Cla015915.1 (mRNA) Watermelon (97103) v1 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Cla015915
Type	mRNA
Organism	Citrullus. lanatus (Watermelon (97103) v1)
Description	Myb family transcription factor (Fragment) (AHRD V1 **-- D7KSM0_ARALL); contains Interpro domain(s) IPR017877 MYB-like
Location	Chr2 : 4904582 .. 4905586 (+)
Sequence length	273

Genome Viewer

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCCTCAAGTTCTTTGAAGCAGCAGCGACCGGAGACGACGTGGACGGCAAAGCAAAACAAGCTGTTCGAGAAGGCATTGGCGTTGTATGATAAAGAGACGCCTGAGAGATGGCAGAATATCGCCATGGCGGTTGGCGAGAAGTCAGCCGACGAAGTTAAAAGACACTACGAGGTGCTCTTGGAAGATCTCCGACGGATCGAGTCCGGTCGTGTTCCTATTCCCAATTACCGGGGCGGCGGTAATAGAGATGAAGAGCTGAGGTTAGTGAAGATGATGAAAAATAGGAAACAATTATTGGATAATAACTCAAAGTTTATAAGTACTTTAATAACTATTAAATACAATACAAAAGTGTGTTTTTGTAAATTCTCTTTAAACTACACTATGGGAGTCTCTTTCAATAATTTTTCTACATTGGCTTCTTATATTACTATTACTTTTCTTCTTTTTTTCTTTTTTCAATTGGAAATCTTATCTTAAATTTTTCTAGTGATATTTTTTTATGCATATTTTTTAGGGTTCTTTTTAAATATAGCAAAAGGAACCAAAATATTTATAAATATAGCAAAATTTCACTATCTATTTGTGATAGACCGCGATAGATTGCGATAGATGATGTATTTTGCTATTAGTTGTAATATTTTCAACAGTTTTGTCATTTAAGATAATTTTTCTATTTTTTAAGATTATTAATTTTTTACCCCAATTATAATTTTCGTTTAGTTCAGCTTGTTGAAGGAAGAGATTCAAACTTCTCTCTTGGTTAAAAATATATATTCTTATCAATTGAGTACTCTATTCTAATTTTTGGCTTCCATGATATTAATTTCTAAAATCTATCTCAACATATAGCTTTTAGAAAAGGATTAAGAATATTTCAAACTATTGTAGCTGATGATGAGTATTATATATATATATATATATTGGCACTATTTCCTTTTTATCAAGTTGAATATTCTTTAGTTTTGGATTTGGAGATTTTTGTGTTCCAGGTTTAGGTGA

mRNA sequence

ATGGCCTCAAGTTCTTTGAAGCAGCAGCGACCGGAGACGACGTGGACGGCAAAGCAAAACAAGCTGTTCGAGAAGGCATTGGCGTTGTATGATAAAGAGACGCCTGAGAGATGGCAGAATATCGCCATGGCGGTTGGCGAGAAGTCAGCCGACGAAGTTAAAAGACACTACGAGGTGCTCTTGGAAGATCTCCGACGGATCGAGTCCGGTCGTGTTCCTATTCCCAATTACCGGGGCGGCGGTAATAGAGATGAAGAGCTGAGGTTTAGGTGA

Coding sequence (CDS)

ATGGCCTCAAGTTCTTTGAAGCAGCAGCGACCGGAGACGACGTGGACGGCAAAGCAAAACAAGCTGTTCGAGAAGGCATTGGCGTTGTATGATAAAGAGACGCCTGAGAGATGGCAGAATATCGCCATGGCGGTTGGCGAGAAGTCAGCCGACGAAGTTAAAAGACACTACGAGGTGCTCTTGGAAGATCTCCGACGGATCGAGTCCGGTCGTGTTCCTATTCCCAATTACCGGGGCGGCGGTAATAGAGATGAAGAGCTGAGGTTTAGGTGA

Protein sequence

MASSSLKQQRPETTWTAKQNKLFEKALALYDKETPERWQNIAMAVGEKSADEVKRHYEVLLEDLRRIESGRVPIPNYRGGGNRDEELRFR

Homology

[Close]

BLAST of Cla015915 vs. Swiss-Prot
Match: RADL5_ARATH (Protein RADIALIS-like 5 OS=Arabidopsis thaliana GN=RL5 PE=3 SV=1)

HSP 1 Score: 107.1 bits (266), Expect = 1.0e-22
Identity = 48/78 (61.54%), Postives = 62/78 (79.49%), Query Frame = 1


Query: 1  MASSSLKQQRPETTWTAKQNKLFEKALALYDKETPERWQNIAMAVGEKSADEVKRHYEVL 60
          MASSS+      ++WT+KQNK+FE+ALA+YDK+TP+RWQN+A AVG KSA+EVKRHY++L
Sbjct: 1  MASSSMSSS---SSWTSKQNKMFERALAVYDKDTPDRWQNVAKAVGSKSAEEVKRHYDIL 60

Query: 61 LEDLRRIESGRVPIPNYR 79
          +EDL  IE   VP+P Y+
Sbjct: 61 VEDLMNIEQDLVPLPKYK 75

[Close]

BLAST of Cla015915 vs. Swiss-Prot
Match: RADL3_ARATH (Protein RADIALIS-like 3 OS=Arabidopsis thaliana GN=RL3 PE=2 SV=1)

HSP 1 Score: 106.7 bits (265), Expect = 1.4e-22
Identity = 49/82 (59.76%), Postives = 61/82 (74.39%), Query Frame = 1


Query: 1  MASSSLKQQRPETTWTAKQNKLFEKALALYDKETPERWQNIAMAVGEKSADEVKRHYEVL 60
          MAS+S+       +WT K+NKLFE+ALA YD++TP+RW N+A AVG KSA+EV+RHYE+L
Sbjct: 1  MASNSMSSS---ASWTRKENKLFERALATYDQDTPDRWHNVARAVGGKSAEEVRRHYELL 60

Query: 61 LEDLRRIESGRVPIPNYRGGGN 83
          + D+  IESGR P PNYR  GN
Sbjct: 61 IRDVNDIESGRYPHPNYRSNGN 79

[Close]

BLAST of Cla015915 vs. Swiss-Prot
Match: RADL1_ARATH (Protein RADIALIS-like 1 OS=Arabidopsis thaliana GN=RL1 PE=2 SV=1)

HSP 1 Score: 106.3 bits (264), Expect = 1.8e-22
Identity = 49/81 (60.49%), Postives = 60/81 (74.07%), Query Frame = 1


Query: 1  MASSSLKQQRPETTWTAKQNKLFEKALALYDKETPERWQNIAMAVGEKSADEVKRHYEVL 60
          MASSS+  Q    +WTAKQNK FE+ALA YD++TP RWQN+A  VG K+ +EVKRHYE+L
Sbjct: 1  MASSSMSSQS-SGSWTAKQNKAFEQALATYDQDTPNRWQNVAKVVGGKTTEEVKRHYELL 60

Query: 61 LEDLRRIESGRVPIPNYRGGG 82
          ++D+  IE+G VP PNYR  G
Sbjct: 61 VQDINSIENGHVPFPNYRTSG 80

[Close]

BLAST of Cla015915 vs. Swiss-Prot
Match: RAD_ANTMA (Transcription factor RADIALIS OS=Antirrhinum majus GN=RAD PE=1 SV=1)

HSP 1 Score: 105.1 bits (261), Expect = 4.0e-22
Identity = 46/78 (58.97%), Postives = 62/78 (79.49%), Query Frame = 1


Query: 15 WTAKQNKLFEKALALYDKETPERWQNIAMAVGEKSADEVKRHYEVLLEDLRRIESGRVPI 74
          W+AK+NK FE+ALA+YDK+TP+RW N+A AV  ++ +EVK+HYE+L+ED++ IESG+VP 
Sbjct: 11 WSAKENKAFERALAVYDKDTPDRWANVARAVEGRTPEEVKKHYEILVEDIKYIESGKVPF 70

Query: 75 PNYR--GGGNRDEELRFR 91
          PNYR  GG  + +E RFR
Sbjct: 71 PNYRTTGGNMKTDEKRFR 88

[Close]

BLAST of Cla015915 vs. Swiss-Prot
Match: RADL6_ARATH (Protein RADIALIS-like 6 OS=Arabidopsis thaliana GN=RL6 PE=2 SV=1)

HSP 1 Score: 103.6 bits (257), Expect = 1.2e-21
Identity = 47/78 (60.26%), Postives = 60/78 (76.92%), Query Frame = 1


Query: 1  MASSSLKQQRPETTWTAKQNKLFEKALALYDKETPERWQNIAMAVGEKSADEVKRHYEVL 60
          MAS+S     P   WT  QNK+FE+ALA+YDK+TP+RW N+A AVG K+ +EVKRHY++L
Sbjct: 1  MASNSRSSISP---WTFSQNKMFERALAVYDKDTPDRWHNVAKAVGGKTVEEVKRHYDIL 60

Query: 61 LEDLRRIESGRVPIPNYR 79
          +EDL  IE+GRVP+PNY+
Sbjct: 61 VEDLINIETGRVPLPNYK 75

[Close]

BLAST of Cla015915 vs. TrEMBL
Match: A0A0A0K2A2_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_7G000020 PE=4 SV=1)

HSP 1 Score: 161.8 bits (408), Expect = 4.0e-37
Identity = 79/88 (89.77%), Postives = 82/88 (93.18%), Query Frame = 1


Query: 1  MASSSLKQQRPETTWTAKQNKLFEKALALYDKETPERWQNIAMAVGEKSADEVKRHYEVL 60
          MASSSLKQQRPETTWT KQNKLFEKALALYDK+TPERWQNIA AVG KSADEV+RHYE+L
Sbjct: 1  MASSSLKQQRPETTWTPKQNKLFEKALALYDKDTPERWQNIATAVGGKSADEVQRHYEIL 60

Query: 61 LEDLRRIESGRVPIPNYRGGGNRDEELR 89
          LEDLRRIESGRVPIPNYR   NRDEELR
Sbjct: 61 LEDLRRIESGRVPIPNYRRTSNRDEELR 88

[Close]

BLAST of Cla015915 vs. TrEMBL
Match: A0A061E6U2_THECC (DnaJ subfamily C member 2 OS=Theobroma cacao GN=TCM_006875 PE=4 SV=1)

HSP 1 Score: 134.8 bits (338), Expect = 5.2e-29
Identity = 65/89 (73.03%), Postives = 75/89 (84.27%), Query Frame = 1


Query: 1  MASSSLKQQRPETTWTAKQNKLFEKALALYDKETPERWQNIAMAVGEKSADEVKRHYEVL 60
          MASSSL Q R   +WTAKQNKLFEKALA YDK+TP+RW N+A AVG K+A+EVKRHYE+L
Sbjct: 1  MASSSL-QSRDSVSWTAKQNKLFEKALAKYDKDTPDRWHNVAKAVGGKTAEEVKRHYEIL 60

Query: 61 LEDLRRIESGRVPIPNYRGGGNRDEELRF 90
          +EDL+ IESGRVPIPNYR  GN DEE R+
Sbjct: 61 VEDLKHIESGRVPIPNYRSTGNADEEERY 88

[Close]

BLAST of Cla015915 vs. TrEMBL
Match: A0A151TGA1_CAJCA (Uncharacterized protein OS=Cajanus cajan GN=KK1_012369 PE=4 SV=1)

HSP 1 Score: 132.9 bits (333), Expect = 2.0e-28
Identity = 65/91 (71.43%), Postives = 77/91 (84.62%), Query Frame = 1


Query: 1  MASSSLKQQRPETTWTAKQNKLFEKALALYDKETPERWQNIAMAVGEKSADEVKRHYEVL 60
          MASSSLKQ+  +++WT KQNKLFEKALA YDK+TP+RWQN+A AVG+KSADEVKRHYE+L
Sbjct: 1  MASSSLKQKACDSSWTPKQNKLFEKALAKYDKDTPDRWQNVAKAVGDKSADEVKRHYEIL 60

Query: 61 LEDLRRIESGRVPIPNYRGGGNR---DEELR 89
          LEDLR IESGRVP+P Y+  G+    DEE R
Sbjct: 61 LEDLRHIESGRVPLPKYKSIGSSSCVDEEER 91

[Close]

BLAST of Cla015915 vs. TrEMBL
Match: A0A0B2RZB1_GLYSO (DnaJ like subfamily C member 2 OS=Glycine soja GN=glysoja_020526 PE=4 SV=1)

HSP 1 Score: 130.6 bits (327), Expect = 9.8e-28
Identity = 67/92 (72.83%), Postives = 76/92 (82.61%), Query Frame = 1


Query: 1  MASSSL-KQQRPETTWTAKQNKLFEKALALYDKETPERWQNIAMAVGEKSADEVKRHYEV 60
          MASSSL KQ+  +++WT KQNKLFEKALA YDK+TPERWQN+A AVG KSADEVKRHYE+
Sbjct: 1  MASSSLSKQKASDSSWTPKQNKLFEKALAKYDKDTPERWQNVAKAVGGKSADEVKRHYEI 60

Query: 61 LLEDLRRIESGRVPIPNYRGGG---NRDEELR 89
          LLEDLR IESGRVP+P Y+  G   N DEE R
Sbjct: 61 LLEDLRHIESGRVPLPKYKSTGSSTNVDEEER 92

[Close]

BLAST of Cla015915 vs. TrEMBL
Match: I1LJC8_SOYBN (Uncharacterized protein OS=Glycine max GN=GLYMA_11G117200 PE=4 SV=2)

HSP 1 Score: 130.6 bits (327), Expect = 9.8e-28
Identity = 67/92 (72.83%), Postives = 76/92 (82.61%), Query Frame = 1


Query: 1  MASSSL-KQQRPETTWTAKQNKLFEKALALYDKETPERWQNIAMAVGEKSADEVKRHYEV 60
          MASSSL KQ+  +++WT KQNKLFEKALA YDK+TPERWQN+A AVG KSADEVKRHYE+
Sbjct: 1  MASSSLSKQKASDSSWTPKQNKLFEKALAKYDKDTPERWQNVAKAVGGKSADEVKRHYEI 60

Query: 61 LLEDLRRIESGRVPIPNYRGGG---NRDEELR 89
          LLEDLR IESGRVP+P Y+  G   N DEE R
Sbjct: 61 LLEDLRHIESGRVPLPKYKSTGSSTNVDEEER 92

[Close]

BLAST of Cla015915 vs. NCBI nr
Match: gi|659092344|ref|XP_008447023.1| (PREDICTED: protein RADIALIS-like 3 [Cucumis melo])

HSP 1 Score: 163.3 bits (412), Expect = 2.0e-37
Identity = 79/88 (89.77%), Postives = 83/88 (94.32%), Query Frame = 1


Query: 1  MASSSLKQQRPETTWTAKQNKLFEKALALYDKETPERWQNIAMAVGEKSADEVKRHYEVL 60
          MASSSLKQQRPETTWT KQNKLFEKALALYDK+TPERWQNIA AVG KSADEV+RHYE+L
Sbjct: 1  MASSSLKQQRPETTWTPKQNKLFEKALALYDKDTPERWQNIATAVGGKSADEVQRHYEIL 60

Query: 61 LEDLRRIESGRVPIPNYRGGGNRDEELR 89
          LEDLR+IESGRVPIPNYRG  NRDEELR
Sbjct: 61 LEDLRQIESGRVPIPNYRGTSNRDEELR 88

[Close]

BLAST of Cla015915 vs. NCBI nr
Match: gi|449466753|ref|XP_004151090.1| (PREDICTED: protein RADIALIS-like 3 [Cucumis sativus])

HSP 1 Score: 161.8 bits (408), Expect = 5.7e-37
Identity = 79/88 (89.77%), Postives = 82/88 (93.18%), Query Frame = 1


Query: 1  MASSSLKQQRPETTWTAKQNKLFEKALALYDKETPERWQNIAMAVGEKSADEVKRHYEVL 60
          MASSSLKQQRPETTWT KQNKLFEKALALYDK+TPERWQNIA AVG KSADEV+RHYE+L
Sbjct: 1  MASSSLKQQRPETTWTPKQNKLFEKALALYDKDTPERWQNIATAVGGKSADEVQRHYEIL 60

Query: 61 LEDLRRIESGRVPIPNYRGGGNRDEELR 89
          LEDLRRIESGRVPIPNYR   NRDEELR
Sbjct: 61 LEDLRRIESGRVPIPNYRRTSNRDEELR 88

[Close]

BLAST of Cla015915 vs. NCBI nr
Match: gi|590685723|ref|XP_007042177.1| (DnaJ subfamily C member 2 [Theobroma cacao])

HSP 1 Score: 134.8 bits (338), Expect = 7.4e-29
Identity = 65/89 (73.03%), Postives = 75/89 (84.27%), Query Frame = 1


Query: 1  MASSSLKQQRPETTWTAKQNKLFEKALALYDKETPERWQNIAMAVGEKSADEVKRHYEVL 60
          MASSSL Q R   +WTAKQNKLFEKALA YDK+TP+RW N+A AVG K+A+EVKRHYE+L
Sbjct: 1  MASSSL-QSRDSVSWTAKQNKLFEKALAKYDKDTPDRWHNVAKAVGGKTAEEVKRHYEIL 60

Query: 61 LEDLRRIESGRVPIPNYRGGGNRDEELRF 90
          +EDL+ IESGRVPIPNYR  GN DEE R+
Sbjct: 61 VEDLKHIESGRVPIPNYRSTGNADEEERY 88

[Close]

BLAST of Cla015915 vs. NCBI nr
Match: gi|1012354898|gb|KYP66085.1| (hypothetical protein KK1_012369 [Cajanus cajan])

HSP 1 Score: 132.9 bits (333), Expect = 2.8e-28
Identity = 65/91 (71.43%), Postives = 77/91 (84.62%), Query Frame = 1


Query: 1  MASSSLKQQRPETTWTAKQNKLFEKALALYDKETPERWQNIAMAVGEKSADEVKRHYEVL 60
          MASSSLKQ+  +++WT KQNKLFEKALA YDK+TP+RWQN+A AVG+KSADEVKRHYE+L
Sbjct: 1  MASSSLKQKACDSSWTPKQNKLFEKALAKYDKDTPDRWQNVAKAVGDKSADEVKRHYEIL 60

Query: 61 LEDLRRIESGRVPIPNYRGGGNR---DEELR 89
          LEDLR IESGRVP+P Y+  G+    DEE R
Sbjct: 61 LEDLRHIESGRVPLPKYKSIGSSSCVDEEER 91

[Close]

BLAST of Cla015915 vs. NCBI nr
Match: gi|571488292|ref|XP_003537885.2| (PREDICTED: protein RADIALIS-like 4 [Glycine max])

HSP 1 Score: 130.6 bits (327), Expect = 1.4e-27
Identity = 67/92 (72.83%), Postives = 76/92 (82.61%), Query Frame = 1


Query: 1  MASSSL-KQQRPETTWTAKQNKLFEKALALYDKETPERWQNIAMAVGEKSADEVKRHYEV 60
          MASSSL KQ+  +++WT KQNKLFEKALA YDK+TPERWQN+A AVG KSADEVKRHYE+
Sbjct: 1  MASSSLSKQKASDSSWTPKQNKLFEKALAKYDKDTPERWQNVAKAVGGKSADEVKRHYEI 60

Query: 61 LLEDLRRIESGRVPIPNYRGGG---NRDEELR 89
          LLEDLR IESGRVP+P Y+  G   N DEE R
Sbjct: 61 LLEDLRHIESGRVPLPKYKSTGSSTNVDEEER 92

The following BLAST results are available for this feature:

BLAST of Cla015915 vs. Swiss-Prot


Match Name	E-value	Identity	Description
RADL5_ARATH	1.0e-22	61.54	Protein RADIALIS-like 5 OS=Arabidopsis thaliana GN=RL5 PE=3 SV=1	[more]
RADL3_ARATH	1.4e-22	59.76	Protein RADIALIS-like 3 OS=Arabidopsis thaliana GN=RL3 PE=2 SV=1	[more]
RADL1_ARATH	1.8e-22	60.49	Protein RADIALIS-like 1 OS=Arabidopsis thaliana GN=RL1 PE=2 SV=1	[more]
RAD_ANTMA	4.0e-22	58.97	Transcription factor RADIALIS OS=Antirrhinum majus GN=RAD PE=1 SV=1	[more]
RADL6_ARATH	1.2e-21	60.26	Protein RADIALIS-like 6 OS=Arabidopsis thaliana GN=RL6 PE=2 SV=1	[more]

BLAST of Cla015915 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0K2A2_CUCSA	4.0e-37	89.77	Uncharacterized protein OS=Cucumis sativus GN=Csa_7G000020 PE=4 SV=1	[more]
A0A061E6U2_THECC	5.2e-29	73.03	DnaJ subfamily C member 2 OS=Theobroma cacao GN=TCM_006875 PE=4 SV=1	[more]
A0A151TGA1_CAJCA	2.0e-28	71.43	Uncharacterized protein OS=Cajanus cajan GN=KK1_012369 PE=4 SV=1	[more]
A0A0B2RZB1_GLYSO	9.8e-28	72.83	DnaJ like subfamily C member 2 OS=Glycine soja GN=glysoja_020526 PE=4 SV=1	[more]
I1LJC8_SOYBN	9.8e-28	72.83	Uncharacterized protein OS=Glycine max GN=GLYMA_11G117200 PE=4 SV=2	[more]

BLAST of Cla015915 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|659092344\|ref\|XP_008447023.1\|	2.0e-37	89.77	PREDICTED: protein RADIALIS-like 3 [Cucumis melo]	[more]
gi\|449466753\|ref\|XP_004151090.1\|	5.7e-37	89.77	PREDICTED: protein RADIALIS-like 3 [Cucumis sativus]	[more]
gi\|590685723\|ref\|XP_007042177.1\|	7.4e-29	73.03	DnaJ subfamily C member 2 [Theobroma cacao]	[more]
gi\|1012354898\|gb\|KYP66085.1\|	2.8e-28	71.43	hypothetical protein KK1_012369 [Cajanus cajan]	[more]
gi\|571488292\|ref\|XP_003537885.2\|	1.4e-27	72.83	PREDICTED: protein RADIALIS-like 4 [Glycine max]	[more]

Annotated Terms

The following terms have been associated with this mRNA:

Vocabulary: **INTERPRO**
Term	Definition
IPR001005	SANT/Myb
IPR009057	Homeobox-like_sf
IPR017877	Myb-like_dom

Vocabulary: **Molecular Function**
Term	Definition
GO:0003677	DNA binding

GO Annotation

GO Assignments

This mRNA is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005634	nucleus
molecular_function	GO:0003677	DNA binding

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
Cla015915	Cla015915	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
Cla015915	Cla015915.1-protein	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Cla015915.1.cds1	Cla015915.1.cds1	CDS
Cla015915.1.cds2	Cla015915.1.cds2	CDS

InterPro

Analysis Name: InterPro Annotations of watermelon (97103)
Date Performed: 2016-09-28


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR001005	SANT/Myb domain	PFAM	PF00249	Myb_DNA-binding	coord: 14..60 score: 8.
IPR001005	SANT/Myb domain	SMART	SM00717	sant	coord: 11..63 score: 6.
IPR009057	Homeodomain-like	GENE3D	G3DSA:1.10.10.60		coord: 13..67 score: 7.
IPR009057	Homeodomain-like	unknown	SSF46689	Homeodomain-like	coord: 15..68 score: 1.4
IPR017877	Myb-like domain	PROFILE	PS50090	MYB_LIKE	coord: 7..61 score: 6
None	No IPR available	PANTHER	PTHR24078	DNAJ HOMOLOG SUBFAMILY C MEMBER	coord: 15..88 score: 5.9
None	No IPR available	PANTHER	PTHR24078:SF177	PROTEIN DNJ-23-RELATED	coord: 15..88 score: 5.9