Cla97C08G156560.1 (mRNA) Watermelon (97103) v2 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Cla97C08G156560.1
Type	mRNA
Organism	Citrullus lanatus (Watermelon (97103) v2)
Description	UPF0481 protein At3g47200-like
Location	Cla97Chr08 : 24351080 .. 24351430 (-)
Sequence length	351

Genome Viewer

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDSexon

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGAAAAGAGTGAGATTGAAATGCCTGAAGCAAATGATACAACTCACAATGTGGCAGAAATTAGTGAGGTTGATCAACAACTTTGTGGTAAAATTGTGATATCCATGGAAGAAATGATGAAACAATTGCCTGCTATTAATAGAGAAAGTAGCATCTATCGAGTTCCCAAACAGTTAAGCGAGATGAATCCTAAAGCCTATGCCCCTCAACTCATTTCCATAGGCCCTTTTCATCATGGATGTCAAAAGGATTTTAGAGCCACAGAACAATATAAGCTTCGAGCTCTTATTAACTTTCTACCCGTATCAATAATGACAAGAAGGAATATTCATTGGAGGAGGAGATTGTGA

mRNA sequence

ATGGAAAAGAGTGAGATTGAAATGCCTGAAGCAAATGATACAACTCACAATGTGGCAGAAATTAGTGAGGTTGATCAACAACTTTGTGGTAAAATTGTGATATCCATGGAAGAAATGATGAAACAATTGCCTGCTATTAATAGAGAAAGTAGCATCTATCGAGTTCCCAAACAGTTAAGCGAGATGAATCCTAAAGCCTATGCCCCTCAACTCATTTCCATAGGCCCTTTTCATCATGGATGTCAAAAGGATTTTAGAGCCACAGAACAATATAAGCTTCGAGCTCTTATTAACTTTCTACCCGTATCAATAATGACAAGAAGGAATATTCATTGGAGGAGGAGATTGTGA

Coding sequence (CDS)

ATGGAAAAGAGTGAGATTGAAATGCCTGAAGCAAATGATACAACTCACAATGTGGCAGAAATTAGTGAGGTTGATCAACAACTTTGTGGTAAAATTGTGATATCCATGGAAGAAATGATGAAACAATTGCCTGCTATTAATAGAGAAAGTAGCATCTATCGAGTTCCCAAACAGTTAAGCGAGATGAATCCTAAAGCCTATGCCCCTCAACTCATTTCCATAGGCCCTTTTCATCATGGATGTCAAAAGGATTTTAGAGCCACAGAACAATATAAGCTTCGAGCTCTTATTAACTTTCTACCCGTATCAATAATGACAAGAAGGAATATTCATTGGAGGAGGAGATTGTGA

Protein sequence

MEKSEIEMPEANDTTHNVAEISEVDQQLCGKIVISMEEMMKQLPAINRESSIYRVPKQLSEMNPKAYAPQLISIGPFHHGCQKDFRATEQYKLRALINFLPVSIMTRRNIHWRRRL

Homology

[Close]

BLAST of Cla97C08G156560.1 vs. NCBI nr
Match: XP_016899961.1 (PREDICTED: uncharacterized protein LOC107990712 [Cucumis melo])

HSP 1 Score: 114.4 bits (285), Expect = 2.6e-22
Identity = 60/98 (61.22%), Postives = 75/98 (76.53%), Query Frame = 0


Query: 10  EANDTTHN-VAEISEVDQQLCGKIVISMEEMMKQLPAINRESSIYRVPKQLSEMNPKAYA 69
           EA   ++N + +ISE  Q     + IS+EEM+ Q+ +INR+ SIYRVPKQL +MNP+AY 
Sbjct: 75  EAKSVSNNDMPQISETQQD---NVAISIEEMLNQMHSINRDCSIYRVPKQLRKMNPEAYT 134

Query: 70  PQLISIGPFHH-GCQKDFRATEQYKLRALINFLPVSIM 106
           PQLISIGPFHH  CQ DF+ATEQYKL+AL+NFL V IM
Sbjct: 135 PQLISIGPFHHYRCQNDFKATEQYKLQALVNFLRVLIM 169

[Close]

BLAST of Cla97C08G156560.1 vs. NCBI nr
Match: XP_008445583.2 (PREDICTED: LOW QUALITY PROTEIN: UPF0481 protein At3g47200-like [Cucumis melo])

HSP 1 Score: 112.5 bits (280), Expect = 9.9e-22
Identity = 60/101 (59.41%), Postives = 76/101 (75.25%), Query Frame = 0


Query: 4   SEIEM--PEANDTTHN-VAEISEVDQQLCGKIVISMEEMMKQLPAINRESSIYRVPKQLS 63
           SEI M   EA   ++N + +I E  Q LC  +VIS+++M+ Q+ +IN + SIYR+PKQL 
Sbjct: 15  SEIGMHKVEAESVSNNEMPQIIEAQQDLCDNVVISIQKMLNQMHSINGDCSIYRIPKQLR 74

Query: 64  EMNPKAYAPQLISIGPFHH-GCQKDFRATEQYKLRALINFL 101
           EMNPKAY PQLISIGPFHH   Q DF+ATEQYKL+AL+NFL
Sbjct: 75  EMNPKAYTPQLISIGPFHHYRRQNDFKATEQYKLQALVNFL 115

[Close]

BLAST of Cla97C08G156560.1 vs. NCBI nr
Match: XP_008445584.2 (PREDICTED: UPF0481 protein At3g47200-like [Cucumis melo])

HSP 1 Score: 112.1 bits (279), Expect = 1.3e-21
Identity = 58/101 (57.43%), Postives = 71/101 (70.30%), Query Frame = 0


Query: 1   MEKSEIEMPEANDTTHNVAEISEVDQQLCGKIVISMEEMMKQLPAINRESSIYRVPKQLS 60
           + K E E    ND    + +I E  Q LC  +VIS++ M+ Q+  IN + SIYR+PKQL 
Sbjct: 19  VHKVEAESVSDND----MPQIIEAQQDLCDNVVISIQIMLNQMCPINGDCSIYRIPKQLR 78

Query: 61  EMNPKAYAPQLISIGPFHH-GCQKDFRATEQYKLRALINFL 101
           EMNPKAY PQLISIGPFHH  CQ DF+ TEQYKL+AL+NFL
Sbjct: 79  EMNPKAYTPQLISIGPFHHYRCQNDFKTTEQYKLQALVNFL 115

[Close]

BLAST of Cla97C08G156560.1 vs. NCBI nr
Match: XP_022961891.1 (UPF0481 protein At3g47200-like isoform X1 [Cucurbita moschata])

HSP 1 Score: 111.3 bits (277), Expect = 2.2e-21
Identity = 57/99 (57.58%), Postives = 74/99 (74.75%), Query Frame = 0


Query: 2   EKSEIEMPEANDTTHNVAEISEVDQQLCGKIVISMEEMMKQLPAINRESSIYRVPKQLSE 61
           E SEIE+ + ND ++N+ EISE  +++CG +VIS+++MMK+LP  N E SI+RVPK L E
Sbjct: 78  EISEIEVHQVNDMSYNMEEISEA-ERICGNVVISIKKMMKELPPHNFECSIHRVPKLLRE 137

Query: 62  MNPKAYAPQLISIGPFHHGCQKDFRATEQYKLRALINFL 101
           MN   Y PQ+ISIGPFHH  QK+  A EQYKLR+ I FL
Sbjct: 138 MNKTMYTPQVISIGPFHHRSQKNLIAEEQYKLRSCITFL 175

[Close]

BLAST of Cla97C08G156560.1 vs. NCBI nr
Match: XP_016899969.1 (PREDICTED: UPF0481 protein At3g47200-like [Cucumis melo])

HSP 1 Score: 109.0 bits (271), Expect = 1.1e-20
Identity = 60/100 (60.00%), Postives = 71/100 (71.00%), Query Frame = 0


Query: 1   MEKSEIEMPEANDTTHNVAEISEVDQQLCGKIVISMEEMMKQLPAINRESSIYRVPKQLS 60
           ME SEI     ND   N A ISEV ++ CG IVIS++  ++QLPA+N E SIYRVPK L 
Sbjct: 1   MENSEIN----NDQVSNEAVISEVKRKHCGDIVISIKSKLEQLPAVNTECSIYRVPKLLC 60

Query: 61  EMNPKAYAPQLISIGPFHHGCQKDFRATEQYKLRALINFL 101
           +MN  AY PQ+ISIGPFHHG  KD  ATE+YKL+ L NFL
Sbjct: 61  QMNRIAYVPQVISIGPFHHG-SKDLNATERYKLQGLRNFL 95

[Close]

BLAST of Cla97C08G156560.1 vs. TrEMBL
Match: tr|A0A1S4DVE9|A0A1S4DVE9_CUCME (uncharacterized protein LOC107990712 OS=Cucumis melo OX=3656 GN=LOC107990712 PE=4 SV=1)

HSP 1 Score: 114.4 bits (285), Expect = 1.7e-22
Identity = 60/98 (61.22%), Postives = 75/98 (76.53%), Query Frame = 0


Query: 10  EANDTTHN-VAEISEVDQQLCGKIVISMEEMMKQLPAINRESSIYRVPKQLSEMNPKAYA 69
           EA   ++N + +ISE  Q     + IS+EEM+ Q+ +INR+ SIYRVPKQL +MNP+AY 
Sbjct: 75  EAKSVSNNDMPQISETQQD---NVAISIEEMLNQMHSINRDCSIYRVPKQLRKMNPEAYT 134

Query: 70  PQLISIGPFHH-GCQKDFRATEQYKLRALINFLPVSIM 106
           PQLISIGPFHH  CQ DF+ATEQYKL+AL+NFL V IM
Sbjct: 135 PQLISIGPFHHYRCQNDFKATEQYKLQALVNFLRVLIM 169

[Close]

BLAST of Cla97C08G156560.1 vs. TrEMBL
Match: tr|A0A1S3BD29|A0A1S3BD29_CUCME (LOW QUALITY PROTEIN: UPF0481 protein At3g47200-like OS=Cucumis melo OX=3656 GN=LOC103488563 PE=4 SV=1)

HSP 1 Score: 112.5 bits (280), Expect = 6.6e-22
Identity = 60/101 (59.41%), Postives = 76/101 (75.25%), Query Frame = 0


Query: 4   SEIEM--PEANDTTHN-VAEISEVDQQLCGKIVISMEEMMKQLPAINRESSIYRVPKQLS 63
           SEI M   EA   ++N + +I E  Q LC  +VIS+++M+ Q+ +IN + SIYR+PKQL 
Sbjct: 15  SEIGMHKVEAESVSNNEMPQIIEAQQDLCDNVVISIQKMLNQMHSINGDCSIYRIPKQLR 74

Query: 64  EMNPKAYAPQLISIGPFHH-GCQKDFRATEQYKLRALINFL 101
           EMNPKAY PQLISIGPFHH   Q DF+ATEQYKL+AL+NFL
Sbjct: 75  EMNPKAYTPQLISIGPFHHYRRQNDFKATEQYKLQALVNFL 115

[Close]

BLAST of Cla97C08G156560.1 vs. TrEMBL
Match: tr|A0A1S3BDS2|A0A1S3BDS2_CUCME (UPF0481 protein At3g47200-like OS=Cucumis melo OX=3656 GN=LOC103488564 PE=4 SV=1)

HSP 1 Score: 112.1 bits (279), Expect = 8.6e-22
Identity = 58/101 (57.43%), Postives = 71/101 (70.30%), Query Frame = 0


Query: 1   MEKSEIEMPEANDTTHNVAEISEVDQQLCGKIVISMEEMMKQLPAINRESSIYRVPKQLS 60
           + K E E    ND    + +I E  Q LC  +VIS++ M+ Q+  IN + SIYR+PKQL 
Sbjct: 19  VHKVEAESVSDND----MPQIIEAQQDLCDNVVISIQIMLNQMCPINGDCSIYRIPKQLR 78

Query: 61  EMNPKAYAPQLISIGPFHH-GCQKDFRATEQYKLRALINFL 101
           EMNPKAY PQLISIGPFHH  CQ DF+ TEQYKL+AL+NFL
Sbjct: 79  EMNPKAYTPQLISIGPFHHYRCQNDFKTTEQYKLQALVNFL 115

[Close]

BLAST of Cla97C08G156560.1 vs. TrEMBL
Match: tr|A0A1S4DVF8|A0A1S4DVF8_CUCME (UPF0481 protein At3g47200-like OS=Cucumis melo OX=3656 GN=LOC103488291 PE=4 SV=1)

HSP 1 Score: 109.0 bits (271), Expect = 7.3e-21
Identity = 60/100 (60.00%), Postives = 71/100 (71.00%), Query Frame = 0


Query: 1   MEKSEIEMPEANDTTHNVAEISEVDQQLCGKIVISMEEMMKQLPAINRESSIYRVPKQLS 60
           ME SEI     ND   N A ISEV ++ CG IVIS++  ++QLPA+N E SIYRVPK L 
Sbjct: 1   MENSEIN----NDQVSNEAVISEVKRKHCGDIVISIKSKLEQLPAVNTECSIYRVPKLLC 60

Query: 61  EMNPKAYAPQLISIGPFHHGCQKDFRATEQYKLRALINFL 101
           +MN  AY PQ+ISIGPFHHG  KD  ATE+YKL+ L NFL
Sbjct: 61  QMNRIAYVPQVISIGPFHHG-SKDLNATERYKLQGLRNFL 95

[Close]

BLAST of Cla97C08G156560.1 vs. TrEMBL
Match: tr|A0A1S3BBL9|A0A1S3BBL9_CUCME (UPF0481 protein At3g47200-like OS=Cucumis melo OX=3656 GN=LOC103488293 PE=4 SV=1)

HSP 1 Score: 105.9 bits (263), Expect = 6.1e-20
Identity = 54/93 (58.06%), Postives = 70/93 (75.27%), Query Frame = 0


Query: 11  ANDTTHNVAEISEVDQQ--LCGKIVISMEEMMKQLPAIN-RESSIYRVPKQLSEMNPKAY 70
           +N  ++N+ EIS VDQQ  +C  +VIS+E+M+ Q+P  +  + SIYRVPKQL EMNPKAY
Sbjct: 18  SNQKSNNMVEISVVDQQQLVCDNVVISIEKMLDQVPPTHENQCSIYRVPKQLREMNPKAY 77

Query: 71  APQLISIGPFHHGCQKDFRATEQYKLRALINFL 101
           APQLISIGPFH+   K+  A EQYKL+  IN+L
Sbjct: 78  APQLISIGPFHYHTHKNLIANEQYKLQGFINYL 110

[Close]

BLAST of Cla97C08G156560.1 vs. Swiss-Prot
Match: sp|Q9SD53|Y3720_ARATH (UPF0481 protein At3g47200 OS=Arabidopsis thaliana OX=3702 GN=At3g47200 PE=2 SV=1)

HSP 1 Score: 52.0 bits (123), Expect = 5.2e-06
Identity = 26/59 (44.07%), Postives = 40/59 (67.80%), Query Frame = 0


Query: 43  LPAINRES-SIYRVPKQLSEMNPKAYAPQLISIGPFHHGCQKDFRATEQYKLRALINFL 101
           L +  +ES  I+RVP+    +NPKAY P+++SIGP+H+G +K  +  +Q+K R L  FL
Sbjct: 38  LESAGKESCCIFRVPESFVALNPKAYKPKVVSIGPYHYG-EKHLQMIQQHKPRLLQLFL 95

[Close]

BLAST of Cla97C08G156560.1 vs. TAIR10
Match: AT3G47210.1 (Plant protein of unknown function (DUF247))

HSP 1 Score: 61.2 bits (147), Expect = 4.8e-10
Identity = 35/88 (39.77%), Postives = 57/88 (64.77%), Query Frame = 0


Query: 21  ISEVDQQLCGKIVISMEEMMKQLPAINRES-SIYRVPKQLSEMNPKAYAPQLISIGPFHH 80
           IS +++Q+  ++    E+ +  L +  +ES  I+RVPK  +EMNP+AY P+++SIGP+HH
Sbjct: 65  ISYINEQV--ELDSRSEKRVLLLESAGKESCCIFRVPKSFAEMNPEAYKPKVVSIGPYHH 124

Query: 81  GCQKDFRATEQYKLRALINFLPVSIMTR 108
           G +K     +Q+KLR L  FL  + + R
Sbjct: 125 G-RKHLEMIQQHKLRFLHLFLRTASVDR 149

[Close]

BLAST of Cla97C08G156560.1 vs. TAIR10
Match: AT4G31980.1 (unknown protein)

HSP 1 Score: 58.2 bits (139), Expect = 4.0e-09
Identity = 26/70 (37.14%), Postives = 46/70 (65.71%), Query Frame = 0


Query: 32  IVISMEEMMKQLPAINRESSIYRVPKQLSEMNPKAYAPQLISIGPFHHGCQKDFRATEQY 91
           +V S++  +  L +++ +  IY+VP +L  +NP AY P+L+S GP H G +++ +A E  
Sbjct: 275 LVDSIKAKLAFLSSLSTKCCIYKVPNKLRRLNPDAYTPRLVSFGPLHRG-KEELQAMEDQ 334

Query: 92  KLRALINFLP 102
           K R L++F+P
Sbjct: 335 KYRYLLSFIP 343

[Close]

BLAST of Cla97C08G156560.1 vs. TAIR10
Match: AT3G50160.1 (Plant protein of unknown function (DUF247))

HSP 1 Score: 53.9 bits (128), Expect = 7.6e-08
Identity = 37/97 (38.14%), Postives = 53/97 (54.64%), Query Frame = 0


Query: 6   IEMPEANDTTHNVAEISEVDQQLCGKI-VISMEEMMKQLPAINRESS-----IYRVPKQL 65
           IE         +V  I + ++Q   +I VIS+ + MK L   N  +S     IYRVP  L
Sbjct: 55  IEEKPRETQVESVVSIEDKNEQKLREIWVISLNDKMKTL-GDNATTSWDNLCIYRVPPYL 114

Query: 66  SEMNPKAYAPQLISIGPFHHGCQKDFRATEQYKLRAL 97
            E + K+Y PQ++SIGP+HHG  K     E++K RA+
Sbjct: 115 QENDTKSYMPQIVSIGPYHHG-HKHLMPMERHKWRAV 149

[Close]

BLAST of Cla97C08G156560.1 vs. TAIR10
Match: AT3G47250.1 (Plant protein of unknown function (DUF247))

HSP 1 Score: 52.4 bits (124), Expect = 2.2e-07
Identity = 28/74 (37.84%), Postives = 44/74 (59.46%), Query Frame = 0


Query: 27  QLCGKIVISMEEMMKQLPAINRESSIYRVPKQLSEMNPKAYAPQLISIGPFHHGCQKDFR 86
           Q  GK +I +E   K          I+R+P  L+E+NPKAY P+++SIGP+H+G +   +
Sbjct: 44  QSSGKPLILLESAGK------ASCCIFRIPDSLAEVNPKAYKPKVVSIGPYHYG-ENHLQ 103

Query: 87  ATEQYKLRALINFL 101
             +Q+K R L  F+
Sbjct: 104 MIQQHKFRFLELFV 110

[Close]

BLAST of Cla97C08G156560.1 vs. TAIR10
Match: AT3G47200.1 (Plant protein of unknown function (DUF247))

HSP 1 Score: 52.0 bits (123), Expect = 2.9e-07
Identity = 26/59 (44.07%), Postives = 40/59 (67.80%), Query Frame = 0


Query: 43  LPAINRES-SIYRVPKQLSEMNPKAYAPQLISIGPFHHGCQKDFRATEQYKLRALINFL 101
           L +  +ES  I+RVP+    +NPKAY P+++SIGP+H+G +K  +  +Q+K R L  FL
Sbjct: 38  LESAGKESCCIFRVPESFVALNPKAYKPKVVSIGPYHYG-EKHLQMIQQHKPRLLQLFL 95

The following BLAST results are available for this feature:

BLAST of Cla97C08G156560.1 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_016899961.1	2.6e-22	61.22	PREDICTED: uncharacterized protein LOC107990712 [Cucumis melo]	[more]
XP_008445583.2	9.9e-22	59.41	PREDICTED: LOW QUALITY PROTEIN: UPF0481 protein At3g47200-like [Cucumis melo]	[more]
XP_008445584.2	1.3e-21	57.43	PREDICTED: UPF0481 protein At3g47200-like [Cucumis melo]	[more]
XP_022961891.1	2.2e-21	57.58	UPF0481 protein At3g47200-like isoform X1 [Cucurbita moschata]	[more]
XP_016899969.1	1.1e-20	60.00	PREDICTED: UPF0481 protein At3g47200-like [Cucumis melo]	[more]

BLAST of Cla97C08G156560.1 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A1S4DVE9\|A0A1S4DVE9_CUCME	1.7e-22	61.22	uncharacterized protein LOC107990712 OS=Cucumis melo OX=3656 GN=LOC107990712 PE=...	[more]
tr\|A0A1S3BD29\|A0A1S3BD29_CUCME	6.6e-22	59.41	LOW QUALITY PROTEIN: UPF0481 protein At3g47200-like OS=Cucumis melo OX=3656 GN=L...	[more]
tr\|A0A1S3BDS2\|A0A1S3BDS2_CUCME	8.6e-22	57.43	UPF0481 protein At3g47200-like OS=Cucumis melo OX=3656 GN=LOC103488564 PE=4 SV=1	[more]
tr\|A0A1S4DVF8\|A0A1S4DVF8_CUCME	7.3e-21	60.00	UPF0481 protein At3g47200-like OS=Cucumis melo OX=3656 GN=LOC103488291 PE=4 SV=1	[more]
tr\|A0A1S3BBL9\|A0A1S3BBL9_CUCME	6.1e-20	58.06	UPF0481 protein At3g47200-like OS=Cucumis melo OX=3656 GN=LOC103488293 PE=4 SV=1	[more]

BLAST of Cla97C08G156560.1 vs. Swiss-Prot


Match Name	E-value	Identity	Description
sp\|Q9SD53\|Y3720_ARATH	5.2e-06	44.07	UPF0481 protein At3g47200 OS=Arabidopsis thaliana OX=3702 GN=At3g47200 PE=2 SV=1	[more]

BLAST of Cla97C08G156560.1 vs. TAIR10


Match Name	E-value	Identity	Description
AT3G47210.1	4.8e-10	39.77	Plant protein of unknown function (DUF247)	[more]
AT4G31980.1	4.0e-09	37.14	unknown protein	[more]
AT3G50160.1	7.6e-08	38.14	Plant protein of unknown function (DUF247)	[more]
AT3G47250.1	2.2e-07	37.84	Plant protein of unknown function (DUF247)	[more]
AT3G47200.1	2.9e-07	44.07	Plant protein of unknown function (DUF247)	[more]

Annotated Terms

The following terms have been associated with this mRNA:

Vocabulary: **INTERPRO**
Term	Definition
IPR004158	DUF247_pln

GO Annotation

GO Assignments

This mRNA is annotated with the following GO terms.

Category	Term Accession	Term Name
cellular_component	GO:0016021	integral component of membrane
cellular_component	GO:0016020	membrane

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
Cla97C08G156560	Cla97C08G156560	gene

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Cla97C08G156560.1.CDS.1	Cla97C08G156560.1.CDS.1	CDS

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Cla97C08G156560.1.exon.1	Cla97C08G156560.1.exon.1	exon

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
Cla97C08G156560.1	Cla97C08G156560.1-protein	polypeptide

InterPro

Analysis Name: InterPro Annotations of watermelon 97103 v2
Date Performed: 2019-05-12


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR004158	Protein of unknown function DUF247, plant	PFAM	PF03140	DUF247	coord: 52..100 e-value: 4.8E-14 score: 52.3
None	No IPR available	PANTHER	PTHR31549	FAMILY NOT NAMED	coord: 13..108
None	No IPR available	PANTHER	PTHR31549:SF65	SUBFAMILY NOT NAMED	coord: 13..108