CmaCh03G014180.1 (mRNA) Cucurbita maxima (Rimu) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CmaCh03G014180.1
Type	mRNA
Organism	Cucurbita maxima (Cucurbita maxima (Rimu))
Description	Electron carrier/ protein disulfide oxidoreductase
Location	Cma_Chr03 : 8891484 .. 8891828 (+)
Sequence length	345

Genome Viewer

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGAAATGGAATTAGCGAACCCTTACGAGGTGGTCCGGCAGCTGGCGGAGTGCAATGCGGTGGTTGTGTTCAGCATCAGCGGCTGCTGCATGTGCACCGTCGTCAAGCGTCTCCTCTTCGGCCTCGGCGTCGGCCCCACCGTCGTCGAACTCGACCACCTCTCCCACCCTTCCGCCGACGACATTCAAGCCGTCCTCCACCACCTCCTCCCCCACCAGCCCCACCCCATCCCCGCCGTGTTCGTCGGCGGCAAGTTCCTCGGCGGCCTCGACACCCTCATGTCTTCTCACATCAATGGCTCCCTCGTCCCACTCCTGAAGCAAGCCGGCGCTCTCTGGCTCTGA

mRNA sequence

ATGGAAATGGAATTAGCGAACCCTTACGAGGTGGTCCGGCAGCTGGCGGAGTGCAATGCGGTGGTTGTGTTCAGCATCAGCGGCTGCTGCATGTGCACCGTCGTCAAGCGTCTCCTCTTCGGCCTCGGCGTCGGCCCCACCGTCGTCGAACTCGACCACCTCTCCCACCCTTCCGCCGACGACATTCAAGCCGTCCTCCACCACCTCCTCCCCCACCAGCCCCACCCCATCCCCGCCGTGTTCGTCGGCGGCAAGTTCCTCGGCGGCCTCGACACCCTCATGTCTTCTCACATCAATGGCTCCCTCGTCCCACTCCTGAAGCAAGCCGGCGCTCTCTGGCTCTGA

Coding sequence (CDS)

ATGGAAATGGAATTAGCGAACCCTTACGAGGTGGTCCGGCAGCTGGCGGAGTGCAATGCGGTGGTTGTGTTCAGCATCAGCGGCTGCTGCATGTGCACCGTCGTCAAGCGTCTCCTCTTCGGCCTCGGCGTCGGCCCCACCGTCGTCGAACTCGACCACCTCTCCCACCCTTCCGCCGACGACATTCAAGCCGTCCTCCACCACCTCCTCCCCCACCAGCCCCACCCCATCCCCGCCGTGTTCGTCGGCGGCAAGTTCCTCGGCGGCCTCGACACCCTCATGTCTTCTCACATCAATGGCTCCCTCGTCCCACTCCTGAAGCAAGCCGGCGCTCTCTGGCTCTGA

Protein sequence

MEMELANPYEVVRQLAECNAVVVFSISGCCMCTVVKRLLFGLGVGPTVVELDHLSHPSADDIQAVLHHLLPHQPHPIPAVFVGGKFLGGLDTLMSSHINGSLVPLLKQAGALWL

Homology

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BLAST of CmaCh03G014180.1 vs. Swiss-Prot
Match: GRXC9_ORYSJ (Glutaredoxin-C9 OS=Oryza sativa subsp. japonica GN=GRXC9 PE=3 SV=1)

HSP 1 Score: 139.0 bits (349), Expect = 3.1e-32
Identity = 71/106 (66.98%), Postives = 82/106 (77.36%), Query Frame = 1


Query: 9   YEVVRQLAECNAVVVFSISGCCMCTVVKRLLFGLGVGPTVVELDHLSHPSADDIQAVLHH 68
           YE V ++A  NAVVVFS SGCCMC VVKRLL GLGVGP V ELD L+  +A DIQA L  
Sbjct: 89  YERVARMASGNAVVVFSASGCCMCHVVKRLLLGLGVGPAVYELDQLA--AAADIQAALSQ 148

Query: 69  LLPHQPHPIPAVFVGGKFLGGLDTLMSSHINGSLVPLLKQAGALWL 115
           LLP    P+P VFVGG+ LGG++ +M+ HING+LVPLLKQAGALWL
Sbjct: 149 LLPPGQPPVPVVFVGGRLLGGVEKVMACHINGTLVPLLKQAGALWL 192

[Close]

BLAST of CmaCh03G014180.1 vs. Swiss-Prot
Match: GRXC7_ARATH (Glutaredoxin-C7 OS=Arabidopsis thaliana GN=GRXC7 PE=1 SV=2)

HSP 1 Score: 111.3 bits (277), Expect = 7.0e-24
Identity = 59/107 (55.14%), Postives = 70/107 (65.42%), Query Frame = 1


Query: 12  VRQLAECNAVVVFSISGCCMCTVVKRLLFGLGVGPTVVELDHLSHPSADDIQAVLHHLL- 71
           +  LA  +AVV+FS+S CCMC  VK L  G+GV P V ELD   HP   DIQ  L  LL 
Sbjct: 32  IESLASESAVVIFSVSTCCMCHAVKGLFRGMGVSPAVHELD--LHPYGGDIQRALIRLLG 91

Query: 72  ---PHQPHPIPAVFVGGKFLGGLDTLMSSHINGSLVPLLKQAGALWL 115
                 P  +P VF+GGK +G +D +M+SHINGSLVPLLK AGALWL
Sbjct: 92  CSGSSSPGSLPVVFIGGKLVGAMDRVMASHINGSLVPLLKDAGALWL 136

[Close]

BLAST of CmaCh03G014180.1 vs. Swiss-Prot
Match: GRXC3_ORYSJ (Glutaredoxin-C3 OS=Oryza sativa subsp. japonica GN=GRXC3 PE=2 SV=1)

HSP 1 Score: 109.4 bits (272), Expect = 2.7e-23
Identity = 57/109 (52.29%), Postives = 74/109 (67.89%), Query Frame = 1


Query: 12  VRQLAECNAVVVFSISGCCMCTVVKRLLFGLGVGPTVVELDHLSHPSADDIQAVLHHLLP 71
           V +LA  +AVVVFS+S CCMC  VKRL  G+GV PTV ELD    P   +++  L  L+ 
Sbjct: 29  VERLASESAVVVFSVSSCCMCHAVKRLFCGMGVHPTVHELD--LDPRGRELERALARLVG 88

Query: 72  H------QPHPIPAVFVGGKFLGGLDTLMSSHINGSLVPLLKQAGALWL 115
           +       P  +P VF+GGK +G +D +M++HINGSLVPLLK+AGALWL
Sbjct: 89  YGGPAAASPPVVPVVFIGGKLVGAMDRVMAAHINGSLVPLLKEAGALWL 135

[Close]

BLAST of CmaCh03G014180.1 vs. Swiss-Prot
Match: GRXC5_ORYSJ (Glutaredoxin-C5 OS=Oryza sativa subsp. japonica GN=GRXC5 PE=2 SV=2)

HSP 1 Score: 106.3 bits (264), Expect = 2.2e-22
Identity = 57/108 (52.78%), Postives = 72/108 (66.67%), Query Frame = 1


Query: 10  EVVRQLAECNAVVVFSISGCCMCTVVKRLLFGLGVGPTVVELDHLSHPSADDIQAVLHHL 69
           E V +LA  +AVVVFS+S CCMC  VKRL  G+GV P V ELD    P   D++  L  L
Sbjct: 30  ERVERLASESAVVVFSVSSCCMCHAVKRLFCGMGVHPAVHELD--LDPRGRDLERALARL 89

Query: 70  LPH---QPHPIPAVFVGGKFLGGLDTLMSSHINGSLVPLLKQAGALWL 115
           +         +P VF+GGK +G +D +M++HINGSLVPLLK+AGALWL
Sbjct: 90  VGAGGAAAAAVPVVFIGGKLVGAMDRVMAAHINGSLVPLLKEAGALWL 135

[Close]

BLAST of CmaCh03G014180.1 vs. Swiss-Prot
Match: GRXC8_ARATH (Glutaredoxin-C8 OS=Arabidopsis thaliana GN=GRXC8 PE=1 SV=2)

HSP 1 Score: 105.5 bits (262), Expect = 3.8e-22
Identity = 56/109 (51.38%), Postives = 70/109 (64.22%), Query Frame = 1


Query: 12  VRQLAECNAVVVFSISGCCMCTVVKRLLFGLGVGPTVVELDHLSHPSADDIQAVLHHLL- 71
           +  +A  NAVV+FS+S CCMC  +KRL  G+GV P V ELD L  P   +I   L  LL 
Sbjct: 34  IESMAAENAVVIFSVSTCCMCHAIKRLFRGMGVSPAVHELDLL--PYGVEIHRALLRLLG 93

Query: 72  -----PHQPHPIPAVFVGGKFLGGLDTLMSSHINGSLVPLLKQAGALWL 115
                   P  +P VF+GGK +G ++ +M+SHINGSLVPLLK AGALWL
Sbjct: 94  CSSGGATSPGALPVVFIGGKMVGAMERVMASHINGSLVPLLKDAGALWL 140

[Close]

BLAST of CmaCh03G014180.1 vs. TrEMBL
Match: A0A0A0KI63_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_6G524040 PE=4 SV=1)

HSP 1 Score: 228.0 bits (580), Expect = 5.7e-57
Identity = 112/116 (96.55%), Postives = 114/116 (98.28%), Query Frame = 1


Query: 1   MEMELAN--PYEVVRQLAECNAVVVFSISGCCMCTVVKRLLFGLGVGPTVVELDHLSHPS 60
           MEMELAN  P+EVVRQLAECNAVVVFSISGCCMCTVVKRLLFGLGVGPTVVELDHLSHPS
Sbjct: 1   MEMELANHRPFEVVRQLAECNAVVVFSISGCCMCTVVKRLLFGLGVGPTVVELDHLSHPS 60

Query: 61  ADDIQAVLHHLLPHQPHPIPAVFVGGKFLGGLDTLMSSHINGSLVPLLKQAGALWL 115
           ADDIQAVLHHLLPHQPHPIPAVFVGGKFLGGL+TLMSSHINGSLVPLLKQAGALWL
Sbjct: 61  ADDIQAVLHHLLPHQPHPIPAVFVGGKFLGGLETLMSSHINGSLVPLLKQAGALWL 116

[Close]

BLAST of CmaCh03G014180.1 vs. TrEMBL
Match: A0A061GDL6_THECC (Glutaredoxin family protein (Fragment) OS=Theobroma cacao GN=TCM_029438 PE=4 SV=1)

HSP 1 Score: 166.8 bits (421), Expect = 1.6e-38
Identity = 80/111 (72.07%), Postives = 93/111 (83.78%), Query Frame = 1


Query: 3   MELANPYEVVRQLAECNAVVVFSISGCCMCTVVKRLLFGLGVGPTVVELDHLSHPSADDI 62
           M+L NPY++VRQLA  NAVV+FS+SGCCMCTV KRLLFGLGVGPT++ELDH  H S  DI
Sbjct: 15  MKLDNPYQIVRQLASTNAVVLFSMSGCCMCTVAKRLLFGLGVGPTIIELDH--HVSGPDI 74

Query: 63  QAVLHHLLPHQPHPIPAVFVGGKFLGGLDTLMSSHINGSLVPLLKQAGALW 114
           QAVL  L      P+PAVFVGGKFLGG++TLM+ HING+LVPLLK+AGALW
Sbjct: 75  QAVLFQLAADGRQPVPAVFVGGKFLGGIETLMACHINGTLVPLLKEAGALW 123

[Close]

BLAST of CmaCh03G014180.1 vs. TrEMBL
Match: A0A0D2TQJ4_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_009G153500 PE=4 SV=1)

HSP 1 Score: 166.4 bits (420), Expect = 2.0e-38
Identity = 80/112 (71.43%), Postives = 94/112 (83.93%), Query Frame = 1


Query: 3   MELANPYEVVRQLAECNAVVVFSISGCCMCTVVKRLLFGLGVGPTVVELDHLSHPSADDI 62
           M L NPY++VRQLA  NAVV+FS+SGCCMCTV KRLLFGLGVGPT++ELDH  H +  DI
Sbjct: 26  MMLDNPYKIVRQLASTNAVVLFSMSGCCMCTVAKRLLFGLGVGPTIIELDH--HGAGPDI 85

Query: 63  QAVLHHLLPHQPHPIPAVFVGGKFLGGLDTLMSSHINGSLVPLLKQAGALWL 115
           QAVL  L+     P+PAVFVGGKFLGG++TLM+ HING+LVPLLK+AGALWL
Sbjct: 86  QAVLFQLVADGRQPVPAVFVGGKFLGGIETLMACHINGTLVPLLKEAGALWL 135

[Close]

BLAST of CmaCh03G014180.1 vs. TrEMBL
Match: A0A067KPD5_JATCU (Uncharacterized protein OS=Jatropha curcas GN=JCGZ_04645 PE=4 SV=1)

HSP 1 Score: 165.2 bits (417), Expect = 4.5e-38
Identity = 78/111 (70.27%), Postives = 92/111 (82.88%), Query Frame = 1


Query: 4   ELANPYEVVRQLAECNAVVVFSISGCCMCTVVKRLLFGLGVGPTVVELDHLSHPSADDIQ 63
           EL NPYE+VRQ+A  NAVV+FS+SGCCMCTV KRLLFGLGVGPT++E+DH  H S  DIQ
Sbjct: 23  ELENPYEMVRQMASSNAVVLFSMSGCCMCTVAKRLLFGLGVGPTIIEVDH--HSSGPDIQ 82

Query: 64  AVLHHLLPHQPHPIPAVFVGGKFLGGLDTLMSSHINGSLVPLLKQAGALWL 115
           AVL  +      P+PA+FVGGKFLGG++TLM+ HING+LVPLLK AGALWL
Sbjct: 83  AVLFQISSDGQQPVPAIFVGGKFLGGIETLMACHINGTLVPLLKDAGALWL 131

[Close]

BLAST of CmaCh03G014180.1 vs. TrEMBL
Match: B9S0W9_RICCO (Glutaredoxin, grx, putative OS=Ricinus communis GN=RCOM_0630390 PE=4 SV=1)

HSP 1 Score: 162.2 bits (409), Expect = 3.8e-37
Identity = 77/111 (69.37%), Postives = 90/111 (81.08%), Query Frame = 1


Query: 4   ELANPYEVVRQLAECNAVVVFSISGCCMCTVVKRLLFGLGVGPTVVELDHLSHPSADDIQ 63
           +L NPY++VR LA  NAVV+FS+SGCCMCTV KRLLFGLGVGPT+ ELDH  H +  DIQ
Sbjct: 19  QLDNPYQIVRHLASSNAVVLFSMSGCCMCTVAKRLLFGLGVGPTIFELDH--HSAGHDIQ 78

Query: 64  AVLHHLLPHQPHPIPAVFVGGKFLGGLDTLMSSHINGSLVPLLKQAGALWL 115
           AVL  L      P+PA+FVGGKFLGG++TLM+ HING+LVPLLK AGALWL
Sbjct: 79  AVLFQLASEGQQPVPAIFVGGKFLGGIETLMACHINGTLVPLLKDAGALWL 127

[Close]

BLAST of CmaCh03G014180.1 vs. TAIR10
Match: AT3G02000.1 (AT3G02000.1 Thioredoxin superfamily protein)

HSP 1 Score: 111.3 bits (277), Expect = 3.9e-25
Identity = 59/107 (55.14%), Postives = 70/107 (65.42%), Query Frame = 1


Query: 12  VRQLAECNAVVVFSISGCCMCTVVKRLLFGLGVGPTVVELDHLSHPSADDIQAVLHHLL- 71
           +  LA  +AVV+FS+S CCMC  VK L  G+GV P V ELD   HP   DIQ  L  LL 
Sbjct: 32  IESLASESAVVIFSVSTCCMCHAVKGLFRGMGVSPAVHELD--LHPYGGDIQRALIRLLG 91

Query: 72  ---PHQPHPIPAVFVGGKFLGGLDTLMSSHINGSLVPLLKQAGALWL 115
                 P  +P VF+GGK +G +D +M+SHINGSLVPLLK AGALWL
Sbjct: 92  CSGSSSPGSLPVVFIGGKLVGAMDRVMASHINGSLVPLLKDAGALWL 136

[Close]

BLAST of CmaCh03G014180.1 vs. TAIR10
Match: AT5G14070.1 (AT5G14070.1 Thioredoxin superfamily protein)

HSP 1 Score: 105.5 bits (262), Expect = 2.2e-23
Identity = 56/109 (51.38%), Postives = 70/109 (64.22%), Query Frame = 1


Query: 12  VRQLAECNAVVVFSISGCCMCTVVKRLLFGLGVGPTVVELDHLSHPSADDIQAVLHHLL- 71
           +  +A  NAVV+FS+S CCMC  +KRL  G+GV P V ELD L  P   +I   L  LL 
Sbjct: 34  IESMAAENAVVIFSVSTCCMCHAIKRLFRGMGVSPAVHELDLL--PYGVEIHRALLRLLG 93

Query: 72  -----PHQPHPIPAVFVGGKFLGGLDTLMSSHINGSLVPLLKQAGALWL 115
                   P  +P VF+GGK +G ++ +M+SHINGSLVPLLK AGALWL
Sbjct: 94  CSSGGATSPGALPVVFIGGKMVGAMERVMASHINGSLVPLLKDAGALWL 140

[Close]

BLAST of CmaCh03G014180.1 vs. TAIR10
Match: AT1G28480.1 (AT1G28480.1 Thioredoxin superfamily protein)

HSP 1 Score: 100.1 bits (248), Expect = 9.1e-22
Identity = 52/108 (48.15%), Postives = 71/108 (65.74%), Query Frame = 1


Query: 10  EVVRQLAECNAVVVFSISGCCMCTVVKRLLFGLGVGPTVVELDHLSHPSADDIQAVLHHL 69
           E VR + E NAV+V    GCCMC VV+RLL GLGV P V+E+D       D++ + L ++
Sbjct: 33  ERVRMVVEENAVIVIGRRGCCMCHVVRRLLLGLGVNPAVLEIDE---EREDEVLSELENI 92

Query: 70  LPHQPH---PIPAVFVGGKFLGGLDTLMSSHINGSLVPLLKQAGALWL 115
                     +PAV+VGG+  GGLD +M++HI+G LVP+LK+ GALWL
Sbjct: 93  GVQGGGGTVKLPAVYVGGRLFGGLDRVMATHISGELVPILKEVGALWL 137

[Close]

BLAST of CmaCh03G014180.1 vs. TAIR10
Match: AT3G21460.1 (AT3G21460.1 Glutaredoxin family protein)

HSP 1 Score: 91.7 bits (226), Expect = 3.2e-19
Identity = 52/105 (49.52%), Postives = 68/105 (64.76%), Query Frame = 1


Query: 10  EVVRQLAECNAVVVFSISGCCMCTVVKRLLFGLGVGPTVVELDHLSHPSADDIQAVLHHL 69
           +VV +LA   AVV+FS S CCM   +KRL +  GV P +VE+D   +    DI+  L  L
Sbjct: 2   DVVARLASQRAVVIFSKSTCCMSHAIKRLFYEQGVSPAIVEIDQDMY--GKDIEWALARL 61

Query: 70  LPHQPHPIPAVFVGGKFLGGLDTLMSSHINGSLVPLLKQAGALWL 115
                  +PAVFVGGKF+G  +T+M+ H+NGSL  LLK+AGALWL
Sbjct: 62  --GCSPTVPAVFVGGKFVGTANTVMTLHLNGSLKILLKEAGALWL 102

[Close]

BLAST of CmaCh03G014180.1 vs. TAIR10
Match: AT4G15700.1 (AT4G15700.1 Thioredoxin superfamily protein)

HSP 1 Score: 85.1 bits (209), Expect = 3.0e-17
Identity = 45/106 (42.45%), Postives = 66/106 (62.26%), Query Frame = 1


Query: 10  EVVRQLAECNAVVVFSISGCCMCTVVKRLLFGLGVGPTVVELDHLSHPSADDIQAVLHHL 69
           E ++++    +VV+FS + CCM   +K L   LGV PT+ ELD +S       + + H L
Sbjct: 2   ENLQKMISEKSVVIFSKNSCCMSHTIKTLFLDLGVNPTIYELDEISRG-----KEIEHAL 61

Query: 70  LPHQPHP-IPAVFVGGKFLGGLDTLMSSHINGSLVPLLKQAGALWL 115
                 P +P VF+GG+ +GG + +MS H+N SLVP+LK+AGALWL
Sbjct: 62  AQLGCSPTVPVVFIGGQLVGGANQVMSLHLNRSLVPMLKRAGALWL 102

[Close]

BLAST of CmaCh03G014180.1 vs. NCBI nr
Match: gi|700194211|gb|KGN49415.1| (hypothetical protein Csa_6G524040 [Cucumis sativus])

HSP 1 Score: 228.0 bits (580), Expect = 8.2e-57
Identity = 112/116 (96.55%), Postives = 114/116 (98.28%), Query Frame = 1


Query: 1   MEMELAN--PYEVVRQLAECNAVVVFSISGCCMCTVVKRLLFGLGVGPTVVELDHLSHPS 60
           MEMELAN  P+EVVRQLAECNAVVVFSISGCCMCTVVKRLLFGLGVGPTVVELDHLSHPS
Sbjct: 1   MEMELANHRPFEVVRQLAECNAVVVFSISGCCMCTVVKRLLFGLGVGPTVVELDHLSHPS 60

Query: 61  ADDIQAVLHHLLPHQPHPIPAVFVGGKFLGGLDTLMSSHINGSLVPLLKQAGALWL 115
           ADDIQAVLHHLLPHQPHPIPAVFVGGKFLGGL+TLMSSHINGSLVPLLKQAGALWL
Sbjct: 61  ADDIQAVLHHLLPHQPHPIPAVFVGGKFLGGLETLMSSHINGSLVPLLKQAGALWL 116

[Close]

BLAST of CmaCh03G014180.1 vs. NCBI nr
Match: gi|590622342|ref|XP_007025024.1| (Glutaredoxin family protein, partial [Theobroma cacao])

HSP 1 Score: 166.8 bits (421), Expect = 2.2e-38
Identity = 80/111 (72.07%), Postives = 93/111 (83.78%), Query Frame = 1


Query: 3   MELANPYEVVRQLAECNAVVVFSISGCCMCTVVKRLLFGLGVGPTVVELDHLSHPSADDI 62
           M+L NPY++VRQLA  NAVV+FS+SGCCMCTV KRLLFGLGVGPT++ELDH  H S  DI
Sbjct: 15  MKLDNPYQIVRQLASTNAVVLFSMSGCCMCTVAKRLLFGLGVGPTIIELDH--HVSGPDI 74

Query: 63  QAVLHHLLPHQPHPIPAVFVGGKFLGGLDTLMSSHINGSLVPLLKQAGALW 114
           QAVL  L      P+PAVFVGGKFLGG++TLM+ HING+LVPLLK+AGALW
Sbjct: 75  QAVLFQLAADGRQPVPAVFVGGKFLGGIETLMACHINGTLVPLLKEAGALW 123

[Close]

BLAST of CmaCh03G014180.1 vs. NCBI nr
Match: gi|823219888|ref|XP_012442661.1| (PREDICTED: glutaredoxin-C9-like [Gossypium raimondii])

HSP 1 Score: 166.4 bits (420), Expect = 2.9e-38
Identity = 80/112 (71.43%), Postives = 94/112 (83.93%), Query Frame = 1


Query: 3   MELANPYEVVRQLAECNAVVVFSISGCCMCTVVKRLLFGLGVGPTVVELDHLSHPSADDI 62
           M L NPY++VRQLA  NAVV+FS+SGCCMCTV KRLLFGLGVGPT++ELDH  H +  DI
Sbjct: 26  MMLDNPYKIVRQLASTNAVVLFSMSGCCMCTVAKRLLFGLGVGPTIIELDH--HGAGPDI 85

Query: 63  QAVLHHLLPHQPHPIPAVFVGGKFLGGLDTLMSSHINGSLVPLLKQAGALWL 115
           QAVL  L+     P+PAVFVGGKFLGG++TLM+ HING+LVPLLK+AGALWL
Sbjct: 86  QAVLFQLVADGRQPVPAVFVGGKFLGGIETLMACHINGTLVPLLKEAGALWL 135

[Close]

BLAST of CmaCh03G014180.1 vs. NCBI nr
Match: gi|802596256|ref|XP_012072145.1| (PREDICTED: glutaredoxin-C9-like [Jatropha curcas])

HSP 1 Score: 165.2 bits (417), Expect = 6.5e-38
Identity = 78/111 (70.27%), Postives = 92/111 (82.88%), Query Frame = 1


Query: 4   ELANPYEVVRQLAECNAVVVFSISGCCMCTVVKRLLFGLGVGPTVVELDHLSHPSADDIQ 63
           EL NPYE+VRQ+A  NAVV+FS+SGCCMCTV KRLLFGLGVGPT++E+DH  H S  DIQ
Sbjct: 23  ELENPYEMVRQMASSNAVVLFSMSGCCMCTVAKRLLFGLGVGPTIIEVDH--HSSGPDIQ 82

Query: 64  AVLHHLLPHQPHPIPAVFVGGKFLGGLDTLMSSHINGSLVPLLKQAGALWL 115
           AVL  +      P+PA+FVGGKFLGG++TLM+ HING+LVPLLK AGALWL
Sbjct: 83  AVLFQISSDGQQPVPAIFVGGKFLGGIETLMACHINGTLVPLLKDAGALWL 131

[Close]

BLAST of CmaCh03G014180.1 vs. NCBI nr
Match: gi|1000965432|ref|XP_015574976.1| (PREDICTED: glutaredoxin-C9 isoform X2 [Ricinus communis])

HSP 1 Score: 162.2 bits (409), Expect = 5.5e-37
Identity = 77/111 (69.37%), Postives = 90/111 (81.08%), Query Frame = 1


Query: 4   ELANPYEVVRQLAECNAVVVFSISGCCMCTVVKRLLFGLGVGPTVVELDHLSHPSADDIQ 63
           +L NPY++VR LA  NAVV+FS+SGCCMCTV KRLLFGLGVGPT+ ELDH  H +  DIQ
Sbjct: 19  QLDNPYQIVRHLASSNAVVLFSMSGCCMCTVAKRLLFGLGVGPTIFELDH--HSAGHDIQ 78

Query: 64  AVLHHLLPHQPHPIPAVFVGGKFLGGLDTLMSSHINGSLVPLLKQAGALWL 115
           AVL  L      P+PA+FVGGKFLGG++TLM+ HING+LVPLLK AGALWL
Sbjct: 79  AVLFQLASEGQQPVPAIFVGGKFLGGIETLMACHINGTLVPLLKDAGALWL 127

The following BLAST results are available for this feature:

BLAST of CmaCh03G014180.1 vs. Swiss-Prot


Match Name	E-value	Identity	Description
GRXC9_ORYSJ	3.1e-32	66.98	Glutaredoxin-C9 OS=Oryza sativa subsp. japonica GN=GRXC9 PE=3 SV=1	[more]
GRXC7_ARATH	7.0e-24	55.14	Glutaredoxin-C7 OS=Arabidopsis thaliana GN=GRXC7 PE=1 SV=2	[more]
GRXC3_ORYSJ	2.7e-23	52.29	Glutaredoxin-C3 OS=Oryza sativa subsp. japonica GN=GRXC3 PE=2 SV=1	[more]
GRXC5_ORYSJ	2.2e-22	52.78	Glutaredoxin-C5 OS=Oryza sativa subsp. japonica GN=GRXC5 PE=2 SV=2	[more]
GRXC8_ARATH	3.8e-22	51.38	Glutaredoxin-C8 OS=Arabidopsis thaliana GN=GRXC8 PE=1 SV=2	[more]

BLAST of CmaCh03G014180.1 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0KI63_CUCSA	5.7e-57	96.55	Uncharacterized protein OS=Cucumis sativus GN=Csa_6G524040 PE=4 SV=1	[more]
A0A061GDL6_THECC	1.6e-38	72.07	Glutaredoxin family protein (Fragment) OS=Theobroma cacao GN=TCM_029438 PE=4 SV=...	[more]
A0A0D2TQJ4_GOSRA	2.0e-38	71.43	Uncharacterized protein OS=Gossypium raimondii GN=B456_009G153500 PE=4 SV=1	[more]
A0A067KPD5_JATCU	4.5e-38	70.27	Uncharacterized protein OS=Jatropha curcas GN=JCGZ_04645 PE=4 SV=1	[more]
B9S0W9_RICCO	3.8e-37	69.37	Glutaredoxin, grx, putative OS=Ricinus communis GN=RCOM_0630390 PE=4 SV=1	[more]

BLAST of CmaCh03G014180.1 vs. TAIR10


Match Name	E-value	Identity	Description
AT3G02000.1	3.9e-25	55.14	Thioredoxin superfamily protein	[more]
AT5G14070.1	2.2e-23	51.38	Thioredoxin superfamily protein	[more]
AT1G28480.1	9.1e-22	48.15	Thioredoxin superfamily protein	[more]
AT3G21460.1	3.2e-19	49.52	Glutaredoxin family protein	[more]
AT4G15700.1	3.0e-17	42.45	Thioredoxin superfamily protein	[more]

BLAST of CmaCh03G014180.1 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|700194211\|gb\|KGN49415.1\|	8.2e-57	96.55	hypothetical protein Csa_6G524040 [Cucumis sativus]	[more]
gi\|590622342\|ref\|XP_007025024.1\|	2.2e-38	72.07	Glutaredoxin family protein, partial [Theobroma cacao]	[more]
gi\|823219888\|ref\|XP_012442661.1\|	2.9e-38	71.43	PREDICTED: glutaredoxin-C9-like [Gossypium raimondii]	[more]
gi\|802596256\|ref\|XP_012072145.1\|	6.5e-38	70.27	PREDICTED: glutaredoxin-C9-like [Jatropha curcas]	[more]
gi\|1000965432\|ref\|XP_015574976.1\|	5.5e-37	69.37	PREDICTED: glutaredoxin-C9 isoform X2 [Ricinus communis]	[more]

Annotated Terms

The following terms have been associated with this mRNA:

Vocabulary: **INTERPRO**
Term	Definition
IPR002109	Glutaredoxin
IPR011905	GlrX-like_pln_2
IPR012336	Thioredoxin-like_fold

Vocabulary: **Molecular Function**
Term	Definition
GO:0009055	electron carrier activity
GO:0015035	protein disulfide oxidoreductase activity

Vocabulary: **Biological Process**
Term	Definition
GO:0045454	cell redox homeostasis

GO Annotation

GO Assignments

This mRNA is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0045454	cell redox homeostasis
biological_process	GO:0055114	oxidation-reduction process
cellular_component	GO:0005623	cell
molecular_function	GO:0009055	electron carrier activity
molecular_function	GO:0015035	protein disulfide oxidoreductase activity

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
CmaCh03G014180	CmaCh03G014180	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
CmaCh03G014180.1	CmaCh03G014180.1-protein	polypeptide

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
CmaCh03G014180.1.exon.1	CmaCh03G014180.1.exon.1	exon

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
CmaCh03G014180.1.CDS.1	CmaCh03G014180.1.CDS.1	CDS

InterPro

Analysis Name: InterPro Annotations of Cucurbita maxima
Date Performed: 2017-05-20


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR002109	Glutaredoxin	PFAM	PF00462	Glutaredoxin	coord: 21..86 score: 1.
IPR002109	Glutaredoxin	PROFILE	PS51354	GLUTAREDOXIN_2	coord: 9..113 score: 20
IPR011905	Glutaredoxin-like, plant II	TIGRFAMs	TIGR02189	TIGR02189	coord: 12..114 score: 2.2
IPR012336	Thioredoxin-like fold	GENE3D	G3DSA:3.40.30.10		coord: 9..113 score: 2.9
IPR012336	Thioredoxin-like fold	unknown	SSF52833	Thioredoxin-like	coord: 9..113 score: 1.24
None	No IPR available	PANTHER	PTHR10168	GLUTAREDOXIN	coord: 7..114 score: 5.8
None	No IPR available	PANTHER	PTHR10168:SF86	SUBFAMILY NOT NAMED	coord: 7..114 score: 5.8