Cla021074.1 (mRNA) Watermelon (97103) v1 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Cla021074
Type	mRNA
Organism	Citrullus. lanatus (Watermelon (97103) v1)
Description	Unknown Protein (AHRD V1)
Location	Chr5 : 188768 .. 190162 (-)
Sequence length	1395

Genome Viewer

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGCCTTCGACTATTGAGATTAATGACGTAGTTCGTGATAATATCTTTCTAAATTTTGGAGATTTTGAGTCAATTGACCCGCCAACAGTCACTCAAGACAGTTTATCGATCAATGATTTTACCAACCCCCTTGATTTGTTTCATTTAAGACAAGTAATGCAAGATGAAGGTGTAGATTCCATCCCTCAAGTTTCGGATTCTCATCTCTTTGATCCTTTACAAAATCTTCCAAGGTTCTCTAGGAACCTCTTTAATTTATTTTCAGAAGAAGCTCAATTGTTGAAGTTAGTCCAACCGAAAGAGATAAAAGAGAAAATGGTTGATCCATTGGTAGTTTTGTGCAAAGAGATTTCGGTGAAATCCTCCTCTGTAATTGCAAGGAGCGATCCAGAGGTGGAAGCCATTGGTGTGAACAAGGTCCAAGAAGATCTTGAGTCCTCATTTATGAGGAAAGAAGCTTCAGAATCGAATTTATTGAAGAAAGAGACAGAAGAGCATCAGCCGGTTGATTTTCCTAAGACATTTTCAAAAGGAATTTCAAAATTGGCGTTGATTGAAGCAAAAGACAGCCTATTAAGCATTAATGCTAAAAACTCTTCACTTTCAGCCAACCGTTTTCAAGCTTTTCCTCTTCATAGAGTTAAAGCACCAACAGCCACAAACACTCATTATGAATTGGAAAATCATAACGTTTTGGCTCCCAAACATTTATTAGGCTCAATCTCTCTAGCATTTAATGAGCCGTTTTCTTCCTCCTCACCTAATTTAATTATTCCAAGCGTGGAAGACCATCACTTTCGAGCAGAAAAAACTGAAGCCCTTCCTCCCTTGGCCATTAATTCCCCACCATTATTGCTTGAATCTCCTATTGATAAGAGAAATTTGCTTCCAACTACAGCATTTCCCAAACATTATTCGCGCAAGGCTTTGTCTATTACCTCAAAAGAAAGTGAAGTAAACTTGGACGTCCCAGAAGAAAGATGTACTCGTTTGCAACTGCCTTCATTGGCTGGAAAAAATTCCCGCTCCAGCTCATCAACTTCCTTTTCCTCTATTGCTATGTCAAGGTCTATTATTGCATTCCCGGATTCATCGGTAACTTTCGTTAAAGAATTACCAAGGCTTCCTTCTCCAAGAACTCCTAAGTCTCAAAATTTTTCAGAAGATGACTCTTCAGTTAGCATAAGCAGTGACGACGATACAGAAATCTTAGCATTCAAATCCATTCCTGTCAAGGAAGAAGTCCAAGGGACAGAACTTGCTGCACTCTTTCAAAGTCCGGCTCTTAAAAAGCTTGGTCAGAATCCTAGTGAGCTTTTTACTCCATTATCCCCTTCTCAAATTCCTTCAAAATTTTCCTCTCTAATTAAAGAATGTGGCCTAGTACTTGTATAG

mRNA sequence

ATGCCTTCGACTATTGAGATTAATGACGTAGTTCGTGATAATATCTTTCTAAATTTTGGAGATTTTGAGTCAATTGACCCGCCAACAGTCACTCAAGACAGTTTATCGATCAATGATTTTACCAACCCCCTTGATTTGTTTCATTTAAGACAAGTAATGCAAGATGAAGGTGTAGATTCCATCCCTCAAGTTTCGGATTCTCATCTCTTTGATCCTTTACAAAATCTTCCAAGGTTCTCTAGGAACCTCTTTAATTTATTTTCAGAAGAAGCTCAATTGTTGAAGTTAGTCCAACCGAAAGAGATAAAAGAGAAAATGGTTGATCCATTGGTAGTTTTGTGCAAAGAGATTTCGGTGAAATCCTCCTCTGTAATTGCAAGGAGCGATCCAGAGGTGGAAGCCATTGGTGTGAACAAGGTCCAAGAAGATCTTGAGTCCTCATTTATGAGGAAAGAAGCTTCAGAATCGAATTTATTGAAGAAAGAGACAGAAGAGCATCAGCCGGTTGATTTTCCTAAGACATTTTCAAAAGGAATTTCAAAATTGGCGTTGATTGAAGCAAAAGACAGCCTATTAAGCATTAATGCTAAAAACTCTTCACTTTCAGCCAACCGTTTTCAAGCTTTTCCTCTTCATAGAGTTAAAGCACCAACAGCCACAAACACTCATTATGAATTGGAAAATCATAACGTTTTGGCTCCCAAACATTTATTAGGCTCAATCTCTCTAGCATTTAATGAGCCGTTTTCTTCCTCCTCACCTAATTTAATTATTCCAAGCGTGGAAGACCATCACTTTCGAGCAGAAAAAACTGAAGCCCTTCCTCCCTTGGCCATTAATTCCCCACCATTATTGCTTGAATCTCCTATTGATAAGAGAAATTTGCTTCCAACTACAGCATTTCCCAAACATTATTCGCGCAAGGCTTTGTCTATTACCTCAAAAGAAAGTGAAGTAAACTTGGACGTCCCAGAAGAAAGATGTACTCGTTTGCAACTGCCTTCATTGGCTGGAAAAAATTCCCGCTCCAGCTCATCAACTTCCTTTTCCTCTATTGCTATGTCAAGGTCTATTATTGCATTCCCGGATTCATCGGTAACTTTCGTTAAAGAATTACCAAGGCTTCCTTCTCCAAGAACTCCTAAGTCTCAAAATTTTTCAGAAGATGACTCTTCAGTTAGCATAAGCAGTGACGACGATACAGAAATCTTAGCATTCAAATCCATTCCTGTCAAGGAAGAAGTCCAAGGGACAGAACTTGCTGCACTCTTTCAAAGTCCGGCTCTTAAAAAGCTTGGTCAGAATCCTAGTGAGCTTTTTACTCCATTATCCCCTTCTCAAATTCCTTCAAAATTTTCCTCTCTAATTAAAGAATGTGGCCTAGTACTTGTATAG

Coding sequence (CDS)

ATGCCTTCGACTATTGAGATTAATGACGTAGTTCGTGATAATATCTTTCTAAATTTTGGAGATTTTGAGTCAATTGACCCGCCAACAGTCACTCAAGACAGTTTATCGATCAATGATTTTACCAACCCCCTTGATTTGTTTCATTTAAGACAAGTAATGCAAGATGAAGGTGTAGATTCCATCCCTCAAGTTTCGGATTCTCATCTCTTTGATCCTTTACAAAATCTTCCAAGGTTCTCTAGGAACCTCTTTAATTTATTTTCAGAAGAAGCTCAATTGTTGAAGTTAGTCCAACCGAAAGAGATAAAAGAGAAAATGGTTGATCCATTGGTAGTTTTGTGCAAAGAGATTTCGGTGAAATCCTCCTCTGTAATTGCAAGGAGCGATCCAGAGGTGGAAGCCATTGGTGTGAACAAGGTCCAAGAAGATCTTGAGTCCTCATTTATGAGGAAAGAAGCTTCAGAATCGAATTTATTGAAGAAAGAGACAGAAGAGCATCAGCCGGTTGATTTTCCTAAGACATTTTCAAAAGGAATTTCAAAATTGGCGTTGATTGAAGCAAAAGACAGCCTATTAAGCATTAATGCTAAAAACTCTTCACTTTCAGCCAACCGTTTTCAAGCTTTTCCTCTTCATAGAGTTAAAGCACCAACAGCCACAAACACTCATTATGAATTGGAAAATCATAACGTTTTGGCTCCCAAACATTTATTAGGCTCAATCTCTCTAGCATTTAATGAGCCGTTTTCTTCCTCCTCACCTAATTTAATTATTCCAAGCGTGGAAGACCATCACTTTCGAGCAGAAAAAACTGAAGCCCTTCCTCCCTTGGCCATTAATTCCCCACCATTATTGCTTGAATCTCCTATTGATAAGAGAAATTTGCTTCCAACTACAGCATTTCCCAAACATTATTCGCGCAAGGCTTTGTCTATTACCTCAAAAGAAAGTGAAGTAAACTTGGACGTCCCAGAAGAAAGATGTACTCGTTTGCAACTGCCTTCATTGGCTGGAAAAAATTCCCGCTCCAGCTCATCAACTTCCTTTTCCTCTATTGCTATGTCAAGGTCTATTATTGCATTCCCGGATTCATCGGTAACTTTCGTTAAAGAATTACCAAGGCTTCCTTCTCCAAGAACTCCTAAGTCTCAAAATTTTTCAGAAGATGACTCTTCAGTTAGCATAAGCAGTGACGACGATACAGAAATCTTAGCATTCAAATCCATTCCTGTCAAGGAAGAAGTCCAAGGGACAGAACTTGCTGCACTCTTTCAAAGTCCGGCTCTTAAAAAGCTTGGTCAGAATCCTAGTGAGCTTTTTACTCCATTATCCCCTTCTCAAATTCCTTCAAAATTTTCCTCTCTAATTAAAGAATGTGGCCTAGTACTTGTATAG

Protein sequence

MPSTIEINDVVRDNIFLNFGDFESIDPPTVTQDSLSINDFTNPLDLFHLRQVMQDEGVDSIPQVSDSHLFDPLQNLPRFSRNLFNLFSEEAQLLKLVQPKEIKEKMVDPLVVLCKEISVKSSSVIARSDPEVEAIGVNKVQEDLESSFMRKEASESNLLKKETEEHQPVDFPKTFSKGISKLALIEAKDSLLSINAKNSSLSANRFQAFPLHRVKAPTATNTHYELENHNVLAPKHLLGSISLAFNEPFSSSSPNLIIPSVEDHHFRAEKTEALPPLAINSPPLLLESPIDKRNLLPTTAFPKHYSRKALSITSKESEVNLDVPEERCTRLQLPSLAGKNSRSSSSTSFSSIAMSRSIIAFPDSSVTFVKELPRLPSPRTPKSQNFSEDDSSVSISSDDDTEILAFKSIPVKEEVQGTELAALFQSPALKKLGQNPSELFTPLSPSQIPSKFSSLIKECGLVLV

GO Annotation

GO Assignments

This mRNA is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
Cla021074	Cla021074	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
Cla021074	Cla021074.1-protein	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Cla021074.1.cds1	Cla021074.1.cds1	CDS