CmaCh02G008610.1 (mRNA) Cucurbita maxima (Rimu)

Overview
NameCmaCh02G008610.1
TypemRNA
OrganismCucurbita maxima (Cucurbita maxima (Rimu))
DescriptionDNA repair RAD51-like protein
LocationCma_Chr02 : 5025266 .. 5029052 (-)
Sequence length318
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSexon
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGCTAAGGCTATGGCTAAGCTAAGGTAGCAGCACCAACACTGACAGGACTGCATTTTTCAATTATGGTATTTTGGGTTTAAAGCTAGGTAGCTACCACCACAACACCATATTTGATCACTCAAGTCTATTTCCAACCCCCATCTGGGTGTGTTATAGCCTCGTAGGCTGAGCTTGTAGTTACTGTCTGTTTTAACTCATTATGTATCGTTGTTAATCTCACCGTTTTAAAATGCGTTTGTTAAGGGGAAGTCTTCATACCCTTATAATAAATAATGTTTCGTTTTCCTCTTCAACCGATGTGGGATTTCACATTTCACCCCAACCTCACGGTTTTAAAACACGACTGTTAGGGAAAATTTTTCATACCCTTATAATAAAGAATGATGGGTTGTGTTGTAGCCTTGTATGGCTCTACCTACATAATGAATGAGTTTGTGCAGTAGCTCAAACCCACCGTTGGTAGATATTGCCCGTTTTGGGTCGTTACGTATCGTCGTCAGCCTCACGGTTTTAAACCGCGTCTGTTTGGGAGAAGTTTTCACACCTTTATAATAAAGAATGTTTCGTTCCCCTCTTCAACCGATGTGAGATTTCACAACCTACCCAAGCCTCATGGTTTTAAAACGCGATTGTTAAGGAAAGGTTTCACACCCTTATAATAAAGAATGACGGGTTGTGTTGTAGCCTTGTATGGCTCTGCCTACAGAATCAATGAGTTTGAGTAATAGTTTAAGTCAATTGCTAGTAGATATTATATGCTTTAGCTCGTTACCTATCGTCTTTAGCCTCACGATTTTAAAACGCGTCTGTTTGGGAGAAGTTTCTACACCCTTATAATAAAGAATGCTTTGTTCCCCTCTTCAACCAATGTGAGATTTCACAATCTATCTTAGCATCACGATCTTAAAATGCGACTATTAGGGAAAGGTTTCACACCCTTATAATAAAGAATGATGGGTTTTGTTGTAGCCTTGTATGTCTCTACCTACACAATAAATGAGTTTGTGTCACAACCCAAGCCTACTGCTAGTAAATATTGTCCGTTTTTGGCTCGTTACGTATCGTCGTCAGCCTCACGATTTTAAAATGTATCTGTTAGGAAGAGGTTTCTACACCGTTATAATAAGAATGTTCCGTTCCTTCTCCAATCGATGTGAGATCTCATAATCCACCCCCCTTTAGGGTCCAGTGTTCTCGTTGGCACACCACTGGCACATATTATTCGCTTTGGTCCGTTACGTATCATTATTAGCCTCAGTTTTAAAACGTATCTATTAGGGAGAGATTTTCACATCCTTATAAAGTTTTCACACTCTGCTTGCTTCTATAATTTTATTTTATGTATCCACATACCCTTTTAGGTTTCAAGATCTAAATGCTAGTGAAGGTATGCTCCAACCGATTTAAGTATTATGGGCTAAATGCTAGCCAAGGTATGCATCAACATATAACCATTTCAAAAGCAGTCGAATACTCATAATTTTGAACTAATTAAGTAGGGCTAAGGGTTGATAGCGGTCTAGTTTTCTTTAGATAAAATTCATCCAACTTGGATTGTAACATCATCGATCACCCGTGTTAAATATCATCCTCTATTACATAACCATTACACCGAGTAAATTTGAAAGTACGAGATTTCACGAAAAAAATTAGGTTTCTACAAATACTATTGGTTTGAAGTAAGGTTGAAAGTGAAAATGAAAACGAGTATGATTGCTTTGCGTAATGGGAAACATATAATGAGCAATGATGAGACGGGGACGACGGCACTCAACATTGTCTAGTGAAGCTCAACATCATGAGATTAATATATTTCTTCTTCCACTTCAATTTGGATATCTTTATAGAGAGCCTATAGGTCTCTATACTTCCTTCTTTGCTTTCACCTGCGGTGAAGTTTGATTTAAGATTTTGTAAGCCCTAACTCGATATAGGGTTTTATTTATATTCATTTTCAACCGACATTTAAGTTTCTGTCTATTTGGTCTCTAAACTTTATAGATATAGGGGTTTTAAAACACGTCTAAGGTTCCACACCCTTATAAGGAATGTTTCGCTCTCCTCATTCACCTCTTACGTTTTAAAACGCGTCTAGGGTTCCACCATTCTCCTCGTTTCGTCTAGGATTCCACACCCTTATAAGAAATGTTTCGTTCTTCTCATGGTTTTAAAACGTGTCTAGGGTTCCACACCCTTATAAGGAATGTTTTGATCTCCTCGTTCACCTCTCACCGTTTTAAAACGCGTCTAGGGTTCCACCATTCCCCTCGTTTCGTCTAGGATTCCATACCCTTATAAGAAATGTTTCGTTCTCCTCATGGTTTTAAAGCGTGTCTAGGGTTGCACACCCTTATAAGGAATGGTTTGATCCCCTCTCACGGTTTTAAAACGCATCTAGGGTTCCACTGTTCCCCTCTCACGGTTTTAAACGCGTCTAGGCTTCCACTATTCCCCTTGTTCCGTCTAGGATTCCACACCATTGTAAGGAAATGTTTTATTCTCCTAAAAACGCATCTAGGGTTCCACACCCTTATATGAAATGTTTTGTTCCTCTCATTCCCCTCTCCAACCAATGTGGGATCTCACAGTTTTAAAACGTGTCTACTGGGGAGAGGTTTCCATACCCTTATAAGGAATCCCCTTGGGAGCAACTCCGGTGTCTGTCTCTAATACCATTTGTAACAACCCAAAGTCTCATGATTTTAAAATGCATCAACTAGGAAGAGGTTTCAACACTTTCATAAGAAATGTTTCGTTTTTTTCTCTCTAACCAATGTGGGATGTCATATAGTGTCTCATATACACTCGACTTATACCACTTCCTAACTTATTATATAAAATTAAAATTTTAAAATTTTATTGGATATAAAATTCAAATAAATCTGCTGATTTTTAAAATATTTGAATATTTCTTATACTTGTTAAAAATTTAATTTATTGTTATAAATTAAAATTAATACTAATTTTCATTTGATTTAAAGAGGTTTTGAATGATTAGTATATGTTATTTAGTGTGATTTTAGAACCATAAAATTTATTAAAAAAAGAATTACATTTGAGAAATTAAAAAAAAAAATAGATTGAAAAAAAAAAAAGGGGGATAAAATAAAAAATCTGGCCACTCTGTTTCTTCCAGTTTTTTTGCCGCCATTTCAACTGCTTACCAGATCAACCATTCTAGGGTTTCGCATTTGGCGAGGAAGGAAAAGCGGACCGAGATAGATTGGTTTGACAGAGAGATTGAGGGAGATGGAATGACGAACAAATTAATTAATCAGATGAGATTACCGAAATCGATAACTAATATTTTCGCAGAGCGAATTATTAACACAGCCAAGGTAATGATTGAACTTCGTGTATCTTCTTCATTAATTCCTCGATTTATTCGTCCAGTTCGTGTTTAATACGCCATAGGAACCGATGTGAAGCTTTCAATTATGTAGTTTAGGCTAACTTCTTTTTTCAGTTTCTCGATTGACTGCTAATTGGAATTTCTTTACGTAGAAATTGAACAATGGCAATGGTTCTTAATTTAGACTTGGTTCATAATGTCACGTATTGAACGAGAGTTTCTCTTTTGAAATATTTTTCCAGGCTTGTTCTCTGTTCTTGGTTGGATTAGTTTTCAGCCCTGGTGCCGGTTCTAGTCTATAGAAAATTAAATTGCAGTATTGGTTTATTTAATTTGTGTCAGGAAGCTTTATCCTTAACTGAATTTGAGTTGATGGAGTTATTGGACGTGGGATTATTGGAAGTTGCATCAGCAGTTGCGCACATTATTTAA

mRNA sequence

ATGGCTAAGGCTATGGCTAAGCTAAGTTTTTTTGCCGCCATTTCAACTGCTTACCAGATCAACCATTCTAGGGTTTCGCATTTGGCGAGGAAGGAAAAGCGGACCGAGATAGATTGGTTTGACAGAGAGATTGAGGGAGATGGAATGACGAACAAATTAATTAATCAGATGAGATTACCGAAATCGATAACTAATATTTTCGCAGAGCGAATTATTAACACAGCCAAGGAAGCTTTATCCTTAACTGAATTTGAGTTGATGGAGTTATTGGACGTGGGATTATTGGAAGTTGCATCAGCAGTTGCGCACATTATTTAA

Coding sequence (CDS)

ATGGCTAAGGCTATGGCTAAGCTAAGTTTTTTTGCCGCCATTTCAACTGCTTACCAGATCAACCATTCTAGGGTTTCGCATTTGGCGAGGAAGGAAAAGCGGACCGAGATAGATTGGTTTGACAGAGAGATTGAGGGAGATGGAATGACGAACAAATTAATTAATCAGATGAGATTACCGAAATCGATAACTAATATTTTCGCAGAGCGAATTATTAACACAGCCAAGGAAGCTTTATCCTTAACTGAATTTGAGTTGATGGAGTTATTGGACGTGGGATTATTGGAAGTTGCATCAGCAGTTGCGCACATTATTTAA

Protein sequence

MAKAMAKLSFFAAISTAYQINHSRVSHLARKEKRTEIDWFDREIEGDGMTNKLINQMRLPKSITNIFAERIINTAKEALSLTEFELMELLDVGLLEVASAVAHII
Homology
[Close]
BLAST of CmaCh02G008610.1 vs. Swiss-Prot
Match: RA51B_ARATH (DNA repair protein RAD51 homolog 2 OS=Arabidopsis thaliana GN=RAD51B PE=2 SV=2)

HSP 1 Score: 66.6 bits (161), Expect = 1.8e-10
Identity = 36/56 (64.29%), Postives = 44/56 (78.57%), Query Frame = 1 

Query: 49  MTNKLINQMRLPKSITNIFAERIINTAKEALSLTEFELMELLDVGLLEVASAVAHI 105
           M NKLI +M L   I+NIFA R I TAK+ALS+TEFELMELLDVG+ E+ SA++ I
Sbjct: 1   MANKLIGEMGLHTKISNIFAARNIITAKDALSMTEFELMELLDVGMKEIRSAISFI 56

[Close]
BLAST of CmaCh02G008610.1 vs. TrEMBL
Match: A0A0A0KFZ1_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_6G296460 PE=4 SV=1)

HSP 1 Score: 88.2 bits (217), Expect = 6.5e-15
Identity = 48/56 (85.71%), Postives = 50/56 (89.29%), Query Frame = 1 

Query: 49  MTNKLINQMRLPKSITNIFAERIINTAKEALSLTEFELMELLDVGLLEVASAVAHI 105
           M N+LINQM LP+SI NIFA R INTAKEALSLTEFELMELLDVGL EVASAVAHI
Sbjct: 1   MANRLINQMGLPRSIANIFAARNINTAKEALSLTEFELMELLDVGLSEVASAVAHI 56

[Close]
BLAST of CmaCh02G008610.1 vs. TrEMBL
Match: G7IU37_MEDTR (DNA repair RAD51-like protein OS=Medicago truncatula GN=MTR_2g093050 PE=4 SV=2)

HSP 1 Score: 79.7 bits (195), Expect = 2.3e-12
Identity = 43/56 (76.79%), Postives = 47/56 (83.93%), Query Frame = 1 

Query: 49  MTNKLINQMRLPKSITNIFAERIINTAKEALSLTEFELMELLDVGLLEVASAVAHI 105
           M NKLINQ+ LPKSI NIF  R I TAK+ALSLTEFELMELLDVG+ EV SA+AHI
Sbjct: 1   MANKLINQLGLPKSIANIFTARNIITAKDALSLTEFELMELLDVGMSEVTSAMAHI 56

[Close]
BLAST of CmaCh02G008610.1 vs. TrEMBL
Match: A5AWA4_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_001338 PE=4 SV=1)

HSP 1 Score: 79.0 bits (193), Expect = 3.9e-12
Identity = 43/56 (76.79%), Postives = 46/56 (82.14%), Query Frame = 1 

Query: 49  MTNKLINQMRLPKSITNIFAERIINTAKEALSLTEFELMELLDVGLLEVASAVAHI 105
           M NKLI++M LP SI NIFA R I TAKEALSLTEFELMELLDVG+  V SAVAHI
Sbjct: 1   MANKLISEMGLPTSIANIFAARNITTAKEALSLTEFELMELLDVGMARVTSAVAHI 56

[Close]
BLAST of CmaCh02G008610.1 vs. TrEMBL
Match: D7SKR1_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VIT_06s0004g03600 PE=4 SV=1)

HSP 1 Score: 79.0 bits (193), Expect = 3.9e-12
Identity = 43/56 (76.79%), Postives = 46/56 (82.14%), Query Frame = 1 

Query: 49  MTNKLINQMRLPKSITNIFAERIINTAKEALSLTEFELMELLDVGLLEVASAVAHI 105
           M NKLI++M LP SI NIFA R I TAKEALSLTEFELMELLDVG+  V SAVAHI
Sbjct: 1   MANKLISEMGLPTSIANIFAARNITTAKEALSLTEFELMELLDVGMARVTSAVAHI 56

[Close]
BLAST of CmaCh02G008610.1 vs. TrEMBL
Match: A0A067L6T9_JATCU (Uncharacterized protein OS=Jatropha curcas GN=JCGZ_05604 PE=4 SV=1)

HSP 1 Score: 79.0 bits (193), Expect = 3.9e-12
Identity = 43/56 (76.79%), Postives = 47/56 (83.93%), Query Frame = 1 

Query: 49  MTNKLINQMRLPKSITNIFAERIINTAKEALSLTEFELMELLDVGLLEVASAVAHI 105
           M NKLI++M LPKSI NIFA R I TAK+ALSLTEFELMELLDV L +V SAVAHI
Sbjct: 1   MANKLISEMGLPKSIANIFAARNIKTAKDALSLTEFELMELLDVALADVKSAVAHI 56

[Close]
BLAST of CmaCh02G008610.1 vs. TAIR10
Match: AT2G28560.1 (AT2G28560.1 DNA repair (Rad51) family protein)

HSP 1 Score: 66.6 bits (161), Expect = 1.0e-11
Identity = 36/56 (64.29%), Postives = 44/56 (78.57%), Query Frame = 1 

Query: 49  MTNKLINQMRLPKSITNIFAERIINTAKEALSLTEFELMELLDVGLLEVASAVAHI 105
           M NKLI +M L   I+NIFA R I TAK+ALS+TEFELMELLDVG+ E+ SA++ I
Sbjct: 1   MANKLIGEMGLHTKISNIFAARNIITAKDALSMTEFELMELLDVGMKEIRSAISFI 56

[Close]
BLAST of CmaCh02G008610.1 vs. NCBI nr
Match: gi|449463635|ref|XP_004149537.1| (PREDICTED: DNA repair protein RAD51 homolog 2 isoform X1 [Cucumis sativus])

HSP 1 Score: 88.2 bits (217), Expect = 9.3e-15
Identity = 48/56 (85.71%), Postives = 50/56 (89.29%), Query Frame = 1 

Query: 49  MTNKLINQMRLPKSITNIFAERIINTAKEALSLTEFELMELLDVGLLEVASAVAHI 105
           M N+LINQM LP+SI NIFA R INTAKEALSLTEFELMELLDVGL EVASAVAHI
Sbjct: 1   MANRLINQMGLPRSIANIFAARNINTAKEALSLTEFELMELLDVGLSEVASAVAHI 56

[Close]
BLAST of CmaCh02G008610.1 vs. NCBI nr
Match: gi|659127776|ref|XP_008463884.1| (PREDICTED: DNA repair protein RAD51 homolog 2 isoform X2 [Cucumis melo])

HSP 1 Score: 87.0 bits (214), Expect = 2.1e-14
Identity = 47/56 (83.93%), Postives = 50/56 (89.29%), Query Frame = 1 

Query: 49  MTNKLINQMRLPKSITNIFAERIINTAKEALSLTEFELMELLDVGLLEVASAVAHI 105
           M N+LINQM LP+SI NIFA R INTAKEALSLTEFELMELLDVGL +VASAVAHI
Sbjct: 1   MANRLINQMGLPRSIANIFAARNINTAKEALSLTEFELMELLDVGLSDVASAVAHI 56

[Close]
BLAST of CmaCh02G008610.1 vs. NCBI nr
Match: gi|828288767|ref|XP_012570501.1| (PREDICTED: DNA repair protein RAD51 homolog 2 isoform X2 [Cicer arietinum])

HSP 1 Score: 83.2 bits (204), Expect = 3.0e-13
Identity = 45/56 (80.36%), Postives = 48/56 (85.71%), Query Frame = 1 

Query: 49  MTNKLINQMRLPKSITNIFAERIINTAKEALSLTEFELMELLDVGLLEVASAVAHI 105
           M NKLINQM LPKSI NIFA R I TAK+ALSLTEFELMELLDVG+ EV SA+AHI
Sbjct: 1   MANKLINQMALPKSIANIFAARNIITAKDALSLTEFELMELLDVGMAEVTSAMAHI 56

[Close]
BLAST of CmaCh02G008610.1 vs. NCBI nr
Match: gi|502082384|ref|XP_004487150.1| (PREDICTED: DNA repair protein RAD51 homolog 2 isoform X1 [Cicer arietinum])

HSP 1 Score: 83.2 bits (204), Expect = 3.0e-13
Identity = 45/56 (80.36%), Postives = 48/56 (85.71%), Query Frame = 1 

Query: 49  MTNKLINQMRLPKSITNIFAERIINTAKEALSLTEFELMELLDVGLLEVASAVAHI 105
           M NKLINQM LPKSI NIFA R I TAK+ALSLTEFELMELLDVG+ EV SA+AHI
Sbjct: 1   MANKLINQMALPKSIANIFAARNIITAKDALSLTEFELMELLDVGMAEVTSAMAHI 56

[Close]
BLAST of CmaCh02G008610.1 vs. NCBI nr
Match: gi|922386910|ref|XP_003597136.2| (DNA repair RAD51-like protein [Medicago truncatula])

HSP 1 Score: 79.7 bits (195), Expect = 3.3e-12
Identity = 43/56 (76.79%), Postives = 47/56 (83.93%), Query Frame = 1 

Query: 49  MTNKLINQMRLPKSITNIFAERIINTAKEALSLTEFELMELLDVGLLEVASAVAHI 105
           M NKLINQ+ LPKSI NIF  R I TAK+ALSLTEFELMELLDVG+ EV SA+AHI
Sbjct: 1   MANKLINQLGLPKSIANIFTARNIITAKDALSLTEFELMELLDVGMSEVTSAMAHI 56

The following BLAST results are available for this feature:
BLAST of CmaCh02G008610.1 vs. Swiss-Prot
Match NameE-valueIdentityDescription
RA51B_ARATH1.8e-1064.29DNA repair protein RAD51 homolog 2 OS=Arabidopsis thaliana GN=RAD51B PE=2 SV=2[more]
BLAST of CmaCh02G008610.1 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0KFZ1_CUCSA6.5e-1585.71Uncharacterized protein OS=Cucumis sativus GN=Csa_6G296460 PE=4 SV=1[more]
G7IU37_MEDTR2.3e-1276.79DNA repair RAD51-like protein OS=Medicago truncatula GN=MTR_2g093050 PE=4 SV=2[more]
A5AWA4_VITVI3.9e-1276.79Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_001338 PE=4 SV=1[more]
D7SKR1_VITVI3.9e-1276.79Putative uncharacterized protein OS=Vitis vinifera GN=VIT_06s0004g03600 PE=4 SV=... [more]
A0A067L6T9_JATCU3.9e-1276.79Uncharacterized protein OS=Jatropha curcas GN=JCGZ_05604 PE=4 SV=1[more]
BLAST of CmaCh02G008610.1 vs. TAIR10
Match NameE-valueIdentityDescription
AT2G28560.11.0e-1164.29 DNA repair (Rad51) family protein[more]
BLAST of CmaCh02G008610.1 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|449463635|ref|XP_004149537.1|9.3e-1585.71PREDICTED: DNA repair protein RAD51 homolog 2 isoform X1 [Cucumis sativus][more]
gi|659127776|ref|XP_008463884.1|2.1e-1483.93PREDICTED: DNA repair protein RAD51 homolog 2 isoform X2 [Cucumis melo][more]
gi|828288767|ref|XP_012570501.1|3.0e-1380.36PREDICTED: DNA repair protein RAD51 homolog 2 isoform X2 [Cicer arietinum][more]
gi|502082384|ref|XP_004487150.1|3.0e-1380.36PREDICTED: DNA repair protein RAD51 homolog 2 isoform X1 [Cicer arietinum][more]
gi|922386910|ref|XP_003597136.2|3.3e-1276.79DNA repair RAD51-like protein [Medicago truncatula][more]
Annotated Terms
The following terms have been associated with this mRNA:
Vocabulary: INTERPRO
TermDefinition
Vocabulary: Biological Process
TermDefinition
GO:0000724double-strand break repair via homologous recombination
GO:0006281DNA repair
Vocabulary: Molecular Function
TermDefinition
GO:0003677DNA binding
Vocabulary: Cellular Component
TermDefinition
GO:0033063Rad51B-Rad51C-Rad51D-XRCC2 complex
GO Annotation
GO Assignments
This mRNA is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0006281 DNA repair
biological_process GO:0000724 double-strand break repair via homologous recombination
cellular_component GO:0033063 Rad51B-Rad51C-Rad51D-XRCC2 complex
molecular_function GO:0003677 DNA binding
molecular_function GO:0005524 ATP binding
molecular_function GO:0008094 DNA-dependent ATPase activity
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameType
CmaCh02G008610CmaCh02G008610gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameType
CmaCh02G008610.1CmaCh02G008610.1-proteinpolypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameType
CmaCh02G008610.1.CDS.3CmaCh02G008610.1.CDS.3CDS
CmaCh02G008610.1.CDS.2CmaCh02G008610.1.CDS.2CDS
CmaCh02G008610.1.CDS.1CmaCh02G008610.1.CDS.1CDS


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameType
CmaCh02G008610.1.exon.3CmaCh02G008610.1.exon.3exon
CmaCh02G008610.1.exon.2CmaCh02G008610.1.exon.2exon
CmaCh02G008610.1.exon.1CmaCh02G008610.1.exon.1exon


InterPro
Analysis Name: InterPro Annotations of Cucurbita maxima
Date Performed: 2017-05-20
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePANTHERPTHR22942RECA/RAD51/RADA DNA STRAND-PAIRING FAMILY MEMBERcoord: 47..104
score: 8.8