Cla97C08G156150.1 (mRNA) Watermelon (97103) v2 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Cla97C08G156150.1
Type	mRNA
Organism	Citrullus lanatus (Watermelon (97103) v2)
Description	Pentatricopeptide repeat
Location	Cla97Chr08 : 24031622 .. 24033406 (+)
Sequence length	1785

Genome Viewer

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGCGTTTTGGTAAAATTGCCGCCATTAATCACCCACACCAACTTCGCCGGAATGTTTGCTTTCTGATGAATTATTCTTCGTCCTGTGCTCTTAGCAGTTTAAATATCATCGAAGAGAGCAATACCCAAAACTGGAATTACCTCGAGTTGCAGTCTCGAATGCAGAACTATGCGGCTTCTGGTGATCTTGCTGAAGCTCTGGAGACTTTGAATTCTATGAGAAATGTTGCTGGGAAGCCCTCTGTGTATGATTACAACGCTTTGTTTCATAGATATTTGAGTTCTGGAAATGTTTTGTTGGAACCATTGGTTCAAGTGTATATAGGAATGAAGAGGTTTGGACCAACCCCAAATAAAACGACTTTCAACATACTTCTTAATGGACTCATGTCCTCGGGTTATCTTAGAGATGCATATTTCTTTGCAGAAGAGATGACCAAGAGTGGGATAAATCCATCCTTCACATCCTTGTCCAAATTGCTTAAAATTTCAATGAAATCGGGTAGCTTACTAGATTCTATTTGGATATTCAAGTTCATGTTGAAGTTAGACCATTTGCCAACTGAACCCACTTTAGCCATGTTTGTTTGTATGCTTTGTAAAGCCAGGATGTTGGAAGAGGCATACAGCTTTTGTGCTGCACTTCTATCCAAAAGTTTTAATTTTCAAGCATATGTATTTAATCCTGTTCTTTGGGCTTTATGTAAGTTTGGCCAGAGTTTTCTAGCTTTGCAGTTGTTTTATATGATGAAAAAGAAAGGCATGACTCATAATGTATGTTCATATACTGCTTTGCTTTATGGATTTGGAAGGGAACGTTTGTGGGTAGATCTTTATCGTTGTTTAGATCAAATGAGAAGTGATGGATTGAAGCCCAATGTCATTACTTATACAGTTATTATTAAGTTTCTTTGTGATGATGGAAGGATTGGTGAAGCATTTGAATTCTTGAAATTCATGGAAGGGGAGGGATGTGATCCAGACTTGGTAACTTACAATATAATTATATGTGCACTTTGCTTTCACGATAAAGCATACGATGTTGCTGAGATTTTGCAGGTGATTCATCACAGAGGTTTCTCTCCTGATGCATATACATATACTGCTTTGGCTGGAGGGATGGTGAAAGTAGGAAAGTTAGAAATTGCTTATGAGTTATTGCGTAATGTGATCTCGAGAAACTGTACTGTTGACGTTGTTGTGTACAATATATACTTCCATTGCTTGTGTCAAAATAGTAGATCAAGAGAAGCACTTTCTCTGTTGAAAAGTATGAAAGAAGAAGGTATTACTCCAACTACTGTGTCATATAACACAGTTTTAAGGGGCTTTTGTAGAGATTATAATCTTGAACATGCACTGAAGCTATTAGTCTGCTTCGAGTGGCCTGAGAGCAGCCCTGATGTGGTTTCATTCAATACAGTTCTCTCTGCAGCATGCAAAACTGGGGATTTAGATCTAATTCACAGGGTCTTGCATTGTATGGAATGTAGAGGTGTTGAGCCAAATGTAATAAGTTTTACTTGTTTAGTACAATATTTGTCTACAATGGGAAGATACTCAGAATGCTTGAAATTATTGGAATACATGGTATGGAACGGCCCTGCTCCCTCAAGTGTCACTTTCAATATCCTCCTTGACAAGCTTTGCAGAAGTGGATTTGTTAGCACTGCATACCAGATATTTGAGTGTCTCCAAAAAGCTGGATTATCGCTCGATAGAAGAACTTACAGAATTCTTCTACGTGCCTTATTAAGGAAGCGTGATGTCAACCTGATTGAATGA

mRNA sequence

ATGCGTTTTGGTAAAATTGCCGCCATTAATCACCCACACCAACTTCGCCGGAATGTTTGCTTTCTGATGAATTATTCTTCGTCCTGTGCTCTTAGCAGTTTAAATATCATCGAAGAGAGCAATACCCAAAACTGGAATTACCTCGAGTTGCAGTCTCGAATGCAGAACTATGCGGCTTCTGGTGATCTTGCTGAAGCTCTGGAGACTTTGAATTCTATGAGAAATGTTGCTGGGAAGCCCTCTGTGTATGATTACAACGCTTTGTTTCATAGATATTTGAGTTCTGGAAATGTTTTGTTGGAACCATTGGTTCAAGTGTATATAGGAATGAAGAGGTTTGGACCAACCCCAAATAAAACGACTTTCAACATACTTCTTAATGGACTCATGTCCTCGGGTTATCTTAGAGATGCATATTTCTTTGCAGAAGAGATGACCAAGAGTGGGATAAATCCATCCTTCACATCCTTGTCCAAATTGCTTAAAATTTCAATGAAATCGGGTAGCTTACTAGATTCTATTTGGATATTCAAGTTCATGTTGAAGTTAGACCATTTGCCAACTGAACCCACTTTAGCCATGTTTGTTTGTATGCTTTGTAAAGCCAGGATGTTGGAAGAGGCATACAGCTTTTGTGCTGCACTTCTATCCAAAAGTTTTAATTTTCAAGCATATGTATTTAATCCTGTTCTTTGGGCTTTATGTAAGTTTGGCCAGAGTTTTCTAGCTTTGCAGTTGTTTTATATGATGAAAAAGAAAGGCATGACTCATAATGTATGTTCATATACTGCTTTGCTTTATGGATTTGGAAGGGAACGTTTGTGGGTAGATCTTTATCGTTGTTTAGATCAAATGAGAAGTGATGGATTGAAGCCCAATGTCATTACTTATACAGTTATTATTAAGTTTCTTTGTGATGATGGAAGGATTGGTGAAGCATTTGAATTCTTGAAATTCATGGAAGGGGAGGGATGTGATCCAGACTTGGTAACTTACAATATAATTATATGTGCACTTTGCTTTCACGATAAAGCATACGATGTTGCTGAGATTTTGCAGGTGATTCATCACAGAGGTTTCTCTCCTGATGCATATACATATACTGCTTTGGCTGGAGGGATGGTGAAAGTAGGAAAGTTAGAAATTGCTTATGAGTTATTGCGTAATGTGATCTCGAGAAACTGTACTGTTGACGTTGTTGTGTACAATATATACTTCCATTGCTTGTGTCAAAATAGTAGATCAAGAGAAGCACTTTCTCTGTTGAAAAGTATGAAAGAAGAAGGTATTACTCCAACTACTGTGTCATATAACACAGTTTTAAGGGGCTTTTGTAGAGATTATAATCTTGAACATGCACTGAAGCTATTAGTCTGCTTCGAGTGGCCTGAGAGCAGCCCTGATGTGGTTTCATTCAATACAGTTCTCTCTGCAGCATGCAAAACTGGGGATTTAGATCTAATTCACAGGGTCTTGCATTGTATGGAATGTAGAGGTGTTGAGCCAAATGTAATAAGTTTTACTTGTTTAGTACAATATTTGTCTACAATGGGAAGATACTCAGAATGCTTGAAATTATTGGAATACATGGTATGGAACGGCCCTGCTCCCTCAAGTGTCACTTTCAATATCCTCCTTGACAAGCTTTGCAGAAGTGGATTTGTTAGCACTGCATACCAGATATTTGAGTGTCTCCAAAAAGCTGGATTATCGCTCGATAGAAGAACTTACAGAATTCTTCTACGTGCCTTATTAAGGAAGCGTGATGTCAACCTGATTGAATGA

Coding sequence (CDS)

ATGCGTTTTGGTAAAATTGCCGCCATTAATCACCCACACCAACTTCGCCGGAATGTTTGCTTTCTGATGAATTATTCTTCGTCCTGTGCTCTTAGCAGTTTAAATATCATCGAAGAGAGCAATACCCAAAACTGGAATTACCTCGAGTTGCAGTCTCGAATGCAGAACTATGCGGCTTCTGGTGATCTTGCTGAAGCTCTGGAGACTTTGAATTCTATGAGAAATGTTGCTGGGAAGCCCTCTGTGTATGATTACAACGCTTTGTTTCATAGATATTTGAGTTCTGGAAATGTTTTGTTGGAACCATTGGTTCAAGTGTATATAGGAATGAAGAGGTTTGGACCAACCCCAAATAAAACGACTTTCAACATACTTCTTAATGGACTCATGTCCTCGGGTTATCTTAGAGATGCATATTTCTTTGCAGAAGAGATGACCAAGAGTGGGATAAATCCATCCTTCACATCCTTGTCCAAATTGCTTAAAATTTCAATGAAATCGGGTAGCTTACTAGATTCTATTTGGATATTCAAGTTCATGTTGAAGTTAGACCATTTGCCAACTGAACCCACTTTAGCCATGTTTGTTTGTATGCTTTGTAAAGCCAGGATGTTGGAAGAGGCATACAGCTTTTGTGCTGCACTTCTATCCAAAAGTTTTAATTTTCAAGCATATGTATTTAATCCTGTTCTTTGGGCTTTATGTAAGTTTGGCCAGAGTTTTCTAGCTTTGCAGTTGTTTTATATGATGAAAAAGAAAGGCATGACTCATAATGTATGTTCATATACTGCTTTGCTTTATGGATTTGGAAGGGAACGTTTGTGGGTAGATCTTTATCGTTGTTTAGATCAAATGAGAAGTGATGGATTGAAGCCCAATGTCATTACTTATACAGTTATTATTAAGTTTCTTTGTGATGATGGAAGGATTGGTGAAGCATTTGAATTCTTGAAATTCATGGAAGGGGAGGGATGTGATCCAGACTTGGTAACTTACAATATAATTATATGTGCACTTTGCTTTCACGATAAAGCATACGATGTTGCTGAGATTTTGCAGGTGATTCATCACAGAGGTTTCTCTCCTGATGCATATACATATACTGCTTTGGCTGGAGGGATGGTGAAAGTAGGAAAGTTAGAAATTGCTTATGAGTTATTGCGTAATGTGATCTCGAGAAACTGTACTGTTGACGTTGTTGTGTACAATATATACTTCCATTGCTTGTGTCAAAATAGTAGATCAAGAGAAGCACTTTCTCTGTTGAAAAGTATGAAAGAAGAAGGTATTACTCCAACTACTGTGTCATATAACACAGTTTTAAGGGGCTTTTGTAGAGATTATAATCTTGAACATGCACTGAAGCTATTAGTCTGCTTCGAGTGGCCTGAGAGCAGCCCTGATGTGGTTTCATTCAATACAGTTCTCTCTGCAGCATGCAAAACTGGGGATTTAGATCTAATTCACAGGGTCTTGCATTGTATGGAATGTAGAGGTGTTGAGCCAAATGTAATAAGTTTTACTTGTTTAGTACAATATTTGTCTACAATGGGAAGATACTCAGAATGCTTGAAATTATTGGAATACATGGTATGGAACGGCCCTGCTCCCTCAAGTGTCACTTTCAATATCCTCCTTGACAAGCTTTGCAGAAGTGGATTTGTTAGCACTGCATACCAGATATTTGAGTGTCTCCAAAAAGCTGGATTATCGCTCGATAGAAGAACTTACAGAATTCTTCTACGTGCCTTATTAAGGAAGCGTGATGTCAACCTGATTGAATGA

Protein sequence

MRFGKIAAINHPHQLRRNVCFLMNYSSSCALSSLNIIEESNTQNWNYLELQSRMQNYAASGDLAEALETLNSMRNVAGKPSVYDYNALFHRYLSSGNVLLEPLVQVYIGMKRFGPTPNKTTFNILLNGLMSSGYLRDAYFFAEEMTKSGINPSFTSLSKLLKISMKSGSLLDSIWIFKFMLKLDHLPTEPTLAMFVCMLCKARMLEEAYSFCAALLSKSFNFQAYVFNPVLWALCKFGQSFLALQLFYMMKKKGMTHNVCSYTALLYGFGRERLWVDLYRCLDQMRSDGLKPNVITYTVIIKFLCDDGRIGEAFEFLKFMEGEGCDPDLVTYNIIICALCFHDKAYDVAEILQVIHHRGFSPDAYTYTALAGGMVKVGKLEIAYELLRNVISRNCTVDVVVYNIYFHCLCQNSRSREALSLLKSMKEEGITPTTVSYNTVLRGFCRDYNLEHALKLLVCFEWPESSPDVVSFNTVLSAACKTGDLDLIHRVLHCMECRGVEPNVISFTCLVQYLSTMGRYSECLKLLEYMVWNGPAPSSVTFNILLDKLCRSGFVSTAYQIFECLQKAGLSLDRRTYRILLRALLRKRDVNLIE

Homology

[Close]

BLAST of Cla97C08G156150.1 vs. NCBI nr
Match: XP_023002254.1 (pentatricopeptide repeat-containing protein At3g53700, chloroplastic-like isoform X1 [Cucurbita maxima])

HSP 1 Score: 412.9 bits (1060), Expect = 1.8e-111
Identity = 204/283 (72.08%), Postives = 225/283 (79.51%), Query Frame = 0


Query: 1   MRFGKIAAINHPHQLRRNVCFLMNYSSSCALSSLNIIEESNTQNWNYLELQSRMQNYAAS 60
           MRF  I AIN+PH+L R + F +NYS+SCALSS+NII++SNT NW YL+LQSRMQNYAAS
Sbjct: 1   MRFASIPAINYPHRLTRKLRFSVNYSTSCALSSVNIIQDSNTHNWKYLDLQSRMQNYAAS 60

Query: 61  GDLAEALETLNSMRNVAGKPSVYDYNALFHRYLSSGNVLLEPLVQVYIGMKRFGPTPNKT 120
           GDL EALETLN M+NVAGKPS+YDYNALFHRYLSSGNV LE LVQVYIGMK FGP+PN+T
Sbjct: 61  GDLPEALETLNFMKNVAGKPSIYDYNALFHRYLSSGNVSLEQLVQVYIGMKNFGPSPNRT 120

Query: 121 TFNILLNGLMSSGYLRDAYFFAEEMTKSGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 180
           TFNILLNG +S GYLRDAYFFAEEMTKSG                               
Sbjct: 121 TFNILLNGFLSLGYLRDAYFFAEEMTKSGMNPSFTSLSKLLKSSMKSGNLVDSIWIFKFM 180

Query: 181 XKLDHLPTEPTLAMFVCMLCKARMLEEAYSFCAALLSKSFNFQAYVFNPVLWALCKFGQS 240
            +LDHLPTEPT+AMF+CMLCKARMLEEAY FCA L+SK+ NFQAYVFNPVLWALCK G+S
Sbjct: 181 LRLDHLPTEPTVAMFICMLCKARMLEEAYRFCAKLISKNLNFQAYVFNPVLWALCKCGKS 240

Query: 241 FLALQLFYMMKKKGMTHNVCSYTALLYGFGRERLWVDLYRCLD 284
            LALQLFYMMKK G+ HNVCSYTALLYGFGRE LWVDLY  LD
Sbjct: 241 SLALQLFYMMKKNGIAHNVCSYTALLYGFGRECLWVDLYSFLD 283

[Close]

BLAST of Cla97C08G156150.1 vs. NCBI nr
Match: XP_022131368.1 (pentatricopeptide repeat-containing protein At1g09900-like [Momordica charantia])

HSP 1 Score: 412.5 bits (1059), Expect = 2.4e-111
Identity = 204/281 (72.60%), Postives = 227/281 (80.78%), Query Frame = 0


Query: 1   MRFGKIAAINHPHQLRRNVCFLMNYSSSCALSSLNIIEESNTQNWNYLELQSRMQNYAAS 60
           MRF  I  IN+P++L R+ CFL+NYS+SCA+SS+NIIEESNT NWNYL+LQSRMQ+ AAS
Sbjct: 1   MRFCTIPTINYPYRLGRSFCFLVNYSTSCAISSVNIIEESNTHNWNYLQLQSRMQDRAAS 60

Query: 61  GDLAEALETLNSMRNVAGKPSVYDYNALFHRYLSSGNVLLEPLVQVYIGMKRFGPTPNKT 120
           GDLAEALETLN MR++ GKPSVYDYNALF RYLSS NVLLE LVQVYIGMKRFGP PNKT
Sbjct: 61  GDLAEALETLNFMRSITGKPSVYDYNALFCRYLSSENVLLEQLVQVYIGMKRFGPAPNKT 120

Query: 121 TFNILLNGLMSSGYLRDAYFFAEEMTKSGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 180
           TFNILLNGL+S G+LRDAYFF EEMTKSG                               
Sbjct: 121 TFNILLNGLLSLGFLRDAYFFVEEMTKSGINPSFTFLSKWLKKSLKSGNLVDSIWIFEFM 180

Query: 181 XKLDHLPTEPTLAMFVCMLCKARMLEEAYSFCAALLSKSFNFQAYVFNPVLWALCKFGQS 240
            +LDHLPTEPTLAMF+C+LCK++MLEEA  FCAALLSK+  FQAYVFNP++WALCK G+S
Sbjct: 181 LRLDHLPTEPTLAMFICLLCKSKMLEEASRFCAALLSKNLTFQAYVFNPIIWALCKSGKS 240

Query: 241 FLALQLFYMMKKKGMTHNVCSYTALLYGFGRERLWVDLYRC 282
           FLALQLFYMMKKKGMTHNVCSYTALLYGFGRE LWVDLYRC
Sbjct: 241 FLALQLFYMMKKKGMTHNVCSYTALLYGFGRECLWVDLYRC 281

[Close]

BLAST of Cla97C08G156150.1 vs. NCBI nr
Match: XP_023522453.1 (pentatricopeptide repeat-containing protein At1g64583, mitochondrial-like isoform X1 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 409.1 bits (1050), Expect = 2.6e-110
Identity = 202/283 (71.38%), Postives = 222/283 (78.45%), Query Frame = 0


Query: 1   MRFGKIAAINHPHQLRRNVCFLMNYSSSCALSSLNIIEESNTQNWNYLELQSRMQNYAAS 60
           MRF  I A+N+PH+L R  C  +NYS+SCALSS+NIIE+SNT +W YL+LQSRMQNYAAS
Sbjct: 1   MRFASIPALNYPHRLTRKFCSSVNYSTSCALSSINIIEDSNTHSWKYLDLQSRMQNYAAS 60

Query: 61  GDLAEALETLNSMRNVAGKPSVYDYNALFHRYLSSGNVLLEPLVQVYIGMKRFGPTPNKT 120
           GDL EALETLN M+NVAGKPSVYDYNALFHRYLSSGNV +E LVQVYIGMK  GP+PN+T
Sbjct: 61  GDLPEALETLNFMKNVAGKPSVYDYNALFHRYLSSGNVSVEQLVQVYIGMKNLGPSPNRT 120

Query: 121 TFNILLNGLMSSGYLRDAYFFAEEMTKSGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 180
           TFNILLNG +S GYLRDAYFFAEEMTKSG                               
Sbjct: 121 TFNILLNGFLSLGYLRDAYFFAEEMTKSGMNPSFTSLSKLLKSSMKSGNLVDSIWIFKFM 180

Query: 181 XKLDHLPTEPTLAMFVCMLCKARMLEEAYSFCAALLSKSFNFQAYVFNPVLWALCKFGQS 240
            +LDHLPTEPT+AMF+CMLCKARMLEEAY FCA L+SK+ NFQAYVFNPVLWALCK G S
Sbjct: 181 LRLDHLPTEPTVAMFICMLCKARMLEEAYRFCAKLISKNLNFQAYVFNPVLWALCKCGNS 240

Query: 241 FLALQLFYMMKKKGMTHNVCSYTALLYGFGRERLWVDLYRCLD 284
            LALQLFYMMKK G+ HNVCSYTALLYGFGRE LWVDLY  LD
Sbjct: 241 SLALQLFYMMKKNGIAHNVCSYTALLYGFGRECLWVDLYSFLD 283

[Close]

BLAST of Cla97C08G156150.1 vs. NCBI nr
Match: XP_023537059.1 (pentatricopeptide repeat-containing protein At1g09900-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 409.1 bits (1050), Expect = 2.6e-110
Identity = 202/283 (71.38%), Postives = 222/283 (78.45%), Query Frame = 0


Query: 1   MRFGKIAAINHPHQLRRNVCFLMNYSSSCALSSLNIIEESNTQNWNYLELQSRMQNYAAS 60
           MRF  I A+N+PH+L R  C  +NYS+SCALSS+NIIE+SNT +W YL+LQSRMQNYAAS
Sbjct: 1   MRFASIPALNYPHRLTRKFCSSVNYSTSCALSSINIIEDSNTHSWKYLDLQSRMQNYAAS 60

Query: 61  GDLAEALETLNSMRNVAGKPSVYDYNALFHRYLSSGNVLLEPLVQVYIGMKRFGPTPNKT 120
           GDL EALETLN M+NVAGKPSVYDYNALFHRYLSSGNV +E LVQVYIGMK  GP+PN+T
Sbjct: 61  GDLPEALETLNFMKNVAGKPSVYDYNALFHRYLSSGNVSVEQLVQVYIGMKNLGPSPNRT 120

Query: 121 TFNILLNGLMSSGYLRDAYFFAEEMTKSGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 180
           TFNILLNG +S GYLRDAYFFAEEMTKSG                               
Sbjct: 121 TFNILLNGFLSLGYLRDAYFFAEEMTKSGMNPSFTSLSKLLKSSMKSGNLVDSIWIFKFM 180

Query: 181 XKLDHLPTEPTLAMFVCMLCKARMLEEAYSFCAALLSKSFNFQAYVFNPVLWALCKFGQS 240
            +LDHLPTEPT+AMF+CMLCKARMLEEAY FCA L+SK+ NFQAYVFNPVLWALCK G S
Sbjct: 181 LRLDHLPTEPTVAMFICMLCKARMLEEAYRFCAKLISKNLNFQAYVFNPVLWALCKCGNS 240

Query: 241 FLALQLFYMMKKKGMTHNVCSYTALLYGFGRERLWVDLYRCLD 284
            LALQLFYMMKK G+ HNVCSYTALLYGFGRE LWVDLY  LD
Sbjct: 241 SLALQLFYMMKKNGIAHNVCSYTALLYGFGRECLWVDLYSFLD 283

[Close]

BLAST of Cla97C08G156150.1 vs. NCBI nr
Match: XP_022951234.1 (putative pentatricopeptide repeat-containing protein At1g12700, mitochondrial isoform X1 [Cucurbita moschata])

HSP 1 Score: 399.8 bits (1026), Expect = 1.6e-107
Identity = 201/279 (72.04%), Postives = 219/279 (78.49%), Query Frame = 0


Query: 1   MRFGKIAAINHPHQLRRNVCFLMNYSSSCALSSLNIIEESNTQNWNYLELQSRMQNYAAS 60
           MRF  I AIN+PH+L R +    NYS+SCALSS+NIIE+S+T N  YL+LQSRMQNYAAS
Sbjct: 1   MRFASIPAINYPHRLSRKLRSSANYSTSCALSSVNIIEDSHTNNRKYLDLQSRMQNYAAS 60

Query: 61  GDLAEALETLNSMRNVAGKPSVYDYNALFHRYLSSGNVLLEPLVQVYIGMKRFGPTPNKT 120
           GDL EALETLN M+NVAGKPSVYDYNALFHRYLSSGNV LE LVQVYIGMK FGP+PN+T
Sbjct: 61  GDLPEALETLNFMKNVAGKPSVYDYNALFHRYLSSGNVSLEQLVQVYIGMKNFGPSPNRT 120

Query: 121 TFNILLNGLMSSGYLRDAYFFAEEMTKSGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 180
           TFNILLNG +S GYLRDAYFFAEEMTKSG                               
Sbjct: 121 TFNILLNGFLSLGYLRDAYFFAEEMTKSGMNPSFTSLSKLLKSSMKSGNVVDSIWIFKFM 180

Query: 181 XKLDHLPTEPTLAMFVCMLCKARMLEEAYSFCAALLSKSFNFQAYVFNPVLWALCKFGQS 240
            +LDHLPTEPT+AMF+CMLCKARMLEEAY FCA L+SK+ NFQAYVFNPVLWALCK G S
Sbjct: 181 LRLDHLPTEPTVAMFICMLCKARMLEEAYRFCAKLISKNLNFQAYVFNPVLWALCKCGNS 240

Query: 241 FLALQLFYMMKKKGMTHNVCSYTALLYGFGRERLWVDLY 280
            LALQLFYMMKK G+ HNVCSYTALLYGFGRE LWVDLY
Sbjct: 241 SLALQLFYMMKKNGIPHNVCSYTALLYGFGRECLWVDLY 279

[Close]

BLAST of Cla97C08G156150.1 vs. TrEMBL
Match: tr|A0A2N9F0T1|A0A2N9F0T1_FAGSY (Uncharacterized protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS12468 PE=4 SV=1)

HSP 1 Score: 177.2 bits (448), Expect = 1.1e-40
Identity = 87/135 (64.44%), Postives = 106/135 (78.52%), Query Frame = 0


Query: 14  QLRRNVCFLMNYSSSCALSSLNIIEESNTQNWNYLELQSRMQNYAASGDLAEALETLNSM 73
           ++ + V FL+N SSSCA+ + + IEESNT + NY+ELQ RMQNYA SG  ++ALE LNSM
Sbjct: 8   RIGKTVRFLVNLSSSCAVRTADFIEESNTHHCNYVELQRRMQNYATSGHFSKALEALNSM 67

Query: 74  RNVAGKPSVYDYNALFHRYLSSGNVLLEPLVQVYIGMKRFGPTPNKTTFNILLNGLMSSG 133
           RNV GKP+VYDYNAL H Y  S NVLLE LV+VY+GMKRFGP PN +TFN LLNG++S G
Sbjct: 68  RNVHGKPTVYDYNALMHCYFKSRNVLLEVLVEVYLGMKRFGPVPNASTFNTLLNGMLSLG 127

Query: 134 YLRDAYFFAEEMTKS 149
            L+DA+F AEEM  S
Sbjct: 128 NLKDAFFIAEEMCGS 142

[Close]

BLAST of Cla97C08G156150.1 vs. TrEMBL
Match: tr|A0A2P4K714|A0A2P4K714_QUESU (Putative pentatricopeptide repeat-containing protein OS=Quercus suber OX=58331 GN=CFP56_25246 PE=4 SV=1)

HSP 1 Score: 175.6 bits (444), Expect = 3.2e-40
Identity = 86/143 (60.14%), Postives = 111/143 (77.62%), Query Frame = 0


Query: 6   IAAINHPHQLRRNVCFLMNYSSSCALSSLNIIEESNTQNWNYLELQSRMQNYAASGDLAE 65
           I  + +  ++ + V FL+++SSSCAL ++   EESNT ++NY +LQSRMQNYA SG   +
Sbjct: 62  IPRVGYCCRIGKTVRFLLSFSSSCALRAVEFAEESNTHDFNYAKLQSRMQNYAISGHFRK 121

Query: 66  ALETLNSMRNVAGKPSVYDYNALFHRYLSSGNVLLEPLVQVYIGMKRFGPTPNKTTFNIL 125
           ALETLNSMRNV GKP+VYDYNAL + +L S NVLLE LV+VY+GMKRFGP PN +TFN L
Sbjct: 122 ALETLNSMRNVPGKPTVYDYNALMYCHLKSRNVLLEVLVEVYVGMKRFGPAPNASTFNTL 181

Query: 126 LNGLMSSGYLRDAYFFAEEMTKS 149
           LNG++S G L+DA+F A+EM  S
Sbjct: 182 LNGMLSLGNLKDAFFIAKEMCGS 204

[Close]

BLAST of Cla97C08G156150.1 vs. TrEMBL
Match: tr|A0A124SBS2|A0A124SBS2_CYNCS (Uncharacterized protein OS=Cynara cardunculus var. scolymus OX=59895 GN=Ccrd_006461 PE=4 SV=1)

HSP 1 Score: 167.2 bits (422), Expect = 1.1e-37
Identity = 103/262 (39.31%), Postives = 139/262 (53.05%), Query Frame = 0


Query: 22  LMNYSSSCALSSLNIIEESNTQNWNYLELQSRMQNYAASGDLAEALETLNSMRNVAGKPS 81
           L + SSS  + SL++ EE N    NY EL+++MQN   SG + +ALE  + MRNV+GKP+
Sbjct: 3   LSSSSSSSVVQSLDMAEEDNPHCPNYGELRTKMQNLTRSGSIGKALEIFHLMRNVSGKPT 62

Query: 82  VYDYNALFHRYLSSGNVLLEPLVQVYIGMKRFGPTPNKTTFNILLNGLMSSGYLRDAYFF 141
           VYDYN+L + YL S  V L  L  +Y  MKR    PN +TFN  L GL   G  + A   
Sbjct: 63  VYDYNSLINCYLKSNKVGLHDLCGLYFEMKRVELHPNASTFNTFLKGLSLLGESKVAISV 122

Query: 142 AEEMTKSGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXKLDHLPTEPTLAMFVCMLCK 201
             EM   G                                 L+++PTEP + + +  L +
Sbjct: 123 IVEMCNYGFTPSFSCLSNLLKKCLDSMELVDGLRVLDLMLGLNYIPTEPKVILLINSLSR 182

Query: 202 ARMLEEAYSFCAALLSKSFNFQA-YVFNPVLWALCKFGQSFLALQLFYMMKKKGMTHNVC 261
             M  +A      LL    NFQ+ YV+NP+LW+LCK  Q   AL  F  +KKKG+ HNVC
Sbjct: 183 CGMTRDACVVFFKLLEIG-NFQSPYVYNPILWSLCKSDQISGALAFFCSLKKKGLVHNVC 242

Query: 262 SYTALLYGFGRERLWVDLYRCL 283
           SYTAL+YGFG++ L+ +   CL
Sbjct: 243 SYTALVYGFGQKGLFKEASGCL 263

[Close]

BLAST of Cla97C08G156150.1 vs. TrEMBL
Match: tr|A0A1U8B6S7|A0A1U8B6S7_NELNU (pentatricopeptide repeat-containing protein At3g53700, chloroplastic-like isoform X1 OS=Nelumbo nucifera OX=4432 GN=LOC104607632 PE=4 SV=1)

HSP 1 Score: 150.2 bits (378), Expect = 1.5e-32
Identity = 90/258 (34.88%), Postives = 135/258 (52.33%), Query Frame = 0


Query: 12  PHQLRRNVCFLMNYSSSCALSSLNIIE------ESNTQNWN-YLELQSRMQNYAASGDLA 71
           PH +   V  + + +++   + +   E       S +QN N +  LQ +M++YA  G   
Sbjct: 36  PHHIVNQVADIQSLAAALGSNEIEAQEFQEESSNSPSQNPNTFAALQCKMKDYATYGLAQ 95

Query: 72  EALETLNSMRNVAGKPSVYDYNALFHRYLSSGNVLLEPLVQVYIGMKRFGPTPNKTTFNI 131
           EA +TLN M+ V+GKP+VYDYNA  +  L SGN+ +E LV+V+  M+  GP+PN  TFN 
Sbjct: 96  EAWDTLNDMKRVSGKPTVYDYNAFLYYNLKSGNLSIEDLVEVHGRMRILGPSPNALTFNT 155

Query: 132 LLNGLMSSGYLRDAYFFAEEMTKSGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXKLD 191
           LLNG +S G L  A++F +EM ++G                                 LD
Sbjct: 156 LLNGSLSLGSLEGAFYFTKEMCRNGFVPSFSFLSKLLKRSLELGDLVYSLDALELMLDLD 215

Query: 192 HLPTEPTLAMFVCMLCKARMLEEAYSFCAALLSKSF-NFQAYVFNPVLWALCKFGQSFLA 251
           + PTEPT  + V    K+  + EA    + L  K F     + +N ++WALCK GQ+ +A
Sbjct: 216 YFPTEPTSNLLVNSFIKSGKMHEACFLLSLLSDKCFLPSMHHSYNSIIWALCKSGQTCVA 275

Query: 252 LQLFYMMKKKGMTHNVCS 262
             LF  +KK+G+ HNVC+
Sbjct: 276 SALFCSLKKRGIGHNVCT 293

[Close]

BLAST of Cla97C08G156150.1 vs. TrEMBL
Match: tr|A0A2I4GPB7|A0A2I4GPB7_9ROSI (pentatricopeptide repeat-containing protein At1g09900-like isoform X1 OS=Juglans regia OX=51240 GN=LOC109009621 PE=4 SV=1)

HSP 1 Score: 149.4 bits (376), Expect = 2.5e-32
Identity = 76/143 (53.15%), Postives = 101/143 (70.63%), Query Frame = 0


Query: 6   IAAINHPHQLRRNVCFLMNYSSSCALSSLNIIEESNTQNWNYLELQSRMQNYAASGDLAE 65
           I  +++ H++ R V F +N+SS CAL +++ IE+S  ++ +Y+EL  RMQNYA SG   +
Sbjct: 71  IPTVSYTHRIFRFVRFFVNFSSYCALRTVDFIEDSKARDSDYIELHRRMQNYATSGYFRK 130

Query: 66  ALETLNSMRNVAGKPSVYDYNALFHRYLSSGNVLLEPLVQVYIGMKRFGPTPNKTTFNIL 125
           ALE L SM NV GKP+VYD NAL + YL S N L E L++VYIGMKR GP PN  TFN+L
Sbjct: 131 ALEILISMGNVPGKPTVYDCNALMYCYLKSRNELFEELLEVYIGMKRIGPPPNALTFNML 190

Query: 126 LNGLMSSGYLRDAYFFAEEMTKS 149
           LN ++S G L+DA F A+EM  S
Sbjct: 191 LNRMLSLGKLKDALFIAKEMCGS 213

The following BLAST results are available for this feature:

BLAST of Cla97C08G156150.1 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_023002254.1	1.8e-111	72.08	pentatricopeptide repeat-containing protein At3g53700, chloroplastic-like isofor...	[more]
XP_022131368.1	2.4e-111	72.60	pentatricopeptide repeat-containing protein At1g09900-like [Momordica charantia]	[more]
XP_023522453.1	2.6e-110	71.38	pentatricopeptide repeat-containing protein At1g64583, mitochondrial-like isofor...	[more]
XP_023537059.1	2.6e-110	71.38	pentatricopeptide repeat-containing protein At1g09900-like [Cucurbita pepo subsp...	[more]
XP_022951234.1	1.6e-107	72.04	putative pentatricopeptide repeat-containing protein At1g12700, mitochondrial is...	[more]

BLAST of Cla97C08G156150.1 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A2N9F0T1\|A0A2N9F0T1_FAGSY	1.1e-40	64.44	Uncharacterized protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS12468 PE=4 SV=1	[more]
tr\|A0A2P4K714\|A0A2P4K714_QUESU	3.2e-40	60.14	Putative pentatricopeptide repeat-containing protein OS=Quercus suber OX=58331 G...	[more]
tr\|A0A124SBS2\|A0A124SBS2_CYNCS	1.1e-37	39.31	Uncharacterized protein OS=Cynara cardunculus var. scolymus OX=59895 GN=Ccrd_006...	[more]
tr\|A0A1U8B6S7\|A0A1U8B6S7_NELNU	1.5e-32	34.88	pentatricopeptide repeat-containing protein At3g53700, chloroplastic-like isofor...	[more]
tr\|A0A2I4GPB7\|A0A2I4GPB7_9ROSI	2.5e-32	53.15	pentatricopeptide repeat-containing protein At1g09900-like isoform X1 OS=Juglans...	[more]

BLAST of Cla97C08G156150.1 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of Cla97C08G156150.1 vs. TAIR10


Match Name	E-value	Identity	Description

Annotated Terms

The following terms have been associated with this mRNA:

Vocabulary: **Molecular Function**
Term	Definition
GO:0005515	protein binding

Vocabulary: **INTERPRO**
Term	Definition
IPR002885	Pentatricopeptide_repeat
IPR011990	TPR-like_helical_dom_sf

GO Annotation

GO Assignments

This mRNA is annotated with the following GO terms.

Category	Term Accession	Term Name
molecular_function	GO:0005515	protein binding

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
Cla97C08G156150	Cla97C08G156150	gene

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Cla97C08G156150.1.exon.1	Cla97C08G156150.1.exon.1	exon

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Cla97C08G156150.1.CDS.1	Cla97C08G156150.1.CDS.1	CDS

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
Cla97C08G156150.1	Cla97C08G156150.1-protein	polypeptide

InterPro

Analysis Name: InterPro Annotations of watermelon 97103 v2
Date Performed: 2019-05-12


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR011990	Tetratricopeptide-like helical domain superfamily	GENE3D	G3DSA:1.25.40.10		coord: 393..461 e-value: 5.3E-16 score: 60.6
IPR011990	Tetratricopeptide-like helical domain superfamily	GENE3D	G3DSA:1.25.40.10		coord: 219..392 e-value: 1.7E-39 score: 138.0 coord: 462..594 e-value: 3.0E-30 score: 107.6
IPR011990	Tetratricopeptide-like helical domain superfamily	GENE3D	G3DSA:1.25.40.10		coord: 28..218 e-value: 6.9E-23 score: 83.6
IPR002885	Pentatricopeptide repeat	PFAM	PF13041	PPR_2	coord: 292..340 e-value: 6.0E-14 score: 51.8 coord: 502..551 e-value: 1.2E-11 score: 44.4 coord: 398..446 e-value: 7.3E-15 score: 54.8
IPR002885	Pentatricopeptide repeat	PFAM	PF01535	PPR	coord: 365..395 e-value: 0.073 score: 13.3 coord: 470..500 e-value: 0.0022 score: 18.0
IPR002885	Pentatricopeptide repeat	TIGRFAM	TIGR00756	TIGR00756	coord: 400..433 e-value: 6.8E-8 score: 30.2 coord: 261..294 e-value: 2.5E-6 score: 25.3 coord: 540..573 e-value: 0.0018 score: 16.3 coord: 121..153 e-value: 0.0015 score: 16.6 coord: 435..457 e-value: 0.0017 score: 16.4 coord: 470..504 e-value: 5.2E-5 score: 21.2 coord: 295..328 e-value: 3.3E-6 score: 24.9
IPR002885	Pentatricopeptide repeat	PFAM	PF13812	PPR_3	coord: 220..270 e-value: 7.1E-4 score: 19.5 coord: 79..127 e-value: 1.3E-4 score: 21.9
IPR002885	Pentatricopeptide repeat	PROSITE	PS51375	PPR	coord: 398..432 score: 11.992
IPR002885	Pentatricopeptide repeat	PROSITE	PS51375	PPR	coord: 538..572 score: 10.293
IPR002885	Pentatricopeptide repeat	PROSITE	PS51375	PPR	coord: 433..467 score: 7.837
IPR002885	Pentatricopeptide repeat	PROSITE	PS51375	PPR	coord: 328..362 score: 9.109
IPR002885	Pentatricopeptide repeat	PROSITE	PS51375	PPR	coord: 81..117 score: 7.366
IPR002885	Pentatricopeptide repeat	PROSITE	PS51375	PPR	coord: 258..292 score: 10.084
IPR002885	Pentatricopeptide repeat	PROSITE	PS51375	PPR	coord: 46..80 score: 6.5
IPR002885	Pentatricopeptide repeat	PROSITE	PS51375	PPR	coord: 153..187 score: 6.325
IPR002885	Pentatricopeptide repeat	PROSITE	PS51375	PPR	coord: 468..502 score: 11.071
IPR002885	Pentatricopeptide repeat	PROSITE	PS51375	PPR	coord: 188..222 score: 6.051
IPR002885	Pentatricopeptide repeat	PROSITE	PS51375	PPR	coord: 363..397 score: 9.251
IPR002885	Pentatricopeptide repeat	PROSITE	PS51375	PPR	coord: 223..257 score: 8.451
IPR002885	Pentatricopeptide repeat	PROSITE	PS51375	PPR	coord: 573..594 score: 5.59
IPR002885	Pentatricopeptide repeat	PROSITE	PS51375	PPR	coord: 503..537 score: 9.076
IPR002885	Pentatricopeptide repeat	PROSITE	PS51375	PPR	coord: 293..327 score: 11.466
IPR002885	Pentatricopeptide repeat	PROSITE	PS51375	PPR	coord: 118..152 score: 10.654
None	No IPR available	PANTHER	PTHR44149	FAMILY NOT NAMED	coord: 56..184
None	No IPR available	PANTHER	PTHR44149:SF1	SUBFAMILY NOT NAMED	coord: 243..434 coord: 143..271
None	No IPR available	PANTHER	PTHR44149:SF1	SUBFAMILY NOT NAMED	coord: 56..184
None	No IPR available	PANTHER	PTHR44149:SF1	SUBFAMILY NOT NAMED	coord: 407..592
None	No IPR available	PANTHER	PTHR44149	FAMILY NOT NAMED	coord: 243..434 coord: 143..271
None	No IPR available	PANTHER	PTHR44149	FAMILY NOT NAMED	coord: 407..592