CmaCh00G001930.1 (mRNA) Cucurbita maxima (Rimu) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CmaCh00G001930.1
Type	mRNA
Organism	Cucurbita maxima (Cucurbita maxima (Rimu))
Description	DUF247 domain protein
Location	Cma_Chr00 : 12892975 .. 12893458 (-)
Sequence length	447

Genome Viewer

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSexon

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGAACGACGAGGATTTTGTTAGAATGTTGTTGGTAGATGGTTGTTTTATAGCGGAGTTGTTTATATTAAATTATGAACAATACTACCCACGTTCATTCATTCAAATTGAGCAGAAGGTAGATCTTCAATTCATCCGAAGATTTCCTCATATAGGCACTGGTTAAGTTGAAAAATAAAATTCCTTTTTTTATTCTGGAAAGACTATTCGACTTTATAAAACAAAAGGATCCCTCCGTCCCCTTTATAAGACTTACAACGGTATTTTTTCATCATGGGATTGTGAATAATTACTATCTTTCTAATATCCCAAGCCCAAACCATTTCATCGATGTTTTAAGCTTCTTCTTCGTCCTCACGATATCTTCTAAGGACAATAGTAAAGAAGAAAAATCAATTATTCCTCCATCGATAACTGAGCTCCAAGAAGCCAGTGTCACCATCAAGAAAGCAGAAAATGCCAAATGTGTGAAACATAAGGTTTGA

mRNA sequence

ATGAACGACGAGGATTTTGTTAGAATGTTGTTGGTAGATGGTTGTTTTATAGCGGAGTTGTTTATATTAAATTATGAACAATACTACCCACGTTCATTCATTCAAATTGAGCAGAAGGCACTGGTTAAGTTGAAAAATAAAATTCCTTTTTTTATTCTGGAAAGACTATTCGACTTTATAAAACAAAAGGATCCCTCCGTCCCCTTTATAAGACTTACAACGGTATTTTTTCATCATGGGATTGTGAATAATTACTATCTTTCTAATATCCCAAGCCCAAACCATTTCATCGATGTTTTAAGCTTCTTCTTCGTCCTCACGATATCTTCTAAGGACAATAGTAAAGAAGAAAAATCAATTATTCCTCCATCGATAACTGAGCTCCAAGAAGCCAGTGTCACCATCAAGAAAGCAGAAAATGCCAAATGTGTGAAACATAAGGTTTGA

Coding sequence (CDS)

ATGAACGACGAGGATTTTGTTAGAATGTTGTTGGTAGATGGTTGTTTTATAGCGGAGTTGTTTATATTAAATTATGAACAATACTACCCACGTTCATTCATTCAAATTGAGCAGAAGGCACTGGTTAAGTTGAAAAATAAAATTCCTTTTTTTATTCTGGAAAGACTATTCGACTTTATAAAACAAAAGGATCCCTCCGTCCCCTTTATAAGACTTACAACGGTATTTTTTCATCATGGGATTGTGAATAATTACTATCTTTCTAATATCCCAAGCCCAAACCATTTCATCGATGTTTTAAGCTTCTTCTTCGTCCTCACGATATCTTCTAAGGACAATAGTAAAGAAGAAAAATCAATTATTCCTCCATCGATAACTGAGCTCCAAGAAGCCAGTGTCACCATCAAGAAAGCAGAAAATGCCAAATGTGTGAAACATAAGGTTTGA

Protein sequence

MNDEDFVRMLLVDGCFIAELFILNYEQYYPRSFIQIEQKALVKLKNKIPFFILERLFDFIKQKDPSVPFIRLTTVFFHHGIVNNYYLSNIPSPNHFIDVLSFFFVLTISSKDNSKEEKSIIPPSITELQEASVTIKKAENAKCVKHKV

Homology

[Close]

BLAST of CmaCh00G001930.1 vs. TrEMBL
Match: A0A0A0LLX1_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_2G380590 PE=4 SV=1)

HSP 1 Score: 122.1 bits (305), Expect = 5.7e-25
Identity = 80/170 (47.06%), Postives = 100/170 (58.82%), Query Frame = 1


Query: 1   MNDEDFVRMLLVDGCFIAELFILNYEQYY---PRSFIQIEQKA---------------LV 60
           MNDEDF++M+L+DGCFI E FIL+YE+Y       F +IE                  L+
Sbjct: 146 MNDEDFIKMMLMDGCFIVEFFILDYEEYKMPDESFFPKIENNVSMSFYKERIPDIDDDLI 205

Query: 61  KLKNKIPFFILERLFDFI-KQKDPSVPFIRLTTVFFHHGIVNNYYLSNIPS--PNHFIDV 120
           KL+N++PFFIL+ L+D I KQ D    F  LT  +   G + NY  S+I S  P HFID 
Sbjct: 206 KLENQLPFFILQHLYDLIPKQDDNPKCFKELTCKYLKMGWLENYEPSDIQSIEPKHFIDF 265

Query: 121 LSFFFVLTISSKDNSK-----EEKSIIPPSITELQEASVTIKKAENAKCV 145
           LSF+FV     + + K     E   IIPPSITEL EA VTIKKAEN KC+
Sbjct: 266 LSFYFVPHHRCEHDKKSSDLEEWNVIIPPSITELFEAGVTIKKAENTKCL 315

[Close]

BLAST of CmaCh00G001930.1 vs. TrEMBL
Match: A0A0A0LM96_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_2G380080 PE=4 SV=1)

HSP 1 Score: 95.5 bits (236), Expect = 5.7e-17
Identity = 67/152 (44.08%), Postives = 84/152 (55.26%), Query Frame = 1


Query: 1   MNDEDFVRMLLVDGCFIAELFILNYEQYYPRSFIQIEQKALVKLKNKIPFFILERLFDFI 60
           MNDEDF++M+LVD                    I      L+KL+N++PFF+L+ LFD I
Sbjct: 153 MNDEDFIKMMLVD------------------ERIPDIDDDLIKLENQLPFFVLQHLFDLI 212

Query: 61  -KQKDPSVPFIRLTTVFFHHGIVNNYYLSNIPS--PNHFIDVLSFFFVLTI-----SSKD 120
            K  D    F +LT  + + G + NY  S+I S  P HFID LSF+FV            
Sbjct: 213 PKHNDNPNCFKQLTYKYLNMGWLENYEPSDILSIKPKHFIDFLSFYFVPHHRCEHDQESS 272

Query: 121 NSKEEKSIIPPSITELQEASVTIKKAENAKCV 145
           + KE   IIPPSITEL EA VTIKKAEN KC+
Sbjct: 273 DMKEWNVIIPPSITELCEAGVTIKKAENTKCL 286

[Close]

BLAST of CmaCh00G001930.1 vs. TrEMBL
Match: A0A0A0LQ57_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_2G380610 PE=4 SV=1)

HSP 1 Score: 80.1 bits (196), Expect = 2.5e-12
Identity = 60/175 (34.29%), Postives = 88/175 (50.29%), Query Frame = 1


Query: 1   MNDEDFVRMLLVDGCFIAELFILNY--------------EQYYPRSFIQIEQKALVKLKN 60
           M DE+F+ M+LVD CFI E F+L Y                +Y   F +I    L+KL+N
Sbjct: 136 MKDEEFIIMMLVDACFIVEFFLLYYGSFHEDGKLFNAELSLFYYGVFYEI-LLDLIKLEN 195

Query: 61  KIPFFILERLFDFIKQ------------KDPSVPFIRLT-TVFFHHGIVNNYYLSNI--P 120
           ++PFF+L+ LFD + +            KD  +  I LT  V    G V  Y ++N+   
Sbjct: 196 QVPFFLLQNLFDLMPKDKVDISSIIGGYKDSPISLIDLTYMVLKEFGFVREYKINNLYHK 255

Query: 121 SPNHFIDVLSFFFVLTISSKDNSK-------EEKSIIPPSITELQEASVTIKKAE 140
           +P H +D LSF+F+    +  N K       ++  + PP+ TEL EA VTIK A+
Sbjct: 256 NPKHLLDFLSFYFLPVPPNNWNRKFDHVKISKQWRLSPPTTTELCEAGVTIKVAK 309

[Close]

BLAST of CmaCh00G001930.1 vs. TrEMBL
Match: A5BYY1_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_031449 PE=4 SV=1)

HSP 1 Score: 77.8 bits (190), Expect = 1.2e-11
Identity = 52/148 (35.14%), Postives = 83/148 (56.08%), Query Frame = 1


Query: 2   NDEDFVRMLLVDGCFIAELFILNY--------EQYYPRSFIQIE-QKALVKLKNKIPFFI 61
           + ++FV M+L+DGCFI ELF+ N         +  + R+ +  +  + L+ L+N++PFF+
Sbjct: 124 DSDEFVTMMLLDGCFIIELFLKNKNKQLRDEDDPIFNRTMVLTDLHRDLILLENQLPFFV 183

Query: 62  LERLFDFIK---QKDPSVPFIRLTTVFFHH-GIVNNYYLSNIPSPNHFIDVLSFFFVLTI 121
           LE LF+ I+   Q+ PS   + LT VFF   G+       + P   H +D+L  +FV   
Sbjct: 184 LETLFNLIENTDQEGPSTSVLELTYVFFKFLGLQEVLIRDSQPDVKHLLDLLRLWFVPPS 243

Query: 122 SSKDNSKEEKSIIPPSITELQEASVTIK 137
           S+K  SK +  +I  S+TEL EA V  +
Sbjct: 244 STKSTSKSKFELI-RSVTELHEAGVKFR 270

[Close]

BLAST of CmaCh00G001930.1 vs. TrEMBL
Match: A0A0A0LSF4_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_2G380060 PE=4 SV=1)

HSP 1 Score: 74.7 bits (182), Expect = 1.0e-10
Identity = 55/196 (28.06%), Postives = 88/196 (44.90%), Query Frame = 1


Query: 1   MNDEDFVRMLLVDGCFIAELFILNYEQYYPRS--FIQIEQKA----------------LV 60
           M+D +FV M+L+D CFI E FI  Y+  + +   F  I  K                 L+
Sbjct: 156 MDDHNFVIMMLMDACFIVEFFIQMYDDQFDQDDQFPLISDKVNILSLFPEITDFIMFDLI 215

Query: 61  KLKNKIPFFILERLFDFIKQKDPSVPFIRLTTVFFHHGIVNNYYLSNI------PSPNHF 120
           KL+N++PFF+L+ +FD I + +  V FI LT      G + NY + +           H 
Sbjct: 216 KLENQVPFFLLQHVFDMIPRHNLHVSFIDLTYCALRIGFIFNYKIYSFDYDFVKKDLKHL 275

Query: 121 IDVLSFFFVLTISSKD------------------------------NSKEEKSIIPPSIT 143
           +  LS +F+   ++ D                               + +++ + PPSIT
Sbjct: 276 VHFLSLYFIPPPTTNDMIQNKKKNNYSFLSFFSRLLCCELCQNPDKENSDQEFLSPPSIT 335

[Close]

BLAST of CmaCh00G001930.1 vs. TAIR10
Match: AT4G31980.1 (AT4G31980.1 unknown protein)

HSP 1 Score: 55.8 bits (133), Expect = 2.5e-08
Identity = 46/166 (27.71%), Postives = 78/166 (46.99%), Query Frame = 1


Query: 1   MNDEDFVRMLLVDGCFIAELFILNYEQYYPR------------SFIQIEQKALVKLKNKI 60
           ++ ++FV ML+VDG F+ EL +     +YPR              I    + ++ ++N++
Sbjct: 373 LHSDEFVEMLVVDGSFLVELLL---RSHYPRLRGENDRIFGNSMMITDVCRDMILIENQL 432

Query: 61  PFFILERLF----DFIKQKDPSVPFIRLTTVFFHHGIVNNYYLSN------IPSPNHFID 120
           PFF+++ +F    ++ +Q  PS+  I+L    F      +Y+LS       I  P HF+D
Sbjct: 433 PFFVVKEIFLLLLNYYQQGTPSI--IQLAQRHF------SYFLSRIDDEKFITEPEHFVD 492

Query: 121 VLSFFFVLTISSKDNSKEEKSIIPPSITELQEASVTIKKAENAKCV 145
           +L   ++     K      K    P  TEL  A V  K AE + C+
Sbjct: 493 LLRSCYLPQFPIKLEYTTVKVDNAPEATELHTAGVRFKPAETSSCL 527

[Close]

BLAST of CmaCh00G001930.1 vs. NCBI nr
Match: gi|778674379|ref|XP_011650197.1| (PREDICTED: UPF0481 protein At3g47200-like [Cucumis sativus])

HSP 1 Score: 122.1 bits (305), Expect = 8.2e-25
Identity = 80/170 (47.06%), Postives = 100/170 (58.82%), Query Frame = 1


Query: 1   MNDEDFVRMLLVDGCFIAELFILNYEQYY---PRSFIQIEQKA---------------LV 60
           MNDEDF++M+L+DGCFI E FIL+YE+Y       F +IE                  L+
Sbjct: 146 MNDEDFIKMMLMDGCFIVEFFILDYEEYKMPDESFFPKIENNVSMSFYKERIPDIDDDLI 205

Query: 61  KLKNKIPFFILERLFDFI-KQKDPSVPFIRLTTVFFHHGIVNNYYLSNIPS--PNHFIDV 120
           KL+N++PFFIL+ L+D I KQ D    F  LT  +   G + NY  S+I S  P HFID 
Sbjct: 206 KLENQLPFFILQHLYDLIPKQDDNPKCFKELTCKYLKMGWLENYEPSDIQSIEPKHFIDF 265

Query: 121 LSFFFVLTISSKDNSK-----EEKSIIPPSITELQEASVTIKKAENAKCV 145
           LSF+FV     + + K     E   IIPPSITEL EA VTIKKAEN KC+
Sbjct: 266 LSFYFVPHHRCEHDKKSSDLEEWNVIIPPSITELFEAGVTIKKAENTKCL 315

[Close]

BLAST of CmaCh00G001930.1 vs. NCBI nr
Match: gi|659088838|ref|XP_008445188.1| (PREDICTED: UPF0481 protein At3g47200-like [Cucumis melo])

HSP 1 Score: 119.0 bits (297), Expect = 7.0e-24
Identity = 80/171 (46.78%), Postives = 102/171 (59.65%), Query Frame = 1


Query: 1   MNDEDFVRMLLVDGCFIAELFILNYEQY---YPRSFIQIEQKA---------------LV 60
           MNDEDF++M+LVDGCFI E FIL++E+Y   +   F QIE                  L+
Sbjct: 152 MNDEDFIKMMLVDGCFIVEFFILDFEEYNESHESLFPQIENNVSMSFYKERIPDIDEDLI 211

Query: 61  KLKNKIPFFILERLFDFI-KQKDPSVPFIRLTTVFFHHGIVNNYYLSNIPS--PNHFIDV 120
           KL+N++PFF+L+ LFD I K KD    F +LT  +   G + NY  S+I S  P HFID 
Sbjct: 212 KLENQLPFFVLQHLFDLIPKHKDAPNCFKQLTYEYLTMGWLENYEPSDILSIKPKHFIDF 271

Query: 121 LSFFFV----LTISSKDNSKEE-KSIIPPSITELQEASVTIKKAE-NAKCV 145
           LSF+ V         K N +EE   IIPPSITE+ EA VTIKKA+ N KC+
Sbjct: 272 LSFYLVPEHQYEHDQKSNDEEEWNIIIPPSITEICEAGVTIKKADKNTKCL 322

[Close]

BLAST of CmaCh00G001930.1 vs. NCBI nr
Match: gi|659088836|ref|XP_008445187.1| (PREDICTED: UPF0481 protein At3g47200-like [Cucumis melo])

HSP 1 Score: 99.0 bits (245), Expect = 7.4e-18
Identity = 67/165 (40.61%), Postives = 93/165 (56.36%), Query Frame = 1


Query: 6   FVRMLLVDGCFIAELFILNYEQYYPRS-FIQIEQKA---------------LVKLKNKIP 65
           FV M+LVD CFI E  IL ++  +P   F+QI+                  L+KL+N++P
Sbjct: 137 FVIMMLVDACFIVEFLILKFDYDHPNGKFLQIQDNIDISFYQGMDLHILYDLIKLENQVP 196

Query: 66  FFILERLFDFIKQKDPSV---PFIRLTTVFFHHGIVNNYYLSNIPSPNHFIDVLSFFFVL 125
           FF+L+ LFD I + D S+    F  LT       +V  Y ++    P HF+D+L+F+FV 
Sbjct: 197 FFLLQYLFDLIPKHDISMMISSFRDLTLRALKFRLVRTYEINLFKEPKHFVDLLTFYFVP 256

Query: 126 TISSKDNSK--------EEKSI-IPPSITELQEASVTIKKAENAK 143
           +   K N++        EEK+  IPPSITEL+EA VTIKKAE AK
Sbjct: 257 SAGQKVNNQHGIFKSTIEEKNRWIPPSITELREAGVTIKKAEKAK 301

[Close]

BLAST of CmaCh00G001930.1 vs. NCBI nr
Match: gi|700207809|gb|KGN62928.1| (hypothetical protein Csa_2G380080 [Cucumis sativus])

HSP 1 Score: 95.5 bits (236), Expect = 8.2e-17
Identity = 67/152 (44.08%), Postives = 84/152 (55.26%), Query Frame = 1


Query: 1   MNDEDFVRMLLVDGCFIAELFILNYEQYYPRSFIQIEQKALVKLKNKIPFFILERLFDFI 60
           MNDEDF++M+LVD                    I      L+KL+N++PFF+L+ LFD I
Sbjct: 153 MNDEDFIKMMLVD------------------ERIPDIDDDLIKLENQLPFFVLQHLFDLI 212

Query: 61  -KQKDPSVPFIRLTTVFFHHGIVNNYYLSNIPS--PNHFIDVLSFFFVLTI-----SSKD 120
            K  D    F +LT  + + G + NY  S+I S  P HFID LSF+FV            
Sbjct: 213 PKHNDNPNCFKQLTYKYLNMGWLENYEPSDILSIKPKHFIDFLSFYFVPHHRCEHDQESS 272

Query: 121 NSKEEKSIIPPSITELQEASVTIKKAENAKCV 145
           + KE   IIPPSITEL EA VTIKKAEN KC+
Sbjct: 273 DMKEWNVIIPPSITELCEAGVTIKKAENTKCL 286

[Close]

BLAST of CmaCh00G001930.1 vs. NCBI nr
Match: gi|659089573|ref|XP_008445583.1| (PREDICTED: LOW QUALITY PROTEIN: UPF0481 protein At3g47200-like [Cucumis melo])

HSP 1 Score: 87.4 bits (215), Expect = 2.2e-14
Identity = 62/203 (30.54%), Postives = 94/203 (46.31%), Query Frame = 1


Query: 1   MNDEDFVRMLLVDGCFIAELFILNYEQYYP--RSFIQIEQKA----------------LV 60
           M+D +FV M+L+D CFI E FI  Y+  YP  R F +I+                   L+
Sbjct: 207 MDDHNFVIMMLLDACFIVESFIQQYDASYPHDRKFPRIQDNVDFLLLYPETSQDISNDLI 266

Query: 61  KLKNKIPFFILERLFDFIKQKDPSVPFIRLTTVFFHHGIVNNYYLSNI----PSPNHFID 120
           KL+N++PFF+L+ +F  I Q  P V FI LT    +   ++ Y + ++      P H + 
Sbjct: 267 KLENQVPFFLLQHMFHMIPQHSPPVSFINLTYSALYDWFISTYKICSVGIVPNEPKHLVH 326

Query: 121 VLSFFFVLT------------ISSKDNSKEE---------------------------KS 143
            LSF+F+ +            I + +N K+                            ++
Sbjct: 327 FLSFYFIPSHTTDDMIQNKQEIKNSENKKKNNYNFLSFFSTLFCCQLWQNPDNKKKMIRN 386

The following BLAST results are available for this feature:

BLAST of CmaCh00G001930.1 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of CmaCh00G001930.1 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0LLX1_CUCSA	5.7e-25	47.06	Uncharacterized protein OS=Cucumis sativus GN=Csa_2G380590 PE=4 SV=1	[more]
A0A0A0LM96_CUCSA	5.7e-17	44.08	Uncharacterized protein OS=Cucumis sativus GN=Csa_2G380080 PE=4 SV=1	[more]
A0A0A0LQ57_CUCSA	2.5e-12	34.29	Uncharacterized protein OS=Cucumis sativus GN=Csa_2G380610 PE=4 SV=1	[more]
A5BYY1_VITVI	1.2e-11	35.14	Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_031449 PE=4 SV=1	[more]
A0A0A0LSF4_CUCSA	1.0e-10	28.06	Uncharacterized protein OS=Cucumis sativus GN=Csa_2G380060 PE=4 SV=1	[more]

BLAST of CmaCh00G001930.1 vs. TAIR10


Match Name	E-value	Identity	Description
AT4G31980.1	2.5e-08	27.71	unknown protein	[more]

BLAST of CmaCh00G001930.1 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|778674379\|ref\|XP_011650197.1\|	8.2e-25	47.06	PREDICTED: UPF0481 protein At3g47200-like [Cucumis sativus]	[more]
gi\|659088838\|ref\|XP_008445188.1\|	7.0e-24	46.78	PREDICTED: UPF0481 protein At3g47200-like [Cucumis melo]	[more]
gi\|659088836\|ref\|XP_008445187.1\|	7.4e-18	40.61	PREDICTED: UPF0481 protein At3g47200-like [Cucumis melo]	[more]
gi\|700207809\|gb\|KGN62928.1\|	8.2e-17	44.08	hypothetical protein Csa_2G380080 [Cucumis sativus]	[more]
gi\|659089573\|ref\|XP_008445583.1\|	2.2e-14	30.54	PREDICTED: LOW QUALITY PROTEIN: UPF0481 protein At3g47200-like [Cucumis melo]	[more]

Annotated Terms

The following terms have been associated with this mRNA:

Vocabulary: **INTERPRO**
Term	Definition
IPR004158	DUF247_pln

GO Annotation

GO Assignments

This mRNA is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
CmaCh00G001930	CmaCh00G001930	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
CmaCh00G001930.1	CmaCh00G001930.1-protein	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
CmaCh00G001930.1.CDS.2	CmaCh00G001930.1.CDS.2	CDS
CmaCh00G001930.1.CDS.1	CmaCh00G001930.1.CDS.1	CDS

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
CmaCh00G001930.1.exon.2	CmaCh00G001930.1.exon.2	exon
CmaCh00G001930.1.exon.1	CmaCh00G001930.1.exon.1	exon

InterPro

Analysis Name: InterPro Annotations of Cucurbita maxima
Date Performed: 2017-05-20


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR004158	Protein of unknown function DUF247, plant	PFAM	PF03140	DUF247	coord: 4..143 score: 2.6
None	No IPR available	PANTHER	PTHR31549	FAMILY NOT NAMED	coord: 1..144 score: 1.0
None	No IPR available	PANTHER	PTHR31549:SF2	SUBFAMILY NOT NAMED	coord: 1..144 score: 1.0