Cla97C03G062290.1 (mRNA) Watermelon (97103) v2

Overview
NameCla97C03G062290.1
TypemRNA
OrganismCitrullus lanatus (Watermelon (97103) v2)
DescriptionUnknown protein
LocationCla97Chr03 : 23174838 .. 23178093 (-)
Sequence length918
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDSexon
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGCTGTGATTCAATATGAAAAGGCCAGCACTCACTCTTCAGAAAATATCGAGATGCATGTAATAATCAAGGTTTTGATTCCAGAGTCAGATTGGGGAGACAACTCCTTCAAGGCTTTGACTTACATTCCGAGGAAGACTTTCCCAGCAACAGAAGAAAAGATTGCGAGGTACTTCTACCGCATCAAAAAGGTACCTTCGAGCTCAGCTTTGTCATCTAGCTCGGGCTGTTCAAAAAGAAAAAGAGGTTCCAACTAAGAAGAACCGAACCTGAGGGGGAGCCACATAAAAAGAGATTCTAAACAAAATGTGAGCTGCAGCCGAACTCGTTGCAAGAAAAGGTAGTTGAATGTGTTAGGCGAAGAGAATATAGCACGTAGAAGCAACTAGAGTCGGCAGTTCGACGGCTTAATGCTTGCCAGAGATAGTTCTATAGCCCTTAGGATAAAGACATGAGCATAGGATTTCAGAGGAGCCCAAGGAGGTTTCACGATCCGATCTCTCACTTGAAGAAAGATAGCCTAGCTATAGAAAAAGGATGCAATGATGAGAAAGTTCTTTTTTCATTGTAACGCTAAGGTGGACAAGACCTTACAACTAGAAAAGGGGGCAAAATCACAAGTTATCTTTAGAAAATTGGGATCTCCTTGATGATCCTCCTTTCATCACAGAGGGGCAGAAGATGAGTTGGGAGTTTCATCGAGATTACTATCACTCGTCCTAACCTCTCATATGTTGTGGGGATTGGTTGTCAATGTATGTTATGCTATCTCCGCAGAAGTGAAATTTGGATGAACTCAAAAAGATCCTCAGGTATATAAAGAAAGACCCACCCTAAAAAAAAGGCATTCTTTTATCGGTAAGCAAAAGGATCCTTGCTTCGGGCAACTTAGGGCCTATTCAGATGCTGCCCCTACCTATGAAAGCTGAAGGAAGGTATTAATGCTGGCTTTCTCTCTGATAGAAAATCAACCATAGGCAAATTGATTCCCTGGAAAAGCAAAAAGAAAGGGGACTTCTTCTTCCCAGCCAGAAGCAAGCATAGCTTAGGCATAGGATTCCACATCCGTATCAGAAGTGCAAAAATTATTCGCACACCCCCCTCTCCCTATCGGTAAAGCTGCTTCGCTCCTCCCCTGAATTCAAAAAAAAGAAGATGAGGCTTTTGCTATGCCACCAGAATTGTGTAGTTAGAGTTATCCCCTTACACTGGGAGTGCTGCTCAAGCGCACAGGTCTGGATCTTGAATCGGATGATGAATTCTCTTCTGGAAAAGGAACTACAACCTATGCCCACTAAAACCCACCGCCCTTATACCGCGCCGTGCATATAGAAAGAAAGAATAGACTCTATTCCCCCAAAAAGGTTATACTAAGTGCAATTCCTTAGCTATTTCTAGTGGTCTTGTTTCCATTCCTCTAGAAGGGTATTGGCATCAAAAAGAGGGCCTAATGCGCCCGGAACTATGGCACCGAAACGGGTCTGCGGGCCGGCAACCCGACCAGCTAAGAGCAACTCCAAGCTTGAGGAAGAATACGATATCACTAAAGCAACCGTCGAAATGAAAGCAAGGCCTAATTGCTTGCTGCACTTCGCGCGCAGGAACGGATCTTAGCCAATGACCGGCTTAGGCCGAGAGCACCAGTAGGCGCGCGTAGGTGGGTTCTCCCCTATTTTTGGGCTGCTAAACTTGGCTCAGTGAGTCTATGAACTGATACAGATTCATTGAAATAGCATATATAGAATGAAGGACTGATACCGAAGGAACTCGAACAAGAACAAACAATTGAAAAGAAATAGCAACTATTTAATTAACTACGGAGTAAAGAAAGATTGAACGGAACATTTCATTTCTTTTATTCTATTCTATCTTTAGTTACAGTCCGCTCTAGAAAGTCACTGATAGCTTCTTCTCGCGATGAGACAGAGTACACTGATATCGATGAGAGGTATAGAATTACAGACAGAGTGAGATGTAGAACCTGTACTAGATTGAAAGAATCAATGGCAATAGAATTCCTGCTCAGGTTAAATGTAACTCTAAGGCACTTGTTGATGCGCTACTACTATCAGTTCTACTTTAGCAGTTAGGATTTATTTGACTTAGCAGCCTTAGCTTTAGACTAGCCCTTCTGGAAAGAGATTCAATAGCACCGGTCAAAGAGCTAGCAATGACTTTCTTCCCACCCGGAGTGATGGTTAGGCCACGGCCAAGAGAACCCTTCAGATACCGTAAGATGCGTTTTACAGCCTGGAGATGTACGATGGTGAAAGCGTGCATGAACTGACAAACTTGATTGAAAGCATAGCGGATGTCAGGTCTGGTGAGAGTGAGGTACTGAAGGGCGCCAACAATGCTACGAGATTCTGTTGCATCAGAGAGAGGAGCACCATCGTATGCAGAGAGCTTTGAGCCAGACGCAAGGTGTGTGCCGCTGTTTTCTTTCCTATATTTTCCACTTTGCAGGTAAGAACTATCGGCAGACGAAAGAGAACTTATTTAGACGAAAAGTGTGCCGGTGCCATTACCCCAAAAAACCCTACATTAGCTGTTCGGGTGGAATCAGACATAAACCAAGTCCAAGAAGACCGAGGAGGCCTTGGGGGGAAGGTAGCGCACTAATTCGATTCTCCTTTCCTGCTACTAGGGAAGCGCGTGCTACTGCTACTACTTTTGCACCTGCTTCTCCTATTATAGTGGAATGAACTCCTACGCCTGGAACTCCTCTTTACCGCATTTCTTCCTCTTCTGCAAGAGTCATGTTCACTGCTCCTGCACCTCTAACTTCAACAGGAACTTCCGCATCTCTATTCGCATCTTCCTCATATGTAGTCTCTACGCTTGAAAAAAAAAGGCTTTTTGATCGCATCTGAAACAACTACAAGTGCGTGCATTTCCCTATCAATGCCCTTACCTGCCTGCCTTGAACTACTGCACTTGCGCATACCTTTTCTTGCTCGAGACAGAAGATAGCTTGAACTGGCATTGTAAAGATATATAGCCAATAGAAAGAAGTATTCCCAAGCTGGAGAGGAGAGAAATGGAATTTCAAGGCTTTCTACCAATGACCGGAGACCAGAAAGGGGAATCGAGAGATAAGCCTTGAGCGGTCAGACCAATTACGATCGATTCGCTAAACATTCGACGATTCGAGATGAGCCGCTAAAAGAAGGAAGGGCGATAGAGAGAGGTGGAAGGAAGACAGCCTCTCATGCATTACCAGAAGGAGACAGCGCGGAGAGCGTTAAGACCTAG

mRNA sequence

ATGGCTGTGATTCAATATGAAAAGGCCAGCACTCACTCTTCAGAAAATATCGAGATGCATGTAATAATCAAGGTTTTGATTCCAGAGTCAGATTGGGGAGACAACTCCTTCAAGGCTTTGACTTACATTCCGAGGAAGACTTTCCCAGCAACAGAAGAAAAGATTGCGAGAGGGGCAGAAGATGAGTTGGGAGTTTCATCGAGATTACTATCACTCGTCCTAACCTCTCATATGTTGTGGGGATTGGTTGTCAATTTAGAGTTATCCCCTTACACTGGGAGTGCTGCTCAAGCGCACAGGGTATTGGCATCAAAAAGAGGGCCTAATGCGCCCGGAACTATGGCACCGAAACGGGTCTGCGGGCCGGCAACCCGACCAGCTAAGAGCAACTCCAAGCTTGAGGAAGAATACGATATCACTAAAGCAACCGAACGGATCTTAGCCAATGACCGGCTTAGGCCGAGAGCACCAGTAGGCGCGCTCCGCTCTAGAAAGTCACTGATAGCTTCTTCTCGCGATGAGACAGAGTACACTGATATCGATGAGAGGTATAGAATTACAGACAGAGTGAGATGTAGAACCTGTACTAGATTGAAAGAATCAATGGCAATAGAATTCCTGCTCAGGTTAAATGTAAGAACTATCGGCAGACGAAAGAGAACTTATTTAGACGAAAAGTGTGCCGGTGCCATTACCCCAAAAAACCCTACATTAGCTGTTCGGGTGGAATCAGACATAAACCAAGTCCAAGAAGACCGAGGAGGCCTTGGGGGGAAGACCAATTACGATCGATTCGCTAAACATTCGACGATTCGAGATGAGCCGCTAAAAGAAGGAAGGGCGATAGAGAGAGGTGGAAGGAAGACAGCCTCTCATGCATTACCAGAAGGAGACAGCGCGGAGAGCGTTAAGACCTAG

Coding sequence (CDS)

ATGGCTGTGATTCAATATGAAAAGGCCAGCACTCACTCTTCAGAAAATATCGAGATGCATGTAATAATCAAGGTTTTGATTCCAGAGTCAGATTGGGGAGACAACTCCTTCAAGGCTTTGACTTACATTCCGAGGAAGACTTTCCCAGCAACAGAAGAAAAGATTGCGAGAGGGGCAGAAGATGAGTTGGGAGTTTCATCGAGATTACTATCACTCGTCCTAACCTCTCATATGTTGTGGGGATTGGTTGTCAATTTAGAGTTATCCCCTTACACTGGGAGTGCTGCTCAAGCGCACAGGGTATTGGCATCAAAAAGAGGGCCTAATGCGCCCGGAACTATGGCACCGAAACGGGTCTGCGGGCCGGCAACCCGACCAGCTAAGAGCAACTCCAAGCTTGAGGAAGAATACGATATCACTAAAGCAACCGAACGGATCTTAGCCAATGACCGGCTTAGGCCGAGAGCACCAGTAGGCGCGCTCCGCTCTAGAAAGTCACTGATAGCTTCTTCTCGCGATGAGACAGAGTACACTGATATCGATGAGAGGTATAGAATTACAGACAGAGTGAGATGTAGAACCTGTACTAGATTGAAAGAATCAATGGCAATAGAATTCCTGCTCAGGTTAAATGTAAGAACTATCGGCAGACGAAAGAGAACTTATTTAGACGAAAAGTGTGCCGGTGCCATTACCCCAAAAAACCCTACATTAGCTGTTCGGGTGGAATCAGACATAAACCAAGTCCAAGAAGACCGAGGAGGCCTTGGGGGGAAGACCAATTACGATCGATTCGCTAAACATTCGACGATTCGAGATGAGCCGCTAAAAGAAGGAAGGGCGATAGAGAGAGGTGGAAGGAAGACAGCCTCTCATGCATTACCAGAAGGAGACAGCGCGGAGAGCGTTAAGACCTAG

Protein sequence

MAVIQYEKASTHSSENIEMHVIIKVLIPESDWGDNSFKALTYIPRKTFPATEEKIARGAEDELGVSSRLLSLVLTSHMLWGLVVNLELSPYTGSAAQAHRVLASKRGPNAPGTMAPKRVCGPATRPAKSNSKLEEEYDITKATERILANDRLRPRAPVGALRSRKSLIASSRDETEYTDIDERYRITDRVRCRTCTRLKESMAIEFLLRLNVRTIGRRKRTYLDEKCAGAITPKNPTLAVRVESDINQVQEDRGGLGGKTNYDRFAKHSTIRDEPLKEGRAIERGGRKTASHALPEGDSAESVKT
Homology
[Close]
BLAST of Cla97C03G062290.1 vs. NCBI nr
Match: YP_009045714.1 (orf158 (mitochondrion) [Batis maritima] >AIC83317.1 orf158 (mitochondrion) [Batis maritima])

HSP 1 Score: 75.9 bits (185), Expect = 2.7e-10
Identity = 45/62 (72.58%), Postives = 48/62 (77.42%), Query Frame = 0 

Query: 1   MAVIQYEKASTHSSENI---EMHVIIKVLIPESDW--GDNSFKALTYIPRKTFPATEEKI 58
           MAVI    ASTHSS+NI     +VI KV +PESDW   DNSFKALTYIPRKTFPATEEKI
Sbjct: 57  MAVI---PASTHSSDNIYPQGHNVIRKVFLPESDWVGEDNSFKALTYIPRKTFPATEEKI 115

[Close]
BLAST of Cla97C03G062290.1 vs. TrEMBL
Match: tr|A0A068BCZ4|A0A068BCZ4_BATMA (Orf158 OS=Batis maritima OX=4436 GN=orf158 PE=4 SV=1)

HSP 1 Score: 75.9 bits (185), Expect = 1.8e-10
Identity = 45/62 (72.58%), Postives = 48/62 (77.42%), Query Frame = 0 

Query: 1   MAVIQYEKASTHSSENI---EMHVIIKVLIPESDW--GDNSFKALTYIPRKTFPATEEKI 58
           MAVI    ASTHSS+NI     +VI KV +PESDW   DNSFKALTYIPRKTFPATEEKI
Sbjct: 57  MAVI---PASTHSSDNIYPQGHNVIRKVFLPESDWVGEDNSFKALTYIPRKTFPATEEKI 115

The following BLAST results are available for this feature:
BLAST of Cla97C03G062290.1 vs. NCBI nr
Match NameE-valueIdentityDescription
YP_009045714.12.7e-1072.58orf158 (mitochondrion) [Batis maritima] >AIC83317.1 orf158 (mitochondrion) [Bati... [more]
BLAST of Cla97C03G062290.1 vs. TrEMBL
Match NameE-valueIdentityDescription
tr|A0A068BCZ4|A0A068BCZ4_BATMA1.8e-1072.58Orf158 OS=Batis maritima OX=4436 GN=orf158 PE=4 SV=1[more]
BLAST of Cla97C03G062290.1 vs. Swiss-Prot
Match NameE-valueIdentityDescription
BLAST of Cla97C03G062290.1 vs. TAIR10
Match NameE-valueIdentityDescription
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameType
Cla97C03G062290Cla97C03G062290gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameType
Cla97C03G062290.1Cla97C03G062290.1-proteinpolypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameType
Cla97C03G062290.1.CDS.8Cla97C03G062290.1.CDS.8CDS
Cla97C03G062290.1.CDS.7Cla97C03G062290.1.CDS.7CDS
Cla97C03G062290.1.CDS.6Cla97C03G062290.1.CDS.6CDS
Cla97C03G062290.1.CDS.5Cla97C03G062290.1.CDS.5CDS
Cla97C03G062290.1.CDS.4Cla97C03G062290.1.CDS.4CDS
Cla97C03G062290.1.CDS.3Cla97C03G062290.1.CDS.3CDS
Cla97C03G062290.1.CDS.2Cla97C03G062290.1.CDS.2CDS
Cla97C03G062290.1.CDS.1Cla97C03G062290.1.CDS.1CDS


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameType
Cla97C03G062290.1.exon.8Cla97C03G062290.1.exon.8exon
Cla97C03G062290.1.exon.7Cla97C03G062290.1.exon.7exon
Cla97C03G062290.1.exon.6Cla97C03G062290.1.exon.6exon
Cla97C03G062290.1.exon.5Cla97C03G062290.1.exon.5exon
Cla97C03G062290.1.exon.4Cla97C03G062290.1.exon.4exon
Cla97C03G062290.1.exon.3Cla97C03G062290.1.exon.3exon
Cla97C03G062290.1.exon.2Cla97C03G062290.1.exon.2exon
Cla97C03G062290.1.exon.1Cla97C03G062290.1.exon.1exon


InterPro
Analysis Name: InterPro Annotations of watermelon 97103 v2
Date Performed: 2019-05-12
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 267..291
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 267..305