CmaCh03G001550.1 (mRNA) Cucurbita maxima (Rimu)

NameCmaCh03G001550.1
TypemRNA
OrganismCucurbita maxima (Cucurbita maxima (Rimu))
DescriptionUnknown protein
LocationCma_Chr03 : 1984631 .. 1985500 (+)
Sequence length774
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGCCAGAGCCTCAAACTCATGAAAATTTCGCTCAAAATCCACCACTTTCACCACTCTCCCGCTCCTCTTTTCCCGCCGCCGATCCAGATCCCGGCGATCGTCCTCTAGCTCCAACTGCCGTCGCCGTCTCAGCCGCCGCGGACTTTGGTGAGGATACCGATTTGATTCGAGAACCTAAACGGCGGAAGCACTGTCCGTCGGCTCTCGAGAATCTCGACGAGTTGACGTCGGCGTCGAACTCCAGCTTTGCCTTCACTTTCGACACCAAATTTTGCAGAGTCTCAGCCGAGATCACTCCGAAATTCGGATCGTTCAACTCGATCGCATCGGAAATCGAGCCGACGAAGAAGGAGAAGAAAGAGCAGAGGTCGGTTCTCGATTCGGCGAGCAAAACGAGAGGAGACGAAGAACAGATGAAAGAAGAAGAAGTGGAAGTTGCCGATGCGTTGCTAGAAGCAATTGAAGGAGGAGGTCTGGAATCTATAGCGGATTGAAACAAATTCTTCGTAATGTTCAAACTCTCTCTCTCTCTCTGATTCTCTATTTGATGTGAAATTATTGTTGATCGTTCGTTAATGGCGGCTCTGAAAATCGCATGTTAGGGTTAAAATGAAGGCAATTCAAATCAAATCAAAAGCAAGAACAAATTGAATAGAGTGAAGGAATTCTGTGAATCGTTGATGGAGAACGGATTCAATTTGTTTGATTGAATTATTAAATCGATGATTGCTTAGGAGTTGTAGTTGTGAGAGCCACACGTGCATTGTTTGTTTGCCTTTATTCTGCGATTATTTATTTTCAAATGCTTTTTTTCTCTGAACTCATCCTTTATGCATTTCTTCTTTACAACCAATCAATGCAAACTATGC

mRNA sequence

ATGCCAGAGCCTCAAACTCATGAAAATTTCGCTCAAAATCCACCACTTTCACCACTCTCCCGCTCCTCTTTTCCCGCCGCCGATCCAGATCCCGGCGATCGTCCTCTAGCTCCAACTGCCGTCGCCGTCTCAGCCGCCGCGGACTTTGGTGAGGATACCGATTTGATTCGAGAACCTAAACGGCGGAAGCACTGTCCGTCGGCTCTCGAGAATCTCGACGAGTTGACGTCGGCGTCGAACTCCAGCTTTGCCTTCACTTTCGACACCAAATTTTGCAGAGTCTCAGCCGAGATCACTCCGAAATTCGGATCGTTCAACTCGATCGCATCGGAAATCGAGCCGACGAAGAAGGAGAAGAAAGAGCAGAGGTCGGTTCTCGATTCGGCGAGCAAAACGAGAGGAGACGAAGAACAGATGAAAGAAGAAGAAGTGGAAGTTGCCGATGCGTTGCTAGAAGCAATTGAAGGAGGAGGTCTGGAATCTATAGCGGATTGAAACAAATTCTTCGGTTAAAATGAAGGCAATTCAAATCAAATCAAAAGCAAGAACAAATTGAATAGAGTGAAGGAATTCTGTGAATCGTTGATGGAGAACGGATTCAATTTGTTTGATTGAATTATTAAATCGATGATTGCTTAGGAGTTGTAGTTGTGAGAGCCACACGTGCATTGTTTGTTTGCCTTTATTCTGCGATTATTTATTTTCAAATGCTTTTTTTCTCTGAACTCATCCTTTATGCATTTCTTCTTTACAACCAATCAATGCAAACTATGC

Coding sequence (CDS)

ATGCCAGAGCCTCAAACTCATGAAAATTTCGCTCAAAATCCACCACTTTCACCACTCTCCCGCTCCTCTTTTCCCGCCGCCGATCCAGATCCCGGCGATCGTCCTCTAGCTCCAACTGCCGTCGCCGTCTCAGCCGCCGCGGACTTTGGTGAGGATACCGATTTGATTCGAGAACCTAAACGGCGGAAGCACTGTCCGTCGGCTCTCGAGAATCTCGACGAGTTGACGTCGGCGTCGAACTCCAGCTTTGCCTTCACTTTCGACACCAAATTTTGCAGAGTCTCAGCCGAGATCACTCCGAAATTCGGATCGTTCAACTCGATCGCATCGGAAATCGAGCCGACGAAGAAGGAGAAGAAAGAGCAGAGGTCGGTTCTCGATTCGGCGAGCAAAACGAGAGGAGACGAAGAACAGATGAAAGAAGAAGAAGTGGAAGTTGCCGATGCGTTGCTAGAAGCAATTGAAGGAGGAGGTCTGGAATCTATAGCGGATTGA

Protein sequence

MPEPQTHENFAQNPPLSPLSRSSFPAADPDPGDRPLAPTAVAVSAAADFGEDTDLIREPKRRKHCPSALENLDELTSASNSSFAFTFDTKFCRVSAEITPKFGSFNSIASEIEPTKKEKKEQRSVLDSASKTRGDEEQMKEEEVEVADALLEAIEGGGLESIAD
BLAST of CmaCh03G001550.1 vs. TrEMBL
Match: A0A0A0L245_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_4G420180 PE=4 SV=1)

HSP 1 Score: 174.5 bits (441), Expect = 1.1e-40
Identity = 107/156 (68.59%), Postives = 119/156 (76.28%), Query Frame = 1

Query: 1   MPEPQTHENFAQNPPLSPLSRSSF-PAA-DPDPGDRPLAPTAVAVSAAADFGEDTDLIRE 60
           M EPQT EN AQN  LSPLSRSSF PAA DPDP D PL+P AVAV       ED DLIRE
Sbjct: 1   MAEPQTRENLAQNLSLSPLSRSSFSPAAVDPDPVDPPLSPPAVAVL------EDPDLIRE 60

Query: 61  PKRRKHCPSALENLDELTSASNSSFAFTFDTKFCRVSAEITPKFGSFNSIASEIEPTKKE 120
           PKRRKHCP+ALENLDELTSASNSSFAFTFDTKFC  SAEITPKFGSFNSIA E+E  + +
Sbjct: 61  PKRRKHCPTALENLDELTSASNSSFAFTFDTKFCGFSAEITPKFGSFNSIAPEME--RNQ 120

Query: 121 KKEQRSVLDSASKTRGDEEQMKEEEVEVADALLEAI 155
           KK +R V     ++    E+ +EEE+ +ADALLEAI
Sbjct: 121 KKAEREVRVEEEESVHKVEEEEEEEIGIADALLEAI 148

BLAST of CmaCh03G001550.1 vs. TrEMBL
Match: A0A0V0HAK9_SOLCH (Putative ovule protein OS=Solanum chacoense PE=4 SV=1)

HSP 1 Score: 79.0 bits (193), Expect = 6.2e-12
Identity = 53/144 (36.81%), Postives = 83/144 (57.64%), Query Frame = 1

Query: 17  SPLSRSSFPA-ADPDPGDRPLAPTAVAVSAAADFGEDTDLIREPKRRKHCPSALENLDEL 76
           +P    S PA ++ + GD P  PT           ED D++R+PKRRK+CPSAL+  D +
Sbjct: 9   APAENCSDPAPSNSNSGDDPSPPTTAESWEEKPEIEDPDILRQPKRRKNCPSALDKFDSV 68

Query: 77  TSASNSSFAFTFDTKFCRVSA-EITPKFGSFNSIASEIEPTKKEKKEQRSVLDSASKTRG 136
            S SN  F+F+FD+KF   S  E+TPKFGSFN +      + K+ K + +VL+   +   
Sbjct: 69  NSGSNFGFSFSFDSKFSGCSTPEVTPKFGSFNRVK---PGSTKDPKSEETVLEEEDEDDD 128

Query: 137 DEEQMKEEEVEVADA--LLEAIEG 157
           D+++ K + V   ++  LL +++G
Sbjct: 129 DDDEEKPDVVVEKNSMGLLSSVDG 149

BLAST of CmaCh03G001550.1 vs. TrEMBL
Match: W9S7C4_9ROSA (Uncharacterized protein OS=Morus notabilis GN=L484_027885 PE=4 SV=1)

HSP 1 Score: 76.6 bits (187), Expect = 3.1e-11
Identity = 52/127 (40.94%), Postives = 66/127 (51.97%), Query Frame = 1

Query: 19  LSRSSFPAADPDPGDRPLAPTAVAVSAAADFGEDTDLIREPKRRKHCPSALENLDELTSA 78
           LS  S  + +PD GD    PTA    A     ED D  REPK+R+ CP ALE ++EL   
Sbjct: 15  LSLPSSASENPDSGDVSQTPTA----ADYPVSEDPDSTREPKKRRCCPKALEQVEELLIG 74

Query: 79  SNSS---FAFTFDTKFCRVSAEITPKFGSFNSIASEIEPTKKEKKEQRSVLDSASKTRGD 138
            NS+   F+F+FDTKF   S EITPKFGSFN + S      +  K++    D      G 
Sbjct: 75  PNSNPNLFSFSFDTKFSGCSPEITPKFGSFNLVVSNSAQNTRNCKKEAEGKDQTQNPTGS 134

Query: 139 EEQMKEE 143
             +  EE
Sbjct: 135 SSETVEE 137

BLAST of CmaCh03G001550.1 vs. TrEMBL
Match: M1CPV9_SOLTU (Uncharacterized protein OS=Solanum tuberosum GN=PGSC0003DMG400028103 PE=4 SV=1)

HSP 1 Score: 75.9 bits (185), Expect = 5.2e-11
Identity = 52/144 (36.11%), Postives = 82/144 (56.94%), Query Frame = 1

Query: 17  SPLSRSSFPA-ADPDPGDRPLAPTAVAVSAAADFGEDTDLIREPKRRKHCPSALENLDEL 76
           +P    S PA ++ +  D PL  T           ED D++R+PKRRK+CPSAL+  D +
Sbjct: 9   APAENCSDPAPSNSNSSDDPLPSTTAESWEEKPEIEDPDILRQPKRRKNCPSALDKFDSV 68

Query: 77  TSASNSSFAFTFDTKFCRVSA-EITPKFGSFNSIASEIEPTKKEKKEQRSVLDSASKTRG 136
            S SN  F+F+FD+KF   S  E+TPKFGSFN +      + K+ K + +VL+   +   
Sbjct: 69  NSGSNFGFSFSFDSKFSGCSTPEVTPKFGSFNRVK---PGSTKDPKSEETVLEEEDEDDD 128

Query: 137 DEEQMKEEEVEVADA--LLEAIEG 157
           D+++ K + V   ++  LL +++G
Sbjct: 129 DDDEEKPDVVVEKNSMGLLSSVDG 149

BLAST of CmaCh03G001550.1 vs. TrEMBL
Match: K4D2Y7_SOLLC (Uncharacterized protein OS=Solanum lycopersicum PE=4 SV=1)

HSP 1 Score: 73.9 bits (180), Expect = 2.0e-10
Identity = 55/143 (38.46%), Postives = 80/143 (55.94%), Query Frame = 1

Query: 17  SPLSRSSFPA-ADPDPGDRPLAPTAVAVSAAADFGEDTDLIREPKRRKHCPSALENLDEL 76
           +P    S PA ++ + GD P  PT           ED D+IR+ KRRK+CPSAL+  D +
Sbjct: 9   APAENCSDPAPSNSNSGDDPSPPTTAESWEEKPEIEDPDIIRQAKRRKNCPSALDKFDSV 68

Query: 77  TSASNSSFAFTFDTKFCRVSA-EITPKFGSFNSIASEIEPTKKEKKEQRSVLDSASKTRG 136
            S SN  F+F+FD+KF   S  E+TPKFGSFN +      + K+ K + +VL+   +   
Sbjct: 69  NSGSNFGFSFSFDSKFSGCSTPEVTPKFGSFNRVK---PGSTKDPKSEETVLEVEDE--- 128

Query: 137 DEEQMKEEEVEVAD-ALLEAIEG 157
           DEE+  +  VE     LL +++G
Sbjct: 129 DEEEKPDVVVEKNSLGLLSSVDG 145

BLAST of CmaCh03G001550.1 vs. NCBI nr
Match: gi|659111461|ref|XP_008455747.1| (PREDICTED: X-linked retinitis pigmentosa GTPase regulator-interacting protein 1-like [Cucumis melo])

HSP 1 Score: 176.0 bits (445), Expect = 5.3e-41
Identity = 105/157 (66.88%), Postives = 119/157 (75.80%), Query Frame = 1

Query: 1   MPEPQTHENFAQNPPLSPLSRSSF--PAADPDPGDRPLAPTAVAVSAAADFGEDTDLIRE 60
           M EPQT EN AQN  LSPLSRSSF  PA DPDP D PL+P AVA        +D DLIRE
Sbjct: 1   MAEPQTRENLAQNLSLSPLSRSSFSPPAVDPDPVDPPLSPPAVAPL------QDPDLIRE 60

Query: 61  PKRRKHCPSALENLDELTSASNSSFAFTFDTKFCRVSAEITPKFGSFNSIASEIEPTKKE 120
           PKRRKHCP+ALENLDELTSASNSSFAFTFDTKFC  SAEITPKFGSFNSIA E+E  + +
Sbjct: 61  PKRRKHCPTALENLDELTSASNSSFAFTFDTKFCGFSAEITPKFGSFNSIAPEME--RNQ 120

Query: 121 KKEQRSVLDSASKTRGDEEQMKEEEVEVADALLEAIE 156
           KKE+R V     +T    E+ +EEE+ +ADALL+AI+
Sbjct: 121 KKEEREVRVEEEETVHKVEEEEEEEIGIADALLKAIK 149

BLAST of CmaCh03G001550.1 vs. NCBI nr
Match: gi|778694676|ref|XP_011653847.1| (PREDICTED: uncharacterized protein LOC105435263 isoform X1 [Cucumis sativus])

HSP 1 Score: 174.5 bits (441), Expect = 1.5e-40
Identity = 107/156 (68.59%), Postives = 119/156 (76.28%), Query Frame = 1

Query: 1   MPEPQTHENFAQNPPLSPLSRSSF-PAA-DPDPGDRPLAPTAVAVSAAADFGEDTDLIRE 60
           M EPQT EN AQN  LSPLSRSSF PAA DPDP D PL+P AVAV       ED DLIRE
Sbjct: 1   MAEPQTRENLAQNLSLSPLSRSSFSPAAVDPDPVDPPLSPPAVAVL------EDPDLIRE 60

Query: 61  PKRRKHCPSALENLDELTSASNSSFAFTFDTKFCRVSAEITPKFGSFNSIASEIEPTKKE 120
           PKRRKHCP+ALENLDELTSASNSSFAFTFDTKFC  SAEITPKFGSFNSIA E+E  + +
Sbjct: 61  PKRRKHCPTALENLDELTSASNSSFAFTFDTKFCGFSAEITPKFGSFNSIAPEME--RNQ 120

Query: 121 KKEQRSVLDSASKTRGDEEQMKEEEVEVADALLEAI 155
           KK +R V     ++    E+ +EEE+ +ADALLEAI
Sbjct: 121 KKAEREVRVEEEESVHKVEEEEEEEIGIADALLEAI 148

BLAST of CmaCh03G001550.1 vs. NCBI nr
Match: gi|778694679|ref|XP_011653849.1| (PREDICTED: uncharacterized protein LOC105435263 isoform X2 [Cucumis sativus])

HSP 1 Score: 165.2 bits (417), Expect = 9.4e-38
Identity = 100/147 (68.03%), Postives = 112/147 (76.19%), Query Frame = 1

Query: 1   MPEPQTHENFAQNPPLSPLSRSSF-PAA-DPDPGDRPLAPTAVAVSAAADFGEDTDLIRE 60
           M EPQT EN AQN  LSPLSRSSF PAA DPDP D PL+P AVAV       ED DLIRE
Sbjct: 1   MAEPQTRENLAQNLSLSPLSRSSFSPAAVDPDPVDPPLSPPAVAVL------EDPDLIRE 60

Query: 61  PKRRKHCPSALENLDELTSASNSSFAFTFDTKFCRVSAEITPKFGSFNSIASEIEPTKKE 120
           PKRRKHCP+ALENLDELTSASNSSFAFTFDTKFC  SAEITPKFGSFNSIA E+E  +K+
Sbjct: 61  PKRRKHCPTALENLDELTSASNSSFAFTFDTKFCGFSAEITPKFGSFNSIAPEMERNQKK 120

Query: 121 KKEQRSVLDSASKTRGDEEQMKEEEVE 146
            + +  V +  S  + +EE+ +EEE E
Sbjct: 121 AEREVRVEEEESVHKVEEEEEEEEEEE 141

BLAST of CmaCh03G001550.1 vs. NCBI nr
Match: gi|703155556|ref|XP_010111232.1| (hypothetical protein L484_027885 [Morus notabilis])

HSP 1 Score: 76.6 bits (187), Expect = 4.4e-11
Identity = 52/127 (40.94%), Postives = 66/127 (51.97%), Query Frame = 1

Query: 19  LSRSSFPAADPDPGDRPLAPTAVAVSAAADFGEDTDLIREPKRRKHCPSALENLDELTSA 78
           LS  S  + +PD GD    PTA    A     ED D  REPK+R+ CP ALE ++EL   
Sbjct: 15  LSLPSSASENPDSGDVSQTPTA----ADYPVSEDPDSTREPKKRRCCPKALEQVEELLIG 74

Query: 79  SNSS---FAFTFDTKFCRVSAEITPKFGSFNSIASEIEPTKKEKKEQRSVLDSASKTRGD 138
            NS+   F+F+FDTKF   S EITPKFGSFN + S      +  K++    D      G 
Sbjct: 75  PNSNPNLFSFSFDTKFSGCSPEITPKFGSFNLVVSNSAQNTRNCKKEAEGKDQTQNPTGS 134

Query: 139 EEQMKEE 143
             +  EE
Sbjct: 135 SSETVEE 137

BLAST of CmaCh03G001550.1 vs. NCBI nr
Match: gi|970056961|ref|XP_015055124.1| (PREDICTED: uncharacterized protein LOC107001678 [Solanum pennellii])

HSP 1 Score: 74.3 bits (181), Expect = 2.2e-10
Identity = 55/148 (37.16%), Postives = 78/148 (52.70%), Query Frame = 1

Query: 17  SPLSRSSFPA-ADPDPGDRPLAPTAVAVSAAADFGEDTDLIREPKRRKHCPSALENLDEL 76
           +P    S PA ++ + GD P  PT           ED D+IR+ KRRK+CPSAL+  D +
Sbjct: 9   APAENCSDPAPSNSNSGDDPSPPTTAESWEEKPEIEDPDIIRQAKRRKNCPSALDKFDSV 68

Query: 77  TSASNSSFAFTFDTKFCRVSA-EITPKFGSFNSIASEIEPTKKEKKEQRSVLDSASKTRG 136
            S SN  F+F+FD+KF   S  E+TPKFGSFN +      + K+ K + +VL+       
Sbjct: 69  NSGSNFGFSFSFDSKFSGCSTPEVTPKFGSFNRVK---PGSTKDPKSEETVLE------- 128

Query: 137 DEEQMKEEEVEVADALLEAIEGGGLESI 163
                 EE+ E  D ++E    G L S+
Sbjct: 129 ------EEDEEKPDVVVEKNSLGLLSSV 140

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A0A0L245_CUCSA1.1e-4068.59Uncharacterized protein OS=Cucumis sativus GN=Csa_4G420180 PE=4 SV=1[more]
A0A0V0HAK9_SOLCH6.2e-1236.81Putative ovule protein OS=Solanum chacoense PE=4 SV=1[more]
W9S7C4_9ROSA3.1e-1140.94Uncharacterized protein OS=Morus notabilis GN=L484_027885 PE=4 SV=1[more]
M1CPV9_SOLTU5.2e-1136.11Uncharacterized protein OS=Solanum tuberosum GN=PGSC0003DMG400028103 PE=4 SV=1[more]
K4D2Y7_SOLLC2.0e-1038.46Uncharacterized protein OS=Solanum lycopersicum PE=4 SV=1[more]
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
gi|659111461|ref|XP_008455747.1|5.3e-4166.88PREDICTED: X-linked retinitis pigmentosa GTPase regulator-interacting protein 1-... [more]
gi|778694676|ref|XP_011653847.1|1.5e-4068.59PREDICTED: uncharacterized protein LOC105435263 isoform X1 [Cucumis sativus][more]
gi|778694679|ref|XP_011653849.1|9.4e-3868.03PREDICTED: uncharacterized protein LOC105435263 isoform X2 [Cucumis sativus][more]
gi|703155556|ref|XP_010111232.1|4.4e-1140.94hypothetical protein L484_027885 [Morus notabilis][more]
gi|970056961|ref|XP_015055124.1|2.2e-1037.16PREDICTED: uncharacterized protein LOC107001678 [Solanum pennellii][more]
GO Assignments
This mRNA is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameType
CmaCh03G001550CmaCh03G001550gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameType
CmaCh03G001550.1CmaCh03G001550.1-proteinpolypeptide


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameType
CmaCh03G001550.1.exon.2CmaCh03G001550.1.exon.2exon
CmaCh03G001550.1.exon.1CmaCh03G001550.1.exon.1exon


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameType
CmaCh03G001550.1.CDS.1CmaCh03G001550.1.CDS.1CDS


The following three_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameType
CmaCh03G001550.1.three_prime_UTR.1CmaCh03G001550.1.three_prime_UTR.1three_prime_UTR
CmaCh03G001550.1.three_prime_UTR.2CmaCh03G001550.1.three_prime_UTR.2three_prime_UTR