Cla021362.1 (mRNA) Watermelon (97103) v1 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Cla021362
Type	mRNA
Organism	Citrullus. lanatus (Watermelon (97103) v1)
Description	CER1-like protein (AHRD V1 **-- O80938_ARATH)
Location	Chr5 : 2532887 .. 2533372 (+)
Sequence length	354

Genome Viewer

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGCAGATATGGTTGGTGGGAGACGGAATTAAAGATGAAGAACAACTAAAGGCTCCAAAAGGAACAACTTTCATTCCCTTCTCTCAATTCCCTCCAAAGATTCTACGCCAAGATTGCTTCTACCACTCCACCCCTGCATTGAAGGCTCCTCCTTCCATTCAAAATCTTCATTCTTGTGAGGTATGCACCAACAACAAATTACTTCAAACCCTAATTGACATGTCATAAATAACGACGTCATCGTTGTCGTCAAAAAATTAAATTTCTTTAGCTAAGTTAGCTAAGTGATATAAGTCTAATAATCGTTTGTAGAATTGGTTGCCGAGACGAGTGATGAGTGCATGGCGTGTTGCGGGCATGGTGTATGCAATGGAAGGGTGGACAGAGCACGAGTGCGGTGATGCAATGTTCAATGTCGAGCAGGTCTGGCGGGCGAGCCTTCGACACGGTTTTCAGCCTTTTAAAATGCCAACTACTATTGCCTAG

mRNA sequence

ATGCAGATATGGTTGGTGGGAGACGGAATTAAAGATGAAGAACAACTAAAGGCTCCAAAAGGAACAACTTTCATTCCCTTCTCTCAATTCCCTCCAAAGATTCTACGCCAAGATTGCTTCTACCACTCCACCCCTGCATTGAAGGCTCCTCCTTCCATTCAAAATCTTCATTCTTGTGAGAATTGGTTGCCGAGACGAGTGATGAGTGCATGGCGTGTTGCGGGCATGGTGTATGCAATGGAAGGGTGGACAGAGCACGAGTGCGGTGATGCAATGTTCAATGTCGAGCAGGTCTGGCGGGCGAGCCTTCGACACGGTTTTCAGCCTTTTAAAATGCCAACTACTATTGCCTAG

Coding sequence (CDS)

ATGCAGATATGGTTGGTGGGAGACGGAATTAAAGATGAAGAACAACTAAAGGCTCCAAAAGGAACAACTTTCATTCCCTTCTCTCAATTCCCTCCAAAGATTCTACGCCAAGATTGCTTCTACCACTCCACCCCTGCATTGAAGGCTCCTCCTTCCATTCAAAATCTTCATTCTTGTGAGAATTGGTTGCCGAGACGAGTGATGAGTGCATGGCGTGTTGCGGGCATGGTGTATGCAATGGAAGGGTGGACAGAGCACGAGTGCGGTGATGCAATGTTCAATGTCGAGCAGGTCTGGCGGGCGAGCCTTCGACACGGTTTTCAGCCTTTTAAAATGCCAACTACTATTGCCTAG

Protein sequence

MQIWLVGDGIKDEEQLKAPKGTTFIPFSQFPPKILRQDCFYHSTPALKAPPSIQNLHSCENWLPRRVMSAWRVAGMVYAMEGWTEHECGDAMFNVEQVWRASLRHGFQPFKMPTTIA

Homology

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BLAST of Cla021362 vs. Swiss-Prot
Match: CERL2_ARATH (Protein CER1-like 2 OS=Arabidopsis thaliana GN=At2g37700 PE=2 SV=1)

HSP 1 Score: 162.2 bits (409), Expect = 3.5e-39
Identity = 72/115 (62.61%), Postives = 88/115 (76.52%), Query Frame = 1


Query: 3   IWLVGDGIKDEEQLKAPKGTTFIPFSQFPPKILRQDCFYHSTPALKAPPSIQNLHSCENW 62
           IWLVGDG+  +EQ  A  GT F+PFSQFPPK LR+DCFYH+TPA+  P S QN+ SCENW
Sbjct: 496 IWLVGDGLSTKEQKMAKDGTLFLPFSQFPPKTLRKDCFYHTTPAMIIPHSAQNIDSCENW 555

Query: 63  LPRRVMSAWRVAGMVYAMEGWTEHECG---DAMFNVEQVWRASLRHGFQPFKMPT 115
           L RRVMSAWRV G+V+A+EGW EHECG   +++ N  +VW A+LR+GFQP  +P+
Sbjct: 556 LGRRVMSAWRVGGIVHALEGWKEHECGLDDNSIINPPRVWEAALRNGFQPLLLPS 610

[Close]

BLAST of Cla021362 vs. Swiss-Prot
Match: CERL1_ARATH (Protein CER1-like 1 OS=Arabidopsis thaliana GN=At1g02190 PE=2 SV=1)

HSP 1 Score: 159.1 bits (401), Expect = 3.0e-38
Identity = 66/110 (60.00%), Postives = 86/110 (78.18%), Query Frame = 1


Query: 2   QIWLVGDGIKDEEQLKAPKGTTFIPFSQFPPKILRQDCFYHSTPALKAPPSIQNLHSCEN 61
           ++WLVGDGI++EEQ+KA +GT F+PFS FPP  LR+DCFY STPA++ P S QN+ SCEN
Sbjct: 512 KVWLVGDGIENEEQMKAKEGTLFVPFSHFPPNKLRKDCFYQSTPAMRVPKSAQNIDSCEN 571

Query: 62  WLPRRVMSAWRVAGMVYAMEGWTEHECGDA--MFNVEQVWRASLRHGFQP 110
           WL RRVMSAW++ G+V+A+EGW EH+CG+   +  +  +W A+LRH FQP
Sbjct: 572 WLGRRVMSAWKIGGIVHALEGWEEHDCGNTCNVLRLHAIWEAALRHDFQP 621

[Close]

BLAST of Cla021362 vs. Swiss-Prot
Match: CER1_ARATH (Protein ECERIFERUM 1 OS=Arabidopsis thaliana GN=CER1 PE=1 SV=1)

HSP 1 Score: 156.0 bits (393), Expect = 2.5e-37
Identity = 70/114 (61.40%), Postives = 86/114 (75.44%), Query Frame = 1


Query: 2   QIWLVGDGIKDEEQLKAPKGTTFIPFSQFPPKILRQDCFYHSTPALKAPPSIQNLHSCEN 61
           ++WLVG+G   EEQ KA KGT FIPFSQFP K LR+DC YH+TPAL  P S+ N+HSCEN
Sbjct: 510 KVWLVGEGTTREEQEKATKGTLFIPFSQFPLKQLRRDCIYHTTPALIVPKSLVNVHSCEN 569

Query: 62  WLPRRVMSAWRVAGMVYAMEGWTEHECGDAMF--NVEQVWRASLRHGFQPFKMP 114
           WLPR+ MSA RVAG+++A+EGW  HECG ++   +++QVW A L HGFQP  +P
Sbjct: 570 WLPRKAMSATRVAGILHALEGWEMHECGTSLLLSDLDQVWEACLSHGFQPLLLP 623

[Close]

BLAST of Cla021362 vs. TrEMBL
Match: A0A0A0L6K5_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_3G127750 PE=3 SV=1)

HSP 1 Score: 221.5 bits (563), Expect = 5.5e-55
Identity = 99/116 (85.34%), Postives = 111/116 (95.69%), Query Frame = 1


Query: 3   IWLVGDGIKDEEQLKAPKGTTFIPFSQFPPKILRQDCFYHSTPALKAPPSIQNLHSCENW 62
           IWLVG+G++DEEQLKAPKGTTFIPFSQFPPK+LR+DCFYH TPALKAPPS+QNLHSCENW
Sbjct: 519 IWLVGEGVRDEEQLKAPKGTTFIPFSQFPPKVLRKDCFYHYTPALKAPPSLQNLHSCENW 578

Query: 63  LPRRVMSAWRVAGMVYAMEGWTEHECGDAMFNVEQVWRASLRHGFQPFK-MPTTIA 118
           LPRRVMSAWRVAG+V+AMEGWTEHECGDAMF+VEQVW ASL+HGFQP + MP+T A
Sbjct: 579 LPRRVMSAWRVAGIVHAMEGWTEHECGDAMFDVEQVWLASLQHGFQPLEIMPSTTA 634

[Close]

BLAST of Cla021362 vs. TrEMBL
Match: A0A0A0L3Y2_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_3G127760 PE=3 SV=1)

HSP 1 Score: 203.8 bits (517), Expect = 1.2e-49
Identity = 87/112 (77.68%), Postives = 102/112 (91.07%), Query Frame = 1


Query: 3   IWLVGDGIKDEEQLKAPKGTTFIPFSQFPPKILRQDCFYHSTPALKAPPSIQNLHSCENW 62
           IWLVGDG+ +EEQ+KAPKGTTFIPFSQ PPKI+R+DCFYH TPA+KAP SI+N+HSCENW
Sbjct: 508 IWLVGDGLTNEEQMKAPKGTTFIPFSQLPPKIVRKDCFYHCTPAMKAPRSIENVHSCENW 567

Query: 63  LPRRVMSAWRVAGMVYAMEGWTEHECGDAMFNVEQVWRASLRHGFQPFKMPT 115
           LPRRVMSAWR+AG+V+AMEGWTEHECG  M N++QVW+A+LRHGFQP   PT
Sbjct: 568 LPRRVMSAWRIAGVVHAMEGWTEHECGYTMSNIDQVWKATLRHGFQPVTTPT 619

[Close]

BLAST of Cla021362 vs. TrEMBL
Match: A0A0A0L978_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_3G127770 PE=3 SV=1)

HSP 1 Score: 200.7 bits (509), Expect = 1.0e-48
Identity = 84/107 (78.50%), Postives = 101/107 (94.39%), Query Frame = 1


Query: 3   IWLVGDGIKDEEQLKAPKGTTFIPFSQFPPKILRQDCFYHSTPALKAPPSIQNLHSCENW 62
           IWLVG+G+ DEEQLKAPKGTTFIPFSQFPPKI+R+DCFYH TPA+KAPPS++N+HSCENW
Sbjct: 496 IWLVGEGLTDEEQLKAPKGTTFIPFSQFPPKIVRKDCFYHCTPAMKAPPSLENMHSCENW 555

Query: 63  LPRRVMSAWRVAGMVYAMEGWTEHECGDAMFNVEQVWRASLRHGFQP 110
           LPRRVMSAWR+AG+V+AMEGWTEHECG  M ++++VW+A+L HGFQP
Sbjct: 556 LPRRVMSAWRIAGVVHAMEGWTEHECGYGMSDIDRVWKATLGHGFQP 602

[Close]

BLAST of Cla021362 vs. TrEMBL
Match: M5X1V2_PRUPE (Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa002770mg PE=3 SV=1)

HSP 1 Score: 193.7 bits (491), Expect = 1.2e-46
Identity = 80/114 (70.18%), Postives = 102/114 (89.47%), Query Frame = 1


Query: 2   QIWLVGDGIKDEEQLKAPKGTTFIPFSQFPPKILRQDCFYHSTPALKAPPSIQNLHSCEN 61
           +IWLVGDG+ +EEQL+APKGT F+PFSQFPPK LR+DCFYH TPA+K PPS++N+H+CEN
Sbjct: 518 KIWLVGDGLSEEEQLRAPKGTLFVPFSQFPPKKLRKDCFYHYTPAMKTPPSLENVHACEN 577

Query: 62  WLPRRVMSAWRVAGMVYAMEGWTEHECGDAMFNVEQVWRASLRHGFQPFKMPTT 116
           WLPRRVMSAWR+AG+V+A+EGW EHECG  M N+++VW+A+L+HGFQP  + TT
Sbjct: 578 WLPRRVMSAWRIAGIVHALEGWKEHECGYNMSNIDKVWQATLQHGFQPLIISTT 631

[Close]

BLAST of Cla021362 vs. TrEMBL
Match: M5XRU2_PRUPE (Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa002903mg PE=3 SV=1)

HSP 1 Score: 193.7 bits (491), Expect = 1.2e-46
Identity = 80/114 (70.18%), Postives = 102/114 (89.47%), Query Frame = 1


Query: 2   QIWLVGDGIKDEEQLKAPKGTTFIPFSQFPPKILRQDCFYHSTPALKAPPSIQNLHSCEN 61
           +IWLVGDG+ +EEQL+APKGT F+PFSQFPPK LR+DCFYH TPA+K PPS++N+H+CEN
Sbjct: 506 KIWLVGDGLSEEEQLRAPKGTLFVPFSQFPPKKLRKDCFYHYTPAMKTPPSLENVHACEN 565

Query: 62  WLPRRVMSAWRVAGMVYAMEGWTEHECGDAMFNVEQVWRASLRHGFQPFKMPTT 116
           WLPRRVMSAWR+AG+V+A+EGW EHECG  M N+++VW+A+L+HGFQP  + TT
Sbjct: 566 WLPRRVMSAWRIAGIVHALEGWKEHECGYNMSNIDKVWQATLQHGFQPLIISTT 619

[Close]

BLAST of Cla021362 vs. NCBI nr
Match: gi|659075641|ref|XP_008438252.1| (PREDICTED: protein ECERIFERUM 1-like [Cucumis melo])

HSP 1 Score: 223.4 bits (568), Expect = 2.1e-55
Identity = 100/115 (86.96%), Postives = 108/115 (93.91%), Query Frame = 1


Query: 3   IWLVGDGIKDEEQLKAPKGTTFIPFSQFPPKILRQDCFYHSTPALKAPPSIQNLHSCENW 62
           IWLVGDGI+DEEQLKAPKGTTFIPFSQFPPKILR+DCFYH TPALK P S+QNLHSCENW
Sbjct: 521 IWLVGDGIRDEEQLKAPKGTTFIPFSQFPPKILRKDCFYHYTPALKVPSSLQNLHSCENW 580

Query: 63  LPRRVMSAWRVAGMVYAMEGWTEHECGDAMFNVEQVWRASLRHGFQPFKMPTTIA 118
           LPRRVMSAWRVAG+V+AMEGWTEHECGDA+F+VEQVW ASLRHGFQP +MP T A
Sbjct: 581 LPRRVMSAWRVAGIVHAMEGWTEHECGDAIFDVEQVWLASLRHGFQPLEMPATTA 635

[Close]

BLAST of Cla021362 vs. NCBI nr
Match: gi|778677638|ref|XP_011650828.1| (PREDICTED: protein ECERIFERUM 1-like [Cucumis sativus])

HSP 1 Score: 221.5 bits (563), Expect = 7.9e-55
Identity = 99/116 (85.34%), Postives = 111/116 (95.69%), Query Frame = 1


Query: 3   IWLVGDGIKDEEQLKAPKGTTFIPFSQFPPKILRQDCFYHSTPALKAPPSIQNLHSCENW 62
           IWLVG+G++DEEQLKAPKGTTFIPFSQFPPK+LR+DCFYH TPALKAPPS+QNLHSCENW
Sbjct: 519 IWLVGEGVRDEEQLKAPKGTTFIPFSQFPPKVLRKDCFYHYTPALKAPPSLQNLHSCENW 578

Query: 63  LPRRVMSAWRVAGMVYAMEGWTEHECGDAMFNVEQVWRASLRHGFQPFK-MPTTIA 118
           LPRRVMSAWRVAG+V+AMEGWTEHECGDAMF+VEQVW ASL+HGFQP + MP+T A
Sbjct: 579 LPRRVMSAWRVAGIVHAMEGWTEHECGDAMFDVEQVWLASLQHGFQPLEIMPSTTA 634

[Close]

BLAST of Cla021362 vs. NCBI nr
Match: gi|700201531|gb|KGN56664.1| (hypothetical protein Csa_3G127750 [Cucumis sativus])

HSP 1 Score: 221.5 bits (563), Expect = 7.9e-55
Identity = 99/116 (85.34%), Postives = 111/116 (95.69%), Query Frame = 1


Query: 3   IWLVGDGIKDEEQLKAPKGTTFIPFSQFPPKILRQDCFYHSTPALKAPPSIQNLHSCENW 62
           IWLVG+G++DEEQLKAPKGTTFIPFSQFPPK+LR+DCFYH TPALKAPPS+QNLHSCENW
Sbjct: 519 IWLVGEGVRDEEQLKAPKGTTFIPFSQFPPKVLRKDCFYHYTPALKAPPSLQNLHSCENW 578

Query: 63  LPRRVMSAWRVAGMVYAMEGWTEHECGDAMFNVEQVWRASLRHGFQPFK-MPTTIA 118
           LPRRVMSAWRVAG+V+AMEGWTEHECGDAMF+VEQVW ASL+HGFQP + MP+T A
Sbjct: 579 LPRRVMSAWRVAGIVHAMEGWTEHECGDAMFDVEQVWLASLQHGFQPLEIMPSTTA 634

[Close]

BLAST of Cla021362 vs. NCBI nr
Match: gi|659075662|ref|XP_008438262.1| (PREDICTED: protein ECERIFERUM 1-like isoform X1 [Cucumis melo])

HSP 1 Score: 205.7 bits (522), Expect = 4.5e-50
Identity = 87/112 (77.68%), Postives = 103/112 (91.96%), Query Frame = 1


Query: 2   QIWLVGDGIKDEEQLKAPKGTTFIPFSQFPPKILRQDCFYHSTPALKAPPSIQNLHSCEN 61
           QIWLVG+G+ DEEQLKAPKGTTFIPFSQFPPKILR+DCFYH TPA+KAPPS++N+HSCEN
Sbjct: 504 QIWLVGEGLTDEEQLKAPKGTTFIPFSQFPPKILRKDCFYHCTPAMKAPPSLENMHSCEN 563

Query: 62  WLPRRVMSAWRVAGMVYAMEGWTEHECGDAMFNVEQVWRASLRHGFQPFKMP 114
           WLPRRVMSAWR+AG+V+AMEGWTEHECG  M ++++VW+A+L HGFQP   P
Sbjct: 564 WLPRRVMSAWRIAGVVHAMEGWTEHECGYGMSDIDRVWKATLGHGFQPLDTP 615

[Close]

BLAST of Cla021362 vs. NCBI nr
Match: gi|659075666|ref|XP_008438264.1| (PREDICTED: protein ECERIFERUM 1-like isoform X3 [Cucumis melo])

HSP 1 Score: 205.7 bits (522), Expect = 4.5e-50
Identity = 87/112 (77.68%), Postives = 103/112 (91.96%), Query Frame = 1


Query: 2   QIWLVGDGIKDEEQLKAPKGTTFIPFSQFPPKILRQDCFYHSTPALKAPPSIQNLHSCEN 61
           QIWLVG+G+ DEEQLKAPKGTTFIPFSQFPPKILR+DCFYH TPA+KAPPS++N+HSCEN
Sbjct: 376 QIWLVGEGLTDEEQLKAPKGTTFIPFSQFPPKILRKDCFYHCTPAMKAPPSLENMHSCEN 435

Query: 62  WLPRRVMSAWRVAGMVYAMEGWTEHECGDAMFNVEQVWRASLRHGFQPFKMP 114
           WLPRRVMSAWR+AG+V+AMEGWTEHECG  M ++++VW+A+L HGFQP   P
Sbjct: 436 WLPRRVMSAWRIAGVVHAMEGWTEHECGYGMSDIDRVWKATLGHGFQPLDTP 487

The following BLAST results are available for this feature:

BLAST of Cla021362 vs. Swiss-Prot


Match Name	E-value	Identity	Description
CERL2_ARATH	3.5e-39	62.61	Protein CER1-like 2 OS=Arabidopsis thaliana GN=At2g37700 PE=2 SV=1	[more]
CERL1_ARATH	3.0e-38	60.00	Protein CER1-like 1 OS=Arabidopsis thaliana GN=At1g02190 PE=2 SV=1	[more]
CER1_ARATH	2.5e-37	61.40	Protein ECERIFERUM 1 OS=Arabidopsis thaliana GN=CER1 PE=1 SV=1	[more]

BLAST of Cla021362 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0L6K5_CUCSA	5.5e-55	85.34	Uncharacterized protein OS=Cucumis sativus GN=Csa_3G127750 PE=3 SV=1	[more]
A0A0A0L3Y2_CUCSA	1.2e-49	77.68	Uncharacterized protein OS=Cucumis sativus GN=Csa_3G127760 PE=3 SV=1	[more]
A0A0A0L978_CUCSA	1.0e-48	78.50	Uncharacterized protein OS=Cucumis sativus GN=Csa_3G127770 PE=3 SV=1	[more]
M5X1V2_PRUPE	1.2e-46	70.18	Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa002770mg PE=3 SV=1	[more]
M5XRU2_PRUPE	1.2e-46	70.18	Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa002903mg PE=3 SV=1	[more]

BLAST of Cla021362 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|659075641\|ref\|XP_008438252.1\|	2.1e-55	86.96	PREDICTED: protein ECERIFERUM 1-like [Cucumis melo]	[more]
gi\|778677638\|ref\|XP_011650828.1\|	7.9e-55	85.34	PREDICTED: protein ECERIFERUM 1-like [Cucumis sativus]	[more]
gi\|700201531\|gb\|KGN56664.1\|	7.9e-55	85.34	hypothetical protein Csa_3G127750 [Cucumis sativus]	[more]
gi\|659075662\|ref\|XP_008438262.1\|	4.5e-50	77.68	PREDICTED: protein ECERIFERUM 1-like isoform X1 [Cucumis melo]	[more]
gi\|659075666\|ref\|XP_008438264.1\|	4.5e-50	77.68	PREDICTED: protein ECERIFERUM 1-like isoform X3 [Cucumis melo]	[more]

Annotated Terms

The following terms have been associated with this mRNA:

Vocabulary: **INTERPRO**
Term	Definition
IPR021940	Uncharacterised_Wax2_C

GO Annotation

GO Assignments

This mRNA is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006633	fatty acid biosynthetic process
biological_process	GO:0055114	oxidation-reduction process
cellular_component	GO:0016021	integral component of membrane
molecular_function	GO:0005506	iron ion binding
molecular_function	GO:0016491	oxidoreductase activity

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
Cla021362	Cla021362	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
Cla021362	Cla021362.1-protein	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Cla021362.1.cds1	Cla021362.1.cds1	CDS
Cla021362.1.cds2	Cla021362.1.cds2	CDS

InterPro

Analysis Name: InterPro Annotations of watermelon (97103)
Date Performed: 2016-09-28


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR021940	Uncharacterised domain Wax2, C-terminal	PFAM	PF12076	Wax2_C	coord: 2..109 score: 1.8
None	No IPR available	PANTHER	PTHR11863	STEROL DESATURASE	coord: 1..109 score: 3.4
None	No IPR available	PANTHER	PTHR11863:SF41	PROTEIN ECERIFERUM 1	coord: 1..109 score: 3.4