Cla017053.1 (mRNA) Watermelon (97103) v1 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Cla017053
Type	mRNA
Organism	Citrullus. lanatus (Watermelon (97103) v1)
Description	CFM2 alternative polyadenylation form 1 (Fragment) (AHRD V1 ***- A7UDM3_MAIZE); contains Interpro domain(s) IPR001890 RNA-binding, CRM domain
Location	Chr10 : 20533048 .. 20533926 (-)
Sequence length	717

Genome Viewer

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGTTGCAGACGCAATCTTCCTTTACTCTTAAACCCTTAGTAGACCTATCCCCTTCACCCTTCACCTTCTTCCCATCTCACCTCCATCCCACACTCATCTCCCATCCTCCTAAACCCTCCCGTTTTCTCCTCCGCTGCTCCGCCCTCGATTCCGAAACCCTCCCCAAATCCGCCATCCAAAGAATCGCCGATAAGCTTCGAAGCCTCGGCTTCACAGAGCAACCCCCTGAGCCTGTATCCGACCCTAATTCGCCCTCTGCTCCTGGAGAAATCTTTGTTCCACTGCCGAATCAGCTGCCCAAGTACCGGGTTGGGCACACGATTGACTCGAGCTGGAGCACGCCTGAGAATCCGGTTCCGGAACCGGGAACGGGGACTGCGATTAAGAGGTTTCATGAATTGAGAGATGCGGTGGAGAAGCGGAAGAAGGAGGATGGGGTGAGGCAGAAGAAGAGGGAGGAGAGAGCGCCGACTTTGGCGGAGTTGAGTTTGTCTGAGGAGGAGTTGAGGAGGCTCGGGGAAATTGGGATTAGGTTGCAGAAAAAGCTTAAGGTTGGGAAGGCTGGGATTACGGAGGGGATTGTTAACACCATACACGAACAATGGAGGCGGTCTGAGGTTGTGAAGATAGTGTGTGAAGATTTGTGTAGGTTAAACATGAAGCGGACCCATGATTTACTGGAGGTTTGGTTCTTGATTATTATTATTTATGTGTTTTCCACTCCTTCGGTTCTGTTAGCATGTTTTCGGTTCAGAGTTTGTCAAAGCAATATGGGTTCAATTATAAGTTTGGTTCTAAGCTTTTAAATACTTAATGAAGTTAGTAATAAGTCTTGAATTTATAAGGCGGTTAGGGACTTTGGTACCGGACACAAATGA

mRNA sequence

ATGTTGCAGACGCAATCTTCCTTTACTCTTAAACCCTTAGTAGACCTATCCCCTTCACCCTTCACCTTCTTCCCATCTCACCTCCATCCCACACTCATCTCCCATCCTCCTAAACCCTCCCGTTTTCTCCTCCGCTGCTCCGCCCTCGATTCCGAAACCCTCCCCAAATCCGCCATCCAAAGAATCGCCGATAAGCTTCGAAGCCTCGGCTTCACAGAGCAACCCCCTGAGCCTGTATCCGACCCTAATTCGCCCTCTGCTCCTGGAGAAATCTTTGTTCCACTGCCGAATCAGCTGCCCAAGTACCGGGTTGGGCACACGATTGACTCGAGCTGGAGCACGCCTGAGAATCCGGTTCCGGAACCGGGAACGGGGACTGCGATTAAGAGGTTTCATGAATTGAGAGATGCGGTGGAGAAGCGGAAGAAGGAGGATGGGGTGAGGCAGAAGAAGAGGGAGGAGAGAGCGCCGACTTTGGCGGAGTTGAGTTTGTCTGAGGAGGAGTTGAGGAGGCTCGGGGAAATTGGGATTAGGTTGCAGAAAAAGCTTAAGGTTGGGAAGGCTGGGATTACGGAGGGGATTGTTAACACCATACACGAACAATGGAGGCGGTCTGAGGTTGTGAAGATAGTGTGTGAAGATTTGTGTAGGTTAAACATGAAGCGGACCCATGATTTACTGGAGGCGGTTAGGGACTTTGGTACCGGACACAAATGA

Coding sequence (CDS)

ATGTTGCAGACGCAATCTTCCTTTACTCTTAAACCCTTAGTAGACCTATCCCCTTCACCCTTCACCTTCTTCCCATCTCACCTCCATCCCACACTCATCTCCCATCCTCCTAAACCCTCCCGTTTTCTCCTCCGCTGCTCCGCCCTCGATTCCGAAACCCTCCCCAAATCCGCCATCCAAAGAATCGCCGATAAGCTTCGAAGCCTCGGCTTCACAGAGCAACCCCCTGAGCCTGTATCCGACCCTAATTCGCCCTCTGCTCCTGGAGAAATCTTTGTTCCACTGCCGAATCAGCTGCCCAAGTACCGGGTTGGGCACACGATTGACTCGAGCTGGAGCACGCCTGAGAATCCGGTTCCGGAACCGGGAACGGGGACTGCGATTAAGAGGTTTCATGAATTGAGAGATGCGGTGGAGAAGCGGAAGAAGGAGGATGGGGTGAGGCAGAAGAAGAGGGAGGAGAGAGCGCCGACTTTGGCGGAGTTGAGTTTGTCTGAGGAGGAGTTGAGGAGGCTCGGGGAAATTGGGATTAGGTTGCAGAAAAAGCTTAAGGTTGGGAAGGCTGGGATTACGGAGGGGATTGTTAACACCATACACGAACAATGGAGGCGGTCTGAGGTTGTGAAGATAGTGTGTGAAGATTTGTGTAGGTTAAACATGAAGCGGACCCATGATTTACTGGAGGCGGTTAGGGACTTTGGTACCGGACACAAATGA

Protein sequence

MLQTQSSFTLKPLVDLSPSPFTFFPSHLHPTLISHPPKPSRFLLRCSALDSETLPKSAIQRIADKLRSLGFTEQPPEPVSDPNSPSAPGEIFVPLPNQLPKYRVGHTIDSSWSTPENPVPEPGTGTAIKRFHELRDAVEKRKKEDGVRQKKREERAPTLAELSLSEEELRRLGEIGIRLQKKLKVGKAGITEGIVNTIHEQWRRSEVVKIVCEDLCRLNMKRTHDLLEAVRDFGTGHK

Homology

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BLAST of Cla017053 vs. Swiss-Prot
Match: CFM2_ARATH (CRM-domain containing factor CFM2, chloroplastic OS=Arabidopsis thaliana GN=CFM2 PE=1 SV=1)

HSP 1 Score: 232.6 bits (592), Expect = 4.3e-60
Identity = 125/229 (54.59%), Postives = 160/229 (69.87%), Query Frame = 1


Query: 8   FTLKPLVDLSPSPFTFFPSHLHP-TLIS--HPPKPSRFLLRCSALDSETLPKSAIQRIAD 67
           F  +PL+     P   FP  L P TL+S  +  + +  +   SA   +TLP+SAIQRIA+
Sbjct: 6   FHQQPLILAKTFPDRIFPPFLVPNTLVSRRNVSRANSGIFCSSASGRKTLPQSAIQRIAE 65

Query: 68  KLRSLGFTEQPPEP-----VSDPNSPSAPGEIFVPLPNQLPKYRVGHTIDSSWSTPENPV 127
           KLRSLGF E+  +        + +  ++PGEIFVPLP QLP +RVGHTID+SWSTP  PV
Sbjct: 66  KLRSLGFVEEKHDSPTRRITGEESGKNSPGEIFVPLPKQLPIHRVGHTIDTSWSTPSYPV 125

Query: 128 PEPGTGTAIKRFHELRDAVEKRKKEDGVRQKKREERAPTLAELSLSEEELRRLGEIGIRL 187
           P+PG+GTAI R+HEL+   +K  +     ++K+EE+ P+LAEL+L   ELRRL  +GIRL
Sbjct: 126 PKPGSGTAISRYHELKRVWKKETE----MERKKEEKVPSLAELTLPPAELRRLRTVGIRL 185

Query: 188 QKKLKVGKAGITEGIVNTIHEQWRRSEVVKIVCEDLCRLNMKRTHDLLE 229
            KKLK+GKAGITEGIVN IHE+WR +EVVKI CED+ R+NMKRTHD+LE
Sbjct: 186 TKKLKIGKAGITEGIVNGIHERWRTTEVVKIFCEDISRMNMKRTHDVLE 230

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BLAST of Cla017053 vs. Swiss-Prot
Match: CFM3B_ARATH (CRM-domain containing factor CFM3B, chloroplastic OS=Arabidopsis thaliana GN=CFM3B PE=3 SV=1)

HSP 1 Score: 77.0 bits (188), Expect = 3.0e-13
Identity = 51/172 (29.65%), Postives = 88/172 (51.16%), Query Frame = 1


Query: 57  SAIQRIADKLRSLGFTEQPPEPVSDPNSPSAPGEIFVPLPNQLPKYRVGHTIDSSWSTPE 116
           S +++I +KL+  GF ++      +        +  V     + + R G +        E
Sbjct: 123 STMEKIVEKLKKYGFVDEDQFQDKEVEQERRIEKSSVEERFYVEERRGGFS-------EE 182

Query: 117 NPVPEPGTGTAIKRFHELRDAVEKRKKEDGVRQKKREERAPTLAELSLSEEELRRLGEIG 176
           +P    G    +K   E   ++EK++  +G    K+E R  +LAE++LSE EL RL  + 
Sbjct: 183 SPFGVYGGNDEVKFPWEKVSSMEKKELVNGEWTAKKESRY-SLAEMTLSEFELNRLRNVM 242

Query: 177 IRLQKKLKVGKAGITEGIVNTIHEQWRRSEVVKIVCEDLCRLNMKRTHDLLE 229
            R + K++V  AG+T+ +V+ I E+W+ SE+V++  E    LNM+R H++LE
Sbjct: 243 FRTKSKMRVTGAGVTQAVVDAIQEKWKGSEIVRLKIEGSSALNMRRMHEILE 286

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BLAST of Cla017053 vs. Swiss-Prot
Match: CFM3_ORYSJ (CRM-domain containing factor CFM3, chloroplastic/mitochondrial OS=Oryza sativa subsp. japonica GN=CFM3 PE=3 SV=1)

HSP 1 Score: 75.1 bits (183), Expect = 1.2e-12
Identity = 57/184 (30.98%), Postives = 81/184 (44.02%), Query Frame = 1


Query: 51  SETLPKSAIQRIADKLRSLGFTEQPPEPVSDPNSPSAPGEIFVPLPNQLPKYRVGHTIDS 110
           S +  +SA+  I  +LR+ G++  PPE    P   S   ++F      +P  R G   D+
Sbjct: 82  SRSSSRSAMSLILSRLRNSGYSYSPPELPPRPPRGSVE-DVFRVDDGVVPNARGGFDDDA 141

Query: 111 SWSTP------ENPVPEPGTGTAIKRFHELRDAVEKRKKEDGVRQKKREERAPTLAELSL 170
             +        E P+P P  G    R                            +AEL+L
Sbjct: 142 ESALVDARFPWELPMPPPEAGPRAAR------------------------SKAWMAELTL 201

Query: 171 SEEELRRLGEIGIRLQKKLKVGKAGITEGIVNTIHEQWRRSEVVKIVCEDLCRLNMKRTH 229
            E ELRRL   G+RL+ ++KVG AG+T  IV  I ++WR  EVV+I       LNM+  H
Sbjct: 202 PEAELRRLRHAGMRLKSRIKVGGAGVTREIVERIRDRWRNDEVVRIKVTGTPALNMRLFH 240

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BLAST of Cla017053 vs. Swiss-Prot
Match: CFM3A_ARATH (CRM-domain containing factor CFM3A, chloroplastic/mitochondrial OS=Arabidopsis thaliana GN=CFM3A PE=2 SV=1)

HSP 1 Score: 73.9 bits (180), Expect = 2.6e-12
Identity = 51/176 (28.98%), Postives = 85/176 (48.30%), Query Frame = 1


Query: 57  SAIQRIADKLRSLGFTEQPPEPVSDPNSPSAPG---EIFVPLPNQLPKYRVGHTIDSSWS 116
           S +++I +KL+  G+ E+      +       G   +IF     +LP  R G T + S  
Sbjct: 117 STMEKIVEKLKKYGYMEEVQNKEIEQERRIEKGSVEDIFYVEEGKLPNTRGGFT-EESLL 176

Query: 117 TPENPVPEPG-TGTAIKRFHELRDAVEKRKKEDGVRQKKREERAPTLAELSLSEEELRRL 176
             EN +   G  G   ++         K KKE       ++E   +LAE++L E ELRRL
Sbjct: 177 GGENVIGSNGDVGFPWEKMSA------KEKKELEAEWTAKKENRYSLAEMTLPESELRRL 236

Query: 177 GEIGIRLQKKLKVGKAGITEGIVNTIHEQWRRSEVVKIVCEDLCRLNMKRTHDLLE 229
             +  R   K+++   G+T+  V+ I E+W+ +E+V++  E    LNM++ H++LE
Sbjct: 237 RNLTFRTASKMRIRGGGVTQVAVDAIKEKWKSAEIVRLKIEGASALNMRKMHEILE 285

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BLAST of Cla017053 vs. Swiss-Prot
Match: CFM3_MAIZE (CRM-domain containing factor CFM3, chloroplastic/mitochondrial OS=Zea mays GN=CFM3 PE=1 SV=1)

HSP 1 Score: 73.2 bits (178), Expect = 4.4e-12
Identity = 69/246 (28.05%), Postives = 97/246 (39.43%), Query Frame = 1


Query: 10  LKPLVDLSPSPFTFFPSHLH--------PTLISHPPKPSRFLLRCSALDSE-------TL 69
           L PL   +P P+ +  SH          P  +   P+PS      S  D E       + 
Sbjct: 20  LLPLSTSAPHPWLYSWSHPRQRGRLRAPPAALDLRPEPSP----SSDSDDEDAVGASRSS 79

Query: 70  PKSAIQRIADKLRSLGFTEQPPEPVSDPNSPSAPGE-IFVPLPNQLPKYRVGHTIDSS-- 129
            +S +  I  +LR  G++ + P   + P+ P    E +F      LP  R G   D    
Sbjct: 80  GRSTMSLILSRLRRAGYSGEDPRAAAPPHPPRGSVEDVFRADDGVLPNARGGFDADDEER 139

Query: 130 --------WSTPENPVPEPGTGTAIKRFHELRDAVEKRKKEDGVRQKKREERAPT-LAEL 189
                   W   E P+P P                             R  R+PT +AEL
Sbjct: 140 ALGDARFPW---ERPMPPPEAAP-------------------------RSARSPTWMAEL 199

Query: 190 SLSEEELRRLGEIGIRLQKKLKVGKAGITEGIVNTIHEQWRRSEVVKIVCEDLCRLNMKR 229
           +L   ELRRL    IR++ + KVG AG+T  IV  I E+W+  EVV++       LNM+ 
Sbjct: 200 TLPAAELRRLRHAAIRIKSRTKVGGAGVTREIVEKIKEKWKTEEVVRVKVSGTPALNMRL 233

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BLAST of Cla017053 vs. TrEMBL
Match: A0A0A0LC83_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_3G829150 PE=4 SV=1)

HSP 1 Score: 397.5 bits (1020), Expect = 1.1e-107
Identity = 195/228 (85.53%), Postives = 204/228 (89.47%), Query Frame = 1


Query: 1   MLQTQSSFTLKPLVDLSPSPFTFFPSHLHPTLISHPPKPSRFLLRCSALDSETLPKSAIQ 60
           ML T SSFT +PL D  PSPFTFFPSH HPTLIS PPK SRFLLRC ++DSETLPKSAIQ
Sbjct: 1   MLNTHSSFTFQPLTDQFPSPFTFFPSHFHPTLISRPPKSSRFLLRCCSIDSETLPKSAIQ 60

Query: 61  RIADKLRSLGFTEQPPEPVSDPNSPSAPGEIFVPLPNQLPKYRVGHTIDSSWSTPENPVP 120
           RIADKLRSLGFTE PPEP+ DPNSPSAPG IFVPLPNQLPKYRVGHTIDSSWS PENPVP
Sbjct: 61  RIADKLRSLGFTESPPEPLPDPNSPSAPGAIFVPLPNQLPKYRVGHTIDSSWSMPENPVP 120

Query: 121 EPGTGTAIKRFHELRDAVEKRKKEDGVRQKKREERAPTLAELSLSEEELRRLGEIGIRLQ 180
           EPGTGTAIKRFHELR  V+K KK DGVR+KKREERAP+LAELSL+EEEL RL  IGIRL+
Sbjct: 121 EPGTGTAIKRFHELRGEVQKWKKRDGVREKKREERAPSLAELSLTEEELGRLRTIGIRLK 180

Query: 181 KKLKVGKAGITEGIVNTIHEQWRRSEVVKIVCEDLCRLNMKRTHDLLE 229
           KKL VGKAGITEGIVNTIHE WRRSEVVKI CEDLCRLNMKRTHDLLE
Sbjct: 181 KKLNVGKAGITEGIVNTIHEYWRRSEVVKIACEDLCRLNMKRTHDLLE 228

[Close]

BLAST of Cla017053 vs. TrEMBL
Match: A0A0A0LC83_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_3G829150 PE=4 SV=1)

HSP 1 Score: 48.9 bits (115), Expect = 9.9e-03
Identity = 28/97 (28.87%), Postives = 53/97 (54.64%), Query Frame = 1


Query: 133 ELRDAVEKRKKEDGVRQKKREE---RAPTLAELSLSEEELRRLGEIGIRLQKKLKVGKAG 192
           +L  A+EK+ K +    K  EE   + P + +  ++ EE   L ++G+R++  L +G+ G
Sbjct: 532 KLSIALEKKAKAEEFLAKLEEEEKLQQPEIDKEGITVEERYMLKKVGLRMKPFLLLGRRG 591

Query: 193 ITEGIVNTIHEQWRRSEVVKIVCEDLCRLNMKRTHDL 227
           + +G V  +H  W+  E+VKI+  +    + K  HD+
Sbjct: 592 VFDGTVENMHLHWKYRELVKIITNE---RSFKTVHDV 625

HSP 2 Score: 282.7 bits (722), Expect = 4.1e-73
Identity = 152/224 (67.86%), Postives = 174/224 (77.68%), Query Frame = 1


Query: 6   SSFTLKPLVDLSPSPFTFFPSHLHPTLISHPPKPSRFLLRCSALDSETL-PKSAIQRIAD 65
           S F  K L D S SPF  FP     TL S  PKPS+F +R S   ++TL PKSAIQRIA+
Sbjct: 11  SPFPPKILTDQSLSPFFSFPK----TLPSQNPKPSKFAIRSSTTGTKTLAPKSAIQRIAE 70

Query: 66  KLRSLGFTEQPPEPVSDPNSPSAPGEIFVPLPNQLPKYRVGHTIDSSWSTPENPVPEPGT 125
           KLRSLGFTE   +P   P++  A GEIFVPLP +LPKYRVGHT+DSSWSTPENPVPEPGT
Sbjct: 71  KLRSLGFTENNEKPQPQPDTKYA-GEIFVPLPQRLPKYRVGHTLDSSWSTPENPVPEPGT 130

Query: 126 GTAIKRFHELRDAVEKRKKEDGVRQKKREERAPTLAELSLSEEELRRLGEIGIRLQKKLK 185
           G AI RFHELR  V+K+K+ +  +  K+EER PTLAELSL + ELRRL  +GI L+KKLK
Sbjct: 131 GRAIARFHELRREVKKQKELE--KTGKKEERVPTLAELSLGKGELRRLTTVGIGLRKKLK 190

Query: 186 VGKAGITEGIVNTIHEQWRRSEVVKIVCEDLCRLNMKRTHDLLE 229
           +GKAGITEGIVN IHE WRRSEVVKIVCEDLCR+NMKRTHD+LE
Sbjct: 191 IGKAGITEGIVNGIHENWRRSEVVKIVCEDLCRMNMKRTHDMLE 227

[Close]

BLAST of Cla017053 vs. TrEMBL
Match: M5WWV0_PRUPE (Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa000515mg PE=4 SV=1)

HSP 1 Score: 49.3 bits (116), Expect = 7.6e-03
Identity = 26/100 (26.00%), Postives = 54/100 (54.00%), Query Frame = 1


Query: 133 ELRDAVEKRKKEDGVRQKKREERAPTLAELS---LSEEELRRLGEIGIRLQKKLKVGKAG 192
           +L  A+EK+ K + +  +      P   E+    +++EE   L ++G+R++  L +G+ G
Sbjct: 543 KLSMALEKKAKAEKLLAELENAAIPQQPEIDKEGITKEERYMLRKVGLRMKPFLLMGRRG 602

Query: 193 ITEGIVNTIHEQWRRSEVVKIVCEDLCRLNMKRTHDLLEA 230
           + +G +  +H  W+  E+VKI+C +     +++    LEA
Sbjct: 603 VFDGTIENMHLHWKYRELVKIICNEKSIEAVQQVAQTLEA 642

HSP 2 Score: 266.5 bits (680), Expect = 3.0e-68
Identity = 142/217 (65.44%), Postives = 168/217 (77.42%), Query Frame = 1


Query: 17  SPSP-FTFFPSHLHP-TLISHPPKPSRFLLRCSALDSETLPKSAIQRIADKLRSLGFT-- 76
           SP+P FT  P  + P T  +  PKPS+F+LR S  D++TLPK+AIQRIA+KLRSLG+   
Sbjct: 230 SPTPTFTSSPPSISPSTFKTLNPKPSKFILRASNPDAQTLPKTAIQRIAEKLRSLGYVDG 289

Query: 77  -EQPPEPVSDPNSPSAPGEIFVPLPNQLPKYRVGHTIDSSWSTPENPVPEPGTGTAIKRF 136
            E      SD  +  + GEIFVPLPNQLPK+RVGHTID SWS PENPVPEPGTG  I RF
Sbjct: 290 DESRKVLSSDKPANGSAGEIFVPLPNQLPKHRVGHTIDQSWSLPENPVPEPGTGGVITRF 349

Query: 137 HELRDAVEKRKKEDGVRQKKREERAPTLAELSLSEEELRRLGEIGIRLQKKLKVGKAGIT 196
           HELR  V++ KK      +K +ERAPTLAEL+L EEELRRL  IGI+++KKLKVGKAGIT
Sbjct: 350 HELRKEVKREKK----LVRKEDERAPTLAELTLPEEELRRLKGIGIQIRKKLKVGKAGIT 409

Query: 197 EGIVNTIHEQWRRSEVVKIVCEDLCRLNMKRTHDLLE 229
           EGIVN IHE+WRR+EVVKI CED+C+LNMKRTHD+LE
Sbjct: 410 EGIVNGIHERWRRAEVVKIRCEDICKLNMKRTHDILE 442

[Close]

BLAST of Cla017053 vs. TrEMBL
Match: A5BLQ8_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_006146 PE=4 SV=1)

HSP 1 Score: 48.9 bits (115), Expect = 9.9e-03
Identity = 25/82 (30.49%), Postives = 49/82 (59.76%), Query Frame = 1


Query: 133  ELRDAVEKRKKEDGVRQKKREERAPTLAELS---LSEEELRRLGEIGIRLQKKLKVGKAG 192
            +L  A+EK+++ + +  +  E + P   E+    ++EEE   L ++G+R++  L +G+ G
Sbjct: 947  KLSMALEKKERAEKLLAELEEAQIPQQPEIDKEGITEEERYMLRKVGLRMKPFLLLGRRG 1006

Query: 193  ITEGIVNTIHEQWRRSEVVKIV 212
            I +G V  +H  W+  E+VKI+
Sbjct: 1007 IFDGTVENMHLHWKYRELVKII 1028

HSP 2 Score: 266.5 bits (680), Expect = 3.0e-68
Identity = 142/217 (65.44%), Postives = 168/217 (77.42%), Query Frame = 1


Query: 17  SPSP-FTFFPSHLHP-TLISHPPKPSRFLLRCSALDSETLPKSAIQRIADKLRSLGFT-- 76
           SP+P FT  P  + P T  +  PKPS+F+LR S  D++TLPK+AIQRIA+KLRSLG+   
Sbjct: 38  SPTPTFTSSPPSISPSTFKTLNPKPSKFILRASNPDAQTLPKTAIQRIAEKLRSLGYVDG 97

Query: 77  -EQPPEPVSDPNSPSAPGEIFVPLPNQLPKYRVGHTIDSSWSTPENPVPEPGTGTAIKRF 136
            E      SD  +  + GEIFVPLPNQLPK+RVGHTID SWS PENPVPEPGTG  I RF
Sbjct: 98  DESRKVLSSDKPANGSAGEIFVPLPNQLPKHRVGHTIDQSWSLPENPVPEPGTGGVITRF 157

Query: 137 HELRDAVEKRKKEDGVRQKKREERAPTLAELSLSEEELRRLGEIGIRLQKKLKVGKAGIT 196
           HELR  V++ KK      +K +ERAPTLAEL+L EEELRRL  IGI+++KKLKVGKAGIT
Sbjct: 158 HELRKEVKREKK----LVRKEDERAPTLAELTLPEEELRRLKGIGIQIRKKLKVGKAGIT 217

Query: 197 EGIVNTIHEQWRRSEVVKIVCEDLCRLNMKRTHDLLE 229
           EGIVN IHE+WRR+EVVKI CED+C+LNMKRTHD+LE
Sbjct: 218 EGIVNGIHERWRRAEVVKIRCEDICKLNMKRTHDILE 250

[Close]

BLAST of Cla017053 vs. TrEMBL
Match: F6HV32_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VIT_14s0066g01910 PE=4 SV=1)

HSP 1 Score: 48.9 bits (115), Expect = 9.9e-03
Identity = 25/82 (30.49%), Postives = 49/82 (59.76%), Query Frame = 1


Query: 133 ELRDAVEKRKKEDGVRQKKREERAPTLAELS---LSEEELRRLGEIGIRLQKKLKVGKAG 192
           +L  A+EK+++ + +  +  E + P   E+    ++EEE   L ++G+R++  L +G+ G
Sbjct: 572 KLSMALEKKERAEKLLAELEEAQIPQQPEIDKEGITEEERYMLRKVGLRMKPFLLLGRRG 631

Query: 193 ITEGIVNTIHEQWRRSEVVKIV 212
           I +G V  +H  W+  E+VKI+
Sbjct: 632 IFDGTVENMHLHWKYRELVKII 653

HSP 2 Score: 257.3 bits (656), Expect = 1.8e-65
Identity = 140/223 (62.78%), Postives = 167/223 (74.89%), Query Frame = 1


Query: 11  KPLVDLSPSPFTFFPSHLHPTLISHPPKPSRFLLRCSALDSETL-PKSAIQRIADKLRSL 70
           K L   SP P  FF S    T     PKP +F +R S  D++TL PKSAIQRI++KLRSL
Sbjct: 16  KLLTHRSP-PLFFFSSPFSTT-----PKPLKFTVRSSNADAQTLLPKSAIQRISEKLRSL 75

Query: 71  GFTEQPPEPVSDPNSPSAPGEIFVPLPNQLPKYRVGHTIDSSWSTPENPVPEPGTGTAIK 130
           GFT++ P P  +P   SA GEIFVPLP++LPK RVGHTID+SWS+PENPVPEPG+GTAIK
Sbjct: 76  GFTDENPSP--EPERSSA-GEIFVPLPHRLPKQRVGHTIDASWSSPENPVPEPGSGTAIK 135

Query: 131 RFHELRDAVEKRK----KEDGVRQKKREERAPTLAELSLSEEELRRLGEIGIRLQKKLKV 190
           RF EL+  V +++    KE     ++  ER PTLAEL L  EELRRL  +GI L+KK+KV
Sbjct: 136 RFRELKTEVRRQRREERKESAANAREERERVPTLAELRLPPEELRRLRTLGIGLRKKVKV 195

Query: 191 GKAGITEGIVNTIHEQWRRSEVVKIVCEDLCRLNMKRTHDLLE 229
           GKAGITEGIVN IHE+WR+SEVVKI CED+CR+NMKRTHDLLE
Sbjct: 196 GKAGITEGIVNGIHERWRQSEVVKIECEDICRMNMKRTHDLLE 229

[Close]

BLAST of Cla017053 vs. NCBI nr
Match: gi|449459492|ref|XP_004147480.1| (PREDICTED: chloroplastic group IIA intron splicing facilitator CRS1, chloroplastic isoform X1 [Cucumis sativus])

HSP 1 Score: 397.5 bits (1020), Expect = 1.6e-107
Identity = 195/228 (85.53%), Postives = 204/228 (89.47%), Query Frame = 1


Query: 1   MLQTQSSFTLKPLVDLSPSPFTFFPSHLHPTLISHPPKPSRFLLRCSALDSETLPKSAIQ 60
           ML T SSFT +PL D  PSPFTFFPSH HPTLIS PPK SRFLLRC ++DSETLPKSAIQ
Sbjct: 1   MLNTHSSFTFQPLTDQFPSPFTFFPSHFHPTLISRPPKSSRFLLRCCSIDSETLPKSAIQ 60

Query: 61  RIADKLRSLGFTEQPPEPVSDPNSPSAPGEIFVPLPNQLPKYRVGHTIDSSWSTPENPVP 120
           RIADKLRSLGFTE PPEP+ DPNSPSAPG IFVPLPNQLPKYRVGHTIDSSWS PENPVP
Sbjct: 61  RIADKLRSLGFTESPPEPLPDPNSPSAPGAIFVPLPNQLPKYRVGHTIDSSWSMPENPVP 120

Query: 121 EPGTGTAIKRFHELRDAVEKRKKEDGVRQKKREERAPTLAELSLSEEELRRLGEIGIRLQ 180
           EPGTGTAIKRFHELR  V+K KK DGVR+KKREERAP+LAELSL+EEEL RL  IGIRL+
Sbjct: 121 EPGTGTAIKRFHELRGEVQKWKKRDGVREKKREERAPSLAELSLTEEELGRLRTIGIRLK 180

Query: 181 KKLKVGKAGITEGIVNTIHEQWRRSEVVKIVCEDLCRLNMKRTHDLLE 229
           KKL VGKAGITEGIVNTIHE WRRSEVVKI CEDLCRLNMKRTHDLLE
Sbjct: 181 KKLNVGKAGITEGIVNTIHEYWRRSEVVKIACEDLCRLNMKRTHDLLE 228

[Close]

BLAST of Cla017053 vs. NCBI nr
Match: gi|449459492|ref|XP_004147480.1| (PREDICTED: chloroplastic group IIA intron splicing facilitator CRS1, chloroplastic isoform X1 [Cucumis sativus])

HSP 1 Score: 48.9 bits (115), Expect = 1.4e-02
Identity = 28/97 (28.87%), Postives = 53/97 (54.64%), Query Frame = 1


Query: 133 ELRDAVEKRKKEDGVRQKKREE---RAPTLAELSLSEEELRRLGEIGIRLQKKLKVGKAG 192
           +L  A+EK+ K +    K  EE   + P + +  ++ EE   L ++G+R++  L +G+ G
Sbjct: 546 KLSIALEKKAKAEEFLAKLEEEEKLQQPEIDKEGITVEERYMLKKVGLRMKPFLLLGRRG 605

Query: 193 ITEGIVNTIHEQWRRSEVVKIVCEDLCRLNMKRTHDL 227
           + +G V  +H  W+  E+VKI+  +    + K  HD+
Sbjct: 606 VFDGTVENMHLHWKYRELVKIITNE---RSFKTVHDV 639

HSP 2 Score: 397.5 bits (1020), Expect = 1.6e-107
Identity = 195/228 (85.53%), Postives = 204/228 (89.47%), Query Frame = 1


Query: 1   MLQTQSSFTLKPLVDLSPSPFTFFPSHLHPTLISHPPKPSRFLLRCSALDSETLPKSAIQ 60
           ML T SSFT +PL D  PSPFTFFPSH HPTLIS PPK SRFLLRC ++DSETLPKSAIQ
Sbjct: 1   MLNTHSSFTFQPLTDQFPSPFTFFPSHFHPTLISRPPKSSRFLLRCCSIDSETLPKSAIQ 60

Query: 61  RIADKLRSLGFTEQPPEPVSDPNSPSAPGEIFVPLPNQLPKYRVGHTIDSSWSTPENPVP 120
           RIADKLRSLGFTE PPEP+ DPNSPSAPG IFVPLPNQLPKYRVGHTIDSSWS PENPVP
Sbjct: 61  RIADKLRSLGFTESPPEPLPDPNSPSAPGAIFVPLPNQLPKYRVGHTIDSSWSMPENPVP 120

Query: 121 EPGTGTAIKRFHELRDAVEKRKKEDGVRQKKREERAPTLAELSLSEEELRRLGEIGIRLQ 180
           EPGTGTAIKRFHELR  V+K KK DGVR+KKREERAP+LAELSL+EEEL RL  IGIRL+
Sbjct: 121 EPGTGTAIKRFHELRGEVQKWKKRDGVREKKREERAPSLAELSLTEEELGRLRTIGIRLK 180

Query: 181 KKLKVGKAGITEGIVNTIHEQWRRSEVVKIVCEDLCRLNMKRTHDLLE 229
           KKL VGKAGITEGIVNTIHE WRRSEVVKI CEDLCRLNMKRTHDLLE
Sbjct: 181 KKLNVGKAGITEGIVNTIHEYWRRSEVVKIACEDLCRLNMKRTHDLLE 228

[Close]

BLAST of Cla017053 vs. NCBI nr
Match: gi|778685705|ref|XP_011652260.1| (PREDICTED: chloroplastic group IIA intron splicing facilitator CRS1, chloroplastic isoform X3 [Cucumis sativus])

HSP 1 Score: 48.9 bits (115), Expect = 1.4e-02
Identity = 28/97 (28.87%), Postives = 53/97 (54.64%), Query Frame = 1


Query: 133 ELRDAVEKRKKEDGVRQKKREE---RAPTLAELSLSEEELRRLGEIGIRLQKKLKVGKAG 192
           +L  A+EK+ K +    K  EE   + P + +  ++ EE   L ++G+R++  L +G+ G
Sbjct: 546 KLSIALEKKAKAEEFLAKLEEEEKLQQPEIDKEGITVEERYMLKKVGLRMKPFLLLGRRG 605

Query: 193 ITEGIVNTIHEQWRRSEVVKIVCEDLCRLNMKRTHDL 227
           + +G V  +H  W+  E+VKI+  +    + K  HD+
Sbjct: 606 VFDGTVENMHLHWKYRELVKIITNE---RSFKTVHDV 639

HSP 2 Score: 397.5 bits (1020), Expect = 1.6e-107
Identity = 195/228 (85.53%), Postives = 204/228 (89.47%), Query Frame = 1


Query: 1   MLQTQSSFTLKPLVDLSPSPFTFFPSHLHPTLISHPPKPSRFLLRCSALDSETLPKSAIQ 60
           ML T SSFT +PL D  PSPFTFFPSH HPTLIS PPK SRFLLRC ++DSETLPKSAIQ
Sbjct: 1   MLNTHSSFTFQPLTDQFPSPFTFFPSHFHPTLISRPPKSSRFLLRCCSIDSETLPKSAIQ 60

Query: 61  RIADKLRSLGFTEQPPEPVSDPNSPSAPGEIFVPLPNQLPKYRVGHTIDSSWSTPENPVP 120
           RIADKLRSLGFTE PPEP+ DPNSPSAPG IFVPLPNQLPKYRVGHTIDSSWS PENPVP
Sbjct: 61  RIADKLRSLGFTESPPEPLPDPNSPSAPGAIFVPLPNQLPKYRVGHTIDSSWSMPENPVP 120

Query: 121 EPGTGTAIKRFHELRDAVEKRKKEDGVRQKKREERAPTLAELSLSEEELRRLGEIGIRLQ 180
           EPGTGTAIKRFHELR  V+K KK DGVR+KKREERAP+LAELSL+EEEL RL  IGIRL+
Sbjct: 121 EPGTGTAIKRFHELRGEVQKWKKRDGVREKKREERAPSLAELSLTEEELGRLRTIGIRLK 180

Query: 181 KKLKVGKAGITEGIVNTIHEQWRRSEVVKIVCEDLCRLNMKRTHDLLE 229
           KKL VGKAGITEGIVNTIHE WRRSEVVKI CEDLCRLNMKRTHDLLE
Sbjct: 181 KKLNVGKAGITEGIVNTIHEYWRRSEVVKIACEDLCRLNMKRTHDLLE 228

[Close]

BLAST of Cla017053 vs. NCBI nr
Match: gi|700204492|gb|KGN59625.1| (hypothetical protein Csa_3G829150 [Cucumis sativus])

HSP 1 Score: 48.9 bits (115), Expect = 1.4e-02
Identity = 28/97 (28.87%), Postives = 53/97 (54.64%), Query Frame = 1


Query: 133 ELRDAVEKRKKEDGVRQKKREE---RAPTLAELSLSEEELRRLGEIGIRLQKKLKVGKAG 192
           +L  A+EK+ K +    K  EE   + P + +  ++ EE   L ++G+R++  L +G+ G
Sbjct: 532 KLSIALEKKAKAEEFLAKLEEEEKLQQPEIDKEGITVEERYMLKKVGLRMKPFLLLGRRG 591

Query: 193 ITEGIVNTIHEQWRRSEVVKIVCEDLCRLNMKRTHDL 227
           + +G V  +H  W+  E+VKI+  +    + K  HD+
Sbjct: 592 VFDGTVENMHLHWKYRELVKIITNE---RSFKTVHDV 625

HSP 2 Score: 397.5 bits (1020), Expect = 1.6e-107
Identity = 195/228 (85.53%), Postives = 204/228 (89.47%), Query Frame = 1


Query: 1   MLQTQSSFTLKPLVDLSPSPFTFFPSHLHPTLISHPPKPSRFLLRCSALDSETLPKSAIQ 60
           ML T SSFT +PL D  PSPFTFFPSH HPTLIS PPK SRFLLRC ++DSETLPKSAIQ
Sbjct: 1   MLNTHSSFTFQPLTDQFPSPFTFFPSHFHPTLISRPPKSSRFLLRCCSIDSETLPKSAIQ 60

Query: 61  RIADKLRSLGFTEQPPEPVSDPNSPSAPGEIFVPLPNQLPKYRVGHTIDSSWSTPENPVP 120
           RIADKLRSLGFTE PPEP+ DPNSPSAPG IFVPLPNQLPKYRVGHTIDSSWS PENPVP
Sbjct: 61  RIADKLRSLGFTESPPEPLPDPNSPSAPGAIFVPLPNQLPKYRVGHTIDSSWSMPENPVP 120

Query: 121 EPGTGTAIKRFHELRDAVEKRKKEDGVRQKKREERAPTLAELSLSEEELRRLGEIGIRLQ 180
           EPGTGTAIKRFHELR  V+K KK DGVR+KKREERAP+LAELSL+EEEL RL  IGIRL+
Sbjct: 121 EPGTGTAIKRFHELRGEVQKWKKRDGVREKKREERAPSLAELSLTEEELGRLRTIGIRLK 180

Query: 181 KKLKVGKAGITEGIVNTIHEQWRRSEVVKIVCEDLCRLNMKRTHDLLE 229
           KKL VGKAGITEGIVNTIHE WRRSEVVKI CEDLCRLNMKRTHDLLE
Sbjct: 181 KKLNVGKAGITEGIVNTIHEYWRRSEVVKIACEDLCRLNMKRTHDLLE 228

[Close]

BLAST of Cla017053 vs. NCBI nr
Match: gi|778685702|ref|XP_011652259.1| (PREDICTED: chloroplastic group IIA intron splicing facilitator CRS1, chloroplastic isoform X2 [Cucumis sativus])

HSP 1 Score: 48.9 bits (115), Expect = 1.4e-02
Identity = 28/97 (28.87%), Postives = 53/97 (54.64%), Query Frame = 1


Query: 133 ELRDAVEKRKKEDGVRQKKREE---RAPTLAELSLSEEELRRLGEIGIRLQKKLKVGKAG 192
           +L  A+EK+ K +    K  EE   + P + +  ++ EE   L ++G+R++  L +G+ G
Sbjct: 546 KLSIALEKKAKAEEFLAKLEEEEKLQQPEIDKEGITVEERYMLKKVGLRMKPFLLLGRRG 605

Query: 193 ITEGIVNTIHEQWRRSEVVKIVCEDLCRLNMKRTHDL 227
           + +G V  +H  W+  E+VKI+  +    + K  HD+
Sbjct: 606 VFDGTVENMHLHWKYRELVKIITNE---RSFKTVHDV 639

HSP 2 Score: 396.4 bits (1017), Expect = 3.6e-107
Identity = 193/228 (84.65%), Postives = 205/228 (89.91%), Query Frame = 1


Query: 1   MLQTQSSFTLKPLVDLSPSPFTFFPSHLHPTLISHPPKPSRFLLRCSALDSETLPKSAIQ 60
           ML+T SSF LKP  D  PSPFTFFPS  HPTLIS PPKPSRFLLRCS +DSETLPKSAIQ
Sbjct: 1   MLRTHSSFILKPSTDPFPSPFTFFPSQFHPTLISRPPKPSRFLLRCSPVDSETLPKSAIQ 60

Query: 61  RIADKLRSLGFTEQPPEPVSDPNSPSAPGEIFVPLPNQLPKYRVGHTIDSSWSTPENPVP 120
           RIADKLRSLGFTE PPEP+ DPNSPSAPG IFVPLPNQLPKYRVGHTIDSSWSTPENPVP
Sbjct: 61  RIADKLRSLGFTESPPEPLPDPNSPSAPGAIFVPLPNQLPKYRVGHTIDSSWSTPENPVP 120

Query: 121 EPGTGTAIKRFHELRDAVEKRKKEDGVRQKKREERAPTLAELSLSEEELRRLGEIGIRLQ 180
           EPGTGTAIK+FHELR  V+KRKK DG+R+KKREERAP+LAEL+L+EEEL RL  IGIRL+
Sbjct: 121 EPGTGTAIKKFHELRGEVQKRKKGDGIREKKREERAPSLAELNLTEEELARLRTIGIRLK 180

Query: 181 KKLKVGKAGITEGIVNTIHEQWRRSEVVKIVCEDLCRLNMKRTHDLLE 229
           KKL VGKAGITEGIVN+IHE WRRSEVVKI CEDLCR NMKRTHDLLE
Sbjct: 181 KKLNVGKAGITEGIVNSIHEHWRRSEVVKIACEDLCRFNMKRTHDLLE 228

The following BLAST results are available for this feature:

BLAST of Cla017053 vs. Swiss-Prot


Match Name	E-value	Identity	Description
CFM2_ARATH	4.3e-60	54.59	CRM-domain containing factor CFM2, chloroplastic OS=Arabidopsis thaliana GN=CFM2...	[more]
CFM3B_ARATH	3.0e-13	29.65	CRM-domain containing factor CFM3B, chloroplastic OS=Arabidopsis thaliana GN=CFM...	[more]
CFM3_ORYSJ	1.2e-12	30.98	CRM-domain containing factor CFM3, chloroplastic/mitochondrial OS=Oryza sativa s...	[more]
CFM3A_ARATH	2.6e-12	28.98	CRM-domain containing factor CFM3A, chloroplastic/mitochondrial OS=Arabidopsis t...	[more]
CFM3_MAIZE	4.4e-12	28.05	CRM-domain containing factor CFM3, chloroplastic/mitochondrial OS=Zea mays GN=CF...	[more]

BLAST of Cla017053 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0LC83_CUCSA	1.1e-107	85.53	Uncharacterized protein OS=Cucumis sativus GN=Csa_3G829150 PE=4 SV=1	[more]
A0A0A0LC83_CUCSA	9.9e-03	28.87	Uncharacterized protein OS=Cucumis sativus GN=Csa_3G829150 PE=4 SV=1	[more]
M5WWV0_PRUPE	7.6e-03	26.00	Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa000515mg PE=4 SV=1	[more]
A5BLQ8_VITVI	9.9e-03	30.49	Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_006146 PE=4 SV=1	[more]
F6HV32_VITVI	9.9e-03	30.49	Putative uncharacterized protein OS=Vitis vinifera GN=VIT_14s0066g01910 PE=4 SV=...	[more]

BLAST of Cla017053 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|449459492\|ref\|XP_004147480.1\|	1.6e-107	85.53	PREDICTED: chloroplastic group IIA intron splicing facilitator CRS1, chloroplast...	[more]
gi\|449459492\|ref\|XP_004147480.1\|	1.4e-02	28.87	PREDICTED: chloroplastic group IIA intron splicing facilitator CRS1, chloroplast...	[more]
gi\|778685705\|ref\|XP_011652260.1\|	1.4e-02	28.87	PREDICTED: chloroplastic group IIA intron splicing facilitator CRS1, chloroplast...	[more]
gi\|700204492\|gb\|KGN59625.1\|	1.4e-02	28.87	hypothetical protein Csa_3G829150 [Cucumis sativus]	[more]
gi\|778685702\|ref\|XP_011652259.1\|	1.4e-02	28.87	PREDICTED: chloroplastic group IIA intron splicing facilitator CRS1, chloroplast...	[more]

Annotated Terms

The following terms have been associated with this mRNA:

Vocabulary: **INTERPRO**
Term	Definition
IPR001890	RNA-binding_CRM

Vocabulary: **Molecular Function**
Term	Definition
GO:0003723	RNA binding

GO Annotation

GO Assignments

This mRNA is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0000373	Group II intron splicing
biological_process	GO:0000372	Group I intron splicing
biological_process	GO:0055114	oxidation-reduction process
cellular_component	GO:0009507	chloroplast
molecular_function	GO:0003723	RNA binding
molecular_function	GO:0010181	FMN binding
molecular_function	GO:0016491	oxidoreductase activity

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
Cla017053	Cla017053	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
Cla017053	Cla017053.1-protein	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Cla017053.1.cds2	Cla017053.1.cds2	CDS
Cla017053.1.cds1	Cla017053.1.cds1	CDS

InterPro

Analysis Name: InterPro Annotations of watermelon (97103)
Date Performed: 2016-09-28


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR001890	RNA-binding, CRM domain	GENE3D	G3DSA:3.30.110.60		coord: 163..228 score: 3.8
IPR001890	RNA-binding, CRM domain	PFAM	PF01985	CRS1_YhbY	coord: 164..228 score: 6.5
IPR001890	RNA-binding, CRM domain	SMART	SM01103	CRS1_YhbY_2	coord: 164..231 score: 0.
IPR001890	RNA-binding, CRM domain	PROFILE	PS51295	CRM	coord: 162..238 score: 14
IPR001890	RNA-binding, CRM domain	unknown	SSF75471	YhbY-like	coord: 163..229 score: 2.35
None	No IPR available	PANTHER	PTHR31846	FAMILY NOT NAMED	coord: 1..228 score: 1.0E
None	No IPR available	PANTHER	PTHR31846:SF12	RNA-BINDING PROTEIN YHBY	coord: 1..228 score: 1.0E