Cla97C04G072720.1 (mRNA) Watermelon (97103) v2 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Cla97C04G072720.1
Type	mRNA
Organism	Citrullus lanatus (Watermelon (97103) v2)
Description	NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 1
Location	Cla97Chr04 : 20055134 .. 20055473 (-)
Sequence length	201

Genome Viewer

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDSexon

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGGATGGAGATGGCTGGAAGCGGCACTTCCTCTGGGAATTATCGCCGGAATGCTCTGTATAATGGGAAATGCTCAATATCACATCCACAAAGCCGCCCATGGACGGGTAATTTACTTTGTACTGCTTTTGATTTTAGCGTTTTCCCCTTTTCTTTGCTCAATGGATCTCCTTTCTCCGAGTTCCGATCAACGATCTCTGGAATTAGTTTTCGGATTTTGATTTCTGTTGTTCGTCGTTTGTGCAGCCGAAGCACATCGGTAATGATATGTGGGATGTTGCCATGGAACGGAGGGACAAGAAACTTGTGGAGAATCTCTCCGCCACTTCTCATAGTTAA

mRNA sequence

ATGGGATGGAGATGGCTGGAAGCGGCACTTCCTCTGGGAATTATCGCCGGAATGCTCTGTATAATGGGAAATGCTCAATATCACATCCACAAAGCCGCCCATGGACGGCCGAAGCACATCGGTAATGATATGTGGGATGTTGCCATGGAACGGAGGGACAAGAAACTTGTGGAGAATCTCTCCGCCACTTCTCATAGTTAA

Coding sequence (CDS)

ATGGGATGGAGATGGCTGGAAGCGGCACTTCCTCTGGGAATTATCGCCGGAATGCTCTGTATAATGGGAAATGCTCAATATCACATCCACAAAGCCGCCCATGGACGGCCGAAGCACATCGGTAATGATATGTGGGATGTTGCCATGGAACGGAGGGACAAGAAACTTGTGGAGAATCTCTCCGCCACTTCTCATAGTTAA

Protein sequence

MGWRWLEAALPLGIIAGMLCIMGNAQYHIHKAAHGRPKHIGNDMWDVAMERRDKKLVENLSATSHS

Homology

[Close]

BLAST of Cla97C04G072720.1 vs. NCBI nr
Match: XP_022950918.1 (NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 1 [Cucurbita moschata] >XP_022950920.1 NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 1 [Cucurbita moschata] >XP_023543068.1 NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 1 [Cucurbita pepo subsp. pepo] >XP_023543069.1 NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 1 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 140.2 bits (352), Expect = 2.5e-30
Identity = 64/66 (96.97%), Postives = 65/66 (98.48%), Query Frame = 0


Query: 1  MGWRWLEAALPLGIIAGMLCIMGNAQYHIHKAAHGRPKHIGNDMWDVAMERRDKKLVENL 60
          MGWRWLEAALPLGIIAGMLCIMGNAQYHIHKAAHGRPKHIGNDMWDVAMERRDKKLVEN+
Sbjct: 1  MGWRWLEAALPLGIIAGMLCIMGNAQYHIHKAAHGRPKHIGNDMWDVAMERRDKKLVENV 60

Query: 61 SATSHS 67
          SA SHS
Sbjct: 61 SAGSHS 66

[Close]

BLAST of Cla97C04G072720.1 vs. NCBI nr
Match: XP_008463294.1 (PREDICTED: NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 1 [Cucumis melo] >XP_008463295.1 PREDICTED: NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 1 [Cucumis melo] >XP_008463296.1 PREDICTED: NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 1 [Cucumis melo])

HSP 1 Score: 139.4 bits (350), Expect = 4.3e-30
Identity = 63/65 (96.92%), Postives = 65/65 (100.00%), Query Frame = 0


Query: 2  GWRWLEAALPLGIIAGMLCIMGNAQYHIHKAAHGRPKHIGNDMWDVAMERRDKKLVENLS 61
          GWRWLEAALPLGIIAGMLC+MGNAQY+IHKAAHGRPKHIGNDMWDVAMERRDKKLVENLS
Sbjct: 3  GWRWLEAALPLGIIAGMLCVMGNAQYYIHKAAHGRPKHIGNDMWDVAMERRDKKLVENLS 62

Query: 62 ATSHS 67
          ATSHS
Sbjct: 63 ATSHS 67

[Close]

BLAST of Cla97C04G072720.1 vs. NCBI nr
Match: XP_004142669.1 (PREDICTED: NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 1 [Cucumis sativus] >XP_011653734.1 PREDICTED: NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 1 [Cucumis sativus] >KGN54471.1 hypothetical protein Csa_4G337280 [Cucumis sativus])

HSP 1 Score: 137.5 bits (345), Expect = 1.6e-29
Identity = 62/65 (95.38%), Postives = 64/65 (98.46%), Query Frame = 0


Query: 2  GWRWLEAALPLGIIAGMLCIMGNAQYHIHKAAHGRPKHIGNDMWDVAMERRDKKLVENLS 61
          GWRWLEAALPLGIIAGMLC+MGNAQY+IHKAAHGRPKHIGNDMWDVAMERRDKKLVENLS
Sbjct: 3  GWRWLEAALPLGIIAGMLCVMGNAQYYIHKAAHGRPKHIGNDMWDVAMERRDKKLVENLS 62

Query: 62 ATSHS 67
          A SHS
Sbjct: 63 AASHS 67

[Close]

BLAST of Cla97C04G072720.1 vs. NCBI nr
Match: XP_022966508.1 (NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 1 [Cucurbita maxima] >XP_022966509.1 NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 1 [Cucurbita maxima])

HSP 1 Score: 136.0 bits (341), Expect = 4.8e-29
Identity = 61/65 (93.85%), Postives = 62/65 (95.38%), Query Frame = 0


Query: 1  MGWRWLEAALPLGIIAGMLCIMGNAQYHIHKAAHGRPKHIGNDMWDVAMERRDKKLVENL 60
          M WRW+EAALPLGIIAGMLCIMGNAQYHIHKAAHGRPKHIGNDMWDVAMERRDKKLVEN 
Sbjct: 1  MAWRWMEAALPLGIIAGMLCIMGNAQYHIHKAAHGRPKHIGNDMWDVAMERRDKKLVENF 60

Query: 61 SATSH 66
          SA SH
Sbjct: 61 SAASH 65

[Close]

BLAST of Cla97C04G072720.1 vs. NCBI nr
Match: XP_022156255.1 (NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 1 [Momordica charantia] >XP_022156256.1 NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 1 [Momordica charantia] >XP_022156257.1 NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 1 [Momordica charantia])

HSP 1 Score: 131.0 bits (328), Expect = 1.5e-27
Identity = 59/66 (89.39%), Postives = 61/66 (92.42%), Query Frame = 0


Query: 1  MGWRWLEAALPLGIIAGMLCIMGNAQYHIHKAAHGRPKHIGNDMWDVAMERRDKKLVENL 60
          MGW W+EA LPLGIIAGMLCIMGNAQY IHKAAHGRPKHIGNDMWDVAMERRDKKL+EN 
Sbjct: 1  MGWIWMEAVLPLGIIAGMLCIMGNAQYQIHKAAHGRPKHIGNDMWDVAMERRDKKLMENF 60

Query: 61 SATSHS 67
          SA SHS
Sbjct: 61 SAASHS 66

[Close]

BLAST of Cla97C04G072720.1 vs. TrEMBL
Match: tr|A0A1S3CIY2|A0A1S3CIY2_CUCME (NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 1 OS=Cucumis melo OX=3656 GN=LOC103501486 PE=4 SV=1)

HSP 1 Score: 139.4 bits (350), Expect = 2.9e-30
Identity = 63/65 (96.92%), Postives = 65/65 (100.00%), Query Frame = 0


Query: 2  GWRWLEAALPLGIIAGMLCIMGNAQYHIHKAAHGRPKHIGNDMWDVAMERRDKKLVENLS 61
          GWRWLEAALPLGIIAGMLC+MGNAQY+IHKAAHGRPKHIGNDMWDVAMERRDKKLVENLS
Sbjct: 3  GWRWLEAALPLGIIAGMLCVMGNAQYYIHKAAHGRPKHIGNDMWDVAMERRDKKLVENLS 62

Query: 62 ATSHS 67
          ATSHS
Sbjct: 63 ATSHS 67

[Close]

BLAST of Cla97C04G072720.1 vs. TrEMBL
Match: tr|A0A0A0L2Y7|A0A0A0L2Y7_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G337280 PE=4 SV=1)

HSP 1 Score: 137.5 bits (345), Expect = 1.1e-29
Identity = 62/65 (95.38%), Postives = 64/65 (98.46%), Query Frame = 0


Query: 2  GWRWLEAALPLGIIAGMLCIMGNAQYHIHKAAHGRPKHIGNDMWDVAMERRDKKLVENLS 61
          GWRWLEAALPLGIIAGMLC+MGNAQY+IHKAAHGRPKHIGNDMWDVAMERRDKKLVENLS
Sbjct: 3  GWRWLEAALPLGIIAGMLCVMGNAQYYIHKAAHGRPKHIGNDMWDVAMERRDKKLVENLS 62

Query: 62 ATSHS 67
          A SHS
Sbjct: 63 AASHS 67

[Close]

BLAST of Cla97C04G072720.1 vs. TrEMBL
Match: tr|B9T0P0|B9T0P0_RICCO (Uncharacterized protein OS=Ricinus communis OX=3988 GN=RCOM_0126310 PE=4 SV=1)

HSP 1 Score: 131.0 bits (328), Expect = 1.0e-27
Identity = 59/64 (92.19%), Postives = 62/64 (96.88%), Query Frame = 0


Query: 1  MGWRWLEAALPLGIIAGMLCIMGNAQYHIHKAAHGRPKHIGNDMWDVAMERRDKKLVENL 60
          M WRWLEAALPLGIIAGMLC+MGNAQY+IH+AAHGRPKHIGNDMWDVAMERRDKKLVENL
Sbjct: 1  MSWRWLEAALPLGIIAGMLCVMGNAQYYIHRAAHGRPKHIGNDMWDVAMERRDKKLVENL 60

Query: 61 SATS 65
          SA S
Sbjct: 61 SAPS 64

[Close]

BLAST of Cla97C04G072720.1 vs. TrEMBL
Match: tr|E9JFV8|E9JFV8_JATCU (Uncharacterized protein OS=Jatropha curcas OX=180498 PE=2 SV=1)

HSP 1 Score: 129.0 bits (323), Expect = 3.9e-27
Identity = 59/64 (92.19%), Postives = 61/64 (95.31%), Query Frame = 0


Query: 1  MGWRWLEAALPLGIIAGMLCIMGNAQYHIHKAAHGRPKHIGNDMWDVAMERRDKKLVENL 60
          M W WLEAALPLGIIAGMLC+MGNAQY+IHKAAHGRPKHIGNDMWDVAMERRDKKLVENL
Sbjct: 1  MAWIWLEAALPLGIIAGMLCVMGNAQYYIHKAAHGRPKHIGNDMWDVAMERRDKKLVENL 60

Query: 61 SATS 65
          SA S
Sbjct: 61 SAPS 64

[Close]

BLAST of Cla97C04G072720.1 vs. TrEMBL
Match: tr|A0A2C9VBL2|A0A2C9VBL2_MANES (Uncharacterized protein OS=Manihot esculenta OX=3983 GN=MANES_09G121600 PE=4 SV=1)

HSP 1 Score: 128.3 bits (321), Expect = 6.6e-27
Identity = 58/64 (90.62%), Postives = 61/64 (95.31%), Query Frame = 0


Query: 1  MGWRWLEAALPLGIIAGMLCIMGNAQYHIHKAAHGRPKHIGNDMWDVAMERRDKKLVENL 60
          M W WLEAALPLGIIAGMLC+MGNAQY+IH+AAHGRPKHIGNDMWDVAMERRDKKLVENL
Sbjct: 1  MSWLWLEAALPLGIIAGMLCVMGNAQYYIHRAAHGRPKHIGNDMWDVAMERRDKKLVENL 60

Query: 61 SATS 65
          SA S
Sbjct: 61 SAPS 64

[Close]

BLAST of Cla97C04G072720.1 vs. Swiss-Prot
Match: sp|Q9C9Z5|NDUA1_ARATH (NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 1 OS=Arabidopsis thaliana OX=3702 GN=At3g08610 PE=3 SV=1)

HSP 1 Score: 106.3 bits (264), Expect = 1.3e-22
Identity = 48/60 (80.00%), Postives = 53/60 (88.33%), Query Frame = 0


Query: 5  WLEAALPLGIIAGMLCIMGNAQYHIHKAAHGRPKHIGNDMWDVAMERRDKKLVENLSATS 64
          WLEA LPLGII GMLCIMGN+QY+IHKA HGRPKHIG+D WDVAMERRDKK+VE  +A S
Sbjct: 5  WLEAMLPLGIIGGMLCIMGNSQYYIHKAYHGRPKHIGHDEWDVAMERRDKKVVEKAAAPS 64

[Close]

BLAST of Cla97C04G072720.1 vs. TAIR10
Match: AT3G08610.1 (unknown protein)

HSP 1 Score: 106.3 bits (264), Expect = 7.3e-24
Identity = 48/60 (80.00%), Postives = 53/60 (88.33%), Query Frame = 0


Query: 5  WLEAALPLGIIAGMLCIMGNAQYHIHKAAHGRPKHIGNDMWDVAMERRDKKLVENLSATS 64
          WLEA LPLGII GMLCIMGN+QY+IHKA HGRPKHIG+D WDVAMERRDKK+VE  +A S
Sbjct: 5  WLEAMLPLGIIGGMLCIMGNSQYYIHKAYHGRPKHIGHDEWDVAMERRDKKVVEKAAAPS 64

The following BLAST results are available for this feature:

BLAST of Cla97C04G072720.1 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022950918.1	2.5e-30	96.97	NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 1 [Cucurbita moschata...	[more]
XP_008463294.1	4.3e-30	96.92	PREDICTED: NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 1 [Cucumis...	[more]
XP_004142669.1	1.6e-29	95.38	PREDICTED: NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 1 [Cucumis...	[more]
XP_022966508.1	4.8e-29	93.85	NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 1 [Cucurbita maxima] ...	[more]
XP_022156255.1	1.5e-27	89.39	NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 1 [Momordica charanti...	[more]

BLAST of Cla97C04G072720.1 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A1S3CIY2\|A0A1S3CIY2_CUCME	2.9e-30	96.92	NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 1 OS=Cucumis melo OX=...	[more]
tr\|A0A0A0L2Y7\|A0A0A0L2Y7_CUCSA	1.1e-29	95.38	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G337280 PE=4 SV=1	[more]
tr\|B9T0P0\|B9T0P0_RICCO	1.0e-27	92.19	Uncharacterized protein OS=Ricinus communis OX=3988 GN=RCOM_0126310 PE=4 SV=1	[more]
tr\|E9JFV8\|E9JFV8_JATCU	3.9e-27	92.19	Uncharacterized protein OS=Jatropha curcas OX=180498 PE=2 SV=1	[more]
tr\|A0A2C9VBL2\|A0A2C9VBL2_MANES	6.6e-27	90.63	Uncharacterized protein OS=Manihot esculenta OX=3983 GN=MANES_09G121600 PE=4 SV=...	[more]

BLAST of Cla97C04G072720.1 vs. Swiss-Prot


Match Name	E-value	Identity	Description
sp\|Q9C9Z5\|NDUA1_ARATH	1.3e-22	80.00	NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 1 OS=Arabidopsis thal...	[more]

BLAST of Cla97C04G072720.1 vs. TAIR10


Match Name	E-value	Identity	Description
AT3G08610.1	7.3e-24	80.00	unknown protein	[more]

Annotated Terms

The following terms have been associated with this mRNA:

Vocabulary: **INTERPRO**
Term	Definition
IPR017384	NADH_Ub_cplx-1_asu_su-1

GO Annotation

GO Assignments

This mRNA is annotated with the following GO terms.

Category	Term Accession	Term Name
cellular_component	GO:0016021	integral component of membrane
cellular_component	GO:0016020	membrane

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
Cla97C04G072720	Cla97C04G072720	gene

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Cla97C04G072720.1.CDS.2	Cla97C04G072720.1.CDS.2	CDS
Cla97C04G072720.1.CDS.1	Cla97C04G072720.1.CDS.1	CDS

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Cla97C04G072720.1.exon.2	Cla97C04G072720.1.exon.2	exon
Cla97C04G072720.1.exon.1	Cla97C04G072720.1.exon.1	exon

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
Cla97C04G072720.1	Cla97C04G072720.1-protein	polypeptide

InterPro

Analysis Name: InterPro Annotations of watermelon 97103 v2
Date Performed: 2019-05-12


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR017384	NADH dehydrogenase [ubiquinone] (complex I), alpha subcomplex subunit 1	PFAM	PF15879	MWFE	coord: 5..56 e-value: 8.3E-13 score: 48.2
IPR017384	NADH dehydrogenase [ubiquinone] (complex I), alpha subcomplex subunit 1	PANTHER	PTHR17098	NADH-UBIQUINONE OXIDOREDUCTASE MWFE SUBUNIT	coord: 4..61