CmaCh01G015180.1 (mRNA) Cucurbita maxima (Rimu) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CmaCh01G015180.1
Type	mRNA
Organism	Cucurbita maxima (Cucurbita maxima (Rimu))
Description	ER membrane protein complex subunit-like protein
Location	Cma_Chr01 : 10638469 .. 10642732 (+)
Sequence length	1026

Genome Viewer

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

AAAAAGAATAAACTAAAAATGAAATCAGATGGGATCGAGAGAGAGTAAAATCCTTTCTCCTTGGAAGAACCTTGAGGAAGCTTAGAACGCGAGGACCGAGATCTTCCCTGTTCCGAACCGTCCGCCGTAGAAGAATCATCGAAAATGCGATCCCAAGCTTCCGTTCTCTTACTGTTACTCCAGCTTTTCTTCTCTCTGTTGTCTCCGTCTCATGCGATTTCCACTGGGTAGGTCTTGGTGCTTTGTTTTTAATTCACTGTGACTTTGTTTGTGCTCGAATTATCAGGAACATGGATTTAGTATGTTATGATCGATGATTCTGTCGATTTAGTTTCCGCAGTTGTCTCTATTATTGTCTTTTATCTCGTTGTTGTGTTTCGCAGGTCCGGCGATGGATACACCATCTATGGTCGCGTGAAGATTGCGGGTTTGTTTCTTCTTTTTCTTATTCTACGTAGTTCTGAATGTTTTTTGATACAGGGATTCAAGATAGAGTTGTTGCTTCTTCTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTTTTTTTTTTTTTTTTTTTTTTTTCTTGAAGAAAGTTGTTTGTTGGAAAACGAGAATTACAGAAGAGGAAATGAAGAGAAGGTACTTTAACCTAATTTACATTGATAAGTAAGGAAGAATAATTACCAGAAGCACTTCGTAGTGTGGCAATGGAAAAAAAATAATATCTTACATCTGACCATGTTCTTATCGCTCACAGATTCCTATCTAATGAAATCTTCCCACCTCAGTGAACTTAGGCCTTTTCCTTGGCAGGTATTTCTGAATAAGATCACTAAACCAATATTGTGTGGGAAACACAAAATAAACGGTGAATTTCCCCAAAATTGCCGACCAAAAGTGTTGGAGATGTTCTTCAGATCTTGTTTTTTGGCAATGGCAAGAACAATCCACCCTCCTTCCAATGTTCCATCAAGCTCCCCTCCCATGAATTCTTTTTTGAAATATTGCAGAAATGGACAGGAACATCTTTTTTTAATTAGAAAATAGTTAGGAAGGCTGGTCAATCCTGGTAATTAATGTAAATCTCTTCCCGTAGAAGTTAGCTAAATTTCACTGAAATCTTTCTGCCATAGGTGTCCAAAAGTCCTTTCTTCCACGGTTGCCTAGATGGTTAAGGTCGAAGTAAGTTATGGGCCGAAGAACTGCAGCATGTCTATAGGACTCTGCAAGATTATCCACTTCATCCTTGAGATAATTTTCCCCCTCCACCAGGAACTCAAGGTGTCCACATTAAAATAGTGATGTTGCTTTGATAATTCTGGTATACATTATCTGCATCTAGGTAGTTGGATTGAAATGCGAAAAAAAAGTTTTTCAGATCCCCGCCTTACTAATTTGTAGATCCGCATAAATCTGTCATTTTGGAGGAGAGGAAAGTCGGCTATGTTTAGGGTTTAGGGTTTAGGGTTTGTAGCATTTGTATTCTTCACTCGTTTCACATGAGGCATGTACGGATGTAGCTTTTACCTAGCATTATGATGATTTATTCTTATTACAGGTTAGCATTATGAAGATTAAAATTGTCAACTCAACGATATTCGGAATGAATGTTAAATTTGCTTGAGATTTTATGATTAGATGGTTCTGGTTATATTCTGAGCTAATTCATCCTATTGAGCTTTTGGCAGGCAACGCTCTTAAAGGGTATGGGCTTCCTGGAAAAATATCGAACATTAAGGTCATACTTGATGGTGGCCAAAGAATTACCTACTTGAGACCGGACGGATATTTTTCATTGTATCCTTTATATGCTTTGAGTTAATCGAAACTGCCTCGAAATTAAGGAGTTATATTACTTTTAGCCTTATTGGTTTGCTCCTTTTGTGAATTAAATTATCTGCACTGGTCATTTATATAATTCTCAATTGGATATAGCGCTTGATTTTAGCTTGTTTGTTGCTTTACGGTAGTTAGTGTTAATCGTTTTGGAGAATTACCCAACAAAATTTGGCCTTACTAATTTACAAACAGGTCTCGTGCAAATTGTTTCTAAGGTTCATTGTAATGCCTTAACTTCTTAAAAGCTATAATGTGCCAGCAGGAACTCATCTGATTGAAGTGGCTGCATTGGGCTATTTCTTTTCTCCTGTGGGTTTTCATTTTCTTCCATTAGCTCTCTCAGACTTTCTAAAAATCCGGTTTCATGTGACTCATTTTTCTTGTTCATTTTATATTAGGTTCGAGTTGATGTTAGCGCTAGAAACCCAGGTAAGGTTCAGGCCGCCCTAACAGAGAACAGGCGGGCATTGAGTGAGCTTGTTTTAGAGCCTTTAAGAGATGAAGAGTATTATGAGGTTTGTTCAGCATAACCTCCTCTTTTTATTTTCCTTTTCATGGACTATAGATTATAGAGTTTTATCCTCTTGATTTCACTTTATTTCTCTATCTCTTCGCATTACAGATTCGAGAACCGTTCTCCATAATGTCTGTTGTGAAAAGTCCCATGGGTCTGATGATGGGATTCATGATACTTGTTGTATTCCTGATGCCCAAGTTAATGGAGAACATAGGTACTTACTCATTTTCTCATTAGCCGGTTATCAATATCTTCACATTCTATTTATGATTCTCAAGCTTGAACTAGCTGTAGAATGGGTATGTTCCTGATTAATCTTTAGACACTTGGGTTAGAGGATTATTGGGAGGGAGTCCTACGTTGGCTAATTTAGGGGTCGATCATGAATTTATAAGGAATACATCTCCATTATATGAGGCTTTTTGAGGAAACAAAAAACAAAGCCAGAGCTTATGCTCAAAGTGGACAATATCATACTATTGTAGAGATCCGTGATTCCTAACATGGTATCAAAGTCATGCCCTTAACTTAGTTATGCTAATCGAGTCCTCAAGTGTTGAACAAAGATGTTGCTAGCCTCGAAAGTGCAAAGTGACTTAAGTGTCGAACAAATGAGGTATTTTGTTTGAGGGCTCCAAAGAAAGGAGTCGAGCCTCGATTAAAAGGAGGCTGTTTGAAGGCTACATAGGCCTCAATGAAGGCTCTATGGTGTATTTTGTTCAAGAGGAGGATTGTTGAGCATTGCTGGGAGGGAGTCCCATGTTAGCTAATTTAGGGGTTGATCATAGGTTTATAAGGAATACATCTCCATTGGTTTGAGGCATTTTGGAAAAACCAAAAACAAATCCATGAGAGCTTATGCTTAAAGTGGCCAATATCGTACCATTGTGGATATCCGTGATTCCTAACCCTTGGTCACTGTGATAGATGATTATTTCTCATGCCAAATTTTTTGGCAAAAGTTTCAAACTAGTTATGTTGCTAATATCTTGCCCTTCTGATGAACCTGCAACTTCATTCGGTTCATCATAACAAATCGAATGGGAAAGTTCATGTTATTGGTTCCAATCAGCAATGTCTTGATCTGCCTCGAGACAGAAAACTCGAGCTAATTCAATTCGATCATATAAATGAATGAGTTTCTTCCCATCTCTGATTGCATGATTTTGTGATGTCCCAATGATCAGATCCTGAAGAAATGAGGAGAGCACAAGAAGAAATGAGGAACCAAGGCGTCCCGACCTTATCAAGCTTGCTACCCGGGGCTGGCCGGAGCAGTTAAAAAGGTCGATTTCGATACCGACTACATCCCCAGCTCAAATGCATCCAAGTCCTGCAGGAAGAAATCGGGATTTCTAACACTCGGAAGCAAATGAGCGTAATCATCTAGTTGCTCCGATAATACCATTCTGGCCAAAACACAACTGGGATAAACTCGACTTGTTTGTGTTCGTTTTGATTATGATACGCATCATCATCATCATCAATTAGACATTAGTTTGGTCTGGATTTCATCATCATTCTTAAAACGAGTCTCTTAGTAGAGTTATGTAAACGACCATTATCTGTCACCCATTTTGGATGAAACATTATTTTGATACTTCATTTTTATATTACTTAATATTTTTCCTTTTTATTATATACATATATATATTAATATTTATTT

mRNA sequence

AAAAAGAATAAACTAAAAATGAAATCAGATGGGATCGAGAGAGAGTAAAATCCTTTCTCCTTGGAAGAACCTTGAGGAAGCTTAGAACGCGAGGACCGAGATCTTCCCTGTTCCGAACCGTCCGCCGTAGAAGAATCATCGAAAATGCGATCCCAAGCTTCCGTTCTCTTACTGTTACTCCAGCTTTTCTTCTCTCTGTTGTCTCCGTCTCATGCGATTTCCACTGGGTCCGGCGATGGATACACCATCTATGGTCGCGTGAAGATTGCGGGCAACGCTCTTAAAGGGTATGGGCTTCCTGGAAAAATATCGAACATTAAGGTTCGAGTTGATGTTAGCGCTAGAAACCCAGGTAAGGTTCAGGCCGCCCTAACAGAGAACAGGCGGGCATTGAGTGAGCTTGTTTTAGAGCCTTTAAGAGATGAAGAGTATTATGAGATTCGAGAACCGTTCTCCATAATGTCTGTTGTGAAAAGTCCCATGGGTCTGATGATGGGATTCATGATACTTGTTGTATTCCTGATGCCCAAGTTAATGGAGAACATAGATCCTGAAGAAATGAGGAGAGCACAAGAAGAAATGAGGAACCAAGGCGTCCCGACCTTATCAAGCTTGCTACCCGGGGCTGGCCGGAGCAGTTAAAAAGGTCGATTTCGATACCGACTACATCCCCAGCTCAAATGCATCCAAGTCCTGCAGGAAGAAATCGGGATTTCTAACACTCGGAAGCAAATGAGCGTAATCATCTAGTTGCTCCGATAATACCATTCTGGCCAAAACACAACTGGGATAAACTCGACTTGTTTGTGTTCGTTTTGATTATGATACGCATCATCATCATCATCAATTAGACATTAGTTTGGTCTGGATTTCATCATCATTCTTAAAACGAGTCTCTTAGTAGAGTTATGTAAACGACCATTATCTGTCACCCATTTTGGATGAAACATTATTTTGATACTTCATTTTTATATTACTTAATATTTTTCCTTTTTATTATATACATATATATATTAATATTTATTT

Coding sequence (CDS)

ATGCGATCCCAAGCTTCCGTTCTCTTACTGTTACTCCAGCTTTTCTTCTCTCTGTTGTCTCCGTCTCATGCGATTTCCACTGGGTCCGGCGATGGATACACCATCTATGGTCGCGTGAAGATTGCGGGCAACGCTCTTAAAGGGTATGGGCTTCCTGGAAAAATATCGAACATTAAGGTTCGAGTTGATGTTAGCGCTAGAAACCCAGGTAAGGTTCAGGCCGCCCTAACAGAGAACAGGCGGGCATTGAGTGAGCTTGTTTTAGAGCCTTTAAGAGATGAAGAGTATTATGAGATTCGAGAACCGTTCTCCATAATGTCTGTTGTGAAAAGTCCCATGGGTCTGATGATGGGATTCATGATACTTGTTGTATTCCTGATGCCCAAGTTAATGGAGAACATAGATCCTGAAGAAATGAGGAGAGCACAAGAAGAAATGAGGAACCAAGGCGTCCCGACCTTATCAAGCTTGCTACCCGGGGCTGGCCGGAGCAGTTAA

Protein sequence

MRSQASVLLLLLQLFFSLLSPSHAISTGSGDGYTIYGRVKIAGNALKGYGLPGKISNIKVRVDVSARNPGKVQAALTENRRALSELVLEPLRDEEYYEIREPFSIMSVVKSPMGLMMGFMILVVFLMPKLMENIDPEEMRRAQEEMRNQGVPTLSSLLPGAGRSS

Homology

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BLAST of CmaCh01G015180.1 vs. Swiss-Prot
Match: Y4213_ARATH (ER membrane protein complex subunit 7 homolog OS=Arabidopsis thaliana GN=At4g32130 PE=2 SV=1)

HSP 1 Score: 166.4 bits (420), Expect = 2.6e-40
Identity = 87/131 (66.41%), Postives = 108/131 (82.44%), Query Frame = 1


Query: 31  DGYTIYGRVKIAGNALKGYGLPGKISNIKVRVDVSARNPGKVQAALTENRRALSELVLEP 90
           DGY  + +V    + ++ Y L    S   VRVDVSAR+ GKVQA LTE RR+L+ELVLEP
Sbjct: 73  DGYFTFHKVPAGTHLIEVYALGYFFS--PVRVDVSARHRGKVQATLTETRRSLTELVLEP 132

Query: 91  LRDEEYYEIREPFSIMSVVKSPMGLMMGFMILVVFLMPKLMENIDPEEMRRAQEEMRNQG 150
           LR E+YYE+REPFS+MS+VKSPMGLM+GFM++VVFLMPKLMENIDPEEM+ AQE+MR+QG
Sbjct: 133 LRAEQYYEMREPFSVMSIVKSPMGLMVGFMVVVVFLMPKLMENIDPEEMKSAQEQMRSQG 192

Query: 151 VPTLSSLLPGA 162
           VP+L+SLLP +
Sbjct: 193 VPSLTSLLPAS 201

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BLAST of CmaCh01G015180.1 vs. TrEMBL
Match: V4UHB4_9ROSI (Uncharacterized protein OS=Citrus clementina GN=CICLE_v10009464mg PE=4 SV=1)

HSP 1 Score: 217.6 bits (553), Expect = 1.1e-53
Identity = 119/193 (61.66%), Postives = 148/193 (76.68%), Query Frame = 1


Query: 1   MRSQASVLLLLLQLFFSLLSPSHAISTGSGDGYTIYGRVKIAGNALKGYGLP-GKISNIK 60
           +RS++ + +  + LF SL+S + A+S+GSGDG++I GRVK+ G +LK +G P GK SN+K
Sbjct: 5   IRSKSVLSVFFINLFLSLVSSAVAVSSGSGDGFSISGRVKLPGMSLKAFGSPGGKASNVK 64

Query: 61  ----------------------------VRVDVSARNPGKVQAALTENRRALSELVLEPL 120
                                       VRVDVSAR+PGKVQAALTE RR L+ELVLEPL
Sbjct: 65  VVLNGGEHNMSAGTHLIEVAAIGYFFSPVRVDVSARHPGKVQAALTETRRGLNELVLEPL 124

Query: 121 RDEEYYEIREPFSIMSVVKSPMGLMMGFMILVVFLMPKLMENIDPEEMRRAQEEMRNQGV 165
           R+E+YYEIREPFSIMS+VKSPMGLMMGFM++VVFLMPKLMEN+DPEEMRRAQEEMR+QGV
Sbjct: 125 REEQYYEIREPFSIMSLVKSPMGLMMGFMLVVVFLMPKLMENMDPEEMRRAQEEMRSQGV 184

[Close]

BLAST of CmaCh01G015180.1 vs. TrEMBL
Match: A0A0A0LH88_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_3G876010 PE=4 SV=1)

HSP 1 Score: 214.2 bits (544), Expect = 1.2e-52
Identity = 130/206 (63.11%), Postives = 142/206 (68.93%), Query Frame = 1


Query: 1   MRSQASVLLLLLQLFFSLLSPSHAISTGSGDG---------------------------Y 60
           MRSQ   LLL LQLFFSLL+ SHAIS+GSGDG                            
Sbjct: 1   MRSQLFFLLLSLQLFFSLLTSSHAISSGSGDGYTIYGRVKIPSNTLKGFGLPGKTSNIKV 60

Query: 61  TIYGRVKIAGNALKGY----GLPGKISNIK----------VRVDVSARNPGKVQAALTEN 120
            + G  ++      GY     +P     I+          VRVDVSARNPGKVQAALTEN
Sbjct: 61  ILNGGQRVTFLRPDGYFSFHNVPAGTHLIEVAALGSFFSPVRVDVSARNPGKVQAALTEN 120

Query: 121 RRALSELVLEPLRDEEYYEIREPFSIMSVVKSPMGLMMGFMILVVFLMPKLMENIDPEEM 166
           RR LSELVLEPLRDEEYYE+REPF+IMSVVKSPMGLM+GFM++VVFLMPKLMENIDPEEM
Sbjct: 121 RRVLSELVLEPLRDEEYYEVREPFNIMSVVKSPMGLMVGFMVIVVFLMPKLMENIDPEEM 180

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BLAST of CmaCh01G015180.1 vs. TrEMBL
Match: M5XM77_PRUPE (Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa011475mg PE=4 SV=1)

HSP 1 Score: 191.4 bits (485), Expect = 8.6e-46
Identity = 116/204 (56.86%), Postives = 140/204 (68.63%), Query Frame = 1


Query: 2   RSQASVLLLLLQLFFSLLSPSHAISTGSGD----------------GYTIYGR---VKIA 61
           RS+ ++L+L +QL FSL+S S AIS GS D                GY +Y +   VK+ 
Sbjct: 6   RSKPAILVLFIQLCFSLISSSLAISPGSADGYTIHGRVKIHSMGAKGYGLYQKTSNVKVI 65

Query: 62  GNALKG------------YGLPGKISNIK----------VRVDVSARNPGKVQAALTENR 121
            NA +             + +P     I+          VRVDVSARNPGKVQAALTENR
Sbjct: 66  LNAGQSVTFLRPDGFFSFHNVPAGTHLIEVTAIGYFFSPVRVDVSARNPGKVQAALTENR 125

Query: 122 RALSELVLEPLRDEEYYEIREPFSIMSVVKSPMGLMMGFMILVVFLMPKLMENIDPEEMR 165
           R L+E VLEPLR+E+YYEIREPFSIMS+VKSPMGLM+GFM++VVFLMPKL+EN+DPEEMR
Sbjct: 126 RGLNEFVLEPLREEQYYEIREPFSIMSLVKSPMGLMVGFMVVVVFLMPKLVENMDPEEMR 185

[Close]

BLAST of CmaCh01G015180.1 vs. TrEMBL
Match: A0A0D2PHW0_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_001G035100 PE=4 SV=1)

HSP 1 Score: 186.4 bits (472), Expect = 2.8e-44
Identity = 94/105 (89.52%), Postives = 103/105 (98.10%), Query Frame = 1


Query: 60  VRVDVSARNPGKVQAALTENRRALSELVLEPLRDEEYYEIREPFSIMSVVKSPMGLMMGF 119
           VRVDVSARNPGKVQAALTENRR LSELVLEPLRDE+YYEIREPFSIMSVVKSPMGLM+GF
Sbjct: 91  VRVDVSARNPGKVQAALTENRRGLSELVLEPLRDEQYYEIREPFSIMSVVKSPMGLMVGF 150

Query: 120 MILVVFLMPKLMENIDPEEMRRAQEEMRNQGVPTLSSLLPGAGRS 165
           M++VVFLMPKL+EN+DPEEMRRAQEEMRNQGVP+L+SLLPG GR+
Sbjct: 151 MLVVVFLMPKLVENMDPEEMRRAQEEMRNQGVPSLASLLPGGGRN 195

[Close]

BLAST of CmaCh01G015180.1 vs. TrEMBL
Match: A0A0B0MQY2_GOSAR (Uncharacterized protein OS=Gossypium arboreum GN=F383_29399 PE=4 SV=1)

HSP 1 Score: 186.4 bits (472), Expect = 2.8e-44
Identity = 94/105 (89.52%), Postives = 103/105 (98.10%), Query Frame = 1


Query: 60  VRVDVSARNPGKVQAALTENRRALSELVLEPLRDEEYYEIREPFSIMSVVKSPMGLMMGF 119
           VRVDVSARNPGKVQAALTENRR LSELVLEPLRDE+YYEIREPFSIMSVVKSPMGLM+GF
Sbjct: 96  VRVDVSARNPGKVQAALTENRRGLSELVLEPLRDEQYYEIREPFSIMSVVKSPMGLMVGF 155

Query: 120 MILVVFLMPKLMENIDPEEMRRAQEEMRNQGVPTLSSLLPGAGRS 165
           M++VVFLMPKL+EN+DPEEMRRAQEEMRNQGVP+L+SLLPG GR+
Sbjct: 156 MLVVVFLMPKLVENMDPEEMRRAQEEMRNQGVPSLASLLPGGGRN 200

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BLAST of CmaCh01G015180.1 vs. TAIR10
Match: AT2G25310.1 (AT2G25310.1 Protein of unknown function (DUF2012))

HSP 1 Score: 171.0 bits (432), Expect = 6.1e-43
Identity = 93/134 (69.40%), Postives = 110/134 (82.09%), Query Frame = 1


Query: 31  DGYTIYGRVKIAGNALKGYGLPGKISNIKVRVDVSARNPGKVQAALTENRRALSELVLEP 90
           DGY  +  V  AG  L      G   +  VRVDVSAR+ GKVQA LTE RR+L+ELVLEP
Sbjct: 78  DGYFTFHEVP-AGTHLIEVSAMGYFFS-PVRVDVSARHRGKVQATLTETRRSLTELVLEP 137

Query: 91  LRDEEYYEIREPFSIMSVVKSPMGLMMGFMILVVFLMPKLMENIDPEEMRRAQEEMRNQG 150
           L++E+YYEIREPF+IMS+VKSPMGLM+GFM++VVFLMPKLMENIDPEEM++AQEEMR QG
Sbjct: 138 LKEEQYYEIREPFNIMSIVKSPMGLMVGFMVVVVFLMPKLMENIDPEEMKQAQEEMRRQG 197

Query: 151 VPTLSSLLPGAGRS 165
           VP+L+SLLPGAG S
Sbjct: 198 VPSLTSLLPGAGAS 209

[Close]

BLAST of CmaCh01G015180.1 vs. TAIR10
Match: AT4G32130.1 (AT4G32130.1 Protein of unknown function (DUF2012))

HSP 1 Score: 166.4 bits (420), Expect = 1.5e-41
Identity = 87/131 (66.41%), Postives = 108/131 (82.44%), Query Frame = 1


Query: 31  DGYTIYGRVKIAGNALKGYGLPGKISNIKVRVDVSARNPGKVQAALTENRRALSELVLEP 90
           DGY  + +V    + ++ Y L    S   VRVDVSAR+ GKVQA LTE RR+L+ELVLEP
Sbjct: 73  DGYFTFHKVPAGTHLIEVYALGYFFS--PVRVDVSARHRGKVQATLTETRRSLTELVLEP 132

Query: 91  LRDEEYYEIREPFSIMSVVKSPMGLMMGFMILVVFLMPKLMENIDPEEMRRAQEEMRNQG 150
           LR E+YYE+REPFS+MS+VKSPMGLM+GFM++VVFLMPKLMENIDPEEM+ AQE+MR+QG
Sbjct: 133 LRAEQYYEMREPFSVMSIVKSPMGLMVGFMVVVVFLMPKLMENIDPEEMKSAQEQMRSQG 192

Query: 151 VPTLSSLLPGA 162
           VP+L+SLLP +
Sbjct: 193 VPSLTSLLPAS 201

[Close]

BLAST of CmaCh01G015180.1 vs. NCBI nr
Match: gi|567916738|ref|XP_006450375.1| (hypothetical protein CICLE_v10009464mg [Citrus clementina])

HSP 1 Score: 217.6 bits (553), Expect = 1.6e-53
Identity = 119/193 (61.66%), Postives = 148/193 (76.68%), Query Frame = 1


Query: 1   MRSQASVLLLLLQLFFSLLSPSHAISTGSGDGYTIYGRVKIAGNALKGYGLP-GKISNIK 60
           +RS++ + +  + LF SL+S + A+S+GSGDG++I GRVK+ G +LK +G P GK SN+K
Sbjct: 5   IRSKSVLSVFFINLFLSLVSSAVAVSSGSGDGFSISGRVKLPGMSLKAFGSPGGKASNVK 64

Query: 61  ----------------------------VRVDVSARNPGKVQAALTENRRALSELVLEPL 120
                                       VRVDVSAR+PGKVQAALTE RR L+ELVLEPL
Sbjct: 65  VVLNGGEHNMSAGTHLIEVAAIGYFFSPVRVDVSARHPGKVQAALTETRRGLNELVLEPL 124

Query: 121 RDEEYYEIREPFSIMSVVKSPMGLMMGFMILVVFLMPKLMENIDPEEMRRAQEEMRNQGV 165
           R+E+YYEIREPFSIMS+VKSPMGLMMGFM++VVFLMPKLMEN+DPEEMRRAQEEMR+QGV
Sbjct: 125 REEQYYEIREPFSIMSLVKSPMGLMMGFMLVVVFLMPKLMENMDPEEMRRAQEEMRSQGV 184

[Close]

BLAST of CmaCh01G015180.1 vs. NCBI nr
Match: gi|778686885|ref|XP_011652465.1| (PREDICTED: ER membrane protein complex subunit 7 homolog [Cucumis sativus])

HSP 1 Score: 214.2 bits (544), Expect = 1.8e-52
Identity = 130/206 (63.11%), Postives = 142/206 (68.93%), Query Frame = 1


Query: 1   MRSQASVLLLLLQLFFSLLSPSHAISTGSGDG---------------------------Y 60
           MRSQ   LLL LQLFFSLL+ SHAIS+GSGDG                            
Sbjct: 1   MRSQLFFLLLSLQLFFSLLTSSHAISSGSGDGYTIYGRVKIPSNTLKGFGLPGKTSNIKV 60

Query: 61  TIYGRVKIAGNALKGY----GLPGKISNIK----------VRVDVSARNPGKVQAALTEN 120
            + G  ++      GY     +P     I+          VRVDVSARNPGKVQAALTEN
Sbjct: 61  ILNGGQRVTFLRPDGYFSFHNVPAGTHLIEVAALGSFFSPVRVDVSARNPGKVQAALTEN 120

Query: 121 RRALSELVLEPLRDEEYYEIREPFSIMSVVKSPMGLMMGFMILVVFLMPKLMENIDPEEM 166
           RR LSELVLEPLRDEEYYE+REPF+IMSVVKSPMGLM+GFM++VVFLMPKLMENIDPEEM
Sbjct: 121 RRVLSELVLEPLRDEEYYEVREPFNIMSVVKSPMGLMVGFMVIVVFLMPKLMENIDPEEM 180

[Close]

BLAST of CmaCh01G015180.1 vs. NCBI nr
Match: gi|659132888|ref|XP_008466438.1| (PREDICTED: ER membrane protein complex subunit 7 homolog [Cucumis melo])

HSP 1 Score: 212.2 bits (539), Expect = 6.7e-52
Identity = 130/206 (63.11%), Postives = 141/206 (68.45%), Query Frame = 1


Query: 1   MRSQASVLLLLLQLFFSLLSPSHAISTGSGDG---------------------YTIYGRV 60
           MRSQ   LLL LQLFFSLL+ SHAIS+GSGDG                      T   +V
Sbjct: 1   MRSQVFFLLLSLQLFFSLLTSSHAISSGSGDGYTIYGRVKIPSNTLKGFGLPGKTSNIKV 60

Query: 61  KIAGNA----------LKGYGLPGKISNIK----------VRVDVSARNPGKVQAALTEN 120
            + G               Y +P     I+          VRVDVSARNPGKVQAA TEN
Sbjct: 61  ILNGGQRVTFLRPDGYFSFYNVPAGTHLIEVAALGYFFSPVRVDVSARNPGKVQAAQTEN 120

Query: 121 RRALSELVLEPLRDEEYYEIREPFSIMSVVKSPMGLMMGFMILVVFLMPKLMENIDPEEM 166
           RR LSELVLEPLRDEEYYE+REPF+IMSVVKSPMGLM+GFM++VVFLMPKLMENIDPEEM
Sbjct: 121 RRVLSELVLEPLRDEEYYEVREPFNIMSVVKSPMGLMVGFMVIVVFLMPKLMENIDPEEM 180

[Close]

BLAST of CmaCh01G015180.1 vs. NCBI nr
Match: gi|694330120|ref|XP_009355776.1| (PREDICTED: ER membrane protein complex subunit 7 homolog [Pyrus x bretschneideri])

HSP 1 Score: 198.4 bits (503), Expect = 1.0e-47
Identity = 120/205 (58.54%), Postives = 139/205 (67.80%), Query Frame = 1


Query: 2   RSQASVLLLLLQLFFSLLSPSHAISTGSGDGYTIYGRVK--------------------- 61
           RS   VL+L LQL FSL+S S AIS GS DGYTI+GRVK                     
Sbjct: 6   RSNLVVLVLFLQLCFSLISSSLAISPGSADGYTIHGRVKIPPSLGVKGFAPYGKISNIKV 65

Query: 62  -IAGNALKGYGLPG---------------KISNI-----KVRVDVSARNPGKVQAALTEN 121
            + G     +  P                ++S I      VRVDVSARNPGKVQAALTEN
Sbjct: 66  ILNGGQSVTFLRPDGFFSFHNVPAGTHLIEVSAIGYFFSPVRVDVSARNPGKVQAALTEN 125

Query: 122 RRALSELVLEPLRDEEYYEIREPFSIMSVVKSPMGLMMGFMILVVFLMPKLMENIDPEEM 165
           RR L+E VLEPLR+E+YYEIREPFSIM++VKSPMGLM+GFM++VVFLMPKL+EN+DPEEM
Sbjct: 126 RRPLNEFVLEPLREEQYYEIREPFSIMALVKSPMGLMVGFMLIVVFLMPKLVENMDPEEM 185

[Close]

BLAST of CmaCh01G015180.1 vs. NCBI nr
Match: gi|658050734|ref|XP_008361081.1| (PREDICTED: ER membrane protein complex subunit 7 homolog [Malus domestica])

HSP 1 Score: 197.2 bits (500), Expect = 2.2e-47
Identity = 120/206 (58.25%), Postives = 135/206 (65.53%), Query Frame = 1


Query: 2   RSQASVLLLLLQLFFSLLSPSHAISTGSGDGYTIYGRVKI-------------------- 61
           RS   VL+L LQL FSL+S S AIS  S DGYTI+GRVKI                    
Sbjct: 6   RSNPVVLVLFLQLCFSLISSSLAISPDSADGYTIHGRVKIPPSLGVKGFAPYGKISNIKV 65

Query: 62  -----------------------AGNALKGYGLPGKISNIKVRVDVSARNPGKVQAALTE 121
                                  AG  L      G   +  VRVDVSARNPGKVQAALTE
Sbjct: 66  ILNGGQNVTFLRPDGFFSFHNVPAGTHLIEVSAIGYFFS-PVRVDVSARNPGKVQAALTE 125

Query: 122 NRRALSELVLEPLRDEEYYEIREPFSIMSVVKSPMGLMMGFMILVVFLMPKLMENIDPEE 165
           NRR L+E VLEPLR+E+YYEIREPFSIM +VKSPMGLM+GFM++VVFLMPKL+EN+DPEE
Sbjct: 126 NRRPLNEFVLEPLREEQYYEIREPFSIMXLVKSPMGLMVGFMLIVVFLMPKLVENMDPEE 185

The following BLAST results are available for this feature:

BLAST of CmaCh01G015180.1 vs. Swiss-Prot


Match Name	E-value	Identity	Description
Y4213_ARATH	2.6e-40	66.41	ER membrane protein complex subunit 7 homolog OS=Arabidopsis thaliana GN=At4g321...	[more]

BLAST of CmaCh01G015180.1 vs. TrEMBL


Match Name	E-value	Identity	Description
V4UHB4_9ROSI	1.1e-53	61.66	Uncharacterized protein OS=Citrus clementina GN=CICLE_v10009464mg PE=4 SV=1	[more]
A0A0A0LH88_CUCSA	1.2e-52	63.11	Uncharacterized protein OS=Cucumis sativus GN=Csa_3G876010 PE=4 SV=1	[more]
M5XM77_PRUPE	8.6e-46	56.86	Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa011475mg PE=4 SV=1	[more]
A0A0D2PHW0_GOSRA	2.8e-44	89.52	Uncharacterized protein OS=Gossypium raimondii GN=B456_001G035100 PE=4 SV=1	[more]
A0A0B0MQY2_GOSAR	2.8e-44	89.52	Uncharacterized protein OS=Gossypium arboreum GN=F383_29399 PE=4 SV=1	[more]

BLAST of CmaCh01G015180.1 vs. TAIR10


Match Name	E-value	Identity	Description
AT2G25310.1	6.1e-43	69.40	Protein of unknown function (DUF2012)	[more]
AT4G32130.1	1.5e-41	66.41	Protein of unknown function (DUF2012)	[more]

BLAST of CmaCh01G015180.1 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|567916738\|ref\|XP_006450375.1\|	1.6e-53	61.66	hypothetical protein CICLE_v10009464mg [Citrus clementina]	[more]
gi\|778686885\|ref\|XP_011652465.1\|	1.8e-52	63.11	PREDICTED: ER membrane protein complex subunit 7 homolog [Cucumis sativus]	[more]
gi\|659132888\|ref\|XP_008466438.1\|	6.7e-52	63.11	PREDICTED: ER membrane protein complex subunit 7 homolog [Cucumis melo]	[more]
gi\|694330120\|ref\|XP_009355776.1\|	1.0e-47	58.54	PREDICTED: ER membrane protein complex subunit 7 homolog [Pyrus x bretschneideri...	[more]
gi\|658050734\|ref\|XP_008361081.1\|	2.2e-47	58.25	PREDICTED: ER membrane protein complex subunit 7 homolog [Malus domestica]	[more]

Annotated Terms

The following terms have been associated with this mRNA:

Vocabulary: **INTERPRO**
Term	Definition

GO Annotation

GO Assignments

This mRNA is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
CmaCh01G015180	CmaCh01G015180	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
CmaCh01G015180.1	CmaCh01G015180.1-protein	polypeptide

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
CmaCh01G015180.1.exon.1	CmaCh01G015180.1.exon.1	exon
CmaCh01G015180.1.exon.2	CmaCh01G015180.1.exon.2	exon
CmaCh01G015180.1.exon.3	CmaCh01G015180.1.exon.3	exon
CmaCh01G015180.1.exon.4	CmaCh01G015180.1.exon.4	exon
CmaCh01G015180.1.exon.5	CmaCh01G015180.1.exon.5	exon
CmaCh01G015180.1.exon.6	CmaCh01G015180.1.exon.6	exon

The following five_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
CmaCh01G015180.1.five_prime_UTR.1	CmaCh01G015180.1.five_prime_UTR.1	five_prime_UTR

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
CmaCh01G015180.1.CDS.1	CmaCh01G015180.1.CDS.1	CDS
CmaCh01G015180.1.CDS.2	CmaCh01G015180.1.CDS.2	CDS
CmaCh01G015180.1.CDS.3	CmaCh01G015180.1.CDS.3	CDS
CmaCh01G015180.1.CDS.4	CmaCh01G015180.1.CDS.4	CDS
CmaCh01G015180.1.CDS.5	CmaCh01G015180.1.CDS.5	CDS
CmaCh01G015180.1.CDS.6	CmaCh01G015180.1.CDS.6	CDS

The following three_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
CmaCh01G015180.1.three_prime_UTR.1	CmaCh01G015180.1.three_prime_UTR.1	three_prime_UTR

InterPro

Analysis Name: InterPro Annotations of Cucurbita maxima
Date Performed: 2017-05-20


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR13605	UNCHARACTERIZED	coord: 60..165 score: 6.2
None	No IPR available	PANTHER	PTHR13605:SF4	ER MEMBRANE PROTEIN COMPLEX SUBUNIT 7	coord: 60..165 score: 6.2