Cla97C08G152760.1 (mRNA) Watermelon (97103) v2 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Cla97C08G152760.1
Type	mRNA
Organism	Citrullus lanatus (Watermelon (97103) v2)
Description	Ankyrin repeat family protein
Location	Cla97Chr08 : 21146801 .. 21147229 (+)
Sequence length	429

Genome Viewer

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGTAGCAACAACGTTCATTGCAGCCATGGCTTTCCAAGCTGGGACGAACCCTCCCGGCGGCGTATGGCAAGACGATGACAACCCAAACTACGAAGCAGGCAAATCCATAATGGCTACAAAATCTCCTCAATTCATCAATTTCATGAGCGGCTTTACAGTATGTTTTGCATGCTCAGCGATGCAATTTATGGTCTTGTTGGATAAGTCATCTGGCAAAACTTGGTCGGTTTTTAGGAGTTTTCTTTACTTCACGATGGGCTCTGCAATATCATCCATCATTGTTGCTTATTGGTCCGTCATAAAAGCTTTAACGCCTGACGCTCAAATGTCTCATGTCATTGTTATGCTCAAAACCACCCTTCTACTTACACTTGTTTTGCTGCCAATTTCAATGTATATAGAGAAGAGACGACTTACGTCTCGTTAG

mRNA sequence

ATGGTAGCAACAACGTTCATTGCAGCCATGGCTTTCCAAGCTGGGACGAACCCTCCCGGCGGCGTATGGCAAGACGATGACAACCCAAACTACGAAGCAGGCAAATCCATAATGGCTACAAAATCTCCTCAATTCATCAATTTCATGAGCGGCTTTACAGTATGTTTTGCATGCTCAGCGATGCAATTTATGGTCTTGTTGGATAAGTCATCTGGCAAAACTTGGTCGGTTTTTAGGAGTTTTCTTTACTTCACGATGGGCTCTGCAATATCATCCATCATTGTTGCTTATTGGTCCGTCATAAAAGCTTTAACGCCTGACGCTCAAATGTCTCATGTCATTGTTATGCTCAAAACCACCCTTCTACTTACACTTGTTTTGCTGCCAATTTCAATGTATATAGAGAAGAGACGACTTACGTCTCGTTAG

Coding sequence (CDS)

ATGGTAGCAACAACGTTCATTGCAGCCATGGCTTTCCAAGCTGGGACGAACCCTCCCGGCGGCGTATGGCAAGACGATGACAACCCAAACTACGAAGCAGGCAAATCCATAATGGCTACAAAATCTCCTCAATTCATCAATTTCATGAGCGGCTTTACAGTATGTTTTGCATGCTCAGCGATGCAATTTATGGTCTTGTTGGATAAGTCATCTGGCAAAACTTGGTCGGTTTTTAGGAGTTTTCTTTACTTCACGATGGGCTCTGCAATATCATCCATCATTGTTGCTTATTGGTCCGTCATAAAAGCTTTAACGCCTGACGCTCAAATGTCTCATGTCATTGTTATGCTCAAAACCACCCTTCTACTTACACTTGTTTTGCTGCCAATTTCAATGTATATAGAGAAGAGACGACTTACGTCTCGTTAG

Protein sequence

MVATTFIAAMAFQAGTNPPGGVWQDDDNPNYEAGKSIMATKSPQFINFMSGFTVCFACSAMQFMVLLDKSSGKTWSVFRSFLYFTMGSAISSIIVAYWSVIKALTPDAQMSHVIVMLKTTLLLTLVLLPISMYIEKRRLTSR

Homology

[Close]

BLAST of Cla97C08G152760.1 vs. NCBI nr
Match: XP_016899921.1 (PREDICTED: uncharacterized protein LOC107990705 [Cucumis melo])

HSP 1 Score: 230.3 bits (586), Expect = 4.0e-57
Identity = 119/143 (83.22%), Postives = 134/143 (93.71%), Query Frame = 0


Query: 1   MVATTFIAAMAFQAGTNPPGGVWQDDDNPNYEAGKSIMATKSPQ-FINFMSGFTVCFACS 60
           MVATTFIAAMAFQAGTNPPGGVWQDD++PNYEAGKSIMATKSP  FI+FMSG TVCFACS
Sbjct: 44  MVATTFIAAMAFQAGTNPPGGVWQDDNSPNYEAGKSIMATKSPSLFISFMSGVTVCFACS 103

Query: 61  AMQFMVLLDKSSGKTWSVFRSFLYFTMGSAISSIIVAYWSVIKALTPDAQMSHVIVMLKT 120
           AMQF+VLL KSS K+WSV +SF+YFTMGS IS+I+VAYWS IKALTP+AQMSHVIVMLKT
Sbjct: 104 AMQFIVLLGKSSEKSWSVSKSFIYFTMGSGISAIVVAYWSAIKALTPEAQMSHVIVMLKT 163

Query: 121 TLLLTLVLLPISMYIEKRRLTSR 143
           TL+L++V+LPISMYIEK+RL SR
Sbjct: 164 TLVLSVVVLPISMYIEKKRLASR 186

[Close]

BLAST of Cla97C08G152760.1 vs. NCBI nr
Match: XP_011657373.1 (PREDICTED: uncharacterized protein LOC105435852 [Cucumis sativus] >KGN47597.1 hypothetical protein Csa_6G363530 [Cucumis sativus])

HSP 1 Score: 115.2 bits (287), Expect = 1.9e-22
Identity = 73/141 (51.77%), Postives = 90/141 (63.83%), Query Frame = 0


Query: 1   MVATTFIAAMAFQAGTNPPGGVWQDDDNP-NYEAGKSIMATKSP-QFINFMSGFTVCFAC 60
           MV TTFIA +AFQ GTNPPGGVWQ+DD    Y AGKSIMATKSP  FI F+   T CF  
Sbjct: 44  MVVTTFIATVAFQIGTNPPGGVWQEDDKQGKYFAGKSIMATKSPSDFIGFLVTITACFVF 103

Query: 61  SAMQFMVLLDKS---SGKTWSVFRSFLYFTMGSAISSIIVAYWSVIKALTPDAQMSHVIV 120
           SAMQF VL  K      K WS  R  LY TMG A+SS+  AY   ++A TPD++ + + V
Sbjct: 104 SAMQFAVLFLKKWPVGAKNWSFSRFILYSTMGLAVSSMGFAYGCSVRAYTPDSEENTLFV 163

Query: 121 MLKTTLL-LTLVLLPISMYIE 136
           +   T+L   + L  IS+Y++
Sbjct: 164 ISFITMLGFPISLAAISIYLQ 184

[Close]

BLAST of Cla97C08G152760.1 vs. NCBI nr
Match: XP_008445596.1 (PREDICTED: uncharacterized protein LOC103488576 [Cucumis melo])

HSP 1 Score: 113.6 bits (283), Expect = 5.4e-22
Identity = 72/141 (51.06%), Postives = 88/141 (62.41%), Query Frame = 0


Query: 1   MVATTFIAAMAFQAGTNPPGGVWQDDDNP-NYEAGKSIMATKSP-QFINFMSGFTVCFAC 60
           MV TTFIA +AFQ GTNPPGGVWQ+DD    Y AGKSIMATKSP  F  ++   T CF  
Sbjct: 42  MVVTTFIATVAFQIGTNPPGGVWQEDDKQGKYFAGKSIMATKSPSDFSGYLVTITACFVF 101

Query: 61  SAMQFMVLLDKS---SGKTWSVFRSFLYFTMGSAISSIIVAYWSVIKALTPDA-QMSHVI 120
           SAMQF VL  K      K WS  R  LY TMG AISS+ +AY   ++A TPD+ + +  +
Sbjct: 102 SAMQFAVLFLKKWPVGAKNWSFSRFILYSTMGLAISSMGIAYGCSVRAYTPDSEEKTRYV 161

Query: 121 VMLKTTLLLTLVLLPISMYIE 136
           +   T L   + L  IS+Y+E
Sbjct: 162 ISFITMLGFPIGLAAISLYLE 182

[Close]

BLAST of Cla97C08G152760.1 vs. NCBI nr
Match: XP_004144205.1 (PREDICTED: uncharacterized protein LOC101208645 [Cucumis sativus] >KGN47594.1 hypothetical protein Csa_6G363010 [Cucumis sativus])

HSP 1 Score: 104.0 bits (258), Expect = 4.3e-19
Identity = 62/143 (43.36%), Postives = 94/143 (65.73%), Query Frame = 0


Query: 1   MVATTFIAAMAFQAGTNPPGGVWQDDDNPNYEAGKSIMATKSP-QFINFMSGFTVCFACS 60
           MV  TFI  ++FQAGTNPPGGVWQ+      EAGKSIMA+K+P QF+ F+ G TV    S
Sbjct: 35  MVIITFIGTISFQAGTNPPGGVWQEGP----EAGKSIMASKNPSQFVVFIVGVTVGMVLS 94

Query: 61  AMQFMVLLDKSSGKTWSVFRSFLYFTMGSAISSIIVAYWSVIKALTPDAQMSHVIVMLKT 120
           A Q + L+++      S  R+F+Y ++G  I+++  AYWS + ALTP + +  V ++L T
Sbjct: 95  AAQLLTLMNELPYNKLSDSRNFIYCSLGITITALGFAYWSSLTALTPSSMILEVRIVLIT 154

Query: 121 TLLLTLVLLPISMYIEKRRLTSR 143
            L + +V++ I +YI+K+ + S+
Sbjct: 155 ELSIGVVIVAIIVYIQKKDVCSK 173

[Close]

BLAST of Cla97C08G152760.1 vs. NCBI nr
Match: XP_004144204.1 (PREDICTED: uncharacterized protein LOC101208403 [Cucumis sativus] >KGN47596.1 hypothetical protein Csa_6G363520 [Cucumis sativus])

HSP 1 Score: 103.2 bits (256), Expect = 7.4e-19
Identity = 62/132 (46.97%), Postives = 88/132 (66.67%), Query Frame = 0


Query: 1   MVATTFIAAMAFQAGTNPPGGVWQDDDNPNYEAGKSIMATKSP-QFINFMSGFTVCFACS 60
           MV  TFIAA+AFQ G NPPG VWQ+D N  + AGKSIMA+KSP ++  FM+G T+C   S
Sbjct: 43  MVVVTFIAAVAFQVGINPPGSVWQEDKN-GFTAGKSIMASKSPSEYKKFMAGVTLCLGFS 102

Query: 61  AMQFMVLLDKSSGKTWSVFRSFLYFTMGSAISSIIVAYWSVIKALTPDAQ-MSHVIVMLK 120
            +Q  V+L +   K++SV R  +Y  M   I+ +IV++W+ +KALTPD + MS +   + 
Sbjct: 103 LIQLCVMLFRWYLKSYSVRRMIMYILMLCTIAPMIVSFWASVKALTPDEKLMSEITATIW 162

Query: 121 TTLLLTLVLLPI 131
           + L + L+ LPI
Sbjct: 163 SILGVYLISLPI 173

[Close]

BLAST of Cla97C08G152760.1 vs. TrEMBL
Match: tr|A0A1S4DVA8|A0A1S4DVA8_CUCME (uncharacterized protein LOC107990705 OS=Cucumis melo OX=3656 GN=LOC107990705 PE=4 SV=1)

HSP 1 Score: 230.3 bits (586), Expect = 2.6e-57
Identity = 119/143 (83.22%), Postives = 134/143 (93.71%), Query Frame = 0


Query: 1   MVATTFIAAMAFQAGTNPPGGVWQDDDNPNYEAGKSIMATKSPQ-FINFMSGFTVCFACS 60
           MVATTFIAAMAFQAGTNPPGGVWQDD++PNYEAGKSIMATKSP  FI+FMSG TVCFACS
Sbjct: 44  MVATTFIAAMAFQAGTNPPGGVWQDDNSPNYEAGKSIMATKSPSLFISFMSGVTVCFACS 103

Query: 61  AMQFMVLLDKSSGKTWSVFRSFLYFTMGSAISSIIVAYWSVIKALTPDAQMSHVIVMLKT 120
           AMQF+VLL KSS K+WSV +SF+YFTMGS IS+I+VAYWS IKALTP+AQMSHVIVMLKT
Sbjct: 104 AMQFIVLLGKSSEKSWSVSKSFIYFTMGSGISAIVVAYWSAIKALTPEAQMSHVIVMLKT 163

Query: 121 TLLLTLVLLPISMYIEKRRLTSR 143
           TL+L++V+LPISMYIEK+RL SR
Sbjct: 164 TLVLSVVVLPISMYIEKKRLASR 186

[Close]

BLAST of Cla97C08G152760.1 vs. TrEMBL
Match: tr|A0A0A0KGU1|A0A0A0KGU1_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G363530 PE=4 SV=1)

HSP 1 Score: 115.2 bits (287), Expect = 1.2e-22
Identity = 73/141 (51.77%), Postives = 90/141 (63.83%), Query Frame = 0


Query: 1   MVATTFIAAMAFQAGTNPPGGVWQDDDNP-NYEAGKSIMATKSP-QFINFMSGFTVCFAC 60
           MV TTFIA +AFQ GTNPPGGVWQ+DD    Y AGKSIMATKSP  FI F+   T CF  
Sbjct: 44  MVVTTFIATVAFQIGTNPPGGVWQEDDKQGKYFAGKSIMATKSPSDFIGFLVTITACFVF 103

Query: 61  SAMQFMVLLDKS---SGKTWSVFRSFLYFTMGSAISSIIVAYWSVIKALTPDAQMSHVIV 120
           SAMQF VL  K      K WS  R  LY TMG A+SS+  AY   ++A TPD++ + + V
Sbjct: 104 SAMQFAVLFLKKWPVGAKNWSFSRFILYSTMGLAVSSMGFAYGCSVRAYTPDSEENTLFV 163

Query: 121 MLKTTLL-LTLVLLPISMYIE 136
           +   T+L   + L  IS+Y++
Sbjct: 164 ISFITMLGFPISLAAISIYLQ 184

[Close]

BLAST of Cla97C08G152760.1 vs. TrEMBL
Match: tr|A0A1S3BD33|A0A1S3BD33_CUCME (uncharacterized protein LOC103488576 OS=Cucumis melo OX=3656 GN=LOC103488576 PE=4 SV=1)

HSP 1 Score: 113.6 bits (283), Expect = 3.6e-22
Identity = 72/141 (51.06%), Postives = 88/141 (62.41%), Query Frame = 0


Query: 1   MVATTFIAAMAFQAGTNPPGGVWQDDDNP-NYEAGKSIMATKSP-QFINFMSGFTVCFAC 60
           MV TTFIA +AFQ GTNPPGGVWQ+DD    Y AGKSIMATKSP  F  ++   T CF  
Sbjct: 42  MVVTTFIATVAFQIGTNPPGGVWQEDDKQGKYFAGKSIMATKSPSDFSGYLVTITACFVF 101

Query: 61  SAMQFMVLLDKS---SGKTWSVFRSFLYFTMGSAISSIIVAYWSVIKALTPDA-QMSHVI 120
           SAMQF VL  K      K WS  R  LY TMG AISS+ +AY   ++A TPD+ + +  +
Sbjct: 102 SAMQFAVLFLKKWPVGAKNWSFSRFILYSTMGLAISSMGIAYGCSVRAYTPDSEEKTRYV 161

Query: 121 VMLKTTLLLTLVLLPISMYIE 136
           +   T L   + L  IS+Y+E
Sbjct: 162 ISFITMLGFPIGLAAISLYLE 182

[Close]

BLAST of Cla97C08G152760.1 vs. TrEMBL
Match: tr|A0A0A0KFJ5|A0A0A0KFJ5_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G363010 PE=4 SV=1)

HSP 1 Score: 104.0 bits (258), Expect = 2.9e-19
Identity = 62/143 (43.36%), Postives = 94/143 (65.73%), Query Frame = 0


Query: 1   MVATTFIAAMAFQAGTNPPGGVWQDDDNPNYEAGKSIMATKSP-QFINFMSGFTVCFACS 60
           MV  TFI  ++FQAGTNPPGGVWQ+      EAGKSIMA+K+P QF+ F+ G TV    S
Sbjct: 35  MVIITFIGTISFQAGTNPPGGVWQEGP----EAGKSIMASKNPSQFVVFIVGVTVGMVLS 94

Query: 61  AMQFMVLLDKSSGKTWSVFRSFLYFTMGSAISSIIVAYWSVIKALTPDAQMSHVIVMLKT 120
           A Q + L+++      S  R+F+Y ++G  I+++  AYWS + ALTP + +  V ++L T
Sbjct: 95  AAQLLTLMNELPYNKLSDSRNFIYCSLGITITALGFAYWSSLTALTPSSMILEVRIVLIT 154

Query: 121 TLLLTLVLLPISMYIEKRRLTSR 143
            L + +V++ I +YI+K+ + S+
Sbjct: 155 ELSIGVVIVAIIVYIQKKDVCSK 173

[Close]

BLAST of Cla97C08G152760.1 vs. TrEMBL
Match: tr|A0A0A0KIL3|A0A0A0KIL3_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G363520 PE=4 SV=1)

HSP 1 Score: 103.2 bits (256), Expect = 4.9e-19
Identity = 62/132 (46.97%), Postives = 88/132 (66.67%), Query Frame = 0


Query: 1   MVATTFIAAMAFQAGTNPPGGVWQDDDNPNYEAGKSIMATKSP-QFINFMSGFTVCFACS 60
           MV  TFIAA+AFQ G NPPG VWQ+D N  + AGKSIMA+KSP ++  FM+G T+C   S
Sbjct: 43  MVVVTFIAAVAFQVGINPPGSVWQEDKN-GFTAGKSIMASKSPSEYKKFMAGVTLCLGFS 102

Query: 61  AMQFMVLLDKSSGKTWSVFRSFLYFTMGSAISSIIVAYWSVIKALTPDAQ-MSHVIVMLK 120
            +Q  V+L +   K++SV R  +Y  M   I+ +IV++W+ +KALTPD + MS +   + 
Sbjct: 103 LIQLCVMLFRWYLKSYSVRRMIMYILMLCTIAPMIVSFWASVKALTPDEKLMSEITATIW 162

Query: 121 TTLLLTLVLLPI 131
           + L + L+ LPI
Sbjct: 163 SILGVYLISLPI 173

The following BLAST results are available for this feature:

BLAST of Cla97C08G152760.1 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_016899921.1	4.0e-57	83.22	PREDICTED: uncharacterized protein LOC107990705 [Cucumis melo]	[more]
XP_011657373.1	1.9e-22	51.77	PREDICTED: uncharacterized protein LOC105435852 [Cucumis sativus] >KGN47597.1 hy...	[more]
XP_008445596.1	5.4e-22	51.06	PREDICTED: uncharacterized protein LOC103488576 [Cucumis melo]	[more]
XP_004144205.1	4.3e-19	43.36	PREDICTED: uncharacterized protein LOC101208645 [Cucumis sativus] >KGN47594.1 hy...	[more]
XP_004144204.1	7.4e-19	46.97	PREDICTED: uncharacterized protein LOC101208403 [Cucumis sativus] >KGN47596.1 hy...	[more]

BLAST of Cla97C08G152760.1 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A1S4DVA8\|A0A1S4DVA8_CUCME	2.6e-57	83.22	uncharacterized protein LOC107990705 OS=Cucumis melo OX=3656 GN=LOC107990705 PE=...	[more]
tr\|A0A0A0KGU1\|A0A0A0KGU1_CUCSA	1.2e-22	51.77	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G363530 PE=4 SV=1	[more]
tr\|A0A1S3BD33\|A0A1S3BD33_CUCME	3.6e-22	51.06	uncharacterized protein LOC103488576 OS=Cucumis melo OX=3656 GN=LOC103488576 PE=...	[more]
tr\|A0A0A0KFJ5\|A0A0A0KFJ5_CUCSA	2.9e-19	43.36	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G363010 PE=4 SV=1	[more]
tr\|A0A0A0KIL3\|A0A0A0KIL3_CUCSA	4.9e-19	46.97	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G363520 PE=4 SV=1	[more]

BLAST of Cla97C08G152760.1 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of Cla97C08G152760.1 vs. TAIR10


Match Name	E-value	Identity	Description

Annotated Terms

The following terms have been associated with this mRNA:

Vocabulary: **INTERPRO**
Term	Definition
IPR026961	PGG_dom

GO Annotation

GO Assignments

This mRNA is annotated with the following GO terms.

Category	Term Accession	Term Name
cellular_component	GO:0016021	integral component of membrane
cellular_component	GO:0016020	membrane

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
Cla97C08G152760	Cla97C08G152760	gene

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Cla97C08G152760.1.exon.1	Cla97C08G152760.1.exon.1	exon

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Cla97C08G152760.1.CDS.1	Cla97C08G152760.1.CDS.1	CDS

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
Cla97C08G152760.1	Cla97C08G152760.1-protein	polypeptide

InterPro

Analysis Name: InterPro Annotations of watermelon 97103 v2
Date Performed: 2019-05-12


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR026961	PGG domain	PFAM	PF13962	PGG	coord: 1..99 e-value: 2.3E-16 score: 59.6
None	No IPR available	PANTHER	PTHR24177:SF110	SUBFAMILY NOT NAMED	coord: 1..128
None	No IPR available	PANTHER	PTHR24177	FAMILY NOT NAMED	coord: 1..128