Cla97C06G119270.1 (mRNA) Watermelon (97103) v2

Overview
NameCla97C06G119270.1
TypemRNA
OrganismCitrullus lanatus (Watermelon (97103) v2)
DescriptionUnknown protein
LocationCla97Chr06 : 18084636 .. 18087470 (-)
Sequence length273
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDSexon
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGATGGGTGAGAAGGCTGTCCCATGTATCAGAAAATGGTGTTCAAGATTCCATATGAGCCGCCCACATCAAATTCTCCCCCTCCCCCTTTCTTCAAGAGAAAAAAAAAAAAAAATTAATAATTTAATTACCACATCACTTCCACCACAATTTCTTTCTTCTCTTCCACTTGGACTTGTGTTTGTAGTTGGCTCCTTTTTTCTGTTTTCCTTTCTCTCCTTTCCCCCATTTCTCTCCATCTCCAACAAGATTTTAGCATGCCTTAGATTGCTCCTTCAGTTTCTACTCTTCTCCGGTTCTCCTCTACAAATTGCTGCACCACGGTACATCATTTACCTTGCGTTTCCCTTTCCCTTTCCCTTTCCCTTTCCCTTTCTCCGATTTCCTGATTTTCCCTTTTCTTTTCTCTTAGATTTTCTTGTGTTTTCAGGTATGTTGCTCTGGACTTGATTTCTATGTTCACTTTTGTTTCTGTTTTACTTCAATCTATTATAATTAGGAATACAATCTTCTATTGTCACTGATTTTTCATGTGTGCTCTGCATTTTCTTGCTAGAAATCTCAGCTTTTTTTTTCTGCTCGCATCGTCTTTCTTTCGATATGATTGTTGTGATTAAGCGTACACATCTTGATTTTGAATCTCTCTCACTCTCTCTCTGTGTTTGTGTGTGTGTGTGTGGGTTTTTTTTCCTAGTTATTGAGTTGAGATGTATCGTTGAAGATCTAGAAAACGGGATCCTTTCATTATTTTTTATTTGCATGATTAAGCCCTGTTTGTACCCAAGAGTTTATTTTCTTGATTTTCTGTGGGAGTGCAAATAGTGATTCGTGTCGCCTATTCTGATTGAAGGGGGTTGACTTCATTTCTATTATTCGCTGGTGTACGATTTGAGTGACGTTCCGTTTTCTTTTCGGTTAAGAAAACCTACCCCAAGCCTAATTTTTATCAAAAAAATATTTACGCATACTTGGTGGGTTGTTACTTTATGCTTTCAGATCATTTTGAGGTGACATGCTTTGATGCTAATCAGTGATAGCGGTAAATATGAAAGGAAATTAGGAACTAGAACAGGTTTGCCGCCGAAGAATCCTTACTGCACTTTAAAATTATTGAGTCTTGTGTTCTTTTTGATCAAGAAATTAGGAGCGGTGTAGAAAAAGTTTTTGTCAAGAACATGAACGAACAAAATCTAAGGAGAGACTCAAGAAAAAGATGGAAAGAAAAGGGTTTAACACGGGGGACACCCTCACAAAACAATTATAAAAATGGCTCCCAACTTTTGGTAACCAAAAACAAAGGATAATTACAGAGTAGAGAGCCCATGGAAAAGTATTGGAAAATATTACAATCCAAATCCACACATACTCCCATGAACTATCTTTTCCGAGGAACACGTCTATTCCTTTCTGCTATATAAACCAAAAAATAGCCAAGGAACTGGCCTGCCAAAGAACCGGATCCCTTCCCCGGAAAGGAGGATCTGCTACCTCTACTACTGCTTCTTGGATGTTCATCTTTGAATGAAGGCTAAACTGAACTCTTACCTAAAGCATTTTCAAACTCTAGCCGATTAGAAGTATAACCACAAAAGACGATTCACAATTTCTGCATAAAATCAGAAGTAATAGTCCTCCCCAAAGAAACACAATTCAAGGTTTGTTATTATTATTTTTGTAGGGGACATGATCGAGATTTTATTTACGAGGAAGAATAAAAGAAAGGGTTCTTTCCACCCAAATATCTATGAGAACTTTTGAGAAAGATTCCAATCATGTTAGTTTGCATTTTCTAGGTAGTATAATATTACAGTTTGGTTTCTGAATATCCTTCTTGCAATCTGAGTGATAATTTTGTATCCTATAACACTTAAAATTGTTGCTAATAAACAGGGACATGTCATATAGTGCACTATAGGCGTATCAATGAAAAATATTATAAGAAAATGTAATTGAAGTGTACAAGACTAAAATTGTTACTGAAGTTGGATGCTTAAAAGTTGACAAACAAATTGGTATCATTTCAATAATCATATCAAGTTTAACTCATTATCTACAGTATGCCATCTGCATGGTATCATTTCAATAATCATATTAAGCTTAACTAATTATTTACATCAGCAAAAGTGCATCTGCTTCGAGTTAGTTGTTGTATTGTTCTATTTCTTTTTATTTTACCCTCTTCGCTGCTTGCTTTCTCATCTGCTTAGTCATTAGTATTCTCTTACTTTTCTGTTGCATCCACGTGACTTAAAGAGACTTTGACCACATCTACCATGTGTCCAAATGTGTTTACAATGTATATGCATTGAAGTTGATATATAATTGTTTGTCCATTTATGAAGTTGTAAAGAAGCAACAATCATAAATAAAAAGGTCCAAAGTAATGTTTCTGCGTGTGTTTGGAGTTGTGAATTGATATGTTATAAGAAGTTCCTCCATTGCCATTCTTAAAGCATGTAACCAATCAATTAATTGTTTGCATTTAACTTAAATTTTGGACAAGCATCCTGCCACAGCACTCATTTCAGATTCGTAATTATGTTTCTGTCCATAACTTTATATATGTTTCAGAAAGTTGGGATGTAGAACTTGTGACATTTTTCTGTAATGTTCTCCGAATTGTATTCACAGTAGTCATGTGATTGGAGGTTTATTTTAAAGCATTCTTCCTGACATCTACTTCAAATTCCTCTTTGCTTCGACAGTACATACCATCCTGCTATTGTTGTGTCCGACAATGCGTGTGAATTGATGGAGAGGCATCTTTTCATTGAAATTGGTCGTGTGAACTGTCTTATAAGATGTACTACTTTCAGGGTTCATGAAGCTGAATGA

mRNA sequence

ATGATGGTTGGCTCCTTTTTTCTGTTTTCCTTTCTCTCCTTTCCCCCATTTCTCTCCATCTCCAACAAGATTTTAGCATGCCTTAGATTGCTCCTTCAGTTTCTACTCTTCTCCGGTTCTCCTCTACAAATTGCTGCACCACGTACATACCATCCTGCTATTGTTGTGTCCGACAATGCGTGTGAATTGATGGAGAGGCATCTTTTCATTGAAATTGGTCGTGTGAACTGTCTTATAAGATGTACTACTTTCAGGGTTCATGAAGCTGAATGA

Coding sequence (CDS)

ATGATGGTTGGCTCCTTTTTTCTGTTTTCCTTTCTCTCCTTTCCCCCATTTCTCTCCATCTCCAACAAGATTTTAGCATGCCTTAGATTGCTCCTTCAGTTTCTACTCTTCTCCGGTTCTCCTCTACAAATTGCTGCACCACGTACATACCATCCTGCTATTGTTGTGTCCGACAATGCGTGTGAATTGATGGAGAGGCATCTTTTCATTGAAATTGGTCGTGTGAACTGTCTTATAAGATGTACTACTTTCAGGGTTCATGAAGCTGAATGA

Protein sequence

MMVGSFFLFSFLSFPPFLSISNKILACLRLLLQFLLFSGSPLQIAAPRTYHPAIVVSDNACELMERHLFIEIGRVNCLIRCTTFRVHEAE
Homology
[Close]
BLAST of Cla97C06G119270.1 vs. NCBI nr
Match: KGN61437.1 (hypothetical protein Csa_2G122010 [Cucumis sativus])

HSP 1 Score: 82.8 bits (203), Expect = 6.5e-13
Identity = 49/87 (56.32%), Postives = 55/87 (63.22%), Query Frame = 0 

Query: 5   SFFLFSFLSFPPFLS-ISNKILACLRLLLQFLLFSGSPLQIAAPRTYHPAIVVSDNACEL 64
           SF LFS ++ PP LS +SNK+  CLRLLL FLLF                    +N  EL
Sbjct: 20  SFSLFSPIALPPSLSNLSNKVSTCLRLLLYFLLFPXXXXXXXXXXXXXXXXXXXNNEFEL 79

Query: 65  MERHLFIEIGRVNCLIRCTTFRVHEAE 91
           MERH FI+IGRVNCLIRCTTFRV EAE
Sbjct: 80  MERHHFIDIGRVNCLIRCTTFRVDEAE 106

[Close]
BLAST of Cla97C06G119270.1 vs. TrEMBL
Match: tr|A0A0A0LL18|A0A0A0LL18_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G122010 PE=4 SV=1)

HSP 1 Score: 82.8 bits (203), Expect = 4.3e-13
Identity = 49/87 (56.32%), Postives = 55/87 (63.22%), Query Frame = 0 

Query: 5   SFFLFSFLSFPPFLS-ISNKILACLRLLLQFLLFSGSPLQIAAPRTYHPAIVVSDNACEL 64
           SF LFS ++ PP LS +SNK+  CLRLLL FLLF                    +N  EL
Sbjct: 20  SFSLFSPIALPPSLSNLSNKVSTCLRLLLYFLLFPXXXXXXXXXXXXXXXXXXXNNEFEL 79

Query: 65  MERHLFIEIGRVNCLIRCTTFRVHEAE 91
           MERH FI+IGRVNCLIRCTTFRV EAE
Sbjct: 80  MERHHFIDIGRVNCLIRCTTFRVDEAE 106

The following BLAST results are available for this feature:
BLAST of Cla97C06G119270.1 vs. NCBI nr
Match NameE-valueIdentityDescription
KGN61437.16.5e-1356.32hypothetical protein Csa_2G122010 [Cucumis sativus][more]
BLAST of Cla97C06G119270.1 vs. TrEMBL
Match NameE-valueIdentityDescription
tr|A0A0A0LL18|A0A0A0LL18_CUCSA4.3e-1356.32Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G122010 PE=4 SV=1[more]
BLAST of Cla97C06G119270.1 vs. Swiss-Prot
Match NameE-valueIdentityDescription
BLAST of Cla97C06G119270.1 vs. TAIR10
Match NameE-valueIdentityDescription
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameType
Cla97C06G119270Cla97C06G119270gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameType
Cla97C06G119270.1Cla97C06G119270.1-proteinpolypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameType
Cla97C06G119270.1.CDS.3Cla97C06G119270.1.CDS.3CDS
Cla97C06G119270.1.CDS.2Cla97C06G119270.1.CDS.2CDS
Cla97C06G119270.1.CDS.1Cla97C06G119270.1.CDS.1CDS


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameType
Cla97C06G119270.1.exon.3Cla97C06G119270.1.exon.3exon
Cla97C06G119270.1.exon.2Cla97C06G119270.1.exon.2exon
Cla97C06G119270.1.exon.1Cla97C06G119270.1.exon.1exon