CmaCh03G013840.1 (mRNA) Cucurbita maxima (Rimu) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CmaCh03G013840.1
Type	mRNA
Organism	Cucurbita maxima (Cucurbita maxima (Rimu))
Description	Transcription factor bHLH144, putative
Location	Cma_Chr03 : 8761183 .. 8761932 (+)
Sequence length	750

Genome Viewer

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGACTTTATGCAGAGTGACCTCAACTGCTACCTCAAAAACACGATGCTTCCAACAGCAAACCAAGGGGGTGATAATCACATGCAGATTCCTCTGTCATCTGCCTTTCCTTCTGTTTTACCTACTGGGCGAAACAACTTGGGACCTTTCAATACTGTTGAGTTTCAACCTTCTGAAGTTTGTCCCCAAAATTTCATCATCTTCGACCACACTGATAATCGAAGCCAAATCATGTTCCATCCTGCAATTGCCAACAAACTTAGTGGTCCTACTGCGAATATGTGCTCGAAGTACATCCAAAAGAACTTTTACGTCAATGATGAGCATAATGATGATAGTAGAGAAATATCATCTCCTTTGATGGAGGATTTGGATGACATCGATGCATTATTGAGCTTGGAAGATGAAGATCACGAAGACATTGATGGGTATGAAGATGAAGAGATCAGCACTGCAAGGTCTCATTTGAATTATGGGAATCAATCCCCTGATTCTTCATCCTCTTATAGTTCAGAACCCAGGAAGAATCAGTCATTTAATCCTGTCCACAAGTTGTCAAGCAGTGGAAGAAGCAGCTGCAACAGTGACATGAAACAGTTAAAAGTGAAGAAAATGGTGAGAAAGCTGAGAGAGATTCTACCTGGTGGTTACCAAATGACAACAGTCACTGTTCTCGACGAAGCTGTTAAATACCTGAAATCTCTCAAAGATGAAGTGCAGAAACTTGGAGTCGGGGGCTTGGAGAACTAA

mRNA sequence

ATGGACTTTATGCAGAGTGACCTCAACTGCTACCTCAAAAACACGATGCTTCCAACAGCAAACCAAGGGGGTGATAATCACATGCAGATTCCTCTGTCATCTGCCTTTCCTTCTGTTTTACCTACTGGGCGAAACAACTTGGGACCTTTCAATACTGTTGAGTTTCAACCTTCTGAAGTTTGTCCCCAAAATTTCATCATCTTCGACCACACTGATAATCGAAGCCAAATCATGTTCCATCCTGCAATTGCCAACAAACTTAGTGGTCCTACTGCGAATATGTGCTCGAAGTACATCCAAAAGAACTTTTACGTCAATGATGAGCATAATGATGATAGTAGAGAAATATCATCTCCTTTGATGGAGGATTTGGATGACATCGATGCATTATTGAGCTTGGAAGATGAAGATCACGAAGACATTGATGGGTATGAAGATGAAGAGATCAGCACTGCAAGGTCTCATTTGAATTATGGGAATCAATCCCCTGATTCTTCATCCTCTTATAGTTCAGAACCCAGGAAGAATCAGTCATTTAATCCTGTCCACAAGTTGTCAAGCAGTGGAAGAAGCAGCTGCAACAGTGACATGAAACAGTTAAAAGTGAAGAAAATGGTGAGAAAGCTGAGAGAGATTCTACCTGGTGGTTACCAAATGACAACAGTCACTGTTCTCGACGAAGCTGTTAAATACCTGAAATCTCTCAAAGATGAAGTGCAGAAACTTGGAGTCGGGGGCTTGGAGAACTAA

Coding sequence (CDS)

ATGGACTTTATGCAGAGTGACCTCAACTGCTACCTCAAAAACACGATGCTTCCAACAGCAAACCAAGGGGGTGATAATCACATGCAGATTCCTCTGTCATCTGCCTTTCCTTCTGTTTTACCTACTGGGCGAAACAACTTGGGACCTTTCAATACTGTTGAGTTTCAACCTTCTGAAGTTTGTCCCCAAAATTTCATCATCTTCGACCACACTGATAATCGAAGCCAAATCATGTTCCATCCTGCAATTGCCAACAAACTTAGTGGTCCTACTGCGAATATGTGCTCGAAGTACATCCAAAAGAACTTTTACGTCAATGATGAGCATAATGATGATAGTAGAGAAATATCATCTCCTTTGATGGAGGATTTGGATGACATCGATGCATTATTGAGCTTGGAAGATGAAGATCACGAAGACATTGATGGGTATGAAGATGAAGAGATCAGCACTGCAAGGTCTCATTTGAATTATGGGAATCAATCCCCTGATTCTTCATCCTCTTATAGTTCAGAACCCAGGAAGAATCAGTCATTTAATCCTGTCCACAAGTTGTCAAGCAGTGGAAGAAGCAGCTGCAACAGTGACATGAAACAGTTAAAAGTGAAGAAAATGGTGAGAAAGCTGAGAGAGATTCTACCTGGTGGTTACCAAATGACAACAGTCACTGTTCTCGACGAAGCTGTTAAATACCTGAAATCTCTCAAAGATGAAGTGCAGAAACTTGGAGTCGGGGGCTTGGAGAACTAA

Protein sequence

MDFMQSDLNCYLKNTMLPTANQGGDNHMQIPLSSAFPSVLPTGRNNLGPFNTVEFQPSEVCPQNFIIFDHTDNRSQIMFHPAIANKLSGPTANMCSKYIQKNFYVNDEHNDDSREISSPLMEDLDDIDALLSLEDEDHEDIDGYEDEEISTARSHLNYGNQSPDSSSSYSSEPRKNQSFNPVHKLSSSGRSSCNSDMKQLKVKKMVRKLREILPGGYQMTTVTVLDEAVKYLKSLKDEVQKLGVGGLEN

Homology

[Close]

BLAST of CmaCh03G013840.1 vs. Swiss-Prot
Match: BH144_ARATH (Transcription factor bHLH144 OS=Arabidopsis thaliana GN=BHLH144 PE=1 SV=1)

HSP 1 Score: 146.7 bits (369), Expect = 3.3e-34
Identity = 105/252 (41.67%), Postives = 150/252 (59.52%), Query Frame = 1


Query: 12  LKNTMLPT-ANQGGDNHMQIPLSS--AFPSVLPTGRNNLGPFNTVEFQPSEVCPQNFIIF 71
           ++N   P  +++ GD +M  P +S  ++ ++ P       P++ VE QPS VCP+NF+IF
Sbjct: 1   MQNNQFPHFSDEVGDRNMHNPYASGSSYDALFPPCAKL--PYHGVELQPSAVCPKNFVIF 60

Query: 72  DHTDNRSQIMFHPAIANKLSG-PTANMCSKYIQKNFYVNDEHNDDS---REISSPLMEDL 131
           D T +RSQ+M+HP + +KL   P+ N  +   Q N YV   + +     +E+SS   ED 
Sbjct: 61  DQTYDRSQVMYHPELTHKLMNTPSLNNLASTFQ-NEYVGGSYGNYGNYEQEVSSSYQEDP 120

Query: 132 DDIDALLSLED--EDHEDIDGYED----EEISTAR-SHLNYGNQSPDSSSSYSSEPRKNQ 191
           ++IDALLS ++  E+++D +G ED    EE+STAR S  +YGN + +S  S       N 
Sbjct: 121 NEIDALLSADEDYEENDDNEGEEDGGDSEEVSTARTSSRDYGNTTAESCCSSYGYNNNNN 180

Query: 192 SFNPVHKLSSSGRSSCNSDMKQLKVKKMVRKLREILPGGYQMTTVTVLDEAVKYLKSLKD 250
           + +    LS S  SS N    + K+KKM+  LR I+PGG QM T  VLDEAV+YLKSLK 
Sbjct: 181 NNSRKQSLSGSASSSNNDGKGRKKMKKMMGVLRRIVPGGEQMNTACVLDEAVQYLKSLKI 240

[Close]

BLAST of CmaCh03G013840.1 vs. TrEMBL
Match: A0A0A0KLX4_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_6G522710 PE=4 SV=1)

HSP 1 Score: 424.9 bits (1091), Expect = 6.9e-116
Identity = 221/251 (88.05%), Postives = 233/251 (92.83%), Query Frame = 1


Query: 1   MDFMQSDLNCYLKNTMLPTANQGGDNHMQIPLSSAFPSVLPTGRNNLGPFNTVEFQPSEV 60
           MDFMQSDLN YLK    PTA QG DNHMQIPLSSAFPSVLP GR NLGPFNTVEFQPSEV
Sbjct: 1   MDFMQSDLNFYLKKATHPTATQGDDNHMQIPLSSAFPSVLPPGRKNLGPFNTVEFQPSEV 60

Query: 61  CPQNFIIFDHTDNRSQIMFHPAIANKLSGPTANMCSKYIQKNFYVNDEHNDDSREISSPL 120
           CPQNFIIFDHTDNRSQIMFHPA+ANKLSGPTANMCSKYIQKNF VND+H++D REISSPL
Sbjct: 61  CPQNFIIFDHTDNRSQIMFHPALANKLSGPTANMCSKYIQKNFCVNDKHHED-REISSPL 120

Query: 121 MEDLDDIDALLSLEDEDHEDIDGYEDEEISTARSHLNYGNQSPDSSSS--YSSEPRKNQS 180
           MEDLDDIDALLSLE+E+HED+DG ED+E+STARSHLNYGNQSPDSSSS  YSS+PRKN S
Sbjct: 121 MEDLDDIDALLSLENENHEDLDGSEDDEVSTARSHLNYGNQSPDSSSSSTYSSKPRKNHS 180

Query: 181 FNPVHKLSSSGRSSCNSDMKQLKVKKMVRKLREILPGGYQMTTVTVLDEAVKYLKSLKDE 240
           FNPVHK SSSG SSCNSD+KQLK+KKMVRKLREILPGGYQMTTV VLDEAVKYLKSLKDE
Sbjct: 181 FNPVHKSSSSG-SSCNSDVKQLKLKKMVRKLREILPGGYQMTTVAVLDEAVKYLKSLKDE 240

Query: 241 VQKLGVGGLEN 250
           VQKLGVGGLEN
Sbjct: 241 VQKLGVGGLEN 249

[Close]

BLAST of CmaCh03G013840.1 vs. TrEMBL
Match: W9RTH8_9ROSA (Uncharacterized protein OS=Morus notabilis GN=L484_002862 PE=4 SV=1)

HSP 1 Score: 248.8 bits (634), Expect = 6.8e-63
Identity = 138/249 (55.42%), Postives = 180/249 (72.29%), Query Frame = 1


Query: 1   MDFMQSDLNCYLKNTMLPTANQGGDNHMQIPLSSAFPSVLPTGRNNLGPFNTVEFQPSEV 60
           M   Q+D   Y +    P   Q G+N+M IP++ AF + LP G  ++  F+ +EFQPSEV
Sbjct: 332 MQVCQNDNQFYPEMKAPPLEYQMGNNYMHIPVAPAFGADLPPGPMHMKHFHGIEFQPSEV 391

Query: 61  CPQNFIIFDHTDNRSQIMFHPAIANKLSGPTANMCSKYIQKNFYVNDEHNDDSREISSPL 120
           CP+NFIIFD TD+RSQIMFHPAIA+K S P  NM + Y+  NF    E N ++REISS L
Sbjct: 392 CPRNFIIFDQTDHRSQIMFHPAIAHKFSSPGLNMGTAYVPSNFG-GKETNIEAREISSTL 451

Query: 121 MEDLDDIDALLSLEDEDHEDIDGYEDEEISTARSHLNYGNQSPDSSSSYSSEPRKNQSFN 180
            ED DDIDALLSLE+E+ +    Y++EE+STAR++ NYG+ SP+S S+Y S+ +KN+S +
Sbjct: 452 REDSDDIDALLSLEEEEQK----YDEEEVSTARTYGNYGSSSPESCSNYGSKTKKNRSSS 511

Query: 181 PVHKLSSSGRSSCNSDMKQLKVKKMVRKLREILPGGYQMTTVTVLDEAVKYLKSLKDEVQ 240
            +H+ S    SSCN + K+ K+KKMVR L+ I+PGG QMTTVTVLDEAV+YLKSLK EVQ
Sbjct: 512 SIHRSSDGASSSCNDERKRQKMKKMVRALKGIVPGGNQMTTVTVLDEAVQYLKSLKVEVQ 571

Query: 241 KLGVGGLEN 250
           KLGVG L +
Sbjct: 572 KLGVGNLRD 575

[Close]

BLAST of CmaCh03G013840.1 vs. TrEMBL
Match: A0A126G8M8_MORAL (Basic helix-loop-helix 144-like protein transcript variant 1 OS=Morus alba PE=4 SV=1)

HSP 1 Score: 246.5 bits (628), Expect = 3.4e-62
Identity = 135/246 (54.88%), Postives = 180/246 (73.17%), Query Frame = 1


Query: 4   MQSDLNCYLKNTMLPTANQGGDNHMQIPLSSAFPSVLPTGRNNLGPFNTVEFQPSEVCPQ 63
           MQ+D   Y +    P   Q G+N+M IP++ A+ + LP G  ++  F+ +EFQPSEVCP+
Sbjct: 1   MQNDNQFYPEMKAPPLEYQMGNNYMHIPVAPAYGADLPPGPMHMKHFHGIEFQPSEVCPR 60

Query: 64  NFIIFDHTDNRSQIMFHPAIANKLSGPTANMCSKYIQKNFYVNDEHNDDSREISSPLMED 123
           NFIIFD TD+RSQIMFHPAIA+K S P  NM + Y+  NF    E N ++REISS L ED
Sbjct: 61  NFIIFDQTDHRSQIMFHPAIAHKFSSPGLNMGTAYVPGNFG-GKERNIEAREISSTLRED 120

Query: 124 LDDIDALLSLEDEDHEDIDGYEDEEISTARSHLNYGNQSPDSSSSYSSEPRKNQSFNPVH 183
            DDIDALLSLE+++ +    Y++EE+STAR++ NYG+ SP+S S+Y S+ +KN+S + +H
Sbjct: 121 SDDIDALLSLEEDEQK----YDEEEVSTARTYGNYGSSSPESCSNYGSKTKKNRSSSSIH 180

Query: 184 KLSSSGRSSCNSDMKQLKVKKMVRKLREILPGGYQMTTVTVLDEAVKYLKSLKDEVQKLG 243
           + S    SSCN + K+ K+KKMVR L+ I+PGG QMTTVTVLDEAV+YLKSLK EVQKLG
Sbjct: 181 RSSDGASSSCNDERKRQKMKKMVRALKGIVPGGNQMTTVTVLDEAVQYLKSLKVEVQKLG 240

Query: 244 VGGLEN 250
           VG + +
Sbjct: 241 VGNIRD 241

[Close]

BLAST of CmaCh03G013840.1 vs. TrEMBL
Match: A0A126G8R8_MORAL (Basic helix-loop-helix 144-like protein transcript variant 1 OS=Morus alba PE=2 SV=1)

HSP 1 Score: 245.4 bits (625), Expect = 7.5e-62
Identity = 135/246 (54.88%), Postives = 180/246 (73.17%), Query Frame = 1


Query: 4   MQSDLNCYLKNTMLPTANQGGDNHMQIPLSSAFPSVLPTGRNNLGPFNTVEFQPSEVCPQ 63
           MQ+D   Y +    P   Q G+N+M IP++ A+ + LP G  ++  F+ +EFQPSEVCP+
Sbjct: 1   MQNDNQFYPEMKAPPLEYQMGNNYMHIPVAPAYGADLPPGPMHMKHFHGIEFQPSEVCPR 60

Query: 64  NFIIFDHTDNRSQIMFHPAIANKLSGPTANMCSKYIQKNFYVNDEHNDDSREISSPLMED 123
           NFIIFD TD+RSQIMFHPAIA+K S P  NM + Y+  NF    E + ++REISS L ED
Sbjct: 61  NFIIFDQTDHRSQIMFHPAIAHKFSSPGLNMGTAYVPGNFG-GKERSIEAREISSTLRED 120

Query: 124 LDDIDALLSLEDEDHEDIDGYEDEEISTARSHLNYGNQSPDSSSSYSSEPRKNQSFNPVH 183
            DDIDALLSLE+++ +    Y++EE+STAR++ NYG+ SP+S S+Y S+ +KN+S + +H
Sbjct: 121 SDDIDALLSLEEDEQK----YDEEEVSTARTYGNYGSSSPESCSNYGSKTKKNRSSSSIH 180

Query: 184 KLSSSGRSSCNSDMKQLKVKKMVRKLREILPGGYQMTTVTVLDEAVKYLKSLKDEVQKLG 243
           + S    SSCN + K+ K+KKMVR L+ I+PGG QMTTVTVLDEAV+YLKSLK EVQKLG
Sbjct: 181 RSSDGASSSCNDERKRQKMKKMVRALKGIVPGGNQMTTVTVLDEAVQYLKSLKVEVQKLG 240

Query: 244 VGGLEN 250
           VG L +
Sbjct: 241 VGNLRD 241

[Close]

BLAST of CmaCh03G013840.1 vs. TrEMBL
Match: M5WH37_PRUPE (Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa010624mg PE=4 SV=1)

HSP 1 Score: 245.0 bits (624), Expect = 9.8e-62
Identity = 135/246 (54.88%), Postives = 180/246 (73.17%), Query Frame = 1


Query: 4   MQSDLNCYLKNTMLPTANQGGDNHMQIPLSSAFPSVLPTGRNNLGPFNTVEFQPSEVCPQ 63
           MQ D          P ANQ G+N+M IP++SA  +VLP    ++ PF+ VEFQ S++CP+
Sbjct: 1   MQRDQQFDPNKAAPPFANQVGNNYMHIPVASARGAVLPHEAKHIKPFHGVEFQTSDICPK 60

Query: 64  NFIIFDHTDNRSQIMFHPAIANKLSGPTANMCSKYIQKNFYVNDEHNDDSREISSPLMED 123
           NFIIFD TD+RSQIMF+PAIA+K++GP  N+C+ YIQ N  +N+ +N+D RE SS L ED
Sbjct: 61  NFIIFDQTDHRSQIMFNPAIAHKITGPAFNICAAYIQDNLGLNEGNNED-RETSSSLKED 120

Query: 124 LDDIDALLSLEDEDHEDIDGYEDEEISTARSHLNYGNQSPDSSSSYSSEPRKNQSFNPVH 183
            DDIDALLSLE+   E+++ Y++EE+STAR+H NYG+ SPDS S+Y  + +KN+  + + 
Sbjct: 121 SDDIDALLSLEE---EELEEYDEEEVSTARTHGNYGSMSPDSCSNYGLKTKKNRQCSSLG 180

Query: 184 KLSSSGRSSCNSDMKQLKVKKMVRKLREILPGGYQMTTVTVLDEAVKYLKSLKDEVQKLG 243
           K S  G SSCNS+ K+ K+KKMVR LR I+PGG +M TV VLDEAV+YLKSLK E+Q LG
Sbjct: 181 KSSGIGSSSCNSERKRQKMKKMVRVLRGIVPGGNEMNTVDVLDEAVQYLKSLKVELQNLG 240

Query: 244 VGGLEN 250
           V  L +
Sbjct: 241 VENLND 242

[Close]

BLAST of CmaCh03G013840.1 vs. TAIR10
Match: AT1G29950.1 (AT1G29950.1 basic helix-loop-helix (bHLH) DNA-binding superfamily protein)

HSP 1 Score: 146.7 bits (369), Expect = 1.8e-35
Identity = 105/252 (41.67%), Postives = 150/252 (59.52%), Query Frame = 1


Query: 12  LKNTMLPT-ANQGGDNHMQIPLSS--AFPSVLPTGRNNLGPFNTVEFQPSEVCPQNFIIF 71
           ++N   P  +++ GD +M  P +S  ++ ++ P       P++ VE QPS VCP+NF+IF
Sbjct: 1   MQNNQFPHFSDEVGDRNMHNPYASGSSYDALFPPCAKL--PYHGVELQPSAVCPKNFVIF 60

Query: 72  DHTDNRSQIMFHPAIANKLSG-PTANMCSKYIQKNFYVNDEHNDDS---REISSPLMEDL 131
           D T +RSQ+M+HP + +KL   P+ N  +   Q N YV   + +     +E+SS   ED 
Sbjct: 61  DQTYDRSQVMYHPELTHKLMNTPSLNNLASTFQ-NEYVGGSYGNYGNYEQEVSSSYQEDP 120

Query: 132 DDIDALLSLED--EDHEDIDGYED----EEISTAR-SHLNYGNQSPDSSSSYSSEPRKNQ 191
           ++IDALLS ++  E+++D +G ED    EE+STAR S  +YGN + +S  S       N 
Sbjct: 121 NEIDALLSADEDYEENDDNEGEEDGGDSEEVSTARTSSRDYGNTTAESCCSSYGYNNNNN 180

Query: 192 SFNPVHKLSSSGRSSCNSDMKQLKVKKMVRKLREILPGGYQMTTVTVLDEAVKYLKSLKD 250
           + +    LS S  SS N    + K+KKM+  LR I+PGG QM T  VLDEAV+YLKSLK 
Sbjct: 181 NNSRKQSLSGSASSSNNDGKGRKKMKKMMGVLRRIVPGGEQMNTACVLDEAVQYLKSLKI 240

[Close]

BLAST of CmaCh03G013840.1 vs. NCBI nr
Match: gi|449433686|ref|XP_004134628.1| (PREDICTED: transcription factor bHLH144 [Cucumis sativus])

HSP 1 Score: 424.9 bits (1091), Expect = 1.0e-115
Identity = 221/251 (88.05%), Postives = 233/251 (92.83%), Query Frame = 1


Query: 1   MDFMQSDLNCYLKNTMLPTANQGGDNHMQIPLSSAFPSVLPTGRNNLGPFNTVEFQPSEV 60
           MDFMQSDLN YLK    PTA QG DNHMQIPLSSAFPSVLP GR NLGPFNTVEFQPSEV
Sbjct: 1   MDFMQSDLNFYLKKATHPTATQGDDNHMQIPLSSAFPSVLPPGRKNLGPFNTVEFQPSEV 60

Query: 61  CPQNFIIFDHTDNRSQIMFHPAIANKLSGPTANMCSKYIQKNFYVNDEHNDDSREISSPL 120
           CPQNFIIFDHTDNRSQIMFHPA+ANKLSGPTANMCSKYIQKNF VND+H++D REISSPL
Sbjct: 61  CPQNFIIFDHTDNRSQIMFHPALANKLSGPTANMCSKYIQKNFCVNDKHHED-REISSPL 120

Query: 121 MEDLDDIDALLSLEDEDHEDIDGYEDEEISTARSHLNYGNQSPDSSSS--YSSEPRKNQS 180
           MEDLDDIDALLSLE+E+HED+DG ED+E+STARSHLNYGNQSPDSSSS  YSS+PRKN S
Sbjct: 121 MEDLDDIDALLSLENENHEDLDGSEDDEVSTARSHLNYGNQSPDSSSSSTYSSKPRKNHS 180

Query: 181 FNPVHKLSSSGRSSCNSDMKQLKVKKMVRKLREILPGGYQMTTVTVLDEAVKYLKSLKDE 240
           FNPVHK SSSG SSCNSD+KQLK+KKMVRKLREILPGGYQMTTV VLDEAVKYLKSLKDE
Sbjct: 181 FNPVHKSSSSG-SSCNSDVKQLKLKKMVRKLREILPGGYQMTTVAVLDEAVKYLKSLKDE 240

Query: 241 VQKLGVGGLEN 250
           VQKLGVGGLEN
Sbjct: 241 VQKLGVGGLEN 249

[Close]

BLAST of CmaCh03G013840.1 vs. NCBI nr
Match: gi|659078302|ref|XP_008439654.1| (PREDICTED: transcription factor bHLH144 [Cucumis melo])

HSP 1 Score: 422.9 bits (1086), Expect = 3.8e-115
Identity = 222/251 (88.45%), Postives = 231/251 (92.03%), Query Frame = 1


Query: 1   MDFMQSDLNCYLKNTMLPTANQGGDNHMQIPLSSAFPSVLPTGRNNLGPFNTVEFQPSEV 60
           MDFMQSDLN YLK    PTA QG DNHMQIPLSSAFPSVLP GR NLGPFNTVEFQPSEV
Sbjct: 1   MDFMQSDLNFYLKKATHPTATQGDDNHMQIPLSSAFPSVLPPGRKNLGPFNTVEFQPSEV 60

Query: 61  CPQNFIIFDHTDNRSQIMFHPAIANKLSGPTANMCSKYIQKNFYVNDEHNDDSREISSPL 120
           CPQNFIIFDHTDNRSQIMFHPAIANKLSGPTANMCSKYIQKNF VND H +D REISSPL
Sbjct: 61  CPQNFIIFDHTDNRSQIMFHPAIANKLSGPTANMCSKYIQKNFCVNDNHYED-REISSPL 120

Query: 121 MEDLDDIDALLSLEDEDHEDIDGYEDEEISTARSHLNYGNQSPDSSSS--YSSEPRKNQS 180
           MEDLDDIDALLSLE+E+HE +DG ED+E+STARSHLNYGNQSPDSSSS  YSS+PRKN S
Sbjct: 121 MEDLDDIDALLSLENENHEGLDGSEDDEVSTARSHLNYGNQSPDSSSSSTYSSKPRKNHS 180

Query: 181 FNPVHKLSSSGRSSCNSDMKQLKVKKMVRKLREILPGGYQMTTVTVLDEAVKYLKSLKDE 240
           FNPVHK SSSG SSC+SDMKQLK+KKMVRKLREILPGGYQMTTVTVLDEAVKYLKSLKDE
Sbjct: 181 FNPVHKSSSSG-SSCSSDMKQLKLKKMVRKLREILPGGYQMTTVTVLDEAVKYLKSLKDE 240

Query: 241 VQKLGVGGLEN 250
           VQKLGVGGLEN
Sbjct: 241 VQKLGVGGLEN 249

[Close]

BLAST of CmaCh03G013840.1 vs. NCBI nr
Match: gi|703102956|ref|XP_010097603.1| (hypothetical protein L484_002862 [Morus notabilis])

HSP 1 Score: 248.8 bits (634), Expect = 9.8e-63
Identity = 138/249 (55.42%), Postives = 180/249 (72.29%), Query Frame = 1


Query: 1   MDFMQSDLNCYLKNTMLPTANQGGDNHMQIPLSSAFPSVLPTGRNNLGPFNTVEFQPSEV 60
           M   Q+D   Y +    P   Q G+N+M IP++ AF + LP G  ++  F+ +EFQPSEV
Sbjct: 332 MQVCQNDNQFYPEMKAPPLEYQMGNNYMHIPVAPAFGADLPPGPMHMKHFHGIEFQPSEV 391

Query: 61  CPQNFIIFDHTDNRSQIMFHPAIANKLSGPTANMCSKYIQKNFYVNDEHNDDSREISSPL 120
           CP+NFIIFD TD+RSQIMFHPAIA+K S P  NM + Y+  NF    E N ++REISS L
Sbjct: 392 CPRNFIIFDQTDHRSQIMFHPAIAHKFSSPGLNMGTAYVPSNFG-GKETNIEAREISSTL 451

Query: 121 MEDLDDIDALLSLEDEDHEDIDGYEDEEISTARSHLNYGNQSPDSSSSYSSEPRKNQSFN 180
            ED DDIDALLSLE+E+ +    Y++EE+STAR++ NYG+ SP+S S+Y S+ +KN+S +
Sbjct: 452 REDSDDIDALLSLEEEEQK----YDEEEVSTARTYGNYGSSSPESCSNYGSKTKKNRSSS 511

Query: 181 PVHKLSSSGRSSCNSDMKQLKVKKMVRKLREILPGGYQMTTVTVLDEAVKYLKSLKDEVQ 240
            +H+ S    SSCN + K+ K+KKMVR L+ I+PGG QMTTVTVLDEAV+YLKSLK EVQ
Sbjct: 512 SIHRSSDGASSSCNDERKRQKMKKMVRALKGIVPGGNQMTTVTVLDEAVQYLKSLKVEVQ 571

Query: 241 KLGVGGLEN 250
           KLGVG L +
Sbjct: 572 KLGVGNLRD 575

[Close]

BLAST of CmaCh03G013840.1 vs. NCBI nr
Match: gi|923553833|gb|ALB35155.1| (basic helix-loop-helix 144-like protein transcript variant 1 [Morus alba])

HSP 1 Score: 246.5 bits (628), Expect = 4.9e-62
Identity = 135/246 (54.88%), Postives = 180/246 (73.17%), Query Frame = 1


Query: 4   MQSDLNCYLKNTMLPTANQGGDNHMQIPLSSAFPSVLPTGRNNLGPFNTVEFQPSEVCPQ 63
           MQ+D   Y +    P   Q G+N+M IP++ A+ + LP G  ++  F+ +EFQPSEVCP+
Sbjct: 1   MQNDNQFYPEMKAPPLEYQMGNNYMHIPVAPAYGADLPPGPMHMKHFHGIEFQPSEVCPR 60

Query: 64  NFIIFDHTDNRSQIMFHPAIANKLSGPTANMCSKYIQKNFYVNDEHNDDSREISSPLMED 123
           NFIIFD TD+RSQIMFHPAIA+K S P  NM + Y+  NF    E N ++REISS L ED
Sbjct: 61  NFIIFDQTDHRSQIMFHPAIAHKFSSPGLNMGTAYVPGNFG-GKERNIEAREISSTLRED 120

Query: 124 LDDIDALLSLEDEDHEDIDGYEDEEISTARSHLNYGNQSPDSSSSYSSEPRKNQSFNPVH 183
            DDIDALLSLE+++ +    Y++EE+STAR++ NYG+ SP+S S+Y S+ +KN+S + +H
Sbjct: 121 SDDIDALLSLEEDEQK----YDEEEVSTARTYGNYGSSSPESCSNYGSKTKKNRSSSSIH 180

Query: 184 KLSSSGRSSCNSDMKQLKVKKMVRKLREILPGGYQMTTVTVLDEAVKYLKSLKDEVQKLG 243
           + S    SSCN + K+ K+KKMVR L+ I+PGG QMTTVTVLDEAV+YLKSLK EVQKLG
Sbjct: 181 RSSDGASSSCNDERKRQKMKKMVRALKGIVPGGNQMTTVTVLDEAVQYLKSLKVEVQKLG 240

Query: 244 VGGLEN 250
           VG + +
Sbjct: 241 VGNIRD 241

[Close]

BLAST of CmaCh03G013840.1 vs. NCBI nr
Match: gi|923553857|gb|ALB35157.1| (basic helix-loop-helix 144-like protein transcript variant 1 [Morus alba])

HSP 1 Score: 245.4 bits (625), Expect = 1.1e-61
Identity = 135/246 (54.88%), Postives = 180/246 (73.17%), Query Frame = 1


Query: 4   MQSDLNCYLKNTMLPTANQGGDNHMQIPLSSAFPSVLPTGRNNLGPFNTVEFQPSEVCPQ 63
           MQ+D   Y +    P   Q G+N+M IP++ A+ + LP G  ++  F+ +EFQPSEVCP+
Sbjct: 1   MQNDNQFYPEMKAPPLEYQMGNNYMHIPVAPAYGADLPPGPMHMKHFHGIEFQPSEVCPR 60

Query: 64  NFIIFDHTDNRSQIMFHPAIANKLSGPTANMCSKYIQKNFYVNDEHNDDSREISSPLMED 123
           NFIIFD TD+RSQIMFHPAIA+K S P  NM + Y+  NF    E + ++REISS L ED
Sbjct: 61  NFIIFDQTDHRSQIMFHPAIAHKFSSPGLNMGTAYVPGNFG-GKERSIEAREISSTLRED 120

Query: 124 LDDIDALLSLEDEDHEDIDGYEDEEISTARSHLNYGNQSPDSSSSYSSEPRKNQSFNPVH 183
            DDIDALLSLE+++ +    Y++EE+STAR++ NYG+ SP+S S+Y S+ +KN+S + +H
Sbjct: 121 SDDIDALLSLEEDEQK----YDEEEVSTARTYGNYGSSSPESCSNYGSKTKKNRSSSSIH 180

Query: 184 KLSSSGRSSCNSDMKQLKVKKMVRKLREILPGGYQMTTVTVLDEAVKYLKSLKDEVQKLG 243
           + S    SSCN + K+ K+KKMVR L+ I+PGG QMTTVTVLDEAV+YLKSLK EVQKLG
Sbjct: 181 RSSDGASSSCNDERKRQKMKKMVRALKGIVPGGNQMTTVTVLDEAVQYLKSLKVEVQKLG 240

Query: 244 VGGLEN 250
           VG L +
Sbjct: 241 VGNLRD 241

The following BLAST results are available for this feature:

BLAST of CmaCh03G013840.1 vs. Swiss-Prot


Match Name	E-value	Identity	Description
BH144_ARATH	3.3e-34	41.67	Transcription factor bHLH144 OS=Arabidopsis thaliana GN=BHLH144 PE=1 SV=1	[more]

BLAST of CmaCh03G013840.1 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0KLX4_CUCSA	6.9e-116	88.05	Uncharacterized protein OS=Cucumis sativus GN=Csa_6G522710 PE=4 SV=1	[more]
W9RTH8_9ROSA	6.8e-63	55.42	Uncharacterized protein OS=Morus notabilis GN=L484_002862 PE=4 SV=1	[more]
A0A126G8M8_MORAL	3.4e-62	54.88	Basic helix-loop-helix 144-like protein transcript variant 1 OS=Morus alba PE=4 ...	[more]
A0A126G8R8_MORAL	7.5e-62	54.88	Basic helix-loop-helix 144-like protein transcript variant 1 OS=Morus alba PE=2 ...	[more]
M5WH37_PRUPE	9.8e-62	54.88	Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa010624mg PE=4 SV=1	[more]

BLAST of CmaCh03G013840.1 vs. TAIR10


Match Name	E-value	Identity	Description
AT1G29950.1	1.8e-35	41.67	basic helix-loop-helix (bHLH) DNA-binding superfamily protein	[more]

BLAST of CmaCh03G013840.1 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|449433686\|ref\|XP_004134628.1\|	1.0e-115	88.05	PREDICTED: transcription factor bHLH144 [Cucumis sativus]	[more]
gi\|659078302\|ref\|XP_008439654.1\|	3.8e-115	88.45	PREDICTED: transcription factor bHLH144 [Cucumis melo]	[more]
gi\|703102956\|ref\|XP_010097603.1\|	9.8e-63	55.42	hypothetical protein L484_002862 [Morus notabilis]	[more]
gi\|923553833\|gb\|ALB35155.1\|	4.9e-62	54.88	basic helix-loop-helix 144-like protein transcript variant 1 [Morus alba]	[more]
gi\|923553857\|gb\|ALB35157.1\|	1.1e-61	54.88	basic helix-loop-helix 144-like protein transcript variant 1 [Morus alba]	[more]

Annotated Terms

The following terms have been associated with this mRNA:

Vocabulary: **INTERPRO**
Term	Definition
IPR011598	bHLH_dom

Vocabulary: **Molecular Function**
Term	Definition
GO:0046983	protein dimerization activity

GO Annotation

GO Assignments

This mRNA is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0046983	protein dimerization activity

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
CmaCh03G013840	CmaCh03G013840	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
CmaCh03G013840.1	CmaCh03G013840.1-protein	polypeptide

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
CmaCh03G013840.1.exon.1	CmaCh03G013840.1.exon.1	exon

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
CmaCh03G013840.1.CDS.1	CmaCh03G013840.1.CDS.1	CDS

InterPro

Analysis Name: InterPro Annotations of Cucurbita maxima
Date Performed: 2017-05-20


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain	GENE3D	G3DSA:4.10.280.10		coord: 201..242 score: 2.
IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain	PROFILE	PS50888	BHLH	coord: 186..235 score: 8
IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain	unknown	SSF47459	HLH, helix-loop-helix DNA-binding domain	coord: 201..243 score: 3.2
None	No IPR available	PANTHER	PTHR12565	STEROL REGULATORY ELEMENT-BINDING PROTEIN	coord: 16..243 score: 6.3
None	No IPR available	PANTHER	PTHR12565:SF155	TRANSCRIPTION FACTOR BHLH144	coord: 16..243 score: 6.3