CmaCh00G001700.1 (mRNA) Cucurbita maxima (Rimu)

Overview
NameCmaCh00G001700.1
TypemRNA
OrganismCucurbita maxima (Cucurbita maxima (Rimu))
DescriptionUnknown protein
LocationCma_Chr00 : 10535349 .. 10535737 (-)
Sequence length294
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSexon
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGGACGGCAATGGTCCGCCGACAAGCTCGTTCTGATCTTGGATGCAGTACATTGGAATCCTGAAGCACCACCACGAAAGCTACCGCGCGTTCACCTTCGGTGCGGTAAGGCACCACCCAGTTGTGCCAGCAGCCAACTCCGGCGTGTCAGCTTAGTTATCCTCATCAAGCCACTTACTTAATGTCTAGCTTCCCAACAGGTAGACGGTTTCTTTTCCCCCAGATCAATGAAGAAGGGAGAAGTGTATTCTTCCGAATCCCCGAAAGCAAAGCGCTATGCCGGGGCGGGGGCACGGGACAAGAAACGGCTCCGAAGAAAGCTGTTTTGGTTCCCAATGTTTCTCCACGCCCAACGAGATGCGTCAACCTCGGGATGCTTTACTCCTAA

mRNA sequence

ATGGGACGGCAATGGTCCGCCGACAAGCTCGTTCTGATCTTGGATGCAGTACATTGGAATCCTGAAGCACCACCACGAAAGCTACCGCGCGTTCACCTTCGGTGCGGTAGACGGTTTCTTTTCCCCCAGATCAATGAAGAAGGGAGAAGTGTATTCTTCCGAATCCCCGAAAGCAAAGCGCTATGCCGGGGCGGGGGCACGGGACAAGAAACGGCTCCGAAGAAAGCTGTTTTGGTTCCCAATGTTTCTCCACGCCCAACGAGATGCGTCAACCTCGGGATGCTTTACTCCTAA

Coding sequence (CDS)

ATGGGACGGCAATGGTCCGCCGACAAGCTCGTTCTGATCTTGGATGCAGTACATTGGAATCCTGAAGCACCACCACGAAAGCTACCGCGCGTTCACCTTCGGTGCGGTAGACGGTTTCTTTTCCCCCAGATCAATGAAGAAGGGAGAAGTGTATTCTTCCGAATCCCCGAAAGCAAAGCGCTATGCCGGGGCGGGGGCACGGGACAAGAAACGGCTCCGAAGAAAGCTGTTTTGGTTCCCAATGTTTCTCCACGCCCAACGAGATGCGTCAACCTCGGGATGCTTTACTCCTAA

Protein sequence

MGRQWSADKLVLILDAVHWNPEAPPRKLPRVHLRCGRRFLFPQINEEGRSVFFRIPESKALCRGGGTGQETAPKKAVLVPNVSPRPTRCVNLGMLYS
Homology
[Close]
BLAST of CmaCh00G001700.1 vs. TrEMBL
Match: B9TA70_RICCO (Putative uncharacterized protein OS=Ricinus communis GN=RCOM_2058800 PE=4 SV=1)

HSP 1 Score: 137.5 bits (345), Expect = 8.6e-30
Identity = 69/97 (71.13%), Postives = 74/97 (76.29%), Query Frame = 1 

Query: 1  MGRQWSADKLVLILDAVHWNPEAPPRKLPRVHLRCGRRFLFPQINEEGRSVFFRIPESKA 60
          MGRQWS  KLVLILDAVHWNPEAPPR LPRV LR  ++       EE  S FFR   S+A
Sbjct: 1  MGRQWSTGKLVLILDAVHWNPEAPPRTLPRVRLRSMKK------GEE--SGFFRKTGSEA 60

Query: 61 LCRGGGTGQETAPKKAVLVPNVSPRPTRCVNLGMLYS 98
          LCRGGGTG+ETAPKK + VPN SPRPTRC NLGMLYS
Sbjct: 61 LCRGGGTGKETAPKKEIGVPNASPRPTRCANLGMLYS 89

[Close]
BLAST of CmaCh00G001700.1 vs. TrEMBL
Match: B9SKR3_RICCO (Putative uncharacterized protein OS=Ricinus communis GN=RCOM_1604210 PE=4 SV=1)

HSP 1 Score: 80.1 bits (196), Expect = 1.6e-12
Identity = 37/48 (77.08%), Postives = 40/48 (83.33%), Query Frame = 1 

Query: 50 SVFFRIPESKALCRGGGTGQETAPKKAVLVPNVSPRPTRCVNLGMLYS 98
          S FFR   S+ALCRGGGTG+ETAPKK + VPN SPRPTRC NLGMLYS
Sbjct: 7  SGFFRKTGSEALCRGGGTGKETAPKKEIGVPNASPRPTRCANLGMLYS 54

[Close]
BLAST of CmaCh00G001700.1 vs. TrEMBL
Match: A0A096U8H9_MAIZE (Uncharacterized protein OS=Zea mays PE=4 SV=1)

HSP 1 Score: 77.4 bits (189), Expect = 1.1e-11
Identity = 33/37 (89.19%), Postives = 34/37 (91.89%), Query Frame = 1 

Query: 1  MGRQWSADKLVLILDAVHWNPEAPPRKLPRVHLRCGR 38
          MGRQWSA KLVLILDAVHWNPEAPPR LPRV LRCG+
Sbjct: 1  MGRQWSAGKLVLILDAVHWNPEAPPRTLPRVRLRCGK 37

[Close]
BLAST of CmaCh00G001700.1 vs. TrEMBL
Match: A0A087G1B0_ARAAL (Uncharacterized protein OS=Arabis alpina GN=AALP_AAs70636U000900 PE=4 SV=1)

HSP 1 Score: 75.9 bits (185), Expect = 3.1e-11
Identity = 32/37 (86.49%), Postives = 33/37 (89.19%), Query Frame = 1 

Query: 1  MGRQWSADKLVLILDAVHWNPEAPPRKLPRVHLRCGR 38
          MGRQWSA KLVLI DAVHWNPEAPPR LPRV LRCG+
Sbjct: 1  MGRQWSAGKLVLIFDAVHWNPEAPPRTLPRVRLRCGK 37

[Close]
BLAST of CmaCh00G001700.1 vs. TrEMBL
Match: A0A103XZH9_CYNCS (C2 membrane targeting protein OS=Cynara cardunculus var. scolymus GN=Ccrd_022004 PE=4 SV=1)

HSP 1 Score: 59.3 bits (142), Expect = 3.0e-06
Identity = 24/27 (88.89%), Postives = 26/27 (96.30%), Query Frame = 1 

Query: 1   MGRQWSADKLVLILDAVHWNPEAPPRK 28
           MGRQWSA KLVLILDAVHWNPEAPP++
Sbjct: 618 MGRQWSAGKLVLILDAVHWNPEAPPQR 644

[Close]
BLAST of CmaCh00G001700.1 vs. NCBI nr
Match: gi|223523944|gb|EEF27245.1| (conserved hypothetical protein [Ricinus communis])

HSP 1 Score: 137.5 bits (345), Expect = 1.2e-29
Identity = 69/97 (71.13%), Postives = 74/97 (76.29%), Query Frame = 1 

Query: 1  MGRQWSADKLVLILDAVHWNPEAPPRKLPRVHLRCGRRFLFPQINEEGRSVFFRIPESKA 60
          MGRQWS  KLVLILDAVHWNPEAPPR LPRV LR  ++       EE  S FFR   S+A
Sbjct: 1  MGRQWSTGKLVLILDAVHWNPEAPPRTLPRVRLRSMKK------GEE--SGFFRKTGSEA 60

Query: 61 LCRGGGTGQETAPKKAVLVPNVSPRPTRCVNLGMLYS 98
          LCRGGGTG+ETAPKK + VPN SPRPTRC NLGMLYS
Sbjct: 61 LCRGGGTGKETAPKKEIGVPNASPRPTRCANLGMLYS 89

[Close]
BLAST of CmaCh00G001700.1 vs. NCBI nr
Match: gi|223534076|gb|EEF35794.1| (conserved hypothetical protein [Ricinus communis])

HSP 1 Score: 80.1 bits (196), Expect = 2.3e-12
Identity = 37/48 (77.08%), Postives = 40/48 (83.33%), Query Frame = 1 

Query: 50 SVFFRIPESKALCRGGGTGQETAPKKAVLVPNVSPRPTRCVNLGMLYS 98
          S FFR   S+ALCRGGGTG+ETAPKK + VPN SPRPTRC NLGMLYS
Sbjct: 7  SGFFRKTGSEALCRGGGTGKETAPKKEIGVPNASPRPTRCANLGMLYS 54

[Close]
BLAST of CmaCh00G001700.1 vs. NCBI nr
Match: gi|414864206|tpg|DAA42763.1| (TPA: hypothetical protein ZEAMMB73_123667 [Zea mays])

HSP 1 Score: 77.4 bits (189), Expect = 1.5e-11
Identity = 33/37 (89.19%), Postives = 34/37 (91.89%), Query Frame = 1 

Query: 1  MGRQWSADKLVLILDAVHWNPEAPPRKLPRVHLRCGR 38
          MGRQWSA KLVLILDAVHWNPEAPPR LPRV LRCG+
Sbjct: 1  MGRQWSAGKLVLILDAVHWNPEAPPRTLPRVRLRCGK 37

[Close]
BLAST of CmaCh00G001700.1 vs. NCBI nr
Match: gi|674229877|gb|KFK23662.1| (hypothetical protein AALP_AAs70636U000900 [Arabis alpina])

HSP 1 Score: 75.9 bits (185), Expect = 4.4e-11
Identity = 32/37 (86.49%), Postives = 33/37 (89.19%), Query Frame = 1 

Query: 1  MGRQWSADKLVLILDAVHWNPEAPPRKLPRVHLRCGR 38
          MGRQWSA KLVLI DAVHWNPEAPPR LPRV LRCG+
Sbjct: 1  MGRQWSAGKLVLIFDAVHWNPEAPPRTLPRVRLRCGK 37

[Close]
BLAST of CmaCh00G001700.1 vs. NCBI nr
Match: gi|976913501|gb|KVH99755.1| (C2 membrane targeting protein [Cynara cardunculus var. scolymus])

HSP 1 Score: 59.3 bits (142), Expect = 4.3e-06
Identity = 24/27 (88.89%), Postives = 26/27 (96.30%), Query Frame = 1 

Query: 1   MGRQWSADKLVLILDAVHWNPEAPPRK 28
           MGRQWSA KLVLILDAVHWNPEAPP++
Sbjct: 618 MGRQWSAGKLVLILDAVHWNPEAPPQR 644

The following BLAST results are available for this feature:
BLAST of CmaCh00G001700.1 vs. Swiss-Prot
Match NameE-valueIdentityDescription
BLAST of CmaCh00G001700.1 vs. TrEMBL
Match NameE-valueIdentityDescription
B9TA70_RICCO8.6e-3071.13Putative uncharacterized protein OS=Ricinus communis GN=RCOM_2058800 PE=4 SV=1[more]
B9SKR3_RICCO1.6e-1277.08Putative uncharacterized protein OS=Ricinus communis GN=RCOM_1604210 PE=4 SV=1[more]
A0A096U8H9_MAIZE1.1e-1189.19Uncharacterized protein OS=Zea mays PE=4 SV=1[more]
A0A087G1B0_ARAAL3.1e-1186.49Uncharacterized protein OS=Arabis alpina GN=AALP_AAs70636U000900 PE=4 SV=1[more]
A0A103XZH9_CYNCS3.0e-0688.89C2 membrane targeting protein OS=Cynara cardunculus var. scolymus GN=Ccrd_022004... [more]
BLAST of CmaCh00G001700.1 vs. TAIR10
Match NameE-valueIdentityDescription
BLAST of CmaCh00G001700.1 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|223523944|gb|EEF27245.1|1.2e-2971.13conserved hypothetical protein [Ricinus communis][more]
gi|223534076|gb|EEF35794.1|2.3e-1277.08conserved hypothetical protein [Ricinus communis][more]
gi|414864206|tpg|DAA42763.1|1.5e-1189.19TPA: hypothetical protein ZEAMMB73_123667 [Zea mays][more]
gi|674229877|gb|KFK23662.1|4.4e-1186.49hypothetical protein AALP_AAs70636U000900 [Arabis alpina][more]
gi|976913501|gb|KVH99755.1|4.3e-0688.89C2 membrane targeting protein [Cynara cardunculus var. scolymus][more]
GO Annotation
GO Assignments
This mRNA is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameType
CmaCh00G001700CmaCh00G001700gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameType
CmaCh00G001700.1CmaCh00G001700.1-proteinpolypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameType
CmaCh00G001700.1.CDS.2CmaCh00G001700.1.CDS.2CDS
CmaCh00G001700.1.CDS.1CmaCh00G001700.1.CDS.1CDS


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameType
CmaCh00G001700.1.exon.2CmaCh00G001700.1.exon.2exon
CmaCh00G001700.1.exon.1CmaCh00G001700.1.exon.1exon