Cla015864.1 (mRNA) Watermelon (97103) v1 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Cla015864
Type	mRNA
Organism	Citrullus. lanatus (Watermelon (97103) v1)
Description	Auxin-induced SAUR-like protein (AHRD V1 ***- Q8S351_CAPAN); contains Interpro domain(s) IPR003676 Auxin responsive SAUR protein
Location	Chr2 : 4233449 .. 4233751 (+)
Sequence length	303

Genome Viewer

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGGTTTCCGTTTGCCCCGAATTGTTACTGCTAAGCAAAGTCTCCAGCGATCTTCATCAACAGGAAATGGAACATCCCCAAAAGCTGTTGACGTTCCCAAGGGCTATTTTACTGTTTATGTTGGTGAGGAACAAAAGAAGCGTTTTGTCATCCCACTGTCTTACTTGAACCAGCCTTCTTTTCAAGATTTGTTGAGTCAAGCAGAAGAAGAATTTGGATATAATCATCTAATGGGTGGCATCACAATTCCTTGCCGTGAAGACGAGTTCCTCAATCTCACTCAGAGTTGGAATGGCTCGTGA

mRNA sequence

ATGGGTTTCCGTTTGCCCCGAATTGTTACTGCTAAGCAAAGTCTCCAGCGATCTTCATCAACAGGAAATGGAACATCCCCAAAAGCTGTTGACGTTCCCAAGGGCTATTTTACTGTTTATGTTGGTGAGGAACAAAAGAAGCGTTTTGTCATCCCACTGTCTTACTTGAACCAGCCTTCTTTTCAAGATTTGTTGAGTCAAGCAGAAGAAGAATTTGGATATAATCATCTAATGGGTGGCATCACAATTCCTTGCCGTGAAGACGAGTTCCTCAATCTCACTCAGAGTTGGAATGGCTCGTGA

Coding sequence (CDS)

ATGGGTTTCCGTTTGCCCCGAATTGTTACTGCTAAGCAAAGTCTCCAGCGATCTTCATCAACAGGAAATGGAACATCCCCAAAAGCTGTTGACGTTCCCAAGGGCTATTTTACTGTTTATGTTGGTGAGGAACAAAAGAAGCGTTTTGTCATCCCACTGTCTTACTTGAACCAGCCTTCTTTTCAAGATTTGTTGAGTCAAGCAGAAGAAGAATTTGGATATAATCATCTAATGGGTGGCATCACAATTCCTTGCCGTGAAGACGAGTTCCTCAATCTCACTCAGAGTTGGAATGGCTCGTGA

Protein sequence

MGFRLPRIVTAKQSLQRSSSTGNGTSPKAVDVPKGYFTVYVGEEQKKRFVIPLSYLNQPSFQDLLSQAEEEFGYNHLMGGITIPCREDEFLNLTQSWNGS

Homology

[Close]

BLAST of Cla015864 vs. Swiss-Prot
Match: AX10A_SOYBN (Auxin-induced protein X10A OS=Glycine max PE=2 SV=1)

HSP 1 Score: 120.9 bits (302), Expect = 7.7e-27
Identity = 60/98 (61.22%), Postives = 73/98 (74.49%), Query Frame = 1


Query: 1  MGFRLPRIVTAKQSLQRSSSTGNGTSPKAVDVPKGYFTVYVGEEQKKRFVIPLSYLNQPS 60
          MGFRLP I       +++S   N  S K+V+VPKGY  VYVG++  +RF+IP+SYLNQPS
Sbjct: 1  MGFRLPGI-------RKTSIAANQASSKSVEVPKGYLVVYVGDKM-RRFLIPVSYLNQPS 60

Query: 61 FQDLLSQAEEEFGYNHLMGGITIPCREDEFLNLTQSWN 99
          FQDLL+QAEEEFGY+H MGG+TIPC+EDEFL +T   N
Sbjct: 61 FQDLLNQAEEEFGYDHPMGGLTIPCKEDEFLTVTSHLN 90

[Close]

BLAST of Cla015864 vs. Swiss-Prot
Match: AX6B_SOYBN (Auxin-induced protein 6B OS=Glycine max PE=2 SV=1)

HSP 1 Score: 114.4 bits (285), Expect = 7.2e-25
Identity = 60/98 (61.22%), Postives = 70/98 (71.43%), Query Frame = 1


Query: 1  MGFRLPRIVTAKQSLQRSSSTGNGTSPKAVDVPKGYFTVYVGEEQKKRFVIPLSYLNQPS 60
          MGFRLP I       +++S + N  S KAVDV KGY  VYVGE+  +RFVIP+SYLN+PS
Sbjct: 1  MGFRLPGI-------RKASFSANQASSKAVDVEKGYLAVYVGEKM-RRFVIPVSYLNKPS 60

Query: 61 FQDLLSQAEEEFGYNHLMGGITIPCREDEFLNLTQSWN 99
          FQDLLSQAEEEFGY+H  GG+TIPC ED F ++T   N
Sbjct: 61 FQDLLSQAEEEFGYHHPNGGLTIPCSEDVFQHITSFLN 90

[Close]

BLAST of Cla015864 vs. Swiss-Prot
Match: A10A5_SOYBN (Auxin-induced protein 10A5 OS=Glycine max PE=2 SV=1)

HSP 1 Score: 113.6 bits (283), Expect = 1.2e-24
Identity = 58/98 (59.18%), Postives = 71/98 (72.45%), Query Frame = 1


Query: 1  MGFRLPRIVTAKQSLQRSSSTGNGTSPKAVDVPKGYFTVYVGEEQKKRFVIPLSYLNQPS 60
          MGFR+  IV      +R+S      + K VDVPKGY  VYVG++ + RF IP+SYLN+PS
Sbjct: 1  MGFRIAGIV------RRTSFYTTQAASKRVDVPKGYAAVYVGDKMR-RFTIPVSYLNEPS 60

Query: 61 FQDLLSQAEEEFGYNHLMGGITIPCREDEFLNLTQSWN 99
          FQ+LLSQAEEEFGY+H MGG+TIPC+E+EFLN+T   N
Sbjct: 61 FQELLSQAEEEFGYDHPMGGLTIPCKEEEFLNVTAHLN 91

[Close]

BLAST of Cla015864 vs. Swiss-Prot
Match: ARG7_VIGRR (Indole-3-acetic acid-induced protein ARG7 OS=Vigna radiata var. radiata GN=ARG7 PE=2 SV=1)

HSP 1 Score: 111.7 bits (278), Expect = 4.7e-24
Identity = 58/94 (61.70%), Postives = 66/94 (70.21%), Query Frame = 1


Query: 1  MGFRLPRIVTAKQSLQRSSSTGNGTSPKAVDVPKGYFTVYVGEEQKKRFVIPLSYLNQPS 60
          MGFRLP I       +++ S  N  S K +D PKGY  VYVGE  K RFVIP+S+LNQP 
Sbjct: 1  MGFRLPGI-------RKTLSARNEASSKVLDAPKGYLAVYVGENMK-RFVIPVSHLNQPL 60

Query: 61 FQDLLSQAEEEFGYNHLMGGITIPCREDEFLNLT 95
          FQDLLSQAEEEFGY+H MGG+TIPC ED F ++T
Sbjct: 61 FQDLLSQAEEEFGYDHPMGGLTIPCSEDLFQHIT 86

[Close]

BLAST of Cla015864 vs. Swiss-Prot
Match: AX15A_SOYBN (Auxin-induced protein 15A OS=Glycine max PE=2 SV=1)

HSP 1 Score: 109.4 bits (272), Expect = 2.3e-23
Identity = 60/98 (61.22%), Postives = 63/98 (64.29%), Query Frame = 1


Query: 1  MGFRLPRIVTAKQSLQRSSSTGNGTSPKAVDVPKGYFTVYVGEEQKKRFVIPLSYLNQPS 60
          MGFRLP I  A                KA D PKGY  VYVGE+  KRFVIP+SYLNQPS
Sbjct: 1  MGFRLPGIRKAS---------------KAADAPKGYLAVYVGEKL-KRFVIPVSYLNQPS 60

Query: 61 FQDLLSQAEEEFGYNHLMGGITIPCREDEFLNLTQSWN 99
          FQDLLSQAEEEFGY+H MGG+TIPC ED F  +T   N
Sbjct: 61 FQDLLSQAEEEFGYDHPMGGLTIPCSEDVFQCITSCLN 82

[Close]

BLAST of Cla015864 vs. TrEMBL
Match: A0A0A0K5T8_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_7G009020 PE=4 SV=1)

HSP 1 Score: 186.4 bits (472), Expect = 1.7e-44
Identity = 92/100 (92.00%), Postives = 93/100 (93.00%), Query Frame = 1


Query: 1   MGFRLPRIVTAKQSLQRSSSTGNGTSPKAVDVPKGYFTVYVGEEQKKRFVIPLSYLNQPS 60
           MGFRLPRIVTAKQSLQRSSSTGNG SPK VDVPKGYFTVYVGEE KKRFVIPLSYLNQPS
Sbjct: 1   MGFRLPRIVTAKQSLQRSSSTGNGASPKVVDVPKGYFTVYVGEEHKKRFVIPLSYLNQPS 60

Query: 61  FQDLLSQAEEEFGYNHLMGGITIPCREDEFLNLTQSWNGS 101
           FQDLLSQAEEEFGYNH MGGITIPC EDEFL+LTQS N S
Sbjct: 61  FQDLLSQAEEEFGYNHPMGGITIPCHEDEFLDLTQSLNES 100

[Close]

BLAST of Cla015864 vs. TrEMBL
Match: A0A0A0K4J0_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_7G008980 PE=4 SV=1)

HSP 1 Score: 180.6 bits (457), Expect = 9.2e-43
Identity = 89/100 (89.00%), Postives = 92/100 (92.00%), Query Frame = 1


Query: 1   MGFRLPRIVTAKQSLQRSSSTGNGTSPKAVDVPKGYFTVYVGEEQKKRFVIPLSYLNQPS 60
           MGFRLPRIVTAKQSLQRSSSTGNG SPKAVDVPKGYF VY+GEEQKKRFVIPLSYLNQPS
Sbjct: 1   MGFRLPRIVTAKQSLQRSSSTGNGASPKAVDVPKGYFAVYIGEEQKKRFVIPLSYLNQPS 60

Query: 61  FQDLLSQAEEEFGYNHLMGGITIPCREDEFLNLTQSWNGS 101
           FQDLLSQAEEEFGYNH MGGITIPC E  FL+LT+S N S
Sbjct: 61  FQDLLSQAEEEFGYNHPMGGITIPCNEAYFLDLTRSLNDS 100

[Close]

BLAST of Cla015864 vs. TrEMBL
Match: A0A0A0K160_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_7G008990 PE=4 SV=1)

HSP 1 Score: 179.1 bits (453), Expect = 2.7e-42
Identity = 88/100 (88.00%), Postives = 93/100 (93.00%), Query Frame = 1


Query: 1   MGFRLPRIVTAKQSLQRSSSTGNGTSPKAVDVPKGYFTVYVGEEQKKRFVIPLSYLNQPS 60
           MGFRLPRIVT+KQSLQRSSSTGNG SPKAVDVPKGYFTVYVGEEQKKRFVIPLSYLNQPS
Sbjct: 1   MGFRLPRIVTSKQSLQRSSSTGNGESPKAVDVPKGYFTVYVGEEQKKRFVIPLSYLNQPS 60

Query: 61  FQDLLSQAEEEFGYNHLMGGITIPCREDEFLNLTQSWNGS 101
           FQDLLSQ+EEEFGYNH MGGITIPC ED FL++T+  N S
Sbjct: 61  FQDLLSQSEEEFGYNHPMGGITIPCSEDCFLDVTERLNES 100

[Close]

BLAST of Cla015864 vs. TrEMBL
Match: A0A0A0K0H9_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_7G009010 PE=4 SV=1)

HSP 1 Score: 169.5 bits (428), Expect = 2.1e-39
Identity = 83/98 (84.69%), Postives = 88/98 (89.80%), Query Frame = 1


Query: 1  MGFRLPRIVTAKQSLQRSSSTGNGTSPKAVDVPKGYFTVYVGEEQKKRFVIPLSYLNQPS 60
          MGFRLPRIVTAK SLQRSSSTGNG SPK++DVPKGYFTVYVGE +KKRFVIPLSYLNQ S
Sbjct: 1  MGFRLPRIVTAKPSLQRSSSTGNGASPKSIDVPKGYFTVYVGEVEKKRFVIPLSYLNQSS 60

Query: 61 FQDLLSQAEEEFGYNHLMGGITIPCREDEFLNLTQSWN 99
          FQDLLSQ+EEEFGYNH MGGITIPC ED FL  T+S N
Sbjct: 61 FQDLLSQSEEEFGYNHPMGGITIPCSEDFFLYFTKSLN 98

[Close]

BLAST of Cla015864 vs. TrEMBL
Match: A0A0A0K0H6_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_7G008960 PE=4 SV=1)

HSP 1 Score: 164.5 bits (415), Expect = 6.8e-38
Identity = 84/102 (82.35%), Postives = 88/102 (86.27%), Query Frame = 1


Query: 1   MGFRLPRIVTAK--QSLQRSSSTGNGTSPKAVDVPKGYFTVYVGEEQKKRFVIPLSYLNQ 60
           MGFRLPRIVT    QSLQRSSST NG SP+A DVPKGYF VY+GEEQKKRFVIPLSYLNQ
Sbjct: 1   MGFRLPRIVTGTVTQSLQRSSSTRNGASPRANDVPKGYFAVYIGEEQKKRFVIPLSYLNQ 60

Query: 61  PSFQDLLSQAEEEFGYNHLMGGITIPCREDEFLNLTQSWNGS 101
           PSFQDLLSQAEEEFGYNH MGGITIPC E  FL+LT+S N S
Sbjct: 61  PSFQDLLSQAEEEFGYNHPMGGITIPCNEVYFLDLTRSLNDS 102

[Close]

BLAST of Cla015864 vs. NCBI nr
Match: gi|778722830|ref|XP_004144905.2| (PREDICTED: auxin-induced protein X10A-like [Cucumis sativus])

HSP 1 Score: 186.4 bits (472), Expect = 2.4e-44
Identity = 92/100 (92.00%), Postives = 93/100 (93.00%), Query Frame = 1


Query: 1   MGFRLPRIVTAKQSLQRSSSTGNGTSPKAVDVPKGYFTVYVGEEQKKRFVIPLSYLNQPS 60
           MGFRLPRIVTAKQSLQRSSSTGNG SPK VDVPKGYFTVYVGEE KKRFVIPLSYLNQPS
Sbjct: 1   MGFRLPRIVTAKQSLQRSSSTGNGASPKVVDVPKGYFTVYVGEEHKKRFVIPLSYLNQPS 60

Query: 61  FQDLLSQAEEEFGYNHLMGGITIPCREDEFLNLTQSWNGS 101
           FQDLLSQAEEEFGYNH MGGITIPC EDEFL+LTQS N S
Sbjct: 61  FQDLLSQAEEEFGYNHPMGGITIPCHEDEFLDLTQSLNES 100

[Close]

BLAST of Cla015864 vs. NCBI nr
Match: gi|659094354|ref|XP_008448015.1| (PREDICTED: LOW QUALITY PROTEIN: auxin-induced protein X10A-like [Cucumis melo])

HSP 1 Score: 180.6 bits (457), Expect = 1.3e-42
Identity = 90/100 (90.00%), Postives = 93/100 (93.00%), Query Frame = 1


Query: 1   MGFRLPRIVTAKQSLQRSSSTGNGTSPKAVDVPKGYFTVYVGEEQKKRFVIPLSYLNQPS 60
           MGFRLPRIVTAKQSLQRSSSTGN  SPKAVDVPKGYFTVYVGEEQKKRFVIPLSYLNQ S
Sbjct: 1   MGFRLPRIVTAKQSLQRSSSTGNRESPKAVDVPKGYFTVYVGEEQKKRFVIPLSYLNQTS 60

Query: 61  FQDLLSQAEEEFGYNHLMGGITIPCREDEFLNLTQSWNGS 101
           FQDLL+QAEEEFGYNH MGGITIPCRED FL+LT+S N S
Sbjct: 61  FQDLLNQAEEEFGYNHPMGGITIPCREDXFLDLTKSLNDS 100

[Close]

BLAST of Cla015864 vs. NCBI nr
Match: gi|778722823|ref|XP_011658575.1| (PREDICTED: auxin-induced protein 15A-like [Cucumis sativus])

HSP 1 Score: 180.6 bits (457), Expect = 1.3e-42
Identity = 89/100 (89.00%), Postives = 92/100 (92.00%), Query Frame = 1


Query: 1   MGFRLPRIVTAKQSLQRSSSTGNGTSPKAVDVPKGYFTVYVGEEQKKRFVIPLSYLNQPS 60
           MGFRLPRIVTAKQSLQRSSSTGNG SPKAVDVPKGYF VY+GEEQKKRFVIPLSYLNQPS
Sbjct: 1   MGFRLPRIVTAKQSLQRSSSTGNGASPKAVDVPKGYFAVYIGEEQKKRFVIPLSYLNQPS 60

Query: 61  FQDLLSQAEEEFGYNHLMGGITIPCREDEFLNLTQSWNGS 101
           FQDLLSQAEEEFGYNH MGGITIPC E  FL+LT+S N S
Sbjct: 61  FQDLLSQAEEEFGYNHPMGGITIPCNEAYFLDLTRSLNDS 100

[Close]

BLAST of Cla015864 vs. NCBI nr
Match: gi|659094356|ref|XP_008448016.1| (PREDICTED: auxin-induced protein 15A-like [Cucumis melo])

HSP 1 Score: 179.5 bits (454), Expect = 2.9e-42
Identity = 89/100 (89.00%), Postives = 92/100 (92.00%), Query Frame = 1


Query: 1   MGFRLPRIVTAKQSLQRSSSTGNGTSPKAVDVPKGYFTVYVGEEQKKRFVIPLSYLNQPS 60
           MGFRLPRIVTAKQSLQRSSS  NGTSPK VDVPKGYF+VYVGEE KKRFVIPLSYLNQPS
Sbjct: 1   MGFRLPRIVTAKQSLQRSSSKENGTSPKIVDVPKGYFSVYVGEEHKKRFVIPLSYLNQPS 60

Query: 61  FQDLLSQAEEEFGYNHLMGGITIPCREDEFLNLTQSWNGS 101
           FQDLLSQAEEEFGYNH MGGITIPC EDEFL+LT+S N S
Sbjct: 61  FQDLLSQAEEEFGYNHPMGGITIPCHEDEFLDLTRSLNES 100

[Close]

BLAST of Cla015864 vs. NCBI nr
Match: gi|778722820|ref|XP_011658574.1| (PREDICTED: auxin-induced protein 15A-like [Cucumis sativus])

HSP 1 Score: 179.1 bits (453), Expect = 3.8e-42
Identity = 88/100 (88.00%), Postives = 93/100 (93.00%), Query Frame = 1


Query: 1   MGFRLPRIVTAKQSLQRSSSTGNGTSPKAVDVPKGYFTVYVGEEQKKRFVIPLSYLNQPS 60
           MGFRLPRIVT+KQSLQRSSSTGNG SPKAVDVPKGYFTVYVGEEQKKRFVIPLSYLNQPS
Sbjct: 1   MGFRLPRIVTSKQSLQRSSSTGNGESPKAVDVPKGYFTVYVGEEQKKRFVIPLSYLNQPS 60

Query: 61  FQDLLSQAEEEFGYNHLMGGITIPCREDEFLNLTQSWNGS 101
           FQDLLSQ+EEEFGYNH MGGITIPC ED FL++T+  N S
Sbjct: 61  FQDLLSQSEEEFGYNHPMGGITIPCSEDCFLDVTERLNES 100

The following BLAST results are available for this feature:

BLAST of Cla015864 vs. Swiss-Prot


Match Name	E-value	Identity	Description
AX10A_SOYBN	7.7e-27	61.22	Auxin-induced protein X10A OS=Glycine max PE=2 SV=1	[more]
AX6B_SOYBN	7.2e-25	61.22	Auxin-induced protein 6B OS=Glycine max PE=2 SV=1	[more]
A10A5_SOYBN	1.2e-24	59.18	Auxin-induced protein 10A5 OS=Glycine max PE=2 SV=1	[more]
ARG7_VIGRR	4.7e-24	61.70	Indole-3-acetic acid-induced protein ARG7 OS=Vigna radiata var. radiata GN=ARG7 ...	[more]
AX15A_SOYBN	2.3e-23	61.22	Auxin-induced protein 15A OS=Glycine max PE=2 SV=1	[more]

BLAST of Cla015864 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0K5T8_CUCSA	1.7e-44	92.00	Uncharacterized protein OS=Cucumis sativus GN=Csa_7G009020 PE=4 SV=1	[more]
A0A0A0K4J0_CUCSA	9.2e-43	89.00	Uncharacterized protein OS=Cucumis sativus GN=Csa_7G008980 PE=4 SV=1	[more]
A0A0A0K160_CUCSA	2.7e-42	88.00	Uncharacterized protein OS=Cucumis sativus GN=Csa_7G008990 PE=4 SV=1	[more]
A0A0A0K0H9_CUCSA	2.1e-39	84.69	Uncharacterized protein OS=Cucumis sativus GN=Csa_7G009010 PE=4 SV=1	[more]
A0A0A0K0H6_CUCSA	6.8e-38	82.35	Uncharacterized protein OS=Cucumis sativus GN=Csa_7G008960 PE=4 SV=1	[more]

BLAST of Cla015864 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|778722830\|ref\|XP_004144905.2\|	2.4e-44	92.00	PREDICTED: auxin-induced protein X10A-like [Cucumis sativus]	[more]
gi\|659094354\|ref\|XP_008448015.1\|	1.3e-42	90.00	PREDICTED: LOW QUALITY PROTEIN: auxin-induced protein X10A-like [Cucumis melo]	[more]
gi\|778722823\|ref\|XP_011658575.1\|	1.3e-42	89.00	PREDICTED: auxin-induced protein 15A-like [Cucumis sativus]	[more]
gi\|659094356\|ref\|XP_008448016.1\|	2.9e-42	89.00	PREDICTED: auxin-induced protein 15A-like [Cucumis melo]	[more]
gi\|778722820\|ref\|XP_011658574.1\|	3.8e-42	88.00	PREDICTED: auxin-induced protein 15A-like [Cucumis sativus]	[more]

Annotated Terms

The following terms have been associated with this mRNA:

Vocabulary: **INTERPRO**
Term	Definition
IPR003676	SAUR_fam

Vocabulary: **Biological Process**
Term	Definition
GO:0009733	response to auxin

GO Annotation

GO Assignments

This mRNA is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0009733	response to auxin
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
Cla015864	Cla015864	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
Cla015864	Cla015864.1-protein	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Cla015864.1.cds1	Cla015864.1.cds1	CDS

InterPro

Analysis Name: InterPro Annotations of watermelon (97103)
Date Performed: 2016-09-28


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR003676	Small auxin-up RNA	PFAM	PF02519	Auxin_inducible	coord: 17..94 score: 2.6
None	No IPR available	PANTHER	PTHR31929	FAMILY NOT NAMED	coord: 1..100 score: 1.3