Cla016253.1 (mRNA) Watermelon (97103) v1 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Cla016253
Type	mRNA
Organism	Citrullus. lanatus (Watermelon (97103) v1)
Description	Ty3-gypsy retrotransposon protein (AHRD V1 ***- E5GCP6_CUCME)
Location	Chr9 : 10729294 .. 10730031 (+)
Sequence length	609

Genome Viewer

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGATTCCAAGAAAGTTGTGTCCAAATCTCCTACTGCCAGCAACACCTACACAGAACTCATCACTCGTAGTCACTCAAAGGGGGTCTTGCAGGAGAAGGAACAAGGTTATACCATCACGGAGAACATCTGGAGGCAGTTGACGAAATCCCCTAAAGGCAGGATTGTCATCAAAGAAAATCCTTTGTTTGAAAACTTTGCTCCCGCTTCTAACCAATCCAAGAAAGAATCACACCCTGATGTGATGTCTGTCATGATGGCCAATGTAACAGTAAAGGCAACCATGGCGAAAATGGAAAGGAAAATAAACCTCCTAATGAAAGTTTTTGAGGAGCGAGATCCTGAGATCGCTGCCTTAAGAGATCAGATGCAGGTTTGAGAAACTGCTAAGTCGAGTCAAACTCTCGTTGCCAAGGCGAATGACAAATGGAAAACTTAGTTATAGGAAACTCACTTGCAACAATCCATCTTTGTTGCCTCTTTGTTGGTCCAACAACTGCAGGACATGATCACAAATTCCATTAGTGTTCAGTATGGAAGGTCTTCACAAACTTCTTTCATGTACTCCAAGTCGTACACCAAGAGAATCGACAACCTCCAAATGCATGTTGGGTATCAACCCCAAAAGCTCCAACAGTTCGATGGAAAGGGCAACCCAAAGCAACACATTGTCCACTTTGTTGAAACATGCGAGAACGCAGGAACCAGAGGAGACCTGTTAGTCAAGCAGTTCGTCTGA

mRNA sequence

ATGGATTCCAAGAAAGTTGTGTCCAAATCTCCTACTGCCAGCAACACCTACACAGAACTCATCACTCGTAGTCACTCAAAGGGGGTCTTGCAGGAGAAGGAACAAGGTTATACCATCACGGAGAACATCTGGAGGCAGTTGACGAAATCCCCTAAAGGCAGGATTGTCATCAAAGAAAATCCTTTGTTTGAAAACTTTGCTCCCGCTTCTAACCAATCCAAGAAAGAATCACACCCTGATGTGATGTCTGTCATGATGGCCAATGTAACAGTAAAGGCAACCATGGCGAAAATGGAAAGGAAAATAAACCTCCTAATGAAAGTTTTTGAGGAGCGAGATCCTGAGATCGCTGCCTTAAGAGATCAGATGCAGGACATGATCACAAATTCCATTAGTGTTCAGTATGGAAGGTCTTCACAAACTTCTTTCATGTACTCCAAGTCGTACACCAAGAGAATCGACAACCTCCAAATGCATGTTGGGTATCAACCCCAAAAGCTCCAACAGTTCGATGGAAAGGGCAACCCAAAGCAACACATTGTCCACTTTGTTGAAACATGCGAGAACGCAGGAACCAGAGGAGACCTGTTAGTCAAGCAGTTCGTCTGA

Coding sequence (CDS)

ATGGATTCCAAGAAAGTTGTGTCCAAATCTCCTACTGCCAGCAACACCTACACAGAACTCATCACTCGTAGTCACTCAAAGGGGGTCTTGCAGGAGAAGGAACAAGGTTATACCATCACGGAGAACATCTGGAGGCAGTTGACGAAATCCCCTAAAGGCAGGATTGTCATCAAAGAAAATCCTTTGTTTGAAAACTTTGCTCCCGCTTCTAACCAATCCAAGAAAGAATCACACCCTGATGTGATGTCTGTCATGATGGCCAATGTAACAGTAAAGGCAACCATGGCGAAAATGGAAAGGAAAATAAACCTCCTAATGAAAGTTTTTGAGGAGCGAGATCCTGAGATCGCTGCCTTAAGAGATCAGATGCAGGACATGATCACAAATTCCATTAGTGTTCAGTATGGAAGGTCTTCACAAACTTCTTTCATGTACTCCAAGTCGTACACCAAGAGAATCGACAACCTCCAAATGCATGTTGGGTATCAACCCCAAAAGCTCCAACAGTTCGATGGAAAGGGCAACCCAAAGCAACACATTGTCCACTTTGTTGAAACATGCGAGAACGCAGGAACCAGAGGAGACCTGTTAGTCAAGCAGTTCGTCTGA

Protein sequence

MDSKKVVSKSPTASNTYTELITRSHSKGVLQEKEQGYTITENIWRQLTKSPKGRIVIKENPLFENFAPASNQSKKESHPDVMSVMMANVTVKATMAKMERKINLLMKVFEERDPEIAALRDQMQDMITNSISVQYGRSSQTSFMYSKSYTKRIDNLQMHVGYQPQKLQQFDGKGNPKQHIVHFVETCENAGTRGDLLVKQFV

Homology

[Close]

BLAST of Cla016253 vs. TrEMBL
Match: E5GB67_CUCME (Retrotransposon gag protein OS=Cucumis melo subsp. melo PE=4 SV=1)

HSP 1 Score: 217.6 bits (553), Expect = 1.4e-53
Identity = 113/185 (61.08%), Postives = 135/185 (72.97%), Query Frame = 1


Query: 30  LQEKEQGYTITENIWRQLTKSPKGRIVIKENPLFENFAPASNQSKKESHPDVMSVMMANV 89
           +QE+EQG+ + +    QL +S KG I+I++NPLF N  P SN S KESH +V+SVMM +V
Sbjct: 1   MQEQEQGFVLKKKSLEQLIESLKGGIIIRDNPLFNNSTPTSNLSDKESHLEVVSVMMIDV 60

Query: 90  TVKATMAKMERKINLLMKVFEERDPEIAALRDQMQDM------------ITNSISVQYGR 149
           T +ATMA+ME+KIN LMKV EERD EIAAL+DQM+               T+     YG 
Sbjct: 61  TAEATMAEMEKKINFLMKVVEERDHEIAALKDQMKACESAESSQTSVVKTTDKGKNVYGG 120

Query: 150 SSQTSFMYSKSYTKRIDNLQMHVGYQPQKLQQFDGKGNPKQHIVHFVETCENAGTRGDLL 203
             QTSFMYSK YTKRIDNL+M +GYQP K QQFDGKGNPKQHI HFVETCENAG+RGD L
Sbjct: 121 PPQTSFMYSKPYTKRIDNLRMPLGYQPPKFQQFDGKGNPKQHIAHFVETCENAGSRGDQL 180

[Close]

BLAST of Cla016253 vs. TrEMBL
Match: A5C4T7_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_020798 PE=4 SV=1)

HSP 1 Score: 141.7 bits (356), Expect = 9.5e-31
Identity = 77/138 (55.80%), Postives = 94/138 (68.12%), Query Frame = 1


Query: 70  SNQSKKESHPD--VMSVMMANVT-VKATMAKMERKINLLMKVFEERDPEIAALRDQM--Q 129
           SN S   + P    MSVM    T ++  +A++ R I  L K  EE+D +IA+L +++  Q
Sbjct: 84  SNHSDSFTSPFSMTMSVMTTGTTSIEEQLAEIARAIAKLTKTVEEKDMQIASLINKVETQ 143

Query: 130 DMITNSISVQYGRSSQTSFMYSKSYTKRIDNLQMHVGYQPQKLQQFDGKGNPKQHIVHFV 189
           DMITN+I  QYG  SQ++ MYSK YTKRIDNL M +GYQP K Q FDGK NPKQH+ HFV
Sbjct: 144 DMITNTIKAQYGGPSQSTLMYSKPYTKRIDNLHMPMGYQPPKFQSFDGKDNPKQHVAHFV 203

Query: 190 ETCENAGTRGDLLVKQFV 203
           ETC NAGT  DLLV QFV
Sbjct: 204 ETCNNAGTDSDLLVNQFV 221

[Close]

BLAST of Cla016253 vs. TrEMBL
Match: E5GCP6_CUCME (Ty3-gypsy retrotransposon protein OS=Cucumis melo subsp. melo PE=4 SV=1)

HSP 1 Score: 141.0 bits (354), Expect = 1.6e-30
Identity = 94/248 (37.90%), Postives = 124/248 (50.00%), Query Frame = 1


Query: 1   MDSKKVVSKSPTASNTYTELITRSHSKGVLQ--------------------EKEQGYTIT 60
           M + K  SKS  AS++Y  L+T+SH K  +Q                      + G  I 
Sbjct: 1   MATNKAASKSSVASDSYIGLVTQSHLKRSMQEQEQEQGFVLKKKSLEQLIESPKGGIIIR 60

Query: 61  EN-IWRQLTKSPK-------------------GRIVIKENPLFENFAPASNQSKKESHPD 120
           +N ++   T +                         + E     NF     + +      
Sbjct: 61  DNPLFNNSTPASNLSDKASHLEVVSVMMVDVTAEATVTEMERKINFLMKVIEERDHEIAA 120

Query: 121 VMSVMMANVTVKATMAKMERKINLLMKVFEERDPE-----IAALR-DQMQDMITNSISVQ 180
           +   M A  T +++   + +  +    V +E  P+     +A+L   Q+QDMI NSI  Q
Sbjct: 121 LKDQMKACETGESSQTPVVKATDKGKNVVQENQPQQQSVSVASLSVQQLQDMIANSIRAQ 180

Query: 181 YGRSSQTSFMYSKSYTKRIDNLQMHVGYQPQKLQQFDGKGNPKQHIVHFVETCENAGTRG 203
           YG   QTSFMYSKSYTKRIDNL+M +GYQP K QQFDG+GNPKQHI HFVETCENAG+RG
Sbjct: 181 YGGPPQTSFMYSKSYTKRIDNLRMPLGYQPPKFQQFDGRGNPKQHIAHFVETCENAGSRG 240

[Close]

BLAST of Cla016253 vs. TrEMBL
Match: E5GCE3_CUCME (Putative uncharacterized protein OS=Cucumis melo subsp. melo PE=4 SV=1)

HSP 1 Score: 137.1 bits (344), Expect = 2.3e-29
Identity = 69/128 (53.91%), Postives = 91/128 (71.09%), Query Frame = 1


Query: 1   MDSKKVVSKSPTASNTYTELITRSHSKGVLQEKEQGYTITENIWRQLTKSPKGRIVIKEN 60
           M  +KV SK+   +++YT L+T+SHSK  +QE+EQ   + +  W QL +SPKG I I+EN
Sbjct: 1   MAPRKVASKATVTNDSYTGLVTQSHSKRSIQEQEQSSVLKKKSWEQLIESPKGGINIREN 60

Query: 61  PLFENFAPASNQSKKESHPDVMSVMMANVTVKATMAKMERKINLLMKVFEERDPEIAALR 120
           PLF N  PASN S KESH +V+SV+MA VT + TM +MERKIN LMK  ++RD EI AL 
Sbjct: 61  PLFNNSTPASNLSDKESHLEVVSVIMAAVTAETTMVEMERKINFLMKAVKDRDHEITALE 120

Query: 121 DQMQDMIT 129
           DQM+  +T
Sbjct: 121 DQMKACVT 128

[Close]

BLAST of Cla016253 vs. TrEMBL
Match: E5GCM2_CUCME (Putative uncharacterized protein OS=Cucumis melo subsp. melo PE=4 SV=1)

HSP 1 Score: 125.6 bits (314), Expect = 7.1e-26
Identity = 65/115 (56.52%), Postives = 83/115 (72.17%), Query Frame = 1


Query: 5   KVVSKSPTASNTYTELITRSHSKGVLQEKEQGYTITENIWRQLTKSPKGRIVIKENPLFE 64
           KV SK+   ++TYT LI +SHSK   Q++EQ   + +  W QL +SPK  I+IKENPLFE
Sbjct: 5   KVASKAIIINDTYTRLIVQSHSKRSTQKQEQNSVLAKKSWEQLMESPKCGIIIKENPLFE 64

Query: 65  NFAPASNQSKKESHPDVMSVMMANVTVKATMAKMERKINLLMKVFEERDPEIAAL 120
           +  PASN S+KESH +V+S+MMA+VTV+A M +ME KIN LMKV EERD  I  L
Sbjct: 65  DSTPASNLSEKESHLEVVSIMMADVTVEAVMVEMEMKINFLMKVVEERDYGITVL 119

[Close]

BLAST of Cla016253 vs. NCBI nr
Match: gi|307135838|gb|ADN33709.1| (retrotransposon gag protein [Cucumis melo subsp. melo])

HSP 1 Score: 217.6 bits (553), Expect = 2.0e-53
Identity = 113/185 (61.08%), Postives = 135/185 (72.97%), Query Frame = 1


Query: 30  LQEKEQGYTITENIWRQLTKSPKGRIVIKENPLFENFAPASNQSKKESHPDVMSVMMANV 89
           +QE+EQG+ + +    QL +S KG I+I++NPLF N  P SN S KESH +V+SVMM +V
Sbjct: 1   MQEQEQGFVLKKKSLEQLIESLKGGIIIRDNPLFNNSTPTSNLSDKESHLEVVSVMMIDV 60

Query: 90  TVKATMAKMERKINLLMKVFEERDPEIAALRDQMQDM------------ITNSISVQYGR 149
           T +ATMA+ME+KIN LMKV EERD EIAAL+DQM+               T+     YG 
Sbjct: 61  TAEATMAEMEKKINFLMKVVEERDHEIAALKDQMKACESAESSQTSVVKTTDKGKNVYGG 120

Query: 150 SSQTSFMYSKSYTKRIDNLQMHVGYQPQKLQQFDGKGNPKQHIVHFVETCENAGTRGDLL 203
             QTSFMYSK YTKRIDNL+M +GYQP K QQFDGKGNPKQHI HFVETCENAG+RGD L
Sbjct: 121 PPQTSFMYSKPYTKRIDNLRMPLGYQPPKFQQFDGKGNPKQHIAHFVETCENAGSRGDQL 180

[Close]

BLAST of Cla016253 vs. NCBI nr
Match: gi|659118742|ref|XP_008459280.1| (PREDICTED: uncharacterized protein LOC103498458 [Cucumis melo])

HSP 1 Score: 206.5 bits (524), Expect = 4.5e-50
Identity = 106/176 (60.23%), Postives = 130/176 (73.86%), Query Frame = 1


Query: 41  ENIWRQLTKSPKGRIVIKENPLFENFAPASNQSKKESHPDVMSVMMANVTVKATMAKMER 100
           ++I +QL  SPK  I IKENPL++NF  A ++ KKE+HPDVMSVMM ++T +A M +MER
Sbjct: 2   QSILKQLMLSPKAGIFIKENPLYDNFDSALSKLKKEAHPDVMSVMMVDITAEAAMTEMER 61

Query: 101 KINLLMKVFEERDPEIAALRDQMQ--------------DMITNSISVQYGRSSQTSFMYS 160
           KINL+MKV +E+D +I ALR+QMQ              DMIT+SI  QYG   QTSFMYS
Sbjct: 62  KINLVMKVVKEQDHKITALREQMQIHETTKSSQTPQLQDMITSSIRAQYGGPPQTSFMYS 121

Query: 161 KSYTKRIDNLQMHVGYQPQKLQQFDGKGNPKQHIVHFVETCENAGTRGDLLVKQFV 203
           K YTKRI++L+M VGYQP K QQFD KGN  QH+ HFVETC+N G+RGD LVKQFV
Sbjct: 122 KPYTKRINDLRMPVGYQPLKFQQFDRKGNLNQHVAHFVETCKNTGSRGDQLVKQFV 177

[Close]

BLAST of Cla016253 vs. NCBI nr
Match: gi|147858200|emb|CAN81822.1| (hypothetical protein VITISV_020798 [Vitis vinifera])

HSP 1 Score: 141.7 bits (356), Expect = 1.4e-30
Identity = 77/138 (55.80%), Postives = 94/138 (68.12%), Query Frame = 1


Query: 70  SNQSKKESHPD--VMSVMMANVT-VKATMAKMERKINLLMKVFEERDPEIAALRDQM--Q 129
           SN S   + P    MSVM    T ++  +A++ R I  L K  EE+D +IA+L +++  Q
Sbjct: 84  SNHSDSFTSPFSMTMSVMTTGTTSIEEQLAEIARAIAKLTKTVEEKDMQIASLINKVETQ 143

Query: 130 DMITNSISVQYGRSSQTSFMYSKSYTKRIDNLQMHVGYQPQKLQQFDGKGNPKQHIVHFV 189
           DMITN+I  QYG  SQ++ MYSK YTKRIDNL M +GYQP K Q FDGK NPKQH+ HFV
Sbjct: 144 DMITNTIKAQYGGPSQSTLMYSKPYTKRIDNLHMPMGYQPPKFQSFDGKDNPKQHVAHFV 203

Query: 190 ETCENAGTRGDLLVKQFV 203
           ETC NAGT  DLLV QFV
Sbjct: 204 ETCNNAGTDSDLLVNQFV 221

[Close]

BLAST of Cla016253 vs. NCBI nr
Match: gi|307136441|gb|ADN34247.1| (ty3-gypsy retrotransposon protein [Cucumis melo subsp. melo])

HSP 1 Score: 141.0 bits (354), Expect = 2.3e-30
Identity = 94/248 (37.90%), Postives = 124/248 (50.00%), Query Frame = 1


Query: 1   MDSKKVVSKSPTASNTYTELITRSHSKGVLQ--------------------EKEQGYTIT 60
           M + K  SKS  AS++Y  L+T+SH K  +Q                      + G  I 
Sbjct: 1   MATNKAASKSSVASDSYIGLVTQSHLKRSMQEQEQEQGFVLKKKSLEQLIESPKGGIIIR 60

Query: 61  EN-IWRQLTKSPK-------------------GRIVIKENPLFENFAPASNQSKKESHPD 120
           +N ++   T +                         + E     NF     + +      
Sbjct: 61  DNPLFNNSTPASNLSDKASHLEVVSVMMVDVTAEATVTEMERKINFLMKVIEERDHEIAA 120

Query: 121 VMSVMMANVTVKATMAKMERKINLLMKVFEERDPE-----IAALR-DQMQDMITNSISVQ 180
           +   M A  T +++   + +  +    V +E  P+     +A+L   Q+QDMI NSI  Q
Sbjct: 121 LKDQMKACETGESSQTPVVKATDKGKNVVQENQPQQQSVSVASLSVQQLQDMIANSIRAQ 180

Query: 181 YGRSSQTSFMYSKSYTKRIDNLQMHVGYQPQKLQQFDGKGNPKQHIVHFVETCENAGTRG 203
           YG   QTSFMYSKSYTKRIDNL+M +GYQP K QQFDG+GNPKQHI HFVETCENAG+RG
Sbjct: 181 YGGPPQTSFMYSKSYTKRIDNLRMPLGYQPPKFQQFDGRGNPKQHIAHFVETCENAGSRG 240

[Close]

BLAST of Cla016253 vs. NCBI nr
Match: gi|307136319|gb|ADN34142.1| (hypothetical protein [Cucumis melo subsp. melo])

HSP 1 Score: 137.1 bits (344), Expect = 3.4e-29
Identity = 69/128 (53.91%), Postives = 91/128 (71.09%), Query Frame = 1


Query: 1   MDSKKVVSKSPTASNTYTELITRSHSKGVLQEKEQGYTITENIWRQLTKSPKGRIVIKEN 60
           M  +KV SK+   +++YT L+T+SHSK  +QE+EQ   + +  W QL +SPKG I I+EN
Sbjct: 1   MAPRKVASKATVTNDSYTGLVTQSHSKRSIQEQEQSSVLKKKSWEQLIESPKGGINIREN 60

Query: 61  PLFENFAPASNQSKKESHPDVMSVMMANVTVKATMAKMERKINLLMKVFEERDPEIAALR 120
           PLF N  PASN S KESH +V+SV+MA VT + TM +MERKIN LMK  ++RD EI AL 
Sbjct: 61  PLFNNSTPASNLSDKESHLEVVSVIMAAVTAETTMVEMERKINFLMKAVKDRDHEITALE 120

Query: 121 DQMQDMIT 129
           DQM+  +T
Sbjct: 121 DQMKACVT 128

The following BLAST results are available for this feature:

BLAST of Cla016253 vs. TrEMBL


Match Name	E-value	Identity	Description
E5GB67_CUCME	1.4e-53	61.08	Retrotransposon gag protein OS=Cucumis melo subsp. melo PE=4 SV=1	[more]
A5C4T7_VITVI	9.5e-31	55.80	Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_020798 PE=4 SV=1	[more]
E5GCP6_CUCME	1.6e-30	37.90	Ty3-gypsy retrotransposon protein OS=Cucumis melo subsp. melo PE=4 SV=1	[more]
E5GCE3_CUCME	2.3e-29	53.91	Putative uncharacterized protein OS=Cucumis melo subsp. melo PE=4 SV=1	[more]
E5GCM2_CUCME	7.1e-26	56.52	Putative uncharacterized protein OS=Cucumis melo subsp. melo PE=4 SV=1	[more]

BLAST of Cla016253 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|307135838\|gb\|ADN33709.1\|	2.0e-53	61.08	retrotransposon gag protein [Cucumis melo subsp. melo]	[more]
gi\|659118742\|ref\|XP_008459280.1\|	4.5e-50	60.23	PREDICTED: uncharacterized protein LOC103498458 [Cucumis melo]	[more]
gi\|147858200\|emb\|CAN81822.1\|	1.4e-30	55.80	hypothetical protein VITISV_020798 [Vitis vinifera]	[more]
gi\|307136441\|gb\|ADN34247.1\|	2.3e-30	37.90	ty3-gypsy retrotransposon protein [Cucumis melo subsp. melo]	[more]
gi\|307136319\|gb\|ADN34142.1\|	3.4e-29	53.91	hypothetical protein [Cucumis melo subsp. melo]	[more]

GO Annotation

GO Assignments

This mRNA is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
Cla016253	Cla016253	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
Cla016253	Cla016253.1-protein	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Cla016253.1.cds1	Cla016253.1.cds1	CDS
Cla016253.1.cds2	Cla016253.1.cds2	CDS