Cla97C03G062390.1 (mRNA) Watermelon (97103) v2 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Cla97C03G062390.1
Type	mRNA
Organism	Citrullus lanatus (Watermelon (97103) v2)
Description	Ribosomal protein S1
Location	Cla97Chr03 : 23203248 .. 23203556 (-)
Sequence length	309

Genome Viewer

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDSexon

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGTTCTTGGTGGATGCAGGACCTGGGACCCCCAGAATTTGTATGCAAGATGAGCCTACAGGAGTGCCAATCAACCGAGCCACCAGGTTTGAGAATAAGGTGGGATCCCTGGATCTAGTGGCCGGTGAATCACTGATCAAAGATCAAATTTTGGAGAGATTCTTCATCGATCTAGTGGCCGGCGAATCACTGATCAAAGAGCGAGCTGCCGCCAGGTTTAATGATTTGGTGGGATCCACAGATGTAGTGGCTGGTGAACCGCTTTTTCTTCCCCCCGATACGGAAAACATAAGTCCGCTTCTTTCATAA

mRNA sequence

ATGTTCTTGGTGGATGCAGGACCTGGGACCCCCAGAATTTGTATGCAAGATGAGCCTACAGGAGTGCCAATCAACCGAGCCACCAGGTTTGAGAATAAGGTGGGATCCCTGGATCTAGTGGCCGGTGAATCACTGATCAAAGATCAAATTTTGGAGAGATTCTTCATCGATCTAGTGGCCGGCGAATCACTGATCAAAGAGCGAGCTGCCGCCAGGTTTAATGATTTGGTGGGATCCACAGATGTAGTGGCTGGTGAACCGCTTTTTCTTCCCCCCGATACGGAAAACATAAGTCCGCTTCTTTCATAA

Coding sequence (CDS)

ATGTTCTTGGTGGATGCAGGACCTGGGACCCCCAGAATTTGTATGCAAGATGAGCCTACAGGAGTGCCAATCAACCGAGCCACCAGGTTTGAGAATAAGGTGGGATCCCTGGATCTAGTGGCCGGTGAATCACTGATCAAAGATCAAATTTTGGAGAGATTCTTCATCGATCTAGTGGCCGGCGAATCACTGATCAAAGAGCGAGCTGCCGCCAGGTTTAATGATTTGGTGGGATCCACAGATGTAGTGGCTGGTGAACCGCTTTTTCTTCCCCCCGATACGGAAAACATAAGTCCGCTTCTTTCATAA

Protein sequence

MFLVDAGPGTPRICMQDEPTGVPINRATRFENKVGSLDLVAGESLIKDQILERFFIDLVAGESLIKERAAARFNDLVGSTDVVAGEPLFLPPDTENISPLLS

Homology

[Close]

BLAST of Cla97C03G062390.1 vs. NCBI nr
Match: YP_002608382.1 (ribosomal protein S1 [Vitis vinifera] >CAQ77631.1 ribosomal protein S1 (mitochondrion) [Vitis vinifera] >ACS15189.1 ribosomal protein S1 (mitochondrion) [Vitis vinifera])

HSP 1 Score: 113.2 bits (282), Expect = 5.1e-22
Identity = 53/55 (96.36%), Postives = 54/55 (98.18%), Query Frame = 0


Query: 1  MFLVDAGPGTPRICMQDEPTGVPINRATRFENKVGSLDLVAGESLIKDQILERFF 56
          MFLVDAGPGTPRICMQDEPTGVPINRATRFENKVGSLDLVAGESLIK+QI ERFF
Sbjct: 1  MFLVDAGPGTPRICMQDEPTGVPINRATRFENKVGSLDLVAGESLIKEQIFERFF 55

[Close]

BLAST of Cla97C03G062390.1 vs. NCBI nr
Match: CAN65168.1 (hypothetical protein VITISV_029402 [Vitis vinifera])

HSP 1 Score: 113.2 bits (282), Expect = 5.1e-22
Identity = 53/55 (96.36%), Postives = 54/55 (98.18%), Query Frame = 0


Query: 1   MFLVDAGPGTPRICMQDEPTGVPINRATRFENKVGSLDLVAGESLIKDQILERFF 56
           MFLVDAGPGTPRICMQDEPTGVPINRATRFENKVGSLDLVAGESLIK+QI ERFF
Sbjct: 51  MFLVDAGPGTPRICMQDEPTGVPINRATRFENKVGSLDLVAGESLIKEQIFERFF 105

[Close]

BLAST of Cla97C03G062390.1 vs. NCBI nr
Match: XP_022974554.1 (uncharacterized protein LOC111473236 [Cucurbita maxima])

HSP 1 Score: 112.5 bits (280), Expect = 8.7e-22
Identity = 53/55 (96.36%), Postives = 54/55 (98.18%), Query Frame = 0


Query: 1  MFLVDAGPGTPRICMQDEPTGVPINRATRFENKVGSLDLVAGESLIKDQILERFF 56
          MFLVDAGPGTPRICMQDEPTGVPINRATRFENKVGSLDLVAGESLIK+ ILERFF
Sbjct: 36 MFLVDAGPGTPRICMQDEPTGVPINRATRFENKVGSLDLVAGESLIKEPILERFF 90

[Close]

BLAST of Cla97C03G062390.1 vs. NCBI nr
Match: YP_003587248.2 (ribosomal protein S1 [Citrullus lanatus] >ACV96647.2 ribosomal protein S1 (mitochondrion) [Citrullus lanatus])

HSP 1 Score: 112.1 bits (279), Expect = 1.1e-21
Identity = 53/54 (98.15%), Postives = 53/54 (98.15%), Query Frame = 0


Query: 1  MFLVDAGPGTPRICMQDEPTGVPINRATRFENKVGSLDLVAGESLIKDQILERF 55
          MFLVDAGPGTPRICMQDEPTGVPINRATRFENKVG LDLVAGESLIKDQILERF
Sbjct: 35 MFLVDAGPGTPRICMQDEPTGVPINRATRFENKVGFLDLVAGESLIKDQILERF 88

[Close]

BLAST of Cla97C03G062390.1 vs. NCBI nr
Match: YP_007516901.1 (ribosomal protein S1 (mitochondrion) [Glycine max] >AFR34320.1 ribosomal protein S1 (mitochondrion) [Glycine max])

HSP 1 Score: 112.1 bits (279), Expect = 1.1e-21
Identity = 53/55 (96.36%), Postives = 54/55 (98.18%), Query Frame = 0


Query: 1  MFLVDAGPGTPRICMQDEPTGVPINRATRFENKVGSLDLVAGESLIKDQILERFF 56
          MFLVDAGPGTPRICMQDEPTGVPINRATRFENKVGSLDLVAGESLIK +ILERFF
Sbjct: 35 MFLVDAGPGTPRICMQDEPTGVPINRATRFENKVGSLDLVAGESLIKKKILERFF 89

[Close]

BLAST of Cla97C03G062390.1 vs. TrEMBL
Match: tr|B6VJX0|B6VJX0_VITVI (Ribosomal protein S1 OS=Vitis vinifera OX=29760 GN=rps1 PE=4 SV=1)

HSP 1 Score: 113.2 bits (282), Expect = 3.4e-22
Identity = 53/55 (96.36%), Postives = 54/55 (98.18%), Query Frame = 0


Query: 1  MFLVDAGPGTPRICMQDEPTGVPINRATRFENKVGSLDLVAGESLIKDQILERFF 56
          MFLVDAGPGTPRICMQDEPTGVPINRATRFENKVGSLDLVAGESLIK+QI ERFF
Sbjct: 1  MFLVDAGPGTPRICMQDEPTGVPINRATRFENKVGSLDLVAGESLIKEQIFERFF 55

[Close]

BLAST of Cla97C03G062390.1 vs. TrEMBL
Match: tr|A5B207|A5B207_VITVI (Uncharacterized protein OS=Vitis vinifera OX=29760 GN=VITISV_029402 PE=4 SV=1)

HSP 1 Score: 113.2 bits (282), Expect = 3.4e-22
Identity = 53/55 (96.36%), Postives = 54/55 (98.18%), Query Frame = 0


Query: 1   MFLVDAGPGTPRICMQDEPTGVPINRATRFENKVGSLDLVAGESLIKDQILERFF 56
           MFLVDAGPGTPRICMQDEPTGVPINRATRFENKVGSLDLVAGESLIK+QI ERFF
Sbjct: 51  MFLVDAGPGTPRICMQDEPTGVPINRATRFENKVGSLDLVAGESLIKEQIFERFF 105

[Close]

BLAST of Cla97C03G062390.1 vs. TrEMBL
Match: tr|A0A288W732|A0A288W732_BUPFA (Ribosomal protein S1 OS=Bupleurum falcatum OX=46367 GN=rps1 PE=4 SV=1)

HSP 1 Score: 112.1 bits (279), Expect = 7.5e-22
Identity = 53/55 (96.36%), Postives = 54/55 (98.18%), Query Frame = 0


Query: 1  MFLVDAGPGTPRICMQDEPTGVPINRATRFENKVGSLDLVAGESLIKDQILERFF 56
          MFLVDAGPGTPRICMQDEPTGVPINRATRFENKVGSLDLVAGESLIK +ILERFF
Sbjct: 36 MFLVDAGPGTPRICMQDEPTGVPINRATRFENKVGSLDLVAGESLIKKKILERFF 90

[Close]

BLAST of Cla97C03G062390.1 vs. TrEMBL
Match: tr|D5I3B8|D5I3B8_CITLA (Ribosomal protein S1 OS=Citrullus lanatus OX=3654 GN=rps1 PE=4 SV=2)

HSP 1 Score: 112.1 bits (279), Expect = 7.5e-22
Identity = 53/54 (98.15%), Postives = 53/54 (98.15%), Query Frame = 0


Query: 1  MFLVDAGPGTPRICMQDEPTGVPINRATRFENKVGSLDLVAGESLIKDQILERF 55
          MFLVDAGPGTPRICMQDEPTGVPINRATRFENKVG LDLVAGESLIKDQILERF
Sbjct: 35 MFLVDAGPGTPRICMQDEPTGVPINRATRFENKVGFLDLVAGESLIKDQILERF 88

[Close]

BLAST of Cla97C03G062390.1 vs. TrEMBL
Match: tr|M1FP86|M1FP86_SOYBN (Ribosomal protein S1 OS=Glycine max OX=3847 GN=rps1 PE=4 SV=1)

HSP 1 Score: 112.1 bits (279), Expect = 7.5e-22
Identity = 53/55 (96.36%), Postives = 54/55 (98.18%), Query Frame = 0


Query: 1  MFLVDAGPGTPRICMQDEPTGVPINRATRFENKVGSLDLVAGESLIKDQILERFF 56
          MFLVDAGPGTPRICMQDEPTGVPINRATRFENKVGSLDLVAGESLIK +ILERFF
Sbjct: 35 MFLVDAGPGTPRICMQDEPTGVPINRATRFENKVGSLDLVAGESLIKKKILERFF 89

The following BLAST results are available for this feature:

BLAST of Cla97C03G062390.1 vs. NCBI nr


Match Name	E-value	Identity	Description
YP_002608382.1	5.1e-22	96.36	ribosomal protein S1 [Vitis vinifera] >CAQ77631.1 ribosomal protein S1 (mitochon...	[more]
CAN65168.1	5.1e-22	96.36	hypothetical protein VITISV_029402 [Vitis vinifera]	[more]
XP_022974554.1	8.7e-22	96.36	uncharacterized protein LOC111473236 [Cucurbita maxima]	[more]
YP_003587248.2	1.1e-21	98.15	ribosomal protein S1 [Citrullus lanatus] >ACV96647.2 ribosomal protein S1 (mitoc...	[more]
YP_007516901.1	1.1e-21	96.36	ribosomal protein S1 (mitochondrion) [Glycine max] >AFR34320.1 ribosomal protein...	[more]

BLAST of Cla97C03G062390.1 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|B6VJX0\|B6VJX0_VITVI	3.4e-22	96.36	Ribosomal protein S1 OS=Vitis vinifera OX=29760 GN=rps1 PE=4 SV=1	[more]
tr\|A5B207\|A5B207_VITVI	3.4e-22	96.36	Uncharacterized protein OS=Vitis vinifera OX=29760 GN=VITISV_029402 PE=4 SV=1	[more]
tr\|A0A288W732\|A0A288W732_BUPFA	7.5e-22	96.36	Ribosomal protein S1 OS=Bupleurum falcatum OX=46367 GN=rps1 PE=4 SV=1	[more]
tr\|D5I3B8\|D5I3B8_CITLA	7.5e-22	98.15	Ribosomal protein S1 OS=Citrullus lanatus OX=3654 GN=rps1 PE=4 SV=2	[more]
tr\|M1FP86\|M1FP86_SOYBN	7.5e-22	96.36	Ribosomal protein S1 OS=Glycine max OX=3847 GN=rps1 PE=4 SV=1	[more]

BLAST of Cla97C03G062390.1 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of Cla97C03G062390.1 vs. TAIR10


Match Name	E-value	Identity	Description

GO Annotation

GO Assignments

This mRNA is annotated with the following GO terms.

Category	Term Accession	Term Name
cellular_component	GO:0016021	integral component of membrane
cellular_component	GO:0016020	membrane
cellular_component	GO:0005739	mitochondrion
cellular_component	GO:0005840	ribosome

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
Cla97C03G062390	Cla97C03G062390	gene

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Cla97C03G062390.1.CDS.1	Cla97C03G062390.1.CDS.1	CDS

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Cla97C03G062390.1.exon.1	Cla97C03G062390.1.exon.1	exon

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
Cla97C03G062390.1	Cla97C03G062390.1-protein	polypeptide