Cla97C10G192400.1 (mRNA) Watermelon (97103) v2 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Cla97C10G192400.1
Type	mRNA
Organism	Citrullus lanatus (Watermelon (97103) v2)
Description	30S ribosomal protein S11
Location	Cla97Chr10 : 18835663 .. 18836484 (+)
Sequence length	726

Genome Viewer

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGTCCTCCCTCCACCGATCAGATCTCACTGGATCCGTTCAACTAGACAGCCGGGTCTCAGGTTAGTTATATTCCCTATTTTCTATCTGATACGAGAAATGACAATTCGAATTTATGGAGTGTTTTTCTTTAGTGATGAATATTTTGCGGATTTCAGGGTGTCTCGGCATTTCGCAAGGTGATTCTGCGAATGTTGGTCGGGAGATTGTTGGACGTGGTTGGAAAGCCTTGGGAGCTCAGGGTTCTTGTTGGGGTTTGGCGCGTTCAAATGAAAGTGTCTCCGTTCCTTATTCTATTAGCTCTAGATGTTATGGACAGTACAATAACTGGCCAAATGCAGATACAGGAAGAAATCTTAAGTCTATGAGTTTTGTTAAGGGAATTTTAGAGGAAGATGGAAGAGATTTTACAGGTAGTTCTCGGTTCCCTAGACCACCCAATATGGAACACAATGCTGATATTGTTCATGTAAAGCTGATGCGTAACAATACATTTATCACTGTTACGGATTACAAGGGAAATACAAAGCTCAAGGCCTCTGCTGGTCGTCTTGAAGAACTTAAAGGAGGGCCTAAACTCTCCCGTTATGCTGGTCAAGCAATTGCAGAATATGTTGGTCGTGAATCTAGAAAATTGGGGCTAAAATCAGTTGTGATGAGGGTGAAAGGCTTTACCTTTTTTAAGAAGAAAAGGCAGGCAATCATGAGTTGGAGAGATGGATTTACTGATTCTAGAAGTGATCGAAATCCGATTGTCTACATTGAAGATACTACAAGACGTGCTCACAATGGTTGCCGACTCCCAAAGCAACGCCGTGTCTAG

mRNA sequence

ATGTCCTCCCTCCACCGATCAGATCTCACTGGATCCGTTCAACTAGACAGCCGGGTCTCAGGGTGTCTCGGCATTTCGCAAGGTGATTCTGCGAATGTTGGTCGGGAGATTGTTGGACGTGGTTGGAAAGCCTTGGGAGCTCAGGGTTCTTGTTGGGGTTTGGCGCGTTCAAATGAAAGTGTCTCCGTTCCTTATTCTATTAGCTCTAGATGTTATGGACAGTACAATAACTGGCCAAATGCAGATACAGGAAGAAATCTTAAGTCTATGAGTTTTGTTAAGGGAATTTTAGAGGAAGATGGAAGAGATTTTACAGGTAGTTCTCGGTTCCCTAGACCACCCAATATGGAACACAATGCTGATATTGTTCATGTAAAGCTGATGCGTAACAATACATTTATCACTGTTACGGATTACAAGGGAAATACAAAGCTCAAGGCCTCTGCTGGTCGTCTTGAAGAACTTAAAGGAGGGCCTAAACTCTCCCGTTATGCTGGTCAAGCAATTGCAGAATATGTTGGTCGTGAATCTAGAAAATTGGGGCTAAAATCAGTTGTGATGAGGGTGAAAGGCTTTACCTTTTTTAAGAAGAAAAGGCAGGCAATCATGAGTTGGAGAGATGGATTTACTGATTCTAGAAGTGATCGAAATCCGATTGTCTACATTGAAGATACTACAAGACGTGCTCACAATGGTTGCCGACTCCCAAAGCAACGCCGTGTCTAG

Coding sequence (CDS)

ATGTCCTCCCTCCACCGATCAGATCTCACTGGATCCGTTCAACTAGACAGCCGGGTCTCAGGGTGTCTCGGCATTTCGCAAGGTGATTCTGCGAATGTTGGTCGGGAGATTGTTGGACGTGGTTGGAAAGCCTTGGGAGCTCAGGGTTCTTGTTGGGGTTTGGCGCGTTCAAATGAAAGTGTCTCCGTTCCTTATTCTATTAGCTCTAGATGTTATGGACAGTACAATAACTGGCCAAATGCAGATACAGGAAGAAATCTTAAGTCTATGAGTTTTGTTAAGGGAATTTTAGAGGAAGATGGAAGAGATTTTACAGGTAGTTCTCGGTTCCCTAGACCACCCAATATGGAACACAATGCTGATATTGTTCATGTAAAGCTGATGCGTAACAATACATTTATCACTGTTACGGATTACAAGGGAAATACAAAGCTCAAGGCCTCTGCTGGTCGTCTTGAAGAACTTAAAGGAGGGCCTAAACTCTCCCGTTATGCTGGTCAAGCAATTGCAGAATATGTTGGTCGTGAATCTAGAAAATTGGGGCTAAAATCAGTTGTGATGAGGGTGAAAGGCTTTACCTTTTTTAAGAAGAAAAGGCAGGCAATCATGAGTTGGAGAGATGGATTTACTGATTCTAGAAGTGATCGAAATCCGATTGTCTACATTGAAGATACTACAAGACGTGCTCACAATGGTTGCCGACTCCCAAAGCAACGCCGTGTCTAG

Protein sequence

MSSLHRSDLTGSVQLDSRVSGCLGISQGDSANVGREIVGRGWKALGAQGSCWGLARSNESVSVPYSISSRCYGQYNNWPNADTGRNLKSMSFVKGILEEDGRDFTGSSRFPRPPNMEHNADIVHVKLMRNNTFITVTDYKGNTKLKASAGRLEELKGGPKLSRYAGQAIAEYVGRESRKLGLKSVVMRVKGFTFFKKKRQAIMSWRDGFTDSRSDRNPIVYIEDTTRRAHNGCRLPKQRRV

Homology

[Close]

BLAST of Cla97C10G192400.1 vs. NCBI nr
Match: XP_022999735.1 (probable ribosomal protein S11, mitochondrial [Cucurbita maxima])

HSP 1 Score: 412.1 bits (1058), Expect = 1.3e-111
Identity = 202/241 (83.82%), Postives = 220/241 (91.29%), Query Frame = 0


Query: 1   MSSLHRSDLTGSVQLDSRVSGCLGISQGDSANVGREIVGRGWKALGAQGSCWGLARSNES 60
           + S H SDL+GSVQLD + SGC+ + +GDS NVGREIVGR WKALGAQG CWGLARS+E+
Sbjct: 46  LHSSHGSDLSGSVQLDRQDSGCVDLPRGDSVNVGREIVGRAWKALGAQGPCWGLARSSEN 105

Query: 61  VSVPYSISSRCYGQYNNWPNADTGRNLKSMSFVKGILEEDGRDFTGSSRFPRPPNMEHNA 120
           VSVPYS SSRCY  Y+  PNADTGRN KSM+FV+GILEEDG +F GSS+FPRPPNMEHNA
Sbjct: 106 VSVPYSSSSRCYVHYDGPPNADTGRNFKSMNFVRGILEEDGMNFMGSSQFPRPPNMEHNA 165

Query: 121 DIVHVKLMRNNTFITVTDYKGNTKLKASAGRLEELKGGPKLSRYAGQAIAEYVGRESRKL 180
           DIVHVKLMRNNTFITVTD KGNTKLKASAGRLEELKGGPKLSRYA +A AEYVGRESRKL
Sbjct: 166 DIVHVKLMRNNTFITVTDNKGNTKLKASAGRLEELKGGPKLSRYAAEATAEYVGRESRKL 225

Query: 181 GLKSVVMRVKGFTFFKKKRQAIMSWRDGFTDSRSDRNPIVYIEDTTRRAHNGCRLPKQRR 240
           GLKSVVMRVKGFT+FKKK+QAI+SWRDGFTDSRSD+NPIVYIEDTTRRAHNGCRLPKQRR
Sbjct: 226 GLKSVVMRVKGFTYFKKKKQAILSWRDGFTDSRSDQNPIVYIEDTTRRAHNGCRLPKQRR 285

Query: 241 V 242
           V
Sbjct: 286 V 286

[Close]

BLAST of Cla97C10G192400.1 vs. NCBI nr
Match: XP_022942058.1 (probable ribosomal protein S11, mitochondrial [Cucurbita moschata])

HSP 1 Score: 407.1 bits (1045), Expect = 4.0e-110
Identity = 200/244 (81.97%), Postives = 221/244 (90.57%), Query Frame = 0


Query: 1   MSSL---HRSDLTGSVQLDSRVSGCLGISQGDSANVGREIVGRGWKALGAQGSCWGLARS 60
           MSSL   H S+++GSVQLD + SGC+ + +GDS NVGREIVGR WKALGAQG CWGLARS
Sbjct: 43  MSSLHFSHGSEISGSVQLDRQDSGCVNLPRGDSVNVGREIVGRAWKALGAQGPCWGLARS 102

Query: 61  NESVSVPYSISSRCYGQYNNWPNADTGRNLKSMSFVKGILEEDGRDFTGSSRFPRPPNME 120
           +E+VSVPYS SSRCY  Y+  PNADTGRN KSM+FV+GILEEDG DF GSS+FPRPPNME
Sbjct: 103 SENVSVPYSSSSRCYVHYDGRPNADTGRNFKSMNFVRGILEEDGMDFMGSSQFPRPPNME 162

Query: 121 HNADIVHVKLMRNNTFITVTDYKGNTKLKASAGRLEELKGGPKLSRYAGQAIAEYVGRES 180
           HNADIVHVKLMRNNTFITVTD KGNTKLKAS+GRLEELKGGPKLSRYA +A AEYVGRES
Sbjct: 163 HNADIVHVKLMRNNTFITVTDNKGNTKLKASSGRLEELKGGPKLSRYAAEATAEYVGRES 222

Query: 181 RKLGLKSVVMRVKGFTFFKKKRQAIMSWRDGFTDSRSDRNPIVYIEDTTRRAHNGCRLPK 240
           +KLGLKSVVMRVKGFT+FKKK+QAI+SWRDGFTDS+ D+NPIVYIEDTTRRAHNGCRLPK
Sbjct: 223 KKLGLKSVVMRVKGFTYFKKKKQAILSWRDGFTDSKRDQNPIVYIEDTTRRAHNGCRLPK 282

Query: 241 QRRV 242
           QRRV
Sbjct: 283 QRRV 286

[Close]

BLAST of Cla97C10G192400.1 vs. NCBI nr
Match: XP_023526167.1 (probable ribosomal protein S11, mitochondrial [Cucurbita pepo subsp. pepo])

HSP 1 Score: 396.4 bits (1017), Expect = 7.1e-107
Identity = 196/244 (80.33%), Postives = 218/244 (89.34%), Query Frame = 0


Query: 1   MSSLH---RSDLTGSVQLDSRVSGCLGISQGDSANVGREIVGRGWKALGAQGSCWGLARS 60
           MSSLH    S+++GSVQ+D + SGC+ + +GDS NVGREIVGR  K LGAQG CWGLARS
Sbjct: 43  MSSLHFSRGSEISGSVQIDRQDSGCVDLPRGDSVNVGREIVGRAGKGLGAQGPCWGLARS 102

Query: 61  NESVSVPYSISSRCYGQYNNWPNADTGRNLKSMSFVKGILEEDGRDFTGSSRFPRPPNME 120
           +E+VSVPYS SSRCY  Y+  PNADTGRN KSM+FV+GILEED  DF GSS+FPRPPNME
Sbjct: 103 SENVSVPYSSSSRCYVHYDGRPNADTGRNFKSMNFVRGILEEDRMDFMGSSQFPRPPNME 162

Query: 121 HNADIVHVKLMRNNTFITVTDYKGNTKLKASAGRLEELKGGPKLSRYAGQAIAEYVGRES 180
           HNADIVHVKLMRNNTFITVTD KGNTKLKAS+GRLEELKGGPKLSRYA +A AEYVGRES
Sbjct: 163 HNADIVHVKLMRNNTFITVTDNKGNTKLKASSGRLEELKGGPKLSRYAAEATAEYVGRES 222

Query: 181 RKLGLKSVVMRVKGFTFFKKKRQAIMSWRDGFTDSRSDRNPIVYIEDTTRRAHNGCRLPK 240
           +KLGLKSVVMRVKGFT+FKKK+QAI+SWRDGFTDS+ D+NPIVYIEDTTRRAHNGCRLPK
Sbjct: 223 KKLGLKSVVMRVKGFTYFKKKKQAILSWRDGFTDSKRDQNPIVYIEDTTRRAHNGCRLPK 282

Query: 241 QRRV 242
           QRRV
Sbjct: 283 QRRV 286

[Close]

BLAST of Cla97C10G192400.1 vs. NCBI nr
Match: XP_022141322.1 (probable ribosomal protein S11, mitochondrial [Momordica charantia])

HSP 1 Score: 386.3 bits (991), Expect = 7.4e-104
Identity = 198/244 (81.15%), Postives = 216/244 (88.52%), Query Frame = 0


Query: 1   MSSL--HRSDLTGSVQLDSRVSGCLGISQGDSANVGREI-VGRGWKALGAQGSCWGLARS 60
           M+SL  HRSDLTGSVQLD++VSGCL + QGDS +VGR+I VGR WKALG  G      RS
Sbjct: 43  MASLHPHRSDLTGSVQLDNQVSGCLDLPQGDSMDVGRQIKVGRAWKALGVMG------RS 102

Query: 61  NESVSVPYSISSRCYGQYNNWPNADTGRNLKSMSFVKGILEEDGRDFTGSSRFPRPPNME 120
            E+VSVPY+++S+CY  Y++  NADTGRN KSM+FV+GILEEDGRDF   S FPRPPNME
Sbjct: 103 RENVSVPYAVNSKCYVHYDSRINADTGRNFKSMNFVRGILEEDGRDFMAGSPFPRPPNME 162

Query: 121 HNADIVHVKLMRNNTFITVTDYKGNTKLKASAGRLEELKGGPKLSRYAGQAIAEYVGRES 180
            NADIVHVKLMRNNTFITVTD KGNTKLKASAGRLEELKGGPKLSRYA +AIAEYVGRES
Sbjct: 163 SNADIVHVKLMRNNTFITVTDNKGNTKLKASAGRLEELKGGPKLSRYAAEAIAEYVGRES 222

Query: 181 RKLGLKSVVMRVKGFTFFKKKRQAIMSWRDGFTDSRSDRNPIVYIEDTTRRAHNGCRLPK 240
           RKLGLKSVVMRVKGFT+FKKKRQAIMSWRDGFTDSRSD+NPIVYIEDTTRRAHNGCRLPK
Sbjct: 223 RKLGLKSVVMRVKGFTYFKKKRQAIMSWRDGFTDSRSDQNPIVYIEDTTRRAHNGCRLPK 280

Query: 241 QRRV 242
           QRRV
Sbjct: 283 QRRV 280

[Close]

BLAST of Cla97C10G192400.1 vs. NCBI nr
Match: XP_008455641.1 (PREDICTED: probable ribosomal protein S11, mitochondrial [Cucumis melo])

HSP 1 Score: 353.6 bits (906), Expect = 5.3e-94
Identity = 181/237 (76.37%), Postives = 203/237 (85.65%), Query Frame = 0


Query: 7   SDLTGSVQLDSRVSGCLGISQGDSANVGREIVGRGWKALGAQGSCWGLARSNESVSVPYS 66
           S LTGS+Q  +  SG          +VGREIVGRGWKA+G QG  WGLARS ESVSVPYS
Sbjct: 49  SHLTGSLQPHNHFSG----------SVGREIVGRGWKAMGVQGPSWGLARSTESVSVPYS 108

Query: 67  ISSRCYGQYNNWPN-ADTGRNLKSMSFVKGILEEDGRDFTGSSRFPRPPNMEHNADIVHV 126
           ISSRCYG+Y+N PN  DTGRNLK+++FV+GILEED + F+   ++ RP NMEHNADIVH+
Sbjct: 109 ISSRCYGEYDNRPNPPDTGRNLKTLNFVRGILEEDEKVFSDVPQYLRPTNMEHNADIVHI 168

Query: 127 KLMRNNTFITVTDYKGNTKLKASAGRLEELK-GGPKLSRYAGQAIAEYVGRESRKLGLKS 186
           KLMRNN F+TVTD KGNTKLKASAGRLEELK GG KLSRY+G +IAEYVGRESRKLGLKS
Sbjct: 169 KLMRNNAFVTVTDNKGNTKLKASAGRLEELKGGGAKLSRYSGDSIAEYVGRESRKLGLKS 228

Query: 187 VVMRVKGFTFFKKKRQAIMSWRDGFTDSRSDRNPIVYIEDTTRRAHNGCRLPKQRRV 242
           VVMRVKGFTFFKKK+QAI+SWRDGFTDSRSD+NPIVYIEDTTRRAHNGCRLPK+RRV
Sbjct: 229 VVMRVKGFTFFKKKKQAILSWRDGFTDSRSDQNPIVYIEDTTRRAHNGCRLPKKRRV 275

[Close]

BLAST of Cla97C10G192400.1 vs. TrEMBL
Match: tr|A0A1S3C2M0|A0A1S3C2M0_CUCME (probable ribosomal protein S11, mitochondrial OS=Cucumis melo OX=3656 GN=LOC103495763 PE=3 SV=1)

HSP 1 Score: 353.6 bits (906), Expect = 3.5e-94
Identity = 181/237 (76.37%), Postives = 203/237 (85.65%), Query Frame = 0


Query: 7   SDLTGSVQLDSRVSGCLGISQGDSANVGREIVGRGWKALGAQGSCWGLARSNESVSVPYS 66
           S LTGS+Q  +  SG          +VGREIVGRGWKA+G QG  WGLARS ESVSVPYS
Sbjct: 49  SHLTGSLQPHNHFSG----------SVGREIVGRGWKAMGVQGPSWGLARSTESVSVPYS 108

Query: 67  ISSRCYGQYNNWPN-ADTGRNLKSMSFVKGILEEDGRDFTGSSRFPRPPNMEHNADIVHV 126
           ISSRCYG+Y+N PN  DTGRNLK+++FV+GILEED + F+   ++ RP NMEHNADIVH+
Sbjct: 109 ISSRCYGEYDNRPNPPDTGRNLKTLNFVRGILEEDEKVFSDVPQYLRPTNMEHNADIVHI 168

Query: 127 KLMRNNTFITVTDYKGNTKLKASAGRLEELK-GGPKLSRYAGQAIAEYVGRESRKLGLKS 186
           KLMRNN F+TVTD KGNTKLKASAGRLEELK GG KLSRY+G +IAEYVGRESRKLGLKS
Sbjct: 169 KLMRNNAFVTVTDNKGNTKLKASAGRLEELKGGGAKLSRYSGDSIAEYVGRESRKLGLKS 228

Query: 187 VVMRVKGFTFFKKKRQAIMSWRDGFTDSRSDRNPIVYIEDTTRRAHNGCRLPKQRRV 242
           VVMRVKGFTFFKKK+QAI+SWRDGFTDSRSD+NPIVYIEDTTRRAHNGCRLPK+RRV
Sbjct: 229 VVMRVKGFTFFKKKKQAILSWRDGFTDSRSDQNPIVYIEDTTRRAHNGCRLPKKRRV 275

[Close]

BLAST of Cla97C10G192400.1 vs. TrEMBL
Match: tr|A0A0A0KVQ8|A0A0A0KVQ8_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G107470 PE=3 SV=1)

HSP 1 Score: 352.4 bits (903), Expect = 7.8e-94
Identity = 180/242 (74.38%), Postives = 204/242 (84.30%), Query Frame = 0


Query: 1   MSSLHRSDLTGSVQLDSRVSGCLGISQGDSANVGREIVGRGWKALGAQGSCWGLARSNES 60
           MSSLHRSDLTGS+Q  ++ SGCL     DSANVGREIVGRGWK++G QG           
Sbjct: 43  MSSLHRSDLTGSLQPHNQFSGCL----RDSANVGREIVGRGWKSMGVQGPSSXXXXXXXX 102

Query: 61  VSVPYSISSRCYGQYNNWPN-ADTGRNLKSMSFVKGILEEDGRDFTGSSRFPRPPNMEHN 120
            S+PYSISSRCYG+Y+N PN  DTGRNLK M+FV+GILEE+ R F G+ +F RP NMEHN
Sbjct: 103 XSIPYSISSRCYGEYDNRPNPPDTGRNLKPMNFVRGILEEEERGFFGTPQFLRPSNMEHN 162

Query: 121 ADIVHVKLMRNNTFITVTDYKGNTKLKASAGRLEELKGGPKLSRYAGQAIAEYVGRESRK 180
           ADIVH+KLMRNN+F+TVTD KGNTKLKASAGRLE   GG KLSRY+  +IAEYVGRESRK
Sbjct: 163 ADIVHIKLMRNNSFVTVTDNKGNTKLKASAGRLE---GGAKLSRYSADSIAEYVGRESRK 222

Query: 181 LGLKSVVMRVKGFTFFKKKRQAIMSWRDGFTDSRSDRNPIVYIEDTTRRAHNGCRLPKQR 240
           LGLKSVVMRVKGFTFFKKK+QAI+SWRDGFTDSR+D+NPIVY+EDTTRRAHNGCRLPK+R
Sbjct: 223 LGLKSVVMRVKGFTFFKKKKQAILSWRDGFTDSRTDQNPIVYVEDTTRRAHNGCRLPKKR 277

Query: 241 RV 242
           RV
Sbjct: 283 RV 277

[Close]

BLAST of Cla97C10G192400.1 vs. TrEMBL
Match: tr|A0A2P4M3Q9|A0A2P4M3Q9_QUESU (Putative ribosomal protein s11, mitochondrial OS=Quercus suber OX=58331 GN=CFP56_41588 PE=3 SV=1)

HSP 1 Score: 256.9 bits (655), Expect = 4.5e-65
Identity = 138/237 (58.23%), Postives = 176/237 (74.26%), Query Frame = 0


Query: 7   SDLTGSVQLDSRVSGCLGISQGDSANVGREIVGRGWKALGAQGSCWGL--ARSNESVSVP 66
           S LT    L    +GC+    G S +   E + RG   LG  G  +GL   + N SVS P
Sbjct: 35  SHLTAPTSLS---TGCVESIHGGSHS--SENIARG-GLLGTSGLNFGLRNVKENVSVSPP 94

Query: 67  YSISSRCYGQYNNWPNADTGRNLKSMSFVKGILEEDGRDFTGSSRFPRPPNMEHNADIVH 126
            ++S R Y   ++  + +T RN +SM+FV+GI+EEDGRD  G+S+FPR  N+E NADIVH
Sbjct: 95  RALSFRSYIHSSSQKDFETERNSRSMNFVRGIIEEDGRDIMGTSQFPR-YNVEQNADIVH 154

Query: 127 VKLMRNNTFITVTDYKGNTKLKASAGRLEELKGGPKLSRYAGQAIAEYVGRESRKLGLKS 186
           +K++RNNTF+TVTD KGNTK +AS G + E+KGG K+SRYA +A AE+VGR SR LGLKS
Sbjct: 155 IKMLRNNTFVTVTDSKGNTKCRASVGCVPEMKGGAKMSRYAAEATAEHVGRMSRNLGLKS 214

Query: 187 VVMRVKGFTFFKKKRQAIMSWRDGFTDSRSDRNPIVYIEDTTRRAHNGCRLPKQRRV 242
           VVM+V+GFT+FKKKRQAIMSWR+GFT+SR DRNP+VYIEDTT+R HNGCRLPK+RR+
Sbjct: 215 VVMKVRGFTYFKKKRQAIMSWREGFTNSRGDRNPVVYIEDTTQRPHNGCRLPKKRRI 264

[Close]

BLAST of Cla97C10G192400.1 vs. TrEMBL
Match: tr|A0A2P4M442|A0A2P4M442_QUESU (Putative ribosomal protein s11, mitochondrial OS=Quercus suber OX=58331 GN=CFP56_41588 PE=3 SV=1)

HSP 1 Score: 256.5 bits (654), Expect = 5.8e-65
Identity = 134/223 (60.09%), Postives = 171/223 (76.68%), Query Frame = 0


Query: 21  GCLGISQGDSANVGREIVGRGWKALGAQGSCWGL--ARSNESVSVPYSISSRCYGQYNNW 80
           GC+    G S +   E + RG   LG  G  +GL   + N SVS P ++S R Y   ++ 
Sbjct: 16  GCVESIHGGSHS--SENIARG-GLLGTSGLNFGLRNVKENVSVSPPRALSFRSYIHSSSQ 75

Query: 81  PNADTGRNLKSMSFVKGILEEDGRDFTGSSRFPRPPNMEHNADIVHVKLMRNNTFITVTD 140
            + +T RN +SM+FV+GI+EEDGRD  G+S+FPR  N+E NADIVH+K++RNNTF+TVTD
Sbjct: 76  KDFETERNSRSMNFVRGIIEEDGRDIMGTSQFPR-YNVEQNADIVHIKMLRNNTFVTVTD 135

Query: 141 YKGNTKLKASAGRLEELKGGPKLSRYAGQAIAEYVGRESRKLGLKSVVMRVKGFTFFKKK 200
            KGNTK +AS G + E+KGG K+SRYA +A AE+VGR SR LGLKSVVM+V+GFT+FKKK
Sbjct: 136 SKGNTKCRASVGCVPEMKGGAKMSRYAAEATAEHVGRMSRNLGLKSVVMKVRGFTYFKKK 195

Query: 201 RQAIMSWRDGFTDSRSDRNPIVYIEDTTRRAHNGCRLPKQRRV 242
           RQAIMSWR+GFT+SR DRNP+VYIEDTT+R HNGCRLPK+RR+
Sbjct: 196 RQAIMSWREGFTNSRGDRNPVVYIEDTTQRPHNGCRLPKKRRI 234

[Close]

BLAST of Cla97C10G192400.1 vs. TrEMBL
Match: tr|A0A2N9IU01|A0A2N9IU01_FAGSY (Uncharacterized protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS56214 PE=3 SV=1)

HSP 1 Score: 248.4 bits (633), Expect = 1.6e-62
Identity = 125/200 (62.50%), Postives = 157/200 (78.50%), Query Frame = 0


Query: 43  KALGAQGSCWGLARSNES-VSVPYSISSRCYGQYNNWPNADTGRNLKSMSFVKGILEEDG 102
           + +G  G     +R   S  S P+++S R Y   ++  + + GRN KSM+FV+GI+E DG
Sbjct: 3   RIVGFAGCVESFSRGGLSGTSPPFALSFRSYIHSSSQKDIENGRNSKSMNFVRGIIENDG 62

Query: 103 RDFTGSSRFPRPPNMEHNADIVHVKLMRNNTFITVTDYKGNTKLKASAGRLEELKGGPKL 162
               G S+FPR  N+E NADIVH+KL+RNNTF+TVTD KGNTK +ASAG L+ELKGG KL
Sbjct: 63  WGIRGGSQFPR-YNVEQNADIVHIKLLRNNTFVTVTDSKGNTKCRASAGCLQELKGGAKL 122

Query: 163 SRYAGQAIAEYVGRESRKLGLKSVVMRVKGFTFFKKKRQAIMSWRDGFTDSRSDRNPIVY 222
           SRYA +A +E+VGR SR LGLKSVVM+VKGFT+FKKKRQAIMSWR+GFT+SR D+NP+VY
Sbjct: 123 SRYAAEATSEHVGRMSRNLGLKSVVMKVKGFTYFKKKRQAIMSWREGFTNSRGDKNPVVY 182

Query: 223 IEDTTRRAHNGCRLPKQRRV 242
           IEDTT+R HNGCRLPK+RR+
Sbjct: 183 IEDTTQRPHNGCRLPKKRRI 201

[Close]

BLAST of Cla97C10G192400.1 vs. Swiss-Prot
Match: sp|Q8VZT8|RT11_ARATH (Probable ribosomal protein S11, mitochondrial OS=Arabidopsis thaliana OX=3702 GN=NFD3 PE=2 SV=1)

HSP 1 Score: 197.2 bits (500), Expect = 2.1e-49
Identity = 91/162 (56.17%), Postives = 127/162 (78.40%), Query Frame = 0


Query: 80  NADTGRNLKSMSFVKGILEEDGRDFTGSSRFPRPPNMEHNADIVHVKLMRNNTFITVTDY 139
           N+ +G     + FV+ ++E++GR   G     + PN+E NADI+H+K++RNNTF+TVTD 
Sbjct: 153 NSRSGGKSSDLDFVREVIEDEGRRTAGIFSHFQRPNLETNADIIHIKMLRNNTFVTVTDS 212

Query: 140 KGNTKLKASAGRLEELKGGPKLSRYAGQAIAEYVGRESRKLGLKSVVMRVKGFTFFKKKR 199
           KGN K KA++G L +LKGG K++ Y   A AE +GR ++ +GLKSVV++V GFT F KK+
Sbjct: 213 KGNVKCKATSGSLPDLKGGRKMTNYTADATAENIGRRAKAMGLKSVVVKVNGFTHFGKKK 272

Query: 200 QAIMSWRDGFTDSRSDRNPIVYIEDTTRRAHNGCRLPKQRRV 242
           +AI+++RDGFT+SRSD+NPIVYIEDTTR+AHNGCRLP++RRV
Sbjct: 273 KAIIAFRDGFTNSRSDQNPIVYIEDTTRKAHNGCRLPRKRRV 314

[Close]

BLAST of Cla97C10G192400.1 vs. Swiss-Prot
Match: sp|P46746|RT11_PROWI (Ribosomal protein S11, mitochondrial OS=Prototheca wickerhamii OX=3111 GN=RPS11 PE=3 SV=1)

HSP 1 Score: 71.2 bits (173), Expect = 1.7e-11
Identity = 44/126 (34.92%), Postives = 67/126 (53.17%), Query Frame = 0


Query: 116 MEHNADIVHVKLMRNNTFITVTDYKGNTKLKASAGRLEELKGGPKLSRYAGQAIAEYVGR 175
           +E  + IVH++   NNT IT+TD +GNT+   SAG L   K   K + YA  A AE +  
Sbjct: 13  IEKKSGIVHIQSTTNNTLITLTDLEGNTQFFVSAGTL-GFKNSRKSTVYASGAAAEALAS 72

Query: 176 ESRKLGLKSVVMRVKGFTFFKKKRQAIMSWRDGFTDSRSDRNPIVYIEDTTRRAHNGCRL 235
           ++   G +++++++KG  + KK               +     I  I++ T  AHNGCR 
Sbjct: 73  KAFNEGYRTIIVKIKGLGYGKK---------SAIRGLQKSNLVIKQIQEVTPIAHNGCRP 128

Query: 236 PKQRRV 242
           PK+RRV
Sbjct: 133 PKKRRV 128

[Close]

BLAST of Cla97C10G192400.1 vs. Swiss-Prot
Match: sp|Q0BYD7|RS11_HYPNA (30S ribosomal protein S11 OS=Hyphomonas neptunium (strain ATCC 15444) OX=228405 GN=rpsK PE=3 SV=1)

HSP 1 Score: 68.2 bits (165), Expect = 1.5e-10
Identity = 47/135 (34.81%), Postives = 71/135 (52.59%), Query Frame = 0


Query: 107 SSRFPRPPNMEHNADIVHVKLMRNNTFITVTDYKGNTKLKASAGRLEELKGGPKLSRYAG 166
           ++R  R       + IVHV    NNT +T+TD +GNT   +S+G +   KG  K + YA 
Sbjct: 5   ATRIRRRERKNITSGIVHVNSSFNNTMVTITDAQGNTISWSSSG-VMNFKGSRKSTPYAA 64

Query: 167 QAIAEYVGRESRKLGLKSVVMRVKGFTFFKKKRQAIMSWRDGFTDSRSDRNPIVYIEDTT 226
           Q  AE   +++++ GL++V +RV+G    ++     +    G T        +  I DTT
Sbjct: 65  QMAAEDAAKKAKEHGLQTVEVRVRGPGSGRESALRALQ-AAGLT--------VTAINDTT 124

Query: 227 RRAHNGCRLPKQRRV 242
              HNGCR PK+RRV
Sbjct: 125 PIPHNGCRPPKRRRV 129

[Close]

BLAST of Cla97C10G192400.1 vs. Swiss-Prot
Match: sp|A5D5E6|RS11_PELTS (30S ribosomal protein S11 OS=Pelotomaculum thermopropionicum (strain DSM 13744 / JCM 10971 / SI) OX=370438 GN=rpsK PE=3 SV=1)

HSP 1 Score: 68.2 bits (165), Expect = 1.5e-10
Identity = 47/120 (39.17%), Postives = 65/120 (54.17%), Query Frame = 0


Query: 122 IVHVKLMRNNTFITVTDYKGNTKLKASAGRLEELKGGPKLSRYAGQAIAEYVGRESRKLG 181
           + H+K   NNT +T+TD KGNT   +SAG++   KG  K + +A Q  AE   RE+ + G
Sbjct: 20  VAHIKSTFNNTIVTITDTKGNTISWSSAGQV-GFKGSRKSTPFAAQMAAESAAREAMEHG 79

Query: 182 LKSVVMRVKGFTFFKKKRQAIMSWRDGFTDSRSDRNPIVYIEDTTRRAHNGCRLPKQRRV 241
           LK V + VKG      +  AI S +    +       +  I+D T   HNGCR PK+RRV
Sbjct: 80  LKEVEVMVKGPG--AGREAAIRSLQAAGLE-------VNLIKDVTPIPHNGCRPPKRRRV 129

[Close]

BLAST of Cla97C10G192400.1 vs. Swiss-Prot
Match: sp|A5CCJ0|RS11_ORITB (30S ribosomal protein S11 OS=Orientia tsutsugamushi (strain Boryong) OX=357244 GN=rpsK PE=3 SV=1)

HSP 1 Score: 67.4 bits (163), Expect = 2.5e-10
Identity = 46/121 (38.02%), Postives = 67/121 (55.37%), Query Frame = 0


Query: 122 IVHVKLMRNNTFITVTDYKGNTKLKASAGRLEELKGGPKLSRYAGQAIAEYVGRESRKLG 181
           IV++K   NNT +T TD +GN     SAG +   KG  K + YA Q I E V   +++ G
Sbjct: 17  IVYIKSTFNNTIVTFTDMQGNAIAALSAGAI-GFKGAKKATPYAAQVIVEKVSEVAKEHG 76

Query: 182 LKSVVMRVKGFTFFKKKRQAIMSWRDGFTDSRSDRNPIV-YIEDTTRRAHNGCRLPKQRR 241
           +K++ +R++G            S R+    +  ++N IV  I DT+  AHNGCR PK+RR
Sbjct: 77  IKTLSIRIQG----------AGSQRESALRAIFNQNFIVTSITDTSPVAHNGCRPPKKRR 126

[Close]

BLAST of Cla97C10G192400.1 vs. TAIR10
Match: AT1G31817.1 (Ribosomal L18p/L5e family protein)

HSP 1 Score: 197.2 bits (500), Expect = 1.2e-50
Identity = 91/162 (56.17%), Postives = 127/162 (78.40%), Query Frame = 0


Query: 80  NADTGRNLKSMSFVKGILEEDGRDFTGSSRFPRPPNMEHNADIVHVKLMRNNTFITVTDY 139
           N+ +G     + FV+ ++E++GR   G     + PN+E NADI+H+K++RNNTF+TVTD 
Sbjct: 153 NSRSGGKSSDLDFVREVIEDEGRRTAGIFSHFQRPNLETNADIIHIKMLRNNTFVTVTDS 212

Query: 140 KGNTKLKASAGRLEELKGGPKLSRYAGQAIAEYVGRESRKLGLKSVVMRVKGFTFFKKKR 199
           KGN K KA++G L +LKGG K++ Y   A AE +GR ++ +GLKSVV++V GFT F KK+
Sbjct: 213 KGNVKCKATSGSLPDLKGGRKMTNYTADATAENIGRRAKAMGLKSVVVKVNGFTHFGKKK 272

Query: 200 QAIMSWRDGFTDSRSDRNPIVYIEDTTRRAHNGCRLPKQRRV 242
           +AI+++RDGFT+SRSD+NPIVYIEDTTR+AHNGCRLP++RRV
Sbjct: 273 KAIIAFRDGFTNSRSDQNPIVYIEDTTRKAHNGCRLPRKRRV 314

[Close]

BLAST of Cla97C10G192400.1 vs. TAIR10
Match: ATCG00750.1 (ribosomal protein S11)

HSP 1 Score: 48.5 bits (114), Expect = 6.6e-06
Identity = 36/120 (30.00%), Postives = 56/120 (46.67%), Query Frame = 0


Query: 122 IVHVKLMRNNTFITVTDYKGNTKLKASAGRLEELKGGPKLSRYAGQAIAEYVGRESRKLG 181
           ++HV+   NNT +TVTD +G     +SAG     +G  + + +A Q  A    R     G
Sbjct: 29  VIHVQASFNNTIVTVTDVRGRVISWSSAGTC-GFRGTRRGTPFAAQTAAGNAIRAVVDQG 88

Query: 182 LKSVVMRVKGFTFFKKKRQAIMSWRDGFTDSRSDRNPIVYIEDTTRRAHNGCRLPKQRRV 241
           ++   +R+KG    +      +  R G          + ++ D T   HNGCR PK+RRV
Sbjct: 89  MQRAEVRIKGPGLGRDAALRAIR-RSGIL--------LSFVRDVTPMPHNGCRPPKKRRV 138

The following BLAST results are available for this feature:

BLAST of Cla97C10G192400.1 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022999735.1	1.3e-111	83.82	probable ribosomal protein S11, mitochondrial [Cucurbita maxima]	[more]
XP_022942058.1	4.0e-110	81.97	probable ribosomal protein S11, mitochondrial [Cucurbita moschata]	[more]
XP_023526167.1	7.1e-107	80.33	probable ribosomal protein S11, mitochondrial [Cucurbita pepo subsp. pepo]	[more]
XP_022141322.1	7.4e-104	81.15	probable ribosomal protein S11, mitochondrial [Momordica charantia]	[more]
XP_008455641.1	5.3e-94	76.37	PREDICTED: probable ribosomal protein S11, mitochondrial [Cucumis melo]	[more]

BLAST of Cla97C10G192400.1 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A1S3C2M0\|A0A1S3C2M0_CUCME	3.5e-94	76.37	probable ribosomal protein S11, mitochondrial OS=Cucumis melo OX=3656 GN=LOC1034...	[more]
tr\|A0A0A0KVQ8\|A0A0A0KVQ8_CUCSA	7.8e-94	74.38	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G107470 PE=3 SV=1	[more]
tr\|A0A2P4M3Q9\|A0A2P4M3Q9_QUESU	4.5e-65	58.23	Putative ribosomal protein s11, mitochondrial OS=Quercus suber OX=58331 GN=CFP56...	[more]
tr\|A0A2P4M442\|A0A2P4M442_QUESU	5.8e-65	60.09	Putative ribosomal protein s11, mitochondrial OS=Quercus suber OX=58331 GN=CFP56...	[more]
tr\|A0A2N9IU01\|A0A2N9IU01_FAGSY	1.6e-62	62.50	Uncharacterized protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS56214 PE=3 SV=1	[more]

BLAST of Cla97C10G192400.1 vs. Swiss-Prot


Match Name	E-value	Identity	Description
sp\|Q8VZT8\|RT11_ARATH	2.1e-49	56.17	Probable ribosomal protein S11, mitochondrial OS=Arabidopsis thaliana OX=3702 GN...	[more]
sp\|P46746\|RT11_PROWI	1.7e-11	34.92	Ribosomal protein S11, mitochondrial OS=Prototheca wickerhamii OX=3111 GN=RPS11 ...	[more]
sp\|Q0BYD7\|RS11_HYPNA	1.5e-10	34.81	30S ribosomal protein S11 OS=Hyphomonas neptunium (strain ATCC 15444) OX=228405 ...	[more]
sp\|A5D5E6\|RS11_PELTS	1.5e-10	39.17	30S ribosomal protein S11 OS=Pelotomaculum thermopropionicum (strain DSM 13744 /...	[more]
sp\|A5CCJ0\|RS11_ORITB	2.5e-10	38.02	30S ribosomal protein S11 OS=Orientia tsutsugamushi (strain Boryong) OX=357244 G...	[more]

BLAST of Cla97C10G192400.1 vs. TAIR10


Match Name	E-value	Identity	Description
AT1G31817.1	1.2e-50	56.17	Ribosomal L18p/L5e family protein	[more]
ATCG00750.1	6.6e-06	30.00	ribosomal protein S11	[more]

Annotated Terms

The following terms have been associated with this mRNA:

Vocabulary: **Biological Process**
Term	Definition
GO:0006412	translation

Vocabulary: **Cellular Component**
Term	Definition
GO:0005840	ribosome

Vocabulary: **Molecular Function**
Term	Definition
GO:0003735	structural constituent of ribosome

Vocabulary: **INTERPRO**
Term	Definition
IPR036967	Ribosomal_S11_sf
IPR001971	Ribosomal_S11

GO Annotation

GO Assignments

This mRNA is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006412	translation
cellular_component	GO:0005840	ribosome
molecular_function	GO:0003735	structural constituent of ribosome

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
Cla97C10G192400	Cla97C10G192400	gene

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Cla97C10G192400.1.exon.1	Cla97C10G192400.1.exon.1	exon
Cla97C10G192400.1.exon.2	Cla97C10G192400.1.exon.2	exon

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Cla97C10G192400.1.CDS.1	Cla97C10G192400.1.CDS.1	CDS
Cla97C10G192400.1.CDS.2	Cla97C10G192400.1.CDS.2	CDS

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
Cla97C10G192400.1	Cla97C10G192400.1-protein	polypeptide

InterPro

Analysis Name: InterPro Annotations of watermelon 97103 v2
Date Performed: 2019-05-12


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR001971	Ribosomal protein S11	PFAM	PF00411	Ribosomal_S11	coord: 122..240 e-value: 2.3E-13 score: 50.4
IPR001971	Ribosomal protein S11	PANTHER	PTHR11759	40S RIBOSOMAL PROTEIN S14/30S RIBOSOMAL PROTEIN S11	coord: 71..241
IPR001971	Ribosomal protein S11	HAMAP	MF_01310	Ribosomal_S11	coord: 85..241 score: 15.885
IPR036967	Ribosomal protein S11 superfamily	GENE3D	G3DSA:3.30.420.80		coord: 110..241 e-value: 5.7E-33 score: 115.7
None	No IPR available	PANTHER	PTHR11759:SF8	RIBOSOMAL PROTEIN S11, MITOCHONDRIAL-RELATED	coord: 71..241
None	No IPR available	SUPERFAMILY	SSF53137	Translational machinery components	coord: 120..241