Cla97C01G009940.1 (mRNA) Watermelon (97103) v2

Overview
NameCla97C01G009940.1
TypemRNA
OrganismCitrullus lanatus (Watermelon (97103) v2)
DescriptionAnkyrin repeat family protein, putative
LocationCla97Chr01 : 13182452 .. 13182664 (+)
Sequence length213
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGAAGAAGATTTTTGGAAGAACAACTGCGGAAACAGGCCGCTGCACGAGGCGGCGACGGTGGGGAATTTGGGGGCCCTTAAGTTTCTGGTTGAAGAATTCAAGGAAAGGGATATGTTGGTGAAGAACATTTATGGGGAAACTCCATTGTATAGAGCTGCTAAATATGGACAGCTTCACATTGTTAAGTATTTTTTGGATGATCGATTGTGA

mRNA sequence

ATGGAAGAAGATTTTTGGAAGAACAACTGCGGAAACAGGCCGCTGCACGAGGCGGCGACGGTGGGGAATTTGGGGGCCCTTAAGTTTCTGGTTGAAGAATTCAAGGAAAGGGATATGTTGGTGAAGAACATTTATGGGGAAACTCCATTGTATAGAGCTGCTAAATATGGACAGCTTCACATTGTTAAGTATTTTTTGGATGATCGATTGTGA

Coding sequence (CDS)

ATGGAAGAAGATTTTTGGAAGAACAACTGCGGAAACAGGCCGCTGCACGAGGCGGCGACGGTGGGGAATTTGGGGGCCCTTAAGTTTCTGGTTGAAGAATTCAAGGAAAGGGATATGTTGGTGAAGAACATTTATGGGGAAACTCCATTGTATAGAGCTGCTAAATATGGACAGCTTCACATTGTTAAGTATTTTTTGGATGATCGATTGTGA

Protein sequence

MEEDFWKNNCGNRPLHEAATVGNLGALKFLVEEFKERDMLVKNIYGETPLYRAAKYGQLHIVKYFLDDRL
Homology
[Close]
BLAST of Cla97C01G009940.1 vs. NCBI nr
Match: KGN66835.1 (hypothetical protein Csa_1G700130 [Cucumis sativus])

HSP 1 Score: 57.4 bits (137), Expect = 2.3e-05
Identity = 25/36 (69.44%), Postives = 29/36 (80.56%), Query Frame = 0 

Query: 1   MEEDFWKNNCGNRPLHEAATVGNLGALKFLVEEFKE 37
           M+E FW+N+ GN PLHEAATVGNL A+K LVE  KE
Sbjct: 66  MDEAFWRNSAGNTPLHEAATVGNLAAVKLLVEYKKE 101

[Close]
BLAST of Cla97C01G009940.1 vs. NCBI nr
Match: KGN66841.1 (hypothetical protein Csa_1G700680 [Cucumis sativus])

HSP 1 Score: 57.4 bits (137), Expect = 2.3e-05
Identity = 25/36 (69.44%), Postives = 29/36 (80.56%), Query Frame = 0 

Query: 1   MEEDFWKNNCGNRPLHEAATVGNLGALKFLVEEFKE 37
           M+E FW+N+ GN PLHEAATVGNL A+K LVE  KE
Sbjct: 66  MDEAFWRNSAGNTPLHEAATVGNLAAVKLLVEYKKE 101

[Close]
BLAST of Cla97C01G009940.1 vs. NCBI nr
Match: XP_011648561.1 (PREDICTED: uncharacterized protein LOC101203890 [Cucumis sativus])

HSP 1 Score: 57.4 bits (137), Expect = 2.3e-05
Identity = 25/36 (69.44%), Postives = 29/36 (80.56%), Query Frame = 0 

Query: 1   MEEDFWKNNCGNRPLHEAATVGNLGALKFLVEEFKE 37
           M+E FW+N+ GN PLHEAATVGNL A+K LVE  KE
Sbjct: 66  MDEAFWRNSAGNTPLHEAATVGNLAAVKLLVEYKKE 101

[Close]
BLAST of Cla97C01G009940.1 vs. NCBI nr
Match: XP_022142681.1 (uncharacterized protein LOC111012737, partial [Momordica charantia])

HSP 1 Score: 55.5 bits (132), Expect = 8.7e-05
Identity = 24/40 (60.00%), Postives = 31/40 (77.50%), Query Frame = 0 

Query: 1   MEEDFWKNNCGNRPLHEAATVGNLGALKFLVEEFKERDML 41
           ++E+FWKN  GN PLHEAA VGNL A+K LV E+ + D+L
Sbjct: 98  IDEEFWKNRAGNTPLHEAAAVGNLAAVKLLV-EYNKTDLL 136

[Close]
BLAST of Cla97C01G009940.1 vs. NCBI nr
Match: XP_022142589.1 (uncharacterized protein LOC111012667, partial [Momordica charantia])

HSP 1 Score: 55.1 bits (131), Expect = 1.1e-04
Identity = 24/40 (60.00%), Postives = 31/40 (77.50%), Query Frame = 0 

Query: 1   MEEDFWKNNCGNRPLHEAATVGNLGALKFLVEEFKERDML 41
           +E +FW N+ GN PLHEAA VGNL A+K LV E+K+ D+L
Sbjct: 67  VEREFWTNSAGNTPLHEAAAVGNLAAVKLLV-EYKKEDLL 105

[Close]
BLAST of Cla97C01G009940.1 vs. TrEMBL
Match: tr|A0A0A0LY86|A0A0A0LY86_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G700130 PE=4 SV=1)

HSP 1 Score: 57.4 bits (137), Expect = 1.5e-05
Identity = 25/36 (69.44%), Postives = 29/36 (80.56%), Query Frame = 0 

Query: 1   MEEDFWKNNCGNRPLHEAATVGNLGALKFLVEEFKE 37
           M+E FW+N+ GN PLHEAATVGNL A+K LVE  KE
Sbjct: 66  MDEAFWRNSAGNTPLHEAATVGNLAAVKLLVEYKKE 101

[Close]
BLAST of Cla97C01G009940.1 vs. TrEMBL
Match: tr|A0A0A0M3P4|A0A0A0M3P4_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G700680 PE=4 SV=1)

HSP 1 Score: 57.4 bits (137), Expect = 1.5e-05
Identity = 25/36 (69.44%), Postives = 29/36 (80.56%), Query Frame = 0 

Query: 1   MEEDFWKNNCGNRPLHEAATVGNLGALKFLVEEFKE 37
           M+E FW+N+ GN PLHEAATVGNL A+K LVE  KE
Sbjct: 66  MDEAFWRNSAGNTPLHEAATVGNLAAVKLLVEYKKE 101

[Close]
BLAST of Cla97C01G009940.1 vs. TrEMBL
Match: tr|A0A0A0LY91|A0A0A0LY91_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G700670 PE=4 SV=1)

HSP 1 Score: 52.8 bits (125), Expect = 3.7e-04
Identity = 23/31 (74.19%), Postives = 25/31 (80.65%), Query Frame = 0 

Query: 2   EEDFWKNNCGNRPLHEAATVGNLGALKFLVE 33
           EE FWKN  GN PLHEAAT+GNL A+K LVE
Sbjct: 80  EEVFWKNKEGNTPLHEAATIGNLAAVKLLVE 110

The following BLAST results are available for this feature:
BLAST of Cla97C01G009940.1 vs. NCBI nr
Match NameE-valueIdentityDescription
KGN66835.12.3e-0569.44hypothetical protein Csa_1G700130 [Cucumis sativus][more]
KGN66841.12.3e-0569.44hypothetical protein Csa_1G700680 [Cucumis sativus][more]
XP_011648561.12.3e-0569.44PREDICTED: uncharacterized protein LOC101203890 [Cucumis sativus][more]
XP_022142681.18.7e-0560.00uncharacterized protein LOC111012737, partial [Momordica charantia][more]
XP_022142589.11.1e-0460.00uncharacterized protein LOC111012667, partial [Momordica charantia][more]
BLAST of Cla97C01G009940.1 vs. TrEMBL
Match NameE-valueIdentityDescription
tr|A0A0A0LY86|A0A0A0LY86_CUCSA1.5e-0569.44Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G700130 PE=4 SV=1[more]
tr|A0A0A0M3P4|A0A0A0M3P4_CUCSA1.5e-0569.44Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G700680 PE=4 SV=1[more]
tr|A0A0A0LY91|A0A0A0LY91_CUCSA3.7e-0474.19Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G700670 PE=4 SV=1[more]
BLAST of Cla97C01G009940.1 vs. Swiss-Prot
Match NameE-valueIdentityDescription
BLAST of Cla97C01G009940.1 vs. TAIR10
Match NameE-valueIdentityDescription
Annotated Terms
The following terms have been associated with this mRNA:
Vocabulary: Molecular Function
TermDefinition
GO:0005515protein binding
Vocabulary: INTERPRO
TermDefinition
IPR020683Ankyrin_rpt-contain_dom
IPR036770Ankyrin_rpt-contain_sf
IPR002110Ankyrin_rpt
GO Annotation
GO Assignments
This mRNA is annotated with the following GO terms.
Category Term Accession Term Name
cellular_component GO:0016020 membrane
cellular_component GO:0016021 integral component of membrane
molecular_function GO:0005515 protein binding
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameType
Cla97C01G009940Cla97C01G009940gene


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameType
Cla97C01G009940.1.exon.1Cla97C01G009940.1.exon.1exon


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameType
Cla97C01G009940.1.CDS.1Cla97C01G009940.1.CDS.1CDS


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameType
Cla97C01G009940.1Cla97C01G009940.1-proteinpolypeptide


InterPro
Analysis Name: InterPro Annotations of watermelon 97103 v2
Date Performed: 2019-05-12
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR002110Ankyrin repeatSMARTSM00248ANK_2acoord: 45..70
e-value: 93.0
score: 11.9
coord: 10..39
e-value: 13.0
score: 14.8
IPR002110Ankyrin repeatPROSITEPS50088ANK_REPEATcoord: 45..70
score: 9.404
NoneNo IPR availablePFAMPF13637Ank_4coord: 12..66
e-value: 4.8E-10
score: 39.7
NoneNo IPR availablePANTHERPTHR24177FAMILY NOT NAMEDcoord: 7..68
NoneNo IPR availablePANTHERPTHR24177:SF71SUBFAMILY NOT NAMEDcoord: 7..68
IPR036770Ankyrin repeat-containing domain superfamilyGENE3DG3DSA:1.25.40.20coord: 3..69
e-value: 3.3E-13
score: 51.4
IPR036770Ankyrin repeat-containing domain superfamilySUPERFAMILYSSF48403Ankyrin repeatcoord: 7..67
IPR020683Ankyrin repeat-containing domainPROSITEPS50297ANK_REP_REGIONcoord: 10..70
score: 14.345
IPR020683Ankyrin repeat-containing domainCDDcd00204ANKcoord: 7..66
e-value: 1.36312E-11
score: 54.3118