CmaCh00G001440.1 (mRNA) Cucurbita maxima (Rimu) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CmaCh00G001440.1
Type	mRNA
Organism	Cucurbita maxima (Cucurbita maxima (Rimu))
Description	Zinc finger C-x8-C-x5-C-x3-H type protein
Location	Cma_Chr00 : 7966517 .. 7968604 (-)
Sequence length	1288

Genome Viewer

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRexonCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

TCCGCATCCATCGTGATTTTCCGTCCTCTTGCCCTACACGACGCCGAACACGAAATGTTAACGCTAATTCCTCTCTCACAATCCAACCCTCTCAACTGCGGATTCTAATCTCTGAATCATTCCAACTCCGAATTTTGATTTTCCAGGTACGTCTTCTACTCATTTCCTTGCACTCAAACCACAGTCTTCCGGCTGCGTTGTGTTCGATCTCGAACAATTTCAAATCGATCTTCAGGATATTTTGTATTCTGTCGGTGTGACTTCGAATTGAACTTGAGCCTTCACGTTTTCCATTTTGGACTCCGCACCGATCTGCACTTGCGTTTTAACTGACGTCTTTTTCACAATGTTGTGTGCATCTTAATTTGCGTTTTGAATGGAGCCCTAACATGTTTGATCCTATCATTTTGAACGAATTATTTGCTCTGCAAATGACTGTTAGATCTTCTCTGTTCTCTGCTTTAGCATCTGAATCTTTTGTTCGTATTCATCATCCGCCGTTTCTGTAAGTTTAATTCACCGATTCCCTTGGAGAGTACTGCATCAGGATTGAACAAATCTCTGTTTCGAAATATTAGGGACATGAGCCTGGACATCAATTCTACGTCGCCAATGAACACTTCAAAATGCTGATAGATCTTCTTTTCTCCGTGCATAAAATTGCCTTTGATATCAGAAATTTCAGGTTCTTTTCCTGACTCATGGAAGATCGCCAGGGCAAGAGGAGCTCCAAAGCGTCAATCATCAAAGGCCTGAACCCTACGGTTCGGCCGATCAAAATTCAGATGGACAATCACCTCGTAATCGGCGGGACCGGACACTATCACCAAGAAACAAACTCCAAAATTCCAACAATTCTTGATCGTTACGCCGAGAAGCATGACCGTTCAACACCGATCGTAAGTTACTTCCGCTCTCGATCTCCCGTGGTAGGAAAATTACCATCCGCCGGCGACACATTTTCTACTCCGGTTGCGGACGTCATCAATGCCAGCTACCGGTCCTCTATTATCAACCACTTCGCCAGCAGCACTTCCGGAAGCAGTAGCTTCGGTTCTCGGAGAGGAGGATCGTCTTTGTCACCACTTTCGGCTCTAGAGAATTTGGAAACGACACCTGTAAGGTCTCCACAAATTTATGGGACTCCATTGAAGGTCCATGAGGAAGTGATAGTAATGGATGAAATTTTGATCAGTTCGGTCCATGGAGGAGCGAAGACACTGAAGTCTGCCTTAGATTCCGGAAGCGGCGGCGGCTCATCGTTAAGCAAAAATCAATACAGAACGGACATTTGCCGCTCCTGGGAGGATTCTGGAAGCTGCCGCTTCGGCCACAAATGCCAGGTTAGTTATCTTGTCCCCACTGCAATGATACGATCTGAATAACTTCAATTTATATGCTGAGTAGGCATACTTTTTTTCAAACAATTTTCTCAATCAGACGCGTTAAATTTTTGGGAAAAAAATTGATCTGTATTAAATGGAGTTGGGTTTTGTAAATTGTATGTGCTATATGCAGTTTGCACATGGAAAGGAGGAGCTTCGGCCAGTTCATTTACCTGTTAAAACCAAACCTAAGGTACCATCGACATGTGATGATTAAATATAGTGCAAAATTTGTTGGAATAAAAAAGTTAGATTTTGCATATTTCTTTGCTACTACAGTTTGGTGAACCATATTTGACGCATGGTCTCAAGTCCCGCAACAATCATTCACTAACAGGAATAGCTGCAACAACGCAATCCAACTCACTCTATGCCACCTTCAAAACTGAACTTAACAGAAGAGGTCATTCAATAAATTCAATACACAACCTGAACACTGATTGGTCACCTGACGATGATGGCATCGAAGTTGTTGTCCCCGAAACGAAGTCCACAAGGGGAGATGTAGACCAACACATCCTTGAGGTTCTTTATGGTTCCACCACTGAGAGAGCCAAAAAGAGGCTTCCAGTTTTCGTTCAACTTTGCTCATCCCGACTAGAAGAATAGGGAGGGCCAAAGTTTTTTCCATCTTAAACTCATTTCTTGGAAATGCATACACCATTTTGTTTTGAAACACTCATACTTAGCTTATGCGCATGTG

mRNA sequence

TCCGCATCCATCGTGATTTTCCGTCCTCTTGCCCTACACGACGCCGAACACGAAATGTTAACGCTAATTCCTCTCTCACAATCCAACCCTCTCAACTGCGGATTCTAATCTCTGAATCATTCCAACTCCGAATTTTGATTTTCCAGGTTCTTTTCCTGACTCATGGAAGATCGCCAGGGCAAGAGGAGCTCCAAAGCGTCAATCATCAAAGGCCTGAACCCTACGGTTCGGCCGATCAAAATTCAGATGGACAATCACCTCGTAATCGGCGGGACCGGACACTATCACCAAGAAACAAACTCCAAAATTCCAACAATTCTTGATCGTTACGCCGAGAAGCATGACCGTTCAACACCGATCGTAAGTTACTTCCGCTCTCGATCTCCCGTGGTAGGAAAATTACCATCCGCCGGCGACACATTTTCTACTCCGGTTGCGGACGTCATCAATGCCAGCTACCGGTCCTCTATTATCAACCACTTCGCCAGCAGCACTTCCGGAAGCAGTAGCTTCGGTTCTCGGAGAGGAGGATCGTCTTTGTCACCACTTTCGGCTCTAGAGAATTTGGAAACGACACCTGTAAGGTCTCCACAAATTTATGGGACTCCATTGAAGGTCCATGAGGAAGTGATAGTAATGGATGAAATTTTGATCAGTTCGGTCCATGGAGGAGCGAAGACACTGAAGTCTGCCTTAGATTCCGGAAGCGGCGGCGGCTCATCGTTAAGCAAAAATCAATACAGAACGGACATTTGCCGCTCCTGGGAGGATTCTGGAAGCTGCCGCTTCGGCCACAAATGCCAGTTTGCACATGGAAAGGAGGAGCTTCGGCCAGTTCATTTACCTGTTAAAACCAAACCTAAGTTTGGTGAACCATATTTGACGCATGGTCTCAAGTCCCGCAACAATCATTCACTAACAGGAATAGCTGCAACAACGCAATCCAACTCACTCTATGCCACCTTCAAAACTGAACTTAACAGAAGAGGTCATTCAATAAATTCAATACACAACCTGAACACTGATTGGTCACCTGACGATGATGGCATCGAAGTTGTTGTCCCCGAAACGAAGTCCACAAGGGGAGATGTAGACCAACACATCCTTGAGGTTCTTTATGGTTCCACCACTGAGAGAGCCAAAAAGAGGCTTCCAGTTTTCGTTCAACTTTGCTCATCCCGACTAGAAGAATAGGGAGGGCCAAAGTTTTTTCCATCTTAAACTCATTTCTTGGAAATGCATACACCATTTTGTTTTGAAACACTCATACTTAGCTTATGCGCATGTG

Coding sequence (CDS)

ATGGAAGATCGCCAGGGCAAGAGGAGCTCCAAAGCGTCAATCATCAAAGGCCTGAACCCTACGGTTCGGCCGATCAAAATTCAGATGGACAATCACCTCGTAATCGGCGGGACCGGACACTATCACCAAGAAACAAACTCCAAAATTCCAACAATTCTTGATCGTTACGCCGAGAAGCATGACCGTTCAACACCGATCGTAAGTTACTTCCGCTCTCGATCTCCCGTGGTAGGAAAATTACCATCCGCCGGCGACACATTTTCTACTCCGGTTGCGGACGTCATCAATGCCAGCTACCGGTCCTCTATTATCAACCACTTCGCCAGCAGCACTTCCGGAAGCAGTAGCTTCGGTTCTCGGAGAGGAGGATCGTCTTTGTCACCACTTTCGGCTCTAGAGAATTTGGAAACGACACCTGTAAGGTCTCCACAAATTTATGGGACTCCATTGAAGGTCCATGAGGAAGTGATAGTAATGGATGAAATTTTGATCAGTTCGGTCCATGGAGGAGCGAAGACACTGAAGTCTGCCTTAGATTCCGGAAGCGGCGGCGGCTCATCGTTAAGCAAAAATCAATACAGAACGGACATTTGCCGCTCCTGGGAGGATTCTGGAAGCTGCCGCTTCGGCCACAAATGCCAGTTTGCACATGGAAAGGAGGAGCTTCGGCCAGTTCATTTACCTGTTAAAACCAAACCTAAGTTTGGTGAACCATATTTGACGCATGGTCTCAAGTCCCGCAACAATCATTCACTAACAGGAATAGCTGCAACAACGCAATCCAACTCACTCTATGCCACCTTCAAAACTGAACTTAACAGAAGAGGTCATTCAATAAATTCAATACACAACCTGAACACTGATTGGTCACCTGACGATGATGGCATCGAAGTTGTTGTCCCCGAAACGAAGTCCACAAGGGGAGATGTAGACCAACACATCCTTGAGGTTCTTTATGGTTCCACCACTGAGAGAGCCAAAAAGAGGCTTCCAGTTTTCGTTCAACTTTGCTCATCCCGACTAGAAGAATAG

Protein sequence

MEDRQGKRSSKASIIKGLNPTVRPIKIQMDNHLVIGGTGHYHQETNSKIPTILDRYAEKHDRSTPIVSYFRSRSPVVGKLPSAGDTFSTPVADVINASYRSSIINHFASSTSGSSSFGSRRGGSSLSPLSALENLETTPVRSPQIYGTPLKVHEEVIVMDEILISSVHGGAKTLKSALDSGSGGGSSLSKNQYRTDICRSWEDSGSCRFGHKCQFAHGKEELRPVHLPVKTKPKFGEPYLTHGLKSRNNHSLTGIAATTQSNSLYATFKTELNRRGHSINSIHNLNTDWSPDDDGIEVVVPETKSTRGDVDQHILEVLYGSTTERAKKRLPVFVQLCSSRLEE

Homology

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BLAST of CmaCh00G001440.1 vs. Swiss-Prot
Match: Z36L3_MOUSE (Zinc finger protein 36, C3H1 type-like 3 OS=Mus musculus GN=Zfp36l3 PE=1 SV=1)

HSP 1 Score: 61.6 bits (148), Expect = 1.9e-08
Identity = 27/54 (50.00%), Postives = 38/54 (70.37%), Query Frame = 1


Query: 182 SGGGSSLSKNQYRTDICRSWEDSGSCRFGHKCQFAHGKEELRPV--HLPVKTKP 234
           SG  S  +  +Y+T++CR +E+SG C++GHKCQFAHG  ELR +  H   KT+P
Sbjct: 112 SGSSSLATSERYKTELCRPFEESGICKYGHKCQFAHGYRELRTLSRHPKYKTEP 165

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BLAST of CmaCh00G001440.1 vs. Swiss-Prot
Match: TISD_MOUSE (Zinc finger protein 36, C3H1 type-like 2 OS=Mus musculus GN=Zfp36l2 PE=1 SV=2)

HSP 1 Score: 60.5 bits (145), Expect = 4.3e-08
Identity = 26/61 (42.62%), Postives = 40/61 (65.57%), Query Frame = 1


Query: 183 GGGSSLSKNQYRTDICRSWEDSGSCRFGHKCQFAHGKEELRPVHLPVKTKPKFGEPYLTH 242
           G GS ++  +Y+T++CR +E+SG+C++G KCQFAHG  ELR +    K K +    + T 
Sbjct: 146 GSGSQINSTRYKTELCRPFEESGTCKYGEKCQFAHGFHELRSLTRHPKYKTELCRTFHTI 205

Query: 243 G 244
           G
Sbjct: 206 G 206

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BLAST of CmaCh00G001440.1 vs. Swiss-Prot
Match: TIS11_DROME (Protein TIS11 OS=Drosophila melanogaster GN=Tis11 PE=2 SV=2)

HSP 1 Score: 59.3 bits (142), Expect = 9.5e-08
Identity = 22/48 (45.83%), Postives = 36/48 (75.00%), Query Frame = 1


Query: 188 LSKNQYRTDICRSWEDSGSCRFGHKCQFAHGKEELRPVHLPVKTKPKF 236
           ++ ++Y+T++CR +E++G C++G KCQFAHG  ELR VH   K K ++
Sbjct: 131 MNTSRYKTELCRPFEEAGECKYGEKCQFAHGSHELRNVHRHPKYKTEY 178

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BLAST of CmaCh00G001440.1 vs. Swiss-Prot
Match: TISB_MOUSE (Zinc finger protein 36, C3H1 type-like 1 OS=Mus musculus GN=Zfp36l1 PE=2 SV=1)

HSP 1 Score: 58.2 bits (139), Expect = 2.1e-07
Identity = 28/75 (37.33%), Postives = 46/75 (61.33%), Query Frame = 1


Query: 169 GGAKTLKSALDSGSGGGSSLSKNQYRTDICRSWEDSGSCRFGHKCQFAHGKEELRPVHLP 228
           GG + L +    GSG    ++ ++Y+T++CR +E++G+C++G KCQFAHG  ELR +   
Sbjct: 94  GGERLLPTQKQPGSG---QVNSSRYKTELCRPFEENGACKYGDKCQFAHGIHELRSLTRH 153

Query: 229 VKTKPKFGEPYLTHG 244
            K K +    + T G
Sbjct: 154 PKYKTELCRTFHTIG 165

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BLAST of CmaCh00G001440.1 vs. Swiss-Prot
Match: TISB_RAT (Zinc finger protein 36, C3H1 type-like 1 OS=Rattus norvegicus GN=Zfp36l1 PE=2 SV=1)

HSP 1 Score: 58.2 bits (139), Expect = 2.1e-07
Identity = 28/75 (37.33%), Postives = 46/75 (61.33%), Query Frame = 1


Query: 169 GGAKTLKSALDSGSGGGSSLSKNQYRTDICRSWEDSGSCRFGHKCQFAHGKEELRPVHLP 228
           GG + L +    GSG    ++ ++Y+T++CR +E++G+C++G KCQFAHG  ELR +   
Sbjct: 94  GGERLLPTQKQPGSG---QVNSSRYKTELCRPFEENGACKYGDKCQFAHGIHELRSLTRH 153

Query: 229 VKTKPKFGEPYLTHG 244
            K K +    + T G
Sbjct: 154 PKYKTELCRTFHTIG 165

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BLAST of CmaCh00G001440.1 vs. TrEMBL
Match: A0A0A0K529_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_7G103290 PE=4 SV=1)

HSP 1 Score: 308.1 bits (788), Expect = 1.3e-80
Identity = 171/259 (66.02%), Postives = 201/259 (77.61%), Query Frame = 1


Query: 104 INHFASSTSGSSSFGSRRGGSSLSPLSALENLETTPVRSPQIYGTPLKVHEEVIVMDEIL 163
           +NH+ASSTSGS+SFGSR  G SLSPLSA+ENLET P+RSPQIYGTP+KV EEVIVMD IL
Sbjct: 1   MNHYASSTSGSNSFGSRGAGLSLSPLSAIENLETPPIRSPQIYGTPMKVDEEVIVMDGIL 60

Query: 164 ISSVHGGAKTLKSALDSGSGGGSSLSKNQYRTDICRSWEDSGSCRFGHKCQFAHGKEELR 223
           ISS+HG AKT++S LDSGSGGG    KNQYR+DICR WEDSG+CRFG+KCQFAHGKE+LR
Sbjct: 61  ISSIHGEAKTVRSPLDSGSGGG---GKNQYRSDICRYWEDSGTCRFGNKCQFAHGKEDLR 120

Query: 224 PVHLPVKTKPKFGEPYLTHGLKSRNNHSLTGIAATT----QSNSLYATFKTELNRR---- 283
           P  LPV+TK KF E   T+G K RNNHSLTGIAATT     SN +    KTEL++R    
Sbjct: 121 PGRLPVRTKTKFSE---TYGSKFRNNHSLTGIAATTTTQSNSNLVDTITKTELSKRGLTP 180

Query: 284 ------GHSINSIHNLNT----DWSPDDDGIEVVVPETKST-RGDVDQHILEVLYGSTTE 343
                 GH+ N+   ++T    +WSP+DDGI++ VP T+ST R DV+QHI EVLYGSTTE
Sbjct: 181 TSSTLKGHTNNNPTLISTISIINWSPEDDGIKIAVPGTESTKREDVNQHIHEVLYGSTTE 240

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BLAST of CmaCh00G001440.1 vs. TrEMBL
Match: A5B230_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_026075 PE=4 SV=1)

HSP 1 Score: 155.6 bits (392), Expect = 1.1e-34
Identity = 107/280 (38.21%), Postives = 154/280 (55.00%), Query Frame = 1


Query: 82  SAGDTFSTPVADVINASYRSSIINHFASSTSGSSSFGSRRGGSSLSPLSALENLETTPVR 141
           +AGD F+TPV+D   + YRS + ++  SS+ G  S  SR      SPLS +ENLE TP  
Sbjct: 40  AAGDGFTTPVSDA--SMYRSLLTHYQHSSSDGLGSLPSRG-----SPLSLVENLEVTPTP 99

Query: 142 SPQIYGTPLKVHEEVIVMDEILISSVHG--GAKTLKSALDSGSGGGSSLSKNQYRTDICR 201
           +       +KV E+V+VMD I++ S+ G  G +++ S     S   ++     Y+T+ICR
Sbjct: 100 A-------VKVEEDVLVMDGIMVESMAGMKGMRSVSSDSSGSSSAAAASGNGLYKTEICR 159

Query: 202 SWEDSGSCRFGHKCQFAHGKEELRPVHLPVKTKPKFG-------EPYLTHGLKSRNNHSL 261
           SWED  SCR+G KCQFAHGKEELRP+   ++T+P+              +G + R +H +
Sbjct: 160 SWEDLASCRYGAKCQFAHGKEELRPLRYSMRTRPEGNVCKQFAVTGTCPYGPRCRFSHQI 219

Query: 262 TGIAATTQSNSLYATFKTELNRRGHSINSIHNLNT--------DWSPDDDGIEVVVP--- 321
             + +TTQ            +R  H+      + T        DWSP DDGIEVV+P   
Sbjct: 220 QSLLSTTQQT-------PSPSRPQHTAAXTPTIKTATPTKTTADWSPMDDGIEVVLPGSS 279

Query: 322 -ETKSTRGDVDQHILEVLYGSTTERAKKRLPVFVQLCSSR 341
            E  ++R +V+ +I   LYG TT R  +RLPVF ++C SR
Sbjct: 280 AEKPASRDEVNTYINSFLYGPTTPR--RRLPVFEEICPSR 296

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BLAST of CmaCh00G001440.1 vs. TrEMBL
Match: K7L5F5_SOYBN (Uncharacterized protein OS=Glycine max GN=GLYMA_08G075000 PE=4 SV=1)

HSP 1 Score: 139.8 bits (351), Expect = 6.1e-30
Identity = 114/341 (33.43%), Postives = 174/341 (51.03%), Query Frame = 1


Query: 7   KRSSKASIIKG--LNPTVRPIKIQMDNHLVIGGTGHYHQETNSKIPTILDRYAEKHDRST 66
           +RS+   ++K   LN  V P++I  +        G Y Q T   +      +AE  D  +
Sbjct: 2   ERSNSKKVLKSRLLNENVPPLQIDSEER-----RGRYLQPT--AMSPRFQPFAENVDAGS 61

Query: 67  PIVSYFRSRSPVVGKLPSAGDTFSTPVADVINASYRSSIINHFASSTSGSSSFGSRRGGS 126
           P+  Y  + SP+ GK  +A + F +P      A      + +  +S+ GSSSFGSR G  
Sbjct: 62  PLTRYLFAGSPLSGKFAAASEAFVSPKFGARTAK----ALQYCGTSSGGSSSFGSR-GRL 121

Query: 127 SLSPLSALENLETTPVRSPQIYGTPLKVHEEVIVMDEILISSVHGGAKTLKSALDSGSG- 186
           + SPLS+LEN+E  P+ SP +Y TP    ++VIVMD IL+  V GG K+ +S+  SG G 
Sbjct: 122 TPSPLSSLENMEFAPLLSPPVYRTPSTGDDDVIVMDAILVRPVSGG-KSGRSSSSSGRGS 181

Query: 187 --GGSSLSKNQYRTDICRSWEDSGSCRFGHKCQFAHGKEELRPVHLPVKTKPKFGEPYLT 246
               SS  KN ++T+IC++ E+SG+ R+  K Q+    EE R + L  K K +      +
Sbjct: 182 FSSSSSTGKNVFKTEICKAREESGNSRYNSKSQYGRVPEEYRSIILARKRKSEEETSSSS 241

Query: 247 HGLKSRNNHSLTGI---AATTQSNSLYATFKTELNRRGHSINSIHNLNTDWSPDDDGIEV 306
            G  S  +   + +    A  +S+ +  T     +   H+  +  N   DWSP DD  EV
Sbjct: 242 VGAGSSMHDPSSHVHQHYAAAESDPVVVT-SQPTSAEPHNALTDSNAFNDWSPLDDITEV 301

Query: 307 VVP--ETKSTRGDVDQHILEVLYGSTTERAKKRLPVFVQLC 338
           V+P  +   +R +VD +I  + +G T    KKRLPVF  +C
Sbjct: 302 VLPASDKAPSREEVDAYISGIQHGRT---GKKRLPVFEAIC 325

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BLAST of CmaCh00G001440.1 vs. TrEMBL
Match: K7KPS7_SOYBN (Uncharacterized protein OS=Glycine max GN=GLYMA_05G120200 PE=4 SV=1)

HSP 1 Score: 136.0 bits (341), Expect = 8.9e-29
Identity = 113/355 (31.83%), Postives = 169/355 (47.61%), Query Frame = 1


Query: 1   MEDRQGKRSSKASIIKGLNPTVRPIKIQMDNHLVIGGTGHYHQETNSKIPTILDRYAEKH 60
           ME    K+ S  S +   N  V P++I  +        G Y Q T   +      YAE  
Sbjct: 1   MERSNSKKKSLKSRLS--NENVPPLQIDSEER-----RGRYLQPT--AMSPRFQPYAENI 60

Query: 61  DRSTPIVSYFRSRSPVVGKLPSAGDTFSTPVADVINASYRSSIINHFASSTSGSSSFGSR 120
           D  +P+  +  + SP+ GK+   G+ F +P      A      + +  +S+ GSSSF SR
Sbjct: 61  DAGSPLTRHLFAGSPLSGKVAGDGEAFISPKFGARTAK----ALQYCGTSSGGSSSFCSR 120

Query: 121 RGGSSLSPLSALENLETTPVRSPQIYGTPLKVHEEVIVMDEILISSVHGGAKTLKSALDS 180
            G  + SPLS+LEN+E  P+RSP +Y TP    ++VIVMD IL+  V GG     S+  S
Sbjct: 121 -GWLTSSPLSSLENMEIAPLRSPPVYRTPSTGDDDVIVMDAILVRPVSGGTSGRSSSSSS 180

Query: 181 GSGGGSSLSKNQYRTDICRSWEDSGSCRFGHKCQFAHGKEELRPVHLPVKTKPK------ 240
                SS +K+ ++T+IC++ E+SG+ R+  K Q+    EE R + L  K K +      
Sbjct: 181 RGSSSSSTAKSVFKTEICKAREESGNSRYNSKSQYGRVPEEDRSIILARKRKSEAETSSS 240

Query: 241 -FGEPYLTHGLKS---------RNNHSLTGIAATTQSNSLYATFKTELNRRGHSINSIHN 300
             G    THG  S          ++ +++    T+  +    T     +   H   +  N
Sbjct: 241 SVGAESSTHGPSSDVHQQYAAAESDPAVSTSQPTSAESDHEVTTSEPTSAETHDTLTDSN 300

Query: 301 LNTDWSPDDDGIEVVV--PETKSTRGDVDQHILEVLYGSTTERAKKRLPVFVQLC 338
              DWSP DDGIEVV+   +   +R  VD HI  + +G T    K+RL VF  +C
Sbjct: 301 TFNDWSPLDDGIEVVLLGSDKAPSREQVDVHISGIQHGWT---GKRRLLVFEAIC 338

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BLAST of CmaCh00G001440.1 vs. TrEMBL
Match: A0A072UPE4_MEDTR (Uncharacterized protein OS=Medicago truncatula GN=MTR_4g094292 PE=4 SV=1)

HSP 1 Score: 131.0 bits (328), Expect = 2.9e-27
Identity = 85/233 (36.48%), Postives = 137/233 (58.80%), Query Frame = 1


Query: 11  KASIIKGLNPTVRPIKIQMDNHLVIGGTGHYHQETNSKIPTILDRYAEKHDRS---TPIV 70
           K S ++  N  V P+ +++D++      G  + ++ +  P      AE  D +   + + 
Sbjct: 3   KVSKLRTSNENVSPLMVELDDN-----RGLRYLQSTTVSPGFQPYAAENFDVTGSPSQLA 62

Query: 71  SYFRSRSPVVGKLPSAGDTFSTPVADVINASYRSSIINHFA--SSTSGSSSFGSRRGGSS 130
            YF + SPV  K   +GD+F++P+    ++ YR +    ++  S++SG +S  S RG  S
Sbjct: 63  KYFYAVSPVSAK---SGDSFTSPIYG--SSKYRLAKTPPYSGTSNSSGGNSSFSSRGRLS 122

Query: 131 LSPLSALENLETTPVRSPQIYGTPLKVHEEVIVMDEILISSVHGGAKTLKSALDSGSGGG 190
           LSPL+++ENLE   + SP++Y TP+K  EEVIVMD+I + S+ GG     S+  S SG G
Sbjct: 123 LSPLASIENLERKQLSSPRMYQTPVKGGEEVIVMDDIQVRSMSGGKNRRSSSSSSSSGRG 182

Query: 191 SSLSKNQ------YRTDICRSWEDSGSCRFGHKCQFAHGKEELRPVHLPVKTK 233
           SS S +       ++ ++CR+WE+SG+CR+  KCQFAHG+EEL    L +K+K
Sbjct: 183 SSSSSSSSSKSVLFKKEVCRAWEESGNCRYNSKCQFAHGREELHLSRLSMKSK 225

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BLAST of CmaCh00G001440.1 vs. TAIR10
Match: AT1G66810.1 (AT1G66810.1 Zinc finger C-x8-C-x5-C-x3-H type family protein)

HSP 1 Score: 51.6 bits (122), Expect = 1.1e-06
Identity = 24/65 (36.92%), Postives = 38/65 (58.46%), Query Frame = 1


Query: 194 RTDICRSWEDSGSCRFGHKCQFAHGKEELRPVHLPVKTKPKFGEPYLT-----HGLKSRN 253
           +T++C  W+++G+C +G  CQFAHG +ELRPV    + K +     +T     +G +   
Sbjct: 234 KTELCNKWQETGACCYGDNCQFAHGIDELRPVIRHPRYKTEVCRMMVTGAMCPYGHRCHF 293

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BLAST of CmaCh00G001440.1 vs. TAIR10
Match: AT1G68200.1 (AT1G68200.1 Zinc finger C-x8-C-x5-C-x3-H type family protein)

HSP 1 Score: 50.1 bits (118), Expect = 3.2e-06
Identity = 17/32 (53.12%), Postives = 26/32 (81.25%), Query Frame = 1


Query: 194 RTDICRSWEDSGSCRFGHKCQFAHGKEELRPV 226
           +T++C  W+++G+C +G  CQFAHG +ELRPV
Sbjct: 224 KTELCNKWQETGTCPYGDHCQFAHGIKELRPV 255

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BLAST of CmaCh00G001440.1 vs. TAIR10
Match: AT1G32360.1 (AT1G32360.1 Zinc finger (CCCH-type) family protein)

HSP 1 Score: 48.9 bits (115), Expect = 7.2e-06
Identity = 26/63 (41.27%), Postives = 32/63 (50.79%), Query Frame = 1


Query: 166 SVHGGAKTLKSALDSGSGGGSS------LSKNQYRTDICRSWEDSGSCRFGHKCQFAHGK 223
           SV GG  +    +  G GG  S      L  + ++T IC  WE +G C FG KC FAHG 
Sbjct: 228 SVGGGGSSSNVVVLGGGGGSGSGSGIQILKPSNWKTRICNKWEITGYCPFGAKCHFAHGA 287

[Close]

BLAST of CmaCh00G001440.1 vs. NCBI nr
Match: gi|449462413|ref|XP_004148935.1| (PREDICTED: uncharacterized protein LOC101215865 [Cucumis sativus])

HSP 1 Score: 310.1 bits (793), Expect = 4.9e-81
Identity = 172/261 (65.90%), Postives = 203/261 (77.78%), Query Frame = 1


Query: 102 SIINHFASSTSGSSSFGSRRGGSSLSPLSALENLETTPVRSPQIYGTPLKVHEEVIVMDE 161
           +I+NH+ASSTSGS+SFGSR  G SLSPLSA+ENLET P+RSPQIYGTP+KV EEVIVMD 
Sbjct: 57  NIMNHYASSTSGSNSFGSRGAGLSLSPLSAIENLETPPIRSPQIYGTPMKVDEEVIVMDG 116

Query: 162 ILISSVHGGAKTLKSALDSGSGGGSSLSKNQYRTDICRSWEDSGSCRFGHKCQFAHGKEE 221
           ILISS+HG AKT++S LDSGSGGG    KNQYR+DICR WEDSG+CRFG+KCQFAHGKE+
Sbjct: 117 ILISSIHGEAKTVRSPLDSGSGGG---GKNQYRSDICRYWEDSGTCRFGNKCQFAHGKED 176

Query: 222 LRPVHLPVKTKPKFGEPYLTHGLKSRNNHSLTGIAATT----QSNSLYATFKTELNRR-- 281
           LRP  LPV+TK KF E   T+G K RNNHSLTGIAATT     SN +    KTEL++R  
Sbjct: 177 LRPGRLPVRTKTKFSE---TYGSKFRNNHSLTGIAATTTTQSNSNLVDTITKTELSKRGL 236

Query: 282 --------GHSINSIHNLNT----DWSPDDDGIEVVVPETKST-RGDVDQHILEVLYGST 341
                   GH+ N+   ++T    +WSP+DDGI++ VP T+ST R DV+QHI EVLYGST
Sbjct: 237 TPTSSTLKGHTNNNPTLISTISIINWSPEDDGIKIAVPGTESTKREDVNQHIHEVLYGST 296

Query: 342 TERAKKRLPVFVQLCSSRLEE 344
           TER KKRLPVFVQ+CS  L+E
Sbjct: 297 TERTKKRLPVFVQICSEELQE 311

[Close]

BLAST of CmaCh00G001440.1 vs. NCBI nr
Match: gi|700188781|gb|KGN44014.1| (hypothetical protein Csa_7G103290 [Cucumis sativus])

HSP 1 Score: 308.1 bits (788), Expect = 1.9e-80
Identity = 171/259 (66.02%), Postives = 201/259 (77.61%), Query Frame = 1


Query: 104 INHFASSTSGSSSFGSRRGGSSLSPLSALENLETTPVRSPQIYGTPLKVHEEVIVMDEIL 163
           +NH+ASSTSGS+SFGSR  G SLSPLSA+ENLET P+RSPQIYGTP+KV EEVIVMD IL
Sbjct: 1   MNHYASSTSGSNSFGSRGAGLSLSPLSAIENLETPPIRSPQIYGTPMKVDEEVIVMDGIL 60

Query: 164 ISSVHGGAKTLKSALDSGSGGGSSLSKNQYRTDICRSWEDSGSCRFGHKCQFAHGKEELR 223
           ISS+HG AKT++S LDSGSGGG    KNQYR+DICR WEDSG+CRFG+KCQFAHGKE+LR
Sbjct: 61  ISSIHGEAKTVRSPLDSGSGGG---GKNQYRSDICRYWEDSGTCRFGNKCQFAHGKEDLR 120

Query: 224 PVHLPVKTKPKFGEPYLTHGLKSRNNHSLTGIAATT----QSNSLYATFKTELNRR---- 283
           P  LPV+TK KF E   T+G K RNNHSLTGIAATT     SN +    KTEL++R    
Sbjct: 121 PGRLPVRTKTKFSE---TYGSKFRNNHSLTGIAATTTTQSNSNLVDTITKTELSKRGLTP 180

Query: 284 ------GHSINSIHNLNT----DWSPDDDGIEVVVPETKST-RGDVDQHILEVLYGSTTE 343
                 GH+ N+   ++T    +WSP+DDGI++ VP T+ST R DV+QHI EVLYGSTTE
Sbjct: 181 TSSTLKGHTNNNPTLISTISIINWSPEDDGIKIAVPGTESTKREDVNQHIHEVLYGSTTE 240

[Close]

BLAST of CmaCh00G001440.1 vs. NCBI nr
Match: gi|502142052|ref|XP_004504769.1| (PREDICTED: zinc finger protein 36, C3H1 type-like 2 [Cicer arietinum])

HSP 1 Score: 201.8 bits (512), Expect = 1.9e-48
Identity = 131/341 (38.42%), Postives = 201/341 (58.94%), Query Frame = 1


Query: 12  ASIIKGLNPTVRPIKIQMDNHLVIGGTGHYHQETNSKIPTILDRYAEKHDRSTPIVSYFR 71
           + + + LN  V P+++++D+       G Y Q T   +      YAE  D  +P+  YF 
Sbjct: 14  SKVRRTLNENVSPLQVELDDK-----RGRYLQSTT--MSPGFQPYAENIDTGSPLARYFF 73

Query: 72  SRSPVVGKLPSAGDTFSTPVADVINASYRSSIINHFASSTSGSSSFGSRRGGSSLSPLSA 131
           + SP+ GK   + ++F++P+    ++ YRS+ +  + +++SG+SSFGSR G  SLSPLS+
Sbjct: 74  AGSPISGK---SSESFTSPIFG--SSKYRSARMQQYCATSSGNSSFGSR-GRLSLSPLSS 133

Query: 132 LENLETTPVRSPQIYGTPLKVHEEVIVMDEILISSVHGG--AKTLKSALDSGSGGGSSLS 191
           +EN+E  P+ SP +YGTP+KV EEVIVMD+I +  + GG   ++  S+   GSG  SS S
Sbjct: 134 IENMEIKPLMSPPMYGTPVKVDEEVIVMDDIQVRPMSGGKNGRSSSSSSSRGSGSSSSSS 193

Query: 192 KNQYRTDICRSWEDSGSCRFGHKCQFAHGKEELRPVHLPVKTKPKFGEPYL-------TH 251
           K+ Y+TDICR+WE+SG+CR+  KCQFAHG+EEL P  L +K+K +     L       T+
Sbjct: 194 KSVYKTDICRAWEESGNCRYNSKCQFAHGREELHPSRL-MKSKSEAQTSKLSIRLGQGTY 253

Query: 252 GLKSRNNHSLTGIAATTQSNSLYATFKTELNRRGHSINSIHNLNTDWSPDDDGIEVVVP- 311
           G  SR  H    +  +  + +   T +        S ++  N+  DWSP DDGI+VV+P 
Sbjct: 254 GPNSRVVHEHPAVTESECALTGLITSQPASPEPYRSTHANSNIINDWSPLDDGIDVVLPN 313

Query: 312 --ETKSTRGDVDQHILEVLYGSTTERAKKRLPVFVQLCSSR 341
             +   +R +VD +I  +L   TT   K+RLPVFV +C  +
Sbjct: 314 GSDKVPSREEVDAYIFGLLNEPTT---KRRLPVFVAICEGQ 337

[Close]

BLAST of CmaCh00G001440.1 vs. NCBI nr
Match: gi|720016204|ref|XP_010261083.1| (PREDICTED: uncharacterized protein LOC104599994 [Nelumbo nucifera])

HSP 1 Score: 165.2 bits (417), Expect = 2.0e-37
Identity = 117/322 (36.34%), Postives = 169/322 (52.48%), Query Frame = 1


Query: 25  IKIQMDNHLVIGGTGHYHQETNSKIPTILDRYAEKHDRSTPIVSYFRSRSPVVGKLPSAG 84
           I  Q D+ L++G  G Y   +++  P I +      D  + ++ Y R+       L  + 
Sbjct: 21  ISPQSDDQLILGRRGRYGFTSSAFDPQIHNPL----DVDSTLIRYSRATG---ASLSPSA 80

Query: 85  DTFSTPVADVINASYRSSIINHFASSTSGSSSFGSRRGGSSLSPLSALENLETTPVRSPQ 144
           D F + + D  +  +   +++    S  GSS           SPLS++ENLET P +SP 
Sbjct: 81  DVFPSQIID--STKFHPLLLHRSNISPRGSSP----------SPLSSIENLETPPSKSPP 140

Query: 145 IYGTPLKVHEEVIVMDEILISSVHGGAKTLKSALDSGSGGGSSLSKNQYRTDICRSWEDS 204
           ++ TP+KV E+V+VMD IL+ SV GG    +S  DSGS   SS   + Y+T+ICR+WED+
Sbjct: 141 VFATPVKVEEDVLVMDGILVGSVPGGRT--RSGPDSGS---SSSGNSLYKTEICRAWEDT 200

Query: 205 GSCRFGHKCQFAHGKEELRPVHLPVKTKPK------FGEPYLTHGLKSRNNHSLTGIAAT 264
           G+CR+G KCQFAHGKEELRP  +  K K +      F      +G K R  H +   + +
Sbjct: 201 GNCRYGSKCQFAHGKEELRPTRVSSKNKSEGQLCKSFATGTCAYGSKCRFIHHMAVSSPS 260

Query: 265 TQSNSLYATFKTELNRRGHSINSIHNLNTDWSPDDDGIEVVVPETKS---TRGDVDQHIL 324
             + S  AT              I     DWSP DDGIEV +P +     TR DV+ +I 
Sbjct: 261 RTATSAGAT------------TMIKPEQDDWSPADDGIEVRLPSSTEHCPTREDVNLYIH 303

Query: 325 EVLYGSTTERAKKRLPVFVQLC 338
           +VLYG +    +KRLPVF ++C
Sbjct: 321 DVLYGPS---RRKRLPVFAEIC 303

[Close]

BLAST of CmaCh00G001440.1 vs. NCBI nr
Match: gi|731397458|ref|XP_010652879.1| (PREDICTED: tristetraprolin [Vitis vinifera])

HSP 1 Score: 156.4 bits (394), Expect = 9.1e-35
Identity = 107/280 (38.21%), Postives = 155/280 (55.36%), Query Frame = 1


Query: 82  SAGDTFSTPVADVINASYRSSIINHFASSTSGSSSFGSRRGGSSLSPLSALENLETTPVR 141
           +AGD F+TPV+D   + YRS + ++  SS+ G  S  SR      SPLS +ENLE TP  
Sbjct: 40  AAGDGFTTPVSDA--SMYRSLLTHYQHSSSDGLGSLPSRG-----SPLSLVENLEVTPTP 99

Query: 142 SPQIYGTPLKVHEEVIVMDEILISSVHG--GAKTLKSALDSGSGGGSSLSKNQYRTDICR 201
           +       +KV E+V+VMD I++ S+ G  G +++ S     S   ++     Y+T+ICR
Sbjct: 100 A-------VKVEEDVLVMDGIMVESMAGMKGMRSVSSDSSGSSSAAAASGNGLYKTEICR 159

Query: 202 SWEDSGSCRFGHKCQFAHGKEELRPVHLPVKTKPKFG-------EPYLTHGLKSRNNHSL 261
           SWED  SCR+G KCQFAHGKEELRP+   ++T+P+              +G + R +H +
Sbjct: 160 SWEDLASCRYGAKCQFAHGKEELRPLRYSMRTRPEGNVCKQFAVTGTCPYGPRCRFSHQI 219

Query: 262 TGIAATTQSNSLYATFKTELNRRGHSINSIHNLNT--------DWSPDDDGIEVVVP--- 321
             + +TTQ            +R  H+  +   + T        DWSP DDGIEVV+P   
Sbjct: 220 QSLLSTTQQT-------PSPSRPQHTAATTPTIKTATPTKTTADWSPMDDGIEVVLPGSS 279

Query: 322 -ETKSTRGDVDQHILEVLYGSTTERAKKRLPVFVQLCSSR 341
            E  ++R +V+ +I   LYG TT R  +RLPVF ++C SR
Sbjct: 280 AEKPASRDEVNTYINSFLYGPTTPR--RRLPVFEEICPSR 296

The following BLAST results are available for this feature:

BLAST of CmaCh00G001440.1 vs. Swiss-Prot


Match Name	E-value	Identity	Description
Z36L3_MOUSE	1.9e-08	50.00	Zinc finger protein 36, C3H1 type-like 3 OS=Mus musculus GN=Zfp36l3 PE=1 SV=1	[more]
TISD_MOUSE	4.3e-08	42.62	Zinc finger protein 36, C3H1 type-like 2 OS=Mus musculus GN=Zfp36l2 PE=1 SV=2	[more]
TIS11_DROME	9.5e-08	45.83	Protein TIS11 OS=Drosophila melanogaster GN=Tis11 PE=2 SV=2	[more]
TISB_MOUSE	2.1e-07	37.33	Zinc finger protein 36, C3H1 type-like 1 OS=Mus musculus GN=Zfp36l1 PE=2 SV=1	[more]
TISB_RAT	2.1e-07	37.33	Zinc finger protein 36, C3H1 type-like 1 OS=Rattus norvegicus GN=Zfp36l1 PE=2 SV...	[more]

BLAST of CmaCh00G001440.1 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0K529_CUCSA	1.3e-80	66.02	Uncharacterized protein OS=Cucumis sativus GN=Csa_7G103290 PE=4 SV=1	[more]
A5B230_VITVI	1.1e-34	38.21	Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_026075 PE=4 SV=1	[more]
K7L5F5_SOYBN	6.1e-30	33.43	Uncharacterized protein OS=Glycine max GN=GLYMA_08G075000 PE=4 SV=1	[more]
K7KPS7_SOYBN	8.9e-29	31.83	Uncharacterized protein OS=Glycine max GN=GLYMA_05G120200 PE=4 SV=1	[more]
A0A072UPE4_MEDTR	2.9e-27	36.48	Uncharacterized protein OS=Medicago truncatula GN=MTR_4g094292 PE=4 SV=1	[more]

BLAST of CmaCh00G001440.1 vs. TAIR10


Match Name	E-value	Identity	Description
AT1G66810.1	1.1e-06	36.92	Zinc finger C-x8-C-x5-C-x3-H type family protein	[more]
AT1G68200.1	3.2e-06	53.13	Zinc finger C-x8-C-x5-C-x3-H type family protein	[more]
AT1G32360.1	7.2e-06	41.27	Zinc finger (CCCH-type) family protein	[more]

BLAST of CmaCh00G001440.1 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|449462413\|ref\|XP_004148935.1\|	4.9e-81	65.90	PREDICTED: uncharacterized protein LOC101215865 [Cucumis sativus]	[more]
gi\|700188781\|gb\|KGN44014.1\|	1.9e-80	66.02	hypothetical protein Csa_7G103290 [Cucumis sativus]	[more]
gi\|502142052\|ref\|XP_004504769.1\|	1.9e-48	38.42	PREDICTED: zinc finger protein 36, C3H1 type-like 2 [Cicer arietinum]	[more]
gi\|720016204\|ref\|XP_010261083.1\|	2.0e-37	36.34	PREDICTED: uncharacterized protein LOC104599994 [Nelumbo nucifera]	[more]
gi\|731397458\|ref\|XP_010652879.1\|	9.1e-35	38.21	PREDICTED: tristetraprolin [Vitis vinifera]	[more]

Annotated Terms

The following terms have been associated with this mRNA:

Vocabulary: **INTERPRO**
Term	Definition
IPR000571	Znf_CCCH

Vocabulary: **Molecular Function**
Term	Definition
GO:0046872	metal ion binding

GO Annotation

GO Assignments

This mRNA is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0046872	metal ion binding

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
CmaCh00G001440	CmaCh00G001440	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
CmaCh00G001440.1	CmaCh00G001440.1-protein	polypeptide

The following three_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
CmaCh00G001440.1.three_prime_UTR.1	CmaCh00G001440.1.three_prime_UTR.1	three_prime_UTR

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
CmaCh00G001440.1.CDS.3	CmaCh00G001440.1.CDS.3	CDS
CmaCh00G001440.1.CDS.2	CmaCh00G001440.1.CDS.2	CDS
CmaCh00G001440.1.CDS.1	CmaCh00G001440.1.CDS.1	CDS

The following five_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
CmaCh00G001440.1.five_prime_UTR.2	CmaCh00G001440.1.five_prime_UTR.2	five_prime_UTR
CmaCh00G001440.1.five_prime_UTR.1	CmaCh00G001440.1.five_prime_UTR.1	five_prime_UTR

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
CmaCh00G001440.1.exon.4	CmaCh00G001440.1.exon.4	exon
CmaCh00G001440.1.exon.3	CmaCh00G001440.1.exon.3	exon
CmaCh00G001440.1.exon.2	CmaCh00G001440.1.exon.2	exon
CmaCh00G001440.1.exon.1	CmaCh00G001440.1.exon.1	exon

InterPro

Analysis Name: InterPro Annotations of Cucurbita maxima
Date Performed: 2017-05-20


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR000571	Zinc finger, CCCH-type	GENE3D	G3DSA:4.10.1000.10		coord: 190..225 score: 2.6
IPR000571	Zinc finger, CCCH-type	PFAM	PF00642	zf-CCCH	coord: 193..219 score: 3.
IPR000571	Zinc finger, CCCH-type	SMART	SM00356	c3hfinal6	coord: 192..219 score: 5.
IPR000571	Zinc finger, CCCH-type	PROFILE	PS50103	ZF_C3H1	coord: 192..220 score: 15
IPR000571	Zinc finger, CCCH-type	unknown	SSF90229	CCCH zinc finger	coord: 192..224 score: 5.8
None	No IPR available	PANTHER	PTHR12547	CCCH ZINC FINGER/TIS11-RELATED	coord: 183..234 score: 6.8E-12coord: 251..279 score: 6.8
None	No IPR available	PANTHER	PTHR12547:SF72	ZINC FINGER PROTEIN 36, C3H1 TYPE-LIKE 2	coord: 251..279 score: 6.8E-12coord: 183..234 score: 6.8