with this mRNA:
GO Assignments
This mRNA is annotated with the following GO terms.
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following three_prime_UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following five_prime_UTR feature(s) are a part of this mRNA:
The following exon feature(s) are a part of this mRNA:
Analysis Name: InterPro Annotations of Cucurbita maxima
Date Performed: 2017-05-20
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