Cla021687.1 (mRNA) Watermelon (97103) v1 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Cla021687
Type	mRNA
Organism	Citrullus. lanatus (Watermelon (97103) v1)
Description	DUF679 domain membrane protein 1 (AHRD V1 **-- Q9LVF4_ARATH); contains Interpro domain(s) IPR007770 Protein of unknown function DUF679
Location	Chr5 : 5273027 .. 5273527 (+)
Sequence length	501

Genome Viewer

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCCACCTCCCAGTTTAACCAAAAAACCTTCACCGGCACCGGCGACCTGATCAGAATCCTCCCGACCGGCACCGTCTTCCTCTTCCAATTCCTCAGCCCTGTCCTCACCAACAGCGGCCACTGCGAGCCGGTCAACAAAGTCCTCGTCCTGGTTCTCGTCATCCTCTGCGGTCTCTCTTGTTACCTCTCTTCCTTTACTGACTCCTACGTTGGCTCCGACGGTACCGTCCAATGGACCATCGTCACGCCCTCCGGCATGTGGCCAACCCCACCGGCGTCAGAGTCGTTGGACTTGTCGGCATACAAGCTTCGTTTAGCGGATTTTGTCCACGCGACGTTTTCAGCGGCCGTGTTTGCGGTTTTGGTGGTGATGGACTCCAATATGGTGCAGTGCTTCTTCCCCAGCTTGGTGGAGCAGCATAAGGTATTGGTCCAAACTCTGCCGCCAGTGGTCGGAGCTGTTTCGAGCGTACGTTCCCTAACACTCGCCATGGCATAG

mRNA sequence

ATGGCCACCTCCCAGTTTAACCAAAAAACCTTCACCGGCACCGGCGACCTGATCAGAATCCTCCCGACCGGCACCGTCTTCCTCTTCCAATTCCTCAGCCCTGTCCTCACCAACAGCGGCCACTGCGAGCCGGTCAACAAAGTCCTCGTCCTGGTTCTCGTCATCCTCTGCGGTCTCTCTTGTTACCTCTCTTCCTTTACTGACTCCTACGTTGGCTCCGACGGTACCGTCCAATGGACCATCGTCACGCCCTCCGGCATGTGGCCAACCCCACCGGCGTCAGAGTCGTTGGACTTGTCGGCATACAAGCTTCGTTTAGCGGATTTTGTCCACGCGACGTTTTCAGCGGCCGTGTTTGCGGTTTTGGTGGTGATGGACTCCAATATGGTGCAGTGCTTCTTCCCCAGCTTGGTGGAGCAGCATAAGGTATTGGTCCAAACTCTGCCGCCAGTGGTCGGAGCTGTTTCGAGCGTACGTTCCCTAACACTCGCCATGGCATAG

Coding sequence (CDS)

ATGGCCACCTCCCAGTTTAACCAAAAAACCTTCACCGGCACCGGCGACCTGATCAGAATCCTCCCGACCGGCACCGTCTTCCTCTTCCAATTCCTCAGCCCTGTCCTCACCAACAGCGGCCACTGCGAGCCGGTCAACAAAGTCCTCGTCCTGGTTCTCGTCATCCTCTGCGGTCTCTCTTGTTACCTCTCTTCCTTTACTGACTCCTACGTTGGCTCCGACGGTACCGTCCAATGGACCATCGTCACGCCCTCCGGCATGTGGCCAACCCCACCGGCGTCAGAGTCGTTGGACTTGTCGGCATACAAGCTTCGTTTAGCGGATTTTGTCCACGCGACGTTTTCAGCGGCCGTGTTTGCGGTTTTGGTGGTGATGGACTCCAATATGGTGCAGTGCTTCTTCCCCAGCTTGGTGGAGCAGCATAAGGTATTGGTCCAAACTCTGCCGCCAGTGGTCGGAGCTGTTTCGAGCGTACGTTCCCTAACACTCGCCATGGCATAG

Protein sequence

MATSQFNQKTFTGTGDLIRILPTGTVFLFQFLSPVLTNSGHCEPVNKVLVLVLVILCGLSCYLSSFTDSYVGSDGTVQWTIVTPSGMWPTPPASESLDLSAYKLRLADFVHATFSAAVFAVLVVMDSNMVQCFFPSLVEQHKVLVQTLPPVVGAVSSVRSLTLAMA

Homology

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BLAST of Cla021687 vs. TrEMBL
Match: A0A0A0L536_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_3G150790 PE=4 SV=1)

HSP 1 Score: 290.4 bits (742), Expect = 1.4e-75
Identity = 141/158 (89.24%), Postives = 146/158 (92.41%), Query Frame = 1


Query: 1   MATSQFNQKTFTGTGDLIRILPTGTVFLFQFLSPVLTNSGHCEPVNKVLVLVLVILCGLS 60
           MATSQ NQKTFTG GDLI+ILPTGTVFLFQFLSPVLTNSGHCEP+NKV VLV VILCGLS
Sbjct: 1   MATSQLNQKTFTGAGDLIKILPTGTVFLFQFLSPVLTNSGHCEPINKVFVLVFVILCGLS 60

Query: 61  CYLSSFTDSYVGSDGTVQWTIVTPSGMWPTPPASESLDLSAYKLRLADFVHATFSAAVFA 120
           CYLSSFTDSYV SDGT+QWTIVTPSGMWPTPP SESLDLSAYKLRL DF+HATFSAAVFA
Sbjct: 61  CYLSSFTDSYVASDGTIQWTIVTPSGMWPTPPTSESLDLSAYKLRLGDFIHATFSAAVFA 120

Query: 121 VLVVMDSNMVQCFFPSLVEQHKVLVQTLPPVVGAVSSV 159
           VLVVMD N+V CFFPSLVEQHKV VQ LPPVVG VSSV
Sbjct: 121 VLVVMDYNIVLCFFPSLVEQHKVFVQALPPVVGVVSSV 158

[Close]

BLAST of Cla021687 vs. TrEMBL
Match: A0A0A0LAH2_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_3G150800 PE=4 SV=1)

HSP 1 Score: 218.8 bits (556), Expect = 5.0e-54
Identity = 106/158 (67.09%), Postives = 125/158 (79.11%), Query Frame = 1


Query: 1   MATSQFNQKTFTGTGDLIRILPTGTVFLFQFLSPVLTNSGHCEPVNKVLVLVLVILCGLS 60
           MA+S   +KT TG G+LIR+LPTGTVFLFQFLSP+ TNSGHCEP+NK   ++L+ILCGLS
Sbjct: 20  MASSP-TEKTLTGVGNLIRLLPTGTVFLFQFLSPIPTNSGHCEPINKSFSIILIILCGLS 79

Query: 61  CYLSSFTDSYVGSDGTVQWTIVTPSGMWPTPPASESLDLSAYKLRLADFVHATFSAAVFA 120
           C+LSSFTDSY G DG + W   T SGMWP  P S+++DLS YKLR  DFVHATFSA VF 
Sbjct: 80  CFLSSFTDSYTGDDGALHWGFATASGMWPA-PESKAVDLSPYKLRAGDFVHATFSALVFG 139

Query: 121 VLVVMDSNMVQCFFPSLVEQHKVLVQTLPPVVGAVSSV 159
            LVV+DS+ ++CFFPS     K+LVQ LPPVVGAVSSV
Sbjct: 140 ALVVLDSDTMECFFPSFAAADKLLVQVLPPVVGAVSSV 175

[Close]

BLAST of Cla021687 vs. TrEMBL
Match: A0A0A0L7S6_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_3G150780 PE=4 SV=1)

HSP 1 Score: 217.2 bits (552), Expect = 1.5e-53
Identity = 107/157 (68.15%), Postives = 125/157 (79.62%), Query Frame = 1


Query: 1   MATSQFNQKTFTGTGDLIRILPTGTVFLFQFLSPVLTNSGHCEPVNKVLVLVLVILCGLS 60
           MATS   QKT TG GDLIRILPTGTVFLFQFLSP LTNSGHC   NK L L+ ++ CGLS
Sbjct: 1   MATSS-KQKTLTGAGDLIRILPTGTVFLFQFLSPSLTNSGHCNSFNKSLSLIFILFCGLS 60

Query: 61  CYLSSFTDSYVGSDGTVQWTIVTPSGMWPTPPASESLDLSAYKLRLADFVHATFSAAVFA 120
           C+LSSFTD+Y+G DG +     TPSG+WP  PA  S+D++ YKL+L DFVHAT S AVF+
Sbjct: 61  CFLSSFTDTYIGHDGAIHLAFATPSGLWPA-PAPASVDMANYKLQLGDFVHATLSVAVFS 120

Query: 121 VLVVMDSNMVQCFFPSLVEQHKVLVQTLPPVVGAVSS 158
           VLVV+DS+ V+CFFPSLV + K+LVQ LPPVVGAVSS
Sbjct: 121 VLVVLDSDTVRCFFPSLVAEDKLLVQVLPPVVGAVSS 155

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BLAST of Cla021687 vs. TrEMBL
Match: A0A0D2NYM0_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_006G256300 PE=4 SV=1)

HSP 1 Score: 192.6 bits (488), Expect = 3.9e-46
Identity = 93/157 (59.24%), Postives = 115/157 (73.25%), Query Frame = 1


Query: 2   ATSQFNQKTFTGTGDLIRILPTGTVFLFQFLSPVLTNSGHCEPVNKVLVLVLVILCGLSC 61
           +++  + KTFT  G+LI++LPTGTVF+FQFL+PVLTN GHC PVNKVL   L+ LCG SC
Sbjct: 12  SSTSISDKTFTSLGNLIKLLPTGTVFIFQFLNPVLTNYGHCSPVNKVLTSTLIGLCGFSC 71

Query: 62  YLSSFTDSYVGSDGTVQWTIVTPSGMWPTPPASESLDLSAYKLRLADFVHATFSAAVFAV 121
             S FTDSY G DG V + IVT +G+WP+  +    DLS YKLR+ DFVHA FS  VFAV
Sbjct: 72  AFSCFTDSYKGGDGLVHYGIVTVNGLWPS--SGSDSDLSKYKLRIGDFVHAFFSVIVFAV 131

Query: 122 LVVMDSNMVQCFFPSLVEQHKVLVQTLPPVVGAVSSV 159
           L ++DSN VQCF+PS     KVL+  LPPV+GAVS +
Sbjct: 132 LSLLDSNTVQCFYPSFEATEKVLLMVLPPVIGAVSGL 166

[Close]

BLAST of Cla021687 vs. TrEMBL
Match: B9RSW1_RICCO (Putative uncharacterized protein OS=Ricinus communis GN=RCOM_0679040 PE=4 SV=1)

HSP 1 Score: 191.0 bits (484), Expect = 1.1e-45
Identity = 88/148 (59.46%), Postives = 111/148 (75.00%), Query Frame = 1


Query: 9   KTFTGTGDLIRILPTGTVFLFQFLSPVLTNSGHCEPVNKVLVLVLVILCGLSCYLSSFTD 68
           KTFTG G+LI++LPTGTVF+FQFL+PVLTN+GHC  +NK L  +L+ LCG SC  SSFTD
Sbjct: 17  KTFTGFGNLIKLLPTGTVFIFQFLNPVLTNNGHCHTINKYLSGILIGLCGFSCAFSSFTD 76

Query: 69  SYVGSDGTVQWTIVTPSGMWPTPPASESLDLSAYKLRLADFVHATFSAAVFAVLVVMDSN 128
           SYVGSDG + + + T  G+WP+  A  S+DLS YKL+  DFVH+ FS  VFAVL ++DSN
Sbjct: 77  SYVGSDGLIHYGVATVKGIWPSANAGSSVDLSPYKLQFGDFVHSFFSLIVFAVLSLLDSN 136

Query: 129 MVQCFFPSLVEQHKVLVQTLPPVVGAVS 157
            V CF+PS     K L+  LPPV+GA+S
Sbjct: 137 TVDCFYPSFESTEKTLLMVLPPVIGAIS 164

[Close]

BLAST of Cla021687 vs. NCBI nr
Match: gi|449433357|ref|XP_004134464.1| (PREDICTED: uncharacterized protein LOC101205404 [Cucumis sativus])

HSP 1 Score: 290.4 bits (742), Expect = 2.0e-75
Identity = 141/158 (89.24%), Postives = 146/158 (92.41%), Query Frame = 1


Query: 1   MATSQFNQKTFTGTGDLIRILPTGTVFLFQFLSPVLTNSGHCEPVNKVLVLVLVILCGLS 60
           MATSQ NQKTFTG GDLI+ILPTGTVFLFQFLSPVLTNSGHCEP+NKV VLV VILCGLS
Sbjct: 1   MATSQLNQKTFTGAGDLIKILPTGTVFLFQFLSPVLTNSGHCEPINKVFVLVFVILCGLS 60

Query: 61  CYLSSFTDSYVGSDGTVQWTIVTPSGMWPTPPASESLDLSAYKLRLADFVHATFSAAVFA 120
           CYLSSFTDSYV SDGT+QWTIVTPSGMWPTPP SESLDLSAYKLRL DF+HATFSAAVFA
Sbjct: 61  CYLSSFTDSYVASDGTIQWTIVTPSGMWPTPPTSESLDLSAYKLRLGDFIHATFSAAVFA 120

Query: 121 VLVVMDSNMVQCFFPSLVEQHKVLVQTLPPVVGAVSSV 159
           VLVVMD N+V CFFPSLVEQHKV VQ LPPVVG VSSV
Sbjct: 121 VLVVMDYNIVLCFFPSLVEQHKVFVQALPPVVGVVSSV 158

[Close]

BLAST of Cla021687 vs. NCBI nr
Match: gi|659076592|ref|XP_008438763.1| (PREDICTED: uncharacterized protein LOC103483776 [Cucumis melo])

HSP 1 Score: 227.6 bits (579), Expect = 1.6e-56
Identity = 110/158 (69.62%), Postives = 128/158 (81.01%), Query Frame = 1


Query: 1   MATSQFNQKTFTGTGDLIRILPTGTVFLFQFLSPVLTNSGHCEPVNKVLVLVLVILCGLS 60
           MATS   +KT TG G+LIR+LPTGTVFLFQFLSP+LTNSGHCEP+NK L ++L+ILCGLS
Sbjct: 24  MATSA-TEKTLTGVGNLIRLLPTGTVFLFQFLSPILTNSGHCEPINKSLSIILIILCGLS 83

Query: 61  CYLSSFTDSYVGSDGTVQWTIVTPSGMWPTPPASESLDLSAYKLRLADFVHATFSAAVFA 120
           C+LSSFTDSY G DG + W   TPSGMWP  P S+++DLS YKLR  DFVHATFSA VF 
Sbjct: 84  CFLSSFTDSYTGDDGALHWGFATPSGMWPA-PESKTVDLSPYKLRAGDFVHATFSALVFG 143

Query: 121 VLVVMDSNMVQCFFPSLVEQHKVLVQTLPPVVGAVSSV 159
            LVV+DS+ ++CFFPS     K+LVQ LPPVVGAVSSV
Sbjct: 144 ALVVLDSDTMECFFPSFAAADKLLVQVLPPVVGAVSSV 179

[Close]

BLAST of Cla021687 vs. NCBI nr
Match: gi|659076586|ref|XP_008438760.1| (PREDICTED: uncharacterized protein LOC103483773 [Cucumis melo])

HSP 1 Score: 219.2 bits (557), Expect = 5.5e-54
Identity = 108/157 (68.79%), Postives = 126/157 (80.25%), Query Frame = 1


Query: 1   MATSQFNQKTFTGTGDLIRILPTGTVFLFQFLSPVLTNSGHCEPVNKVLVLVLVILCGLS 60
           MATS   Q+T TG GDLIRILPTGTVFLFQFLSP+LTNSGHC   NK L L+ ++ CGLS
Sbjct: 1   MATSG-KQRTLTGAGDLIRILPTGTVFLFQFLSPILTNSGHCNSFNKSLSLIFILFCGLS 60

Query: 61  CYLSSFTDSYVGSDGTVQWTIVTPSGMWPTPPASESLDLSAYKLRLADFVHATFSAAVFA 120
           C+LSSFTD+Y+G DG +     TPSG+WP  PA  S+D+S YKL+L DFVHAT S AVFA
Sbjct: 61  CFLSSFTDTYIGHDGAIHLAFATPSGLWPA-PAPASVDMSNYKLQLGDFVHATLSIAVFA 120

Query: 121 VLVVMDSNMVQCFFPSLVEQHKVLVQTLPPVVGAVSS 158
           VLVV+DS+ V+CFFPSLV + K+LVQ LPPVVGAVSS
Sbjct: 121 VLVVLDSDTVRCFFPSLVAEDKLLVQVLPPVVGAVSS 155

[Close]

BLAST of Cla021687 vs. NCBI nr
Match: gi|778688486|ref|XP_004134465.2| (PREDICTED: uncharacterized protein LOC101205641 [Cucumis sativus])

HSP 1 Score: 218.8 bits (556), Expect = 7.2e-54
Identity = 106/158 (67.09%), Postives = 125/158 (79.11%), Query Frame = 1


Query: 1   MATSQFNQKTFTGTGDLIRILPTGTVFLFQFLSPVLTNSGHCEPVNKVLVLVLVILCGLS 60
           MA+S   +KT TG G+LIR+LPTGTVFLFQFLSP+ TNSGHCEP+NK   ++L+ILCGLS
Sbjct: 1   MASSP-TEKTLTGVGNLIRLLPTGTVFLFQFLSPIPTNSGHCEPINKSFSIILIILCGLS 60

Query: 61  CYLSSFTDSYVGSDGTVQWTIVTPSGMWPTPPASESLDLSAYKLRLADFVHATFSAAVFA 120
           C+LSSFTDSY G DG + W   T SGMWP  P S+++DLS YKLR  DFVHATFSA VF 
Sbjct: 61  CFLSSFTDSYTGDDGALHWGFATASGMWPA-PESKAVDLSPYKLRAGDFVHATFSALVFG 120

Query: 121 VLVVMDSNMVQCFFPSLVEQHKVLVQTLPPVVGAVSSV 159
            LVV+DS+ ++CFFPS     K+LVQ LPPVVGAVSSV
Sbjct: 121 ALVVLDSDTMECFFPSFAAADKLLVQVLPPVVGAVSSV 156

[Close]

BLAST of Cla021687 vs. NCBI nr
Match: gi|700201918|gb|KGN57051.1| (hypothetical protein Csa_3G150800 [Cucumis sativus])

HSP 1 Score: 218.8 bits (556), Expect = 7.2e-54
Identity = 106/158 (67.09%), Postives = 125/158 (79.11%), Query Frame = 1


Query: 1   MATSQFNQKTFTGTGDLIRILPTGTVFLFQFLSPVLTNSGHCEPVNKVLVLVLVILCGLS 60
           MA+S   +KT TG G+LIR+LPTGTVFLFQFLSP+ TNSGHCEP+NK   ++L+ILCGLS
Sbjct: 20  MASSP-TEKTLTGVGNLIRLLPTGTVFLFQFLSPIPTNSGHCEPINKSFSIILIILCGLS 79

Query: 61  CYLSSFTDSYVGSDGTVQWTIVTPSGMWPTPPASESLDLSAYKLRLADFVHATFSAAVFA 120
           C+LSSFTDSY G DG + W   T SGMWP  P S+++DLS YKLR  DFVHATFSA VF 
Sbjct: 80  CFLSSFTDSYTGDDGALHWGFATASGMWPA-PESKAVDLSPYKLRAGDFVHATFSALVFG 139

Query: 121 VLVVMDSNMVQCFFPSLVEQHKVLVQTLPPVVGAVSSV 159
            LVV+DS+ ++CFFPS     K+LVQ LPPVVGAVSSV
Sbjct: 140 ALVVLDSDTMECFFPSFAAADKLLVQVLPPVVGAVSSV 175

The following BLAST results are available for this feature:

BLAST of Cla021687 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0L536_CUCSA	1.4e-75	89.24	Uncharacterized protein OS=Cucumis sativus GN=Csa_3G150790 PE=4 SV=1	[more]
A0A0A0LAH2_CUCSA	5.0e-54	67.09	Uncharacterized protein OS=Cucumis sativus GN=Csa_3G150800 PE=4 SV=1	[more]
A0A0A0L7S6_CUCSA	1.5e-53	68.15	Uncharacterized protein OS=Cucumis sativus GN=Csa_3G150780 PE=4 SV=1	[more]
A0A0D2NYM0_GOSRA	3.9e-46	59.24	Uncharacterized protein OS=Gossypium raimondii GN=B456_006G256300 PE=4 SV=1	[more]
B9RSW1_RICCO	1.1e-45	59.46	Putative uncharacterized protein OS=Ricinus communis GN=RCOM_0679040 PE=4 SV=1	[more]

BLAST of Cla021687 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|449433357\|ref\|XP_004134464.1\|	2.0e-75	89.24	PREDICTED: uncharacterized protein LOC101205404 [Cucumis sativus]	[more]
gi\|659076592\|ref\|XP_008438763.1\|	1.6e-56	69.62	PREDICTED: uncharacterized protein LOC103483776 [Cucumis melo]	[more]
gi\|659076586\|ref\|XP_008438760.1\|	5.5e-54	68.79	PREDICTED: uncharacterized protein LOC103483773 [Cucumis melo]	[more]
gi\|778688486\|ref\|XP_004134465.2\|	7.2e-54	67.09	PREDICTED: uncharacterized protein LOC101205641 [Cucumis sativus]	[more]
gi\|700201918\|gb\|KGN57051.1\|	7.2e-54	67.09	hypothetical protein Csa_3G150800 [Cucumis sativus]	[more]

Annotated Terms

The following terms have been associated with this mRNA:

Vocabulary: **INTERPRO**
Term	Definition
IPR007770	DMP

GO Annotation

GO Assignments

This mRNA is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0044444	cytoplasmic part
cellular_component	GO:0043231	intracellular membrane-bounded organelle
cellular_component	GO:0016020	membrane
molecular_function	GO:0003674	molecular_function

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
Cla021687	Cla021687	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
Cla021687	Cla021687.1-protein	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Cla021687.1.cds1	Cla021687.1.cds1	CDS

InterPro

Analysis Name: InterPro Annotations of watermelon (97103)
Date Performed: 2016-09-28


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR007770	Protein of unknown function DUF679	PFAM	PF05078	DUF679	coord: 13..158 score: 1.2
None	No IPR available	PANTHER	PTHR31621	FAMILY NOT NAMED	coord: 4..158 score: 2.5
None	No IPR available	PANTHER	PTHR31621:SF1	DUF679 DOMAIN MEMBRANE PROTEIN 1	coord: 4..158 score: 2.5