CmaCh04G007730.1 (mRNA) Cucurbita maxima (Rimu)
The following sequences are available for this feature:
Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.ATTTGATACCAAAAGAACCGCGAGAGAGAGAATGAACCAGCAAGAAAGTGAAGAGCATGAAGCAGTACAAATCTGTGAGTTGTACACTCCATTATACATCCAAATGGTTCCCCAACAACAAGGTTTCTACACTCTTCTTTTAACTTTACCCATTACTCTAATTTTTAATTCATTTTTTGCTTCGATTTTGATTCTCTCTCTCAATGTAACGGATGCTTGGTTTTGGTTACAGATAATAATTTGGGTGAAGCAAAACGGAGACGACGTCGTAAGAAGAACAGAGGATCGGAAGCGGATGCGGTGGCAAAGAAGAGGAAGCTCACAGCCGCGCAGGTTCATCTTTTGGAGACTCATTTTGGGAGTGAACATAAGTTGGAGTCGGAAAGAAAGGACCGTCTAGCGTCCGAGTTGGGGCTCGATCCTCGCCAGGTCGCCGTCTGGTTTCAGAACCGCCGTGCCCGCTGGAAGAACAAGAAACTTGAGGAGGAATATTCTAGCTTGAAGAAGCTTCATGAATCCGTCGTCGTTGAGAAATGCCGTCTTGAAACTCAGGTCCATTTTCATCCTTTCTCTCTCTCTCTCTCTCGTGCTGGTTTTCGTCTTTCCAAACACAACCAAACATTTTCTATTATTATTTTATAATTCAATATAATAATAATTATATTTTAAAAAAATAATTTTAAAGTTAGTTAATAAGACATTTATTATTTTTCAAAATTTGTAACTGAATAGAGTAAAATCTATGTTGGCTAAATTTTTATATTTAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAACAGAGGAATTTGAGAACATCTCCCTCCATCAACCGAAAGGTGTTATTAGAGGAGAAAAAGCTTGGTAACTTTGGGTGATAAAGAGAGGGTGGGACACCATTTATGAACGAACGTGCATGGGCTCTGGGCTCGAAGAAGCCCACGCCACCTTCTTCAAAATATGTTTTTGTTTTTTTTTTCTTTTTACGAAAATAATAAAACTTTCCATGACCCAATTGCCTTACTACAACCATCTCATTCGACAATAAAAGTCCTTTTTAAAAAACAAACAAAAAAACTTAAGTTATAAAAGTAATAAATATAAAGTGTTTCGTACAACGTTGTCCGTGTTTCTATGGGCTTTGGTCGCCCTCACTTCTACATTGCACCAATCAAGACTCAACAACACCCATGGGACTTAGTTTTGTTTGGTTAAGCAAAAAGTAAGGTTAATTTGTTGGTGATGATTTTACAGATACTGAAGCTGAAAGAACAACTTTCAGAAGTGGAGAAAGAAAAGGAGAGGCAGACAATGGGAGAACGGGGAGATGGGCCTTTAAGCAGCAGCAGCCCAAGCCCATCGATGTCAATGGACGCCGTGGACCCCACAGGCCTTGAGGAATTTGGAGCATCATTCGAAGATGTGTTTTATTACATGCCTGAAAACTCTTGCATTTATGGCATGGAATGGCCCAATCCCTATATTTGATATTTATATTTTAGTTTTACCAATAATTCCATCTTAATTTATAAATGTATTATGCCTTTTCTTTTGTATAAAATTTATGAATCTAGTGTAAATCCTAATTTTCCC ATTTGATACCAAAAGAACCGCGAGAGAGAGAATGAACCAGCAAGAAAGTGAAGAGCATGAAGCAGTACAAATCTGTGAGTTGTACACTCCATTATACATCCAAATGGTTCCCCAACAACAAGATAATAATTTGGGTGAAGCAAAACGGAGACGACGTCGTAAGAAGAACAGAGGATCGGAAGCGGATGCGGTGGCAAAGAAGAGGAAGCTCACAGCCGCGCAGGTTCATCTTTTGGAGACTCATTTTGGGAGTGAACATAAGTTGGAGTCGGAAAGAAAGGACCGTCTAGCGTCCGAGTTGGGGCTCGATCCTCGCCAGGTCGCCGTCTGGTTTCAGAACCGCCGTGCCCGCTGGAAGAACAAGAAACTTGAGGAGGAATATTCTAGCTTGAAGAAGCTTCATGAATCCGTCGTCGTTGAGAAATGCCGTCTTGAAACTCAGATACTGAAGCTGAAAGAACAACTTTCAGAAGTGGAGAAAGAAAAGGAGAGGCAGACAATGGGAGAACGGGGAGATGGGCCTTTAAGCAGCAGCAGCCCAAGCCCATCGATGTCAATGGACGCCGTGGACCCCACAGGCCTTGAGGAATTTGGAGCATCATTCGAAGATGTGTTTTATTACATGCCTGAAAACTCTTGCATTTATGGCATGGAATGGCCCAATCCCTATATTTGATATTTATATTTTAGTTTTACCAATAATTCCATCTTAATTTATAAATGTATTATGCCTTTTCTTTTGTATAAAATTTATGAATCTAGTGTAAATCCTAATTTTCCC ATGAACCAGCAAGAAAGTGAAGAGCATGAAGCAGTACAAATCTGTGAGTTGTACACTCCATTATACATCCAAATGGTTCCCCAACAACAAGATAATAATTTGGGTGAAGCAAAACGGAGACGACGTCGTAAGAAGAACAGAGGATCGGAAGCGGATGCGGTGGCAAAGAAGAGGAAGCTCACAGCCGCGCAGGTTCATCTTTTGGAGACTCATTTTGGGAGTGAACATAAGTTGGAGTCGGAAAGAAAGGACCGTCTAGCGTCCGAGTTGGGGCTCGATCCTCGCCAGGTCGCCGTCTGGTTTCAGAACCGCCGTGCCCGCTGGAAGAACAAGAAACTTGAGGAGGAATATTCTAGCTTGAAGAAGCTTCATGAATCCGTCGTCGTTGAGAAATGCCGTCTTGAAACTCAGATACTGAAGCTGAAAGAACAACTTTCAGAAGTGGAGAAAGAAAAGGAGAGGCAGACAATGGGAGAACGGGGAGATGGGCCTTTAAGCAGCAGCAGCCCAAGCCCATCGATGTCAATGGACGCCGTGGACCCCACAGGCCTTGAGGAATTTGGAGCATCATTCGAAGATGTGTTTTATTACATGCCTGAAAACTCTTGCATTTATGGCATGGAATGGCCCAATCCCTATATTTGA MNQQESEEHEAVQICELYTPLYIQMVPQQQDNNLGEAKRRRRRKKNRGSEADAVAKKRKLTAAQVHLLETHFGSEHKLESERKDRLASELGLDPRQVAVWFQNRRARWKNKKLEEEYSSLKKLHESVVVEKCRLETQILKLKEQLSEVEKEKERQTMGERGDGPLSSSSPSPSMSMDAVDPTGLEEFGASFEDVFYYMPENSCIYGMEWPNPYI
BLAST of CmaCh04G007730.1 vs. Swiss-Prot
Match: ATB40_ARATH (Homeobox-leucine zipper protein ATHB-40 OS=Arabidopsis thaliana GN=ATHB-40 PE=2 SV=3) HSP 1 Score: 179.5 bits (454), Expect = 3.9e-44 Identity = 113/225 (50.22%), Postives = 154/225 (68.44%), Query Frame = 1
BLAST of CmaCh04G007730.1 vs. Swiss-Prot
Match: ATB21_ARATH (Homeobox-leucine zipper protein ATHB-21 OS=Arabidopsis thaliana GN=ATHB-21 PE=2 SV=1) HSP 1 Score: 163.7 bits (413), Expect = 2.2e-39 Identity = 104/228 (45.61%), Postives = 145/228 (63.60%), Query Frame = 1
BLAST of CmaCh04G007730.1 vs. Swiss-Prot
Match: ATB53_ARATH (Homeobox-leucine zipper protein ATHB-53 OS=Arabidopsis thaliana GN=ATHB-53 PE=2 SV=1) HSP 1 Score: 147.9 bits (372), Expect = 1.3e-34 Identity = 91/187 (48.66%), Postives = 131/187 (70.05%), Query Frame = 1
BLAST of CmaCh04G007730.1 vs. Swiss-Prot
Match: HOX12_ORYSJ (Homeobox-leucine zipper protein HOX12 OS=Oryza sativa subsp. japonica GN=HOX12 PE=2 SV=1) HSP 1 Score: 117.1 bits (292), Expect = 2.4e-25 Identity = 83/183 (45.36%), Postives = 111/183 (60.66%), Query Frame = 1
BLAST of CmaCh04G007730.1 vs. Swiss-Prot
Match: HOX12_ORYSI (Homeobox-leucine zipper protein HOX12 OS=Oryza sativa subsp. indica GN=HOX12 PE=2 SV=1) HSP 1 Score: 117.1 bits (292), Expect = 2.4e-25 Identity = 83/183 (45.36%), Postives = 111/183 (60.66%), Query Frame = 1
BLAST of CmaCh04G007730.1 vs. TrEMBL
Match: A0A0A0KWL3_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_4G043850 PE=4 SV=1) HSP 1 Score: 310.1 bits (793), Expect = 2.1e-81 Identity = 171/221 (77.38%), Postives = 192/221 (86.88%), Query Frame = 1
BLAST of CmaCh04G007730.1 vs. TrEMBL
Match: W9RLH1_9ROSA (Homeobox-leucine zipper protein ATHB-40 OS=Morus notabilis GN=L484_009043 PE=4 SV=1) HSP 1 Score: 233.0 bits (593), Expect = 3.3e-58 Identity = 135/218 (61.93%), Postives = 170/218 (77.98%), Query Frame = 1
BLAST of CmaCh04G007730.1 vs. TrEMBL
Match: A0A067KIZ9_JATCU (Uncharacterized protein OS=Jatropha curcas GN=JCGZ_12260 PE=4 SV=1) HSP 1 Score: 229.9 bits (585), Expect = 2.8e-57 Identity = 134/205 (65.37%), Postives = 157/205 (76.59%), Query Frame = 1
BLAST of CmaCh04G007730.1 vs. TrEMBL
Match: A0A068U2N9_COFCA (Uncharacterized protein OS=Coffea canephora GN=GSCOC_T00040311001 PE=4 SV=1) HSP 1 Score: 222.2 bits (565), Expect = 5.9e-55 Identity = 130/208 (62.50%), Postives = 159/208 (76.44%), Query Frame = 1
BLAST of CmaCh04G007730.1 vs. TrEMBL
Match: A0A061DFY2_THECC (Homeobox protein, putative OS=Theobroma cacao GN=TCM_000438 PE=4 SV=1) HSP 1 Score: 217.6 bits (553), Expect = 1.4e-53 Identity = 129/213 (60.56%), Postives = 158/213 (74.18%), Query Frame = 1
BLAST of CmaCh04G007730.1 vs. TAIR10
Match: AT4G36740.1 (AT4G36740.1 homeobox protein 40) HSP 1 Score: 179.5 bits (454), Expect = 2.2e-45 Identity = 113/225 (50.22%), Postives = 154/225 (68.44%), Query Frame = 1
BLAST of CmaCh04G007730.1 vs. TAIR10
Match: AT2G18550.1 (AT2G18550.1 homeobox protein 21) HSP 1 Score: 163.7 bits (413), Expect = 1.3e-40 Identity = 104/228 (45.61%), Postives = 145/228 (63.60%), Query Frame = 1
BLAST of CmaCh04G007730.1 vs. TAIR10
Match: AT5G66700.1 (AT5G66700.1 homeobox 53) HSP 1 Score: 147.9 bits (372), Expect = 7.1e-36 Identity = 91/187 (48.66%), Postives = 131/187 (70.05%), Query Frame = 1
BLAST of CmaCh04G007730.1 vs. TAIR10
Match: AT3G01470.1 (AT3G01470.1 homeobox 1) HSP 1 Score: 97.1 bits (240), Expect = 1.4e-20 Identity = 52/97 (53.61%), Postives = 69/97 (71.13%), Query Frame = 1
BLAST of CmaCh04G007730.1 vs. TAIR10
Match: AT2G22430.1 (AT2G22430.1 homeobox protein 6) HSP 1 Score: 87.8 bits (216), Expect = 8.8e-18 Identity = 45/72 (62.50%), Postives = 56/72 (77.78%), Query Frame = 1
BLAST of CmaCh04G007730.1 vs. NCBI nr
Match: gi|659107539|ref|XP_008453727.1| (PREDICTED: homeobox-leucine zipper protein ATHB-40 [Cucumis melo]) HSP 1 Score: 323.2 bits (827), Expect = 3.5e-85 Identity = 175/219 (79.91%), Postives = 193/219 (88.13%), Query Frame = 1
BLAST of CmaCh04G007730.1 vs. NCBI nr
Match: gi|449457492|ref|XP_004146482.1| (PREDICTED: homeobox-leucine zipper protein ATHB-40-like [Cucumis sativus]) HSP 1 Score: 310.1 bits (793), Expect = 3.1e-81 Identity = 171/221 (77.38%), Postives = 192/221 (86.88%), Query Frame = 1
BLAST of CmaCh04G007730.1 vs. NCBI nr
Match: gi|703111325|ref|XP_010099829.1| (Homeobox-leucine zipper protein ATHB-40 [Morus notabilis]) HSP 1 Score: 233.0 bits (593), Expect = 4.8e-58 Identity = 135/218 (61.93%), Postives = 170/218 (77.98%), Query Frame = 1
BLAST of CmaCh04G007730.1 vs. NCBI nr
Match: gi|643721920|gb|KDP31799.1| (hypothetical protein JCGZ_12260 [Jatropha curcas]) HSP 1 Score: 229.9 bits (585), Expect = 4.0e-57 Identity = 134/205 (65.37%), Postives = 157/205 (76.59%), Query Frame = 1
BLAST of CmaCh04G007730.1 vs. NCBI nr
Match: gi|802640916|ref|XP_012079075.1| (PREDICTED: homeobox-leucine zipper protein ATHB-40 [Jatropha curcas]) HSP 1 Score: 229.9 bits (585), Expect = 4.0e-57 Identity = 134/205 (65.37%), Postives = 157/205 (76.59%), Query Frame = 1
The following BLAST results are available for this feature:
The following terms have been associated with this mRNA:
GO Assignments
This mRNA is annotated with the following GO terms.
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following exon feature(s) are a part of this mRNA:
The following five_prime_UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following three_prime_UTR feature(s) are a part of this mRNA:
Analysis Name: InterPro Annotations of Cucurbita maxima
Date Performed: 2017-05-20
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